Multiple sequence alignment - TraesCS2B01G199100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G199100 chr2B 100.000 3289 0 0 1 3289 177219818 177216530 0.000000e+00 6074.0
1 TraesCS2B01G199100 chr2B 94.942 514 25 1 1282 1795 177119247 177118735 0.000000e+00 804.0
2 TraesCS2B01G199100 chr2B 89.781 548 54 2 1 547 637144564 637144018 0.000000e+00 701.0
3 TraesCS2B01G199100 chr2B 89.674 552 52 3 1 549 92620738 92620189 0.000000e+00 699.0
4 TraesCS2B01G199100 chr2B 86.200 471 44 9 1327 1795 177545495 177545044 1.060000e-134 490.0
5 TraesCS2B01G199100 chr2B 79.213 534 95 11 2688 3208 90567063 90566533 1.120000e-94 357.0
6 TraesCS2B01G199100 chr2B 87.665 227 27 1 1055 1280 177119556 177119330 2.520000e-66 263.0
7 TraesCS2B01G199100 chr2B 92.727 165 12 0 1797 1961 560444438 560444274 4.240000e-59 239.0
8 TraesCS2B01G199100 chr2B 84.444 180 12 10 2095 2274 177116980 177116817 2.630000e-36 163.0
9 TraesCS2B01G199100 chr2D 88.822 1333 89 29 1936 3243 124797346 124796049 0.000000e+00 1581.0
10 TraesCS2B01G199100 chr2D 88.610 518 50 6 1282 1795 124476378 124475866 3.600000e-174 621.0
11 TraesCS2B01G199100 chr2D 84.808 520 51 14 1282 1794 124798052 124797554 6.340000e-137 497.0
12 TraesCS2B01G199100 chr2D 82.510 526 67 16 764 1280 124476970 124476461 3.900000e-119 438.0
13 TraesCS2B01G199100 chr2D 96.599 147 5 0 1959 2105 124475865 124475719 9.120000e-61 244.0
14 TraesCS2B01G199100 chr2D 92.073 164 13 0 1797 1960 628936727 628936564 7.100000e-57 231.0
15 TraesCS2B01G199100 chr2D 87.234 47 5 1 2510 2555 278357195 278357149 6.000000e-03 52.8
16 TraesCS2B01G199100 chr4A 92.168 549 39 4 1 547 656118910 656118364 0.000000e+00 773.0
17 TraesCS2B01G199100 chr4A 90.876 548 48 2 1 547 656339220 656338674 0.000000e+00 734.0
18 TraesCS2B01G199100 chr7B 90.893 549 48 2 1 548 188221717 188222264 0.000000e+00 736.0
19 TraesCS2B01G199100 chr7B 91.329 173 15 0 1788 1960 595441886 595442058 1.530000e-58 237.0
20 TraesCS2B01G199100 chr7B 84.064 251 33 7 2094 2344 385026980 385027223 5.490000e-58 235.0
21 TraesCS2B01G199100 chr7B 93.617 47 2 1 2598 2643 159509370 159509416 5.890000e-08 69.4
22 TraesCS2B01G199100 chr7B 87.500 48 5 1 2509 2555 741333282 741333329 2.000000e-03 54.7
23 TraesCS2B01G199100 chr3B 90.293 546 51 2 1 545 102457308 102457852 0.000000e+00 713.0
24 TraesCS2B01G199100 chr3B 78.731 583 105 14 2688 3255 4473500 4472922 4.010000e-99 372.0
25 TraesCS2B01G199100 chr3B 77.593 241 38 12 2444 2675 158699126 158699359 7.410000e-27 132.0
26 TraesCS2B01G199100 chr3B 94.231 52 3 0 2 53 284633502 284633553 2.720000e-11 80.5
27 TraesCS2B01G199100 chr1B 90.146 548 49 4 1 545 679026340 679026885 0.000000e+00 708.0
28 TraesCS2B01G199100 chr1B 89.744 546 52 4 1 545 678425530 678426072 0.000000e+00 695.0
29 TraesCS2B01G199100 chr1B 84.244 476 54 9 1325 1799 15375821 15375366 8.370000e-121 444.0
30 TraesCS2B01G199100 chr1B 79.383 616 109 14 2688 3289 660771809 660771198 5.080000e-113 418.0
31 TraesCS2B01G199100 chr1B 82.548 361 44 13 1325 1685 15370002 15369661 1.920000e-77 300.0
32 TraesCS2B01G199100 chr1B 92.857 42 2 1 2515 2555 461310876 461310917 3.540000e-05 60.2
33 TraesCS2B01G199100 chr4B 91.373 510 43 1 36 544 560052598 560052089 0.000000e+00 697.0
34 TraesCS2B01G199100 chr4B 77.241 580 111 16 2690 3255 227169650 227170222 1.470000e-83 320.0
35 TraesCS2B01G199100 chr4B 76.509 613 122 16 2688 3286 227125066 227125670 6.850000e-82 315.0
36 TraesCS2B01G199100 chr2A 86.583 477 41 11 1327 1799 130714586 130714129 3.790000e-139 505.0
37 TraesCS2B01G199100 chr2A 93.496 246 11 4 1962 2207 130714129 130713889 8.680000e-96 361.0
38 TraesCS2B01G199100 chr2A 87.234 47 5 1 2510 2555 320199437 320199483 6.000000e-03 52.8
39 TraesCS2B01G199100 chr3A 78.100 621 114 17 2682 3286 607455427 607456041 1.110000e-99 374.0
40 TraesCS2B01G199100 chr3A 92.073 164 13 0 1797 1960 594011140 594011303 7.100000e-57 231.0
41 TraesCS2B01G199100 chr5A 77.778 621 112 23 2682 3286 622064035 622064645 3.120000e-95 359.0
42 TraesCS2B01G199100 chr7A 77.257 576 112 17 2682 3243 230372057 230372627 1.470000e-83 320.0
43 TraesCS2B01G199100 chr6D 92.216 167 13 0 1797 1963 293177403 293177237 1.530000e-58 237.0
44 TraesCS2B01G199100 chr6D 91.667 168 14 0 1797 1964 243032891 243033058 1.970000e-57 233.0
45 TraesCS2B01G199100 chr5B 91.667 168 13 1 1797 1964 13424115 13424281 7.100000e-57 231.0
46 TraesCS2B01G199100 chr1D 91.228 171 14 1 1790 1960 180851743 180851574 7.100000e-57 231.0
47 TraesCS2B01G199100 chr5D 91.176 170 14 1 1794 1962 241019681 241019850 2.550000e-56 230.0
48 TraesCS2B01G199100 chr5D 80.172 116 13 8 2518 2627 374400399 374400288 9.780000e-11 78.7
49 TraesCS2B01G199100 chr3D 76.682 223 37 11 2462 2675 107662491 107662707 3.470000e-20 110.0
50 TraesCS2B01G199100 chr7D 97.143 35 0 1 2522 2555 232460906 232460940 1.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G199100 chr2B 177216530 177219818 3288 True 6074.000000 6074 100.000000 1 3289 1 chr2B.!!$R3 3288
1 TraesCS2B01G199100 chr2B 637144018 637144564 546 True 701.000000 701 89.781000 1 547 1 chr2B.!!$R6 546
2 TraesCS2B01G199100 chr2B 92620189 92620738 549 True 699.000000 699 89.674000 1 549 1 chr2B.!!$R2 548
3 TraesCS2B01G199100 chr2B 177116817 177119556 2739 True 410.000000 804 89.017000 1055 2274 3 chr2B.!!$R7 1219
4 TraesCS2B01G199100 chr2B 90566533 90567063 530 True 357.000000 357 79.213000 2688 3208 1 chr2B.!!$R1 520
5 TraesCS2B01G199100 chr2D 124796049 124798052 2003 True 1039.000000 1581 86.815000 1282 3243 2 chr2D.!!$R4 1961
6 TraesCS2B01G199100 chr2D 124475719 124476970 1251 True 434.333333 621 89.239667 764 2105 3 chr2D.!!$R3 1341
7 TraesCS2B01G199100 chr4A 656118364 656118910 546 True 773.000000 773 92.168000 1 547 1 chr4A.!!$R1 546
8 TraesCS2B01G199100 chr4A 656338674 656339220 546 True 734.000000 734 90.876000 1 547 1 chr4A.!!$R2 546
9 TraesCS2B01G199100 chr7B 188221717 188222264 547 False 736.000000 736 90.893000 1 548 1 chr7B.!!$F2 547
10 TraesCS2B01G199100 chr3B 102457308 102457852 544 False 713.000000 713 90.293000 1 545 1 chr3B.!!$F1 544
11 TraesCS2B01G199100 chr3B 4472922 4473500 578 True 372.000000 372 78.731000 2688 3255 1 chr3B.!!$R1 567
12 TraesCS2B01G199100 chr1B 679026340 679026885 545 False 708.000000 708 90.146000 1 545 1 chr1B.!!$F3 544
13 TraesCS2B01G199100 chr1B 678425530 678426072 542 False 695.000000 695 89.744000 1 545 1 chr1B.!!$F2 544
14 TraesCS2B01G199100 chr1B 660771198 660771809 611 True 418.000000 418 79.383000 2688 3289 1 chr1B.!!$R3 601
15 TraesCS2B01G199100 chr4B 560052089 560052598 509 True 697.000000 697 91.373000 36 544 1 chr4B.!!$R1 508
16 TraesCS2B01G199100 chr4B 227169650 227170222 572 False 320.000000 320 77.241000 2690 3255 1 chr4B.!!$F2 565
17 TraesCS2B01G199100 chr4B 227125066 227125670 604 False 315.000000 315 76.509000 2688 3286 1 chr4B.!!$F1 598
18 TraesCS2B01G199100 chr2A 130713889 130714586 697 True 433.000000 505 90.039500 1327 2207 2 chr2A.!!$R1 880
19 TraesCS2B01G199100 chr3A 607455427 607456041 614 False 374.000000 374 78.100000 2682 3286 1 chr3A.!!$F2 604
20 TraesCS2B01G199100 chr5A 622064035 622064645 610 False 359.000000 359 77.778000 2682 3286 1 chr5A.!!$F1 604
21 TraesCS2B01G199100 chr7A 230372057 230372627 570 False 320.000000 320 77.257000 2682 3243 1 chr7A.!!$F1 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 690 0.029567 GGATCCGAGTCAGCACGTAG 59.970 60.0 0.00 0.0 0.00 3.51 F
841 858 0.404040 TTTCCTTCCACTTGGCCGAT 59.596 50.0 0.00 0.0 34.44 4.18 F
880 897 0.534203 TTGTTGTCTGGCCTTCCGTC 60.534 55.0 3.32 0.0 34.14 4.79 F
999 1017 0.623194 CACATCCACACCCATACCCA 59.377 55.0 0.00 0.0 0.00 4.51 F
1001 1019 0.623194 CATCCACACCCATACCCACA 59.377 55.0 0.00 0.0 0.00 4.17 F
1002 1020 0.623723 ATCCACACCCATACCCACAC 59.376 55.0 0.00 0.0 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 1692 0.548031 CCTTGATCTTGGCCAGCCTA 59.452 55.000 5.11 0.8 36.94 3.93 R
2685 4592 0.776810 TGCCATGAAAAGGGGTGAGA 59.223 50.000 0.00 0.0 0.00 3.27 R
2754 4661 5.941948 AGACAATTTTAACTCTTCACCCG 57.058 39.130 0.00 0.0 0.00 5.28 R
2945 4857 1.087501 GTCCGATGCTCAAAAGGACC 58.912 55.000 1.76 0.0 43.99 4.46 R
2961 4873 4.280677 TCCATGTGACAAAATTGAAGGTCC 59.719 41.667 0.00 0.0 0.00 4.46 R
3012 4925 7.149569 TGTCAAAATAGCATTTTCAGAGAGG 57.850 36.000 4.52 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 5.232414 GTGCCTATAAAGAAGTCACACGATC 59.768 44.000 0.00 0.00 0.00 3.69
248 251 8.319146 CGTAACTACCCCATAAATCTCCATTAT 58.681 37.037 0.00 0.00 0.00 1.28
279 282 8.547481 AATATAATGGGAACGAAAAGGGAAAT 57.453 30.769 0.00 0.00 0.00 2.17
344 349 2.280254 TGTTTCGCGCGGAAAGGA 60.280 55.556 27.64 9.89 44.95 3.36
353 358 0.110373 CGCGGAAAGGAAAAACGGAG 60.110 55.000 0.00 0.00 0.00 4.63
410 415 3.556775 CACGAAACTACAAACCGGAAAGA 59.443 43.478 9.46 0.00 0.00 2.52
449 454 1.152830 GCCACCTGGTTTTCCCTGA 59.847 57.895 0.00 0.00 39.73 3.86
549 556 1.203052 CGTTAACTAGTTGCTCCCGGA 59.797 52.381 18.56 0.00 0.00 5.14
550 557 2.734492 CGTTAACTAGTTGCTCCCGGAG 60.734 54.545 18.56 10.41 0.00 4.63
551 558 2.494870 GTTAACTAGTTGCTCCCGGAGA 59.505 50.000 19.33 0.00 0.00 3.71
552 559 1.640917 AACTAGTTGCTCCCGGAGAA 58.359 50.000 19.33 4.41 0.00 2.87
553 560 1.187087 ACTAGTTGCTCCCGGAGAAG 58.813 55.000 19.33 8.73 0.00 2.85
554 561 1.272536 ACTAGTTGCTCCCGGAGAAGA 60.273 52.381 19.33 0.00 0.00 2.87
555 562 1.135333 CTAGTTGCTCCCGGAGAAGAC 59.865 57.143 19.33 12.03 0.00 3.01
556 563 1.079057 GTTGCTCCCGGAGAAGACC 60.079 63.158 19.33 0.18 0.00 3.85
563 570 2.962569 CGGAGAAGACCGCACTGA 59.037 61.111 0.00 0.00 46.20 3.41
564 571 1.289066 CGGAGAAGACCGCACTGAA 59.711 57.895 0.00 0.00 46.20 3.02
565 572 0.319555 CGGAGAAGACCGCACTGAAA 60.320 55.000 0.00 0.00 46.20 2.69
566 573 1.433534 GGAGAAGACCGCACTGAAAG 58.566 55.000 0.00 0.00 42.29 2.62
567 574 1.000955 GGAGAAGACCGCACTGAAAGA 59.999 52.381 0.00 0.00 37.43 2.52
568 575 2.548067 GGAGAAGACCGCACTGAAAGAA 60.548 50.000 0.00 0.00 37.43 2.52
569 576 2.734079 GAGAAGACCGCACTGAAAGAAG 59.266 50.000 0.00 0.00 37.43 2.85
570 577 1.195674 GAAGACCGCACTGAAAGAAGC 59.804 52.381 0.00 0.00 37.43 3.86
571 578 0.603975 AGACCGCACTGAAAGAAGCC 60.604 55.000 0.00 0.00 37.43 4.35
572 579 0.884704 GACCGCACTGAAAGAAGCCA 60.885 55.000 0.00 0.00 37.43 4.75
573 580 1.166531 ACCGCACTGAAAGAAGCCAC 61.167 55.000 0.00 0.00 37.43 5.01
574 581 1.205064 CGCACTGAAAGAAGCCACG 59.795 57.895 0.00 0.00 37.43 4.94
575 582 1.576421 GCACTGAAAGAAGCCACGG 59.424 57.895 0.00 0.00 37.43 4.94
576 583 1.856265 GCACTGAAAGAAGCCACGGG 61.856 60.000 0.00 0.00 37.43 5.28
577 584 1.600916 ACTGAAAGAAGCCACGGGC 60.601 57.895 6.80 6.80 43.96 6.13
578 585 1.600636 CTGAAAGAAGCCACGGGCA 60.601 57.895 15.92 0.00 45.51 5.36
579 586 1.172180 CTGAAAGAAGCCACGGGCAA 61.172 55.000 15.92 0.00 45.51 4.52
580 587 3.074673 CTGAAAGAAGCCACGGGCAAG 62.075 57.143 15.92 0.61 45.51 4.01
587 594 2.750350 CCACGGGCAAGTCTCCTT 59.250 61.111 0.00 0.00 0.00 3.36
588 595 1.376037 CCACGGGCAAGTCTCCTTC 60.376 63.158 0.00 0.00 0.00 3.46
589 596 1.674057 CACGGGCAAGTCTCCTTCT 59.326 57.895 0.00 0.00 0.00 2.85
590 597 0.390472 CACGGGCAAGTCTCCTTCTC 60.390 60.000 0.00 0.00 0.00 2.87
591 598 1.219393 CGGGCAAGTCTCCTTCTCC 59.781 63.158 0.00 0.00 0.00 3.71
592 599 1.261238 CGGGCAAGTCTCCTTCTCCT 61.261 60.000 0.00 0.00 0.00 3.69
593 600 0.539518 GGGCAAGTCTCCTTCTCCTC 59.460 60.000 0.00 0.00 0.00 3.71
594 601 0.174617 GGCAAGTCTCCTTCTCCTCG 59.825 60.000 0.00 0.00 0.00 4.63
595 602 0.892063 GCAAGTCTCCTTCTCCTCGT 59.108 55.000 0.00 0.00 0.00 4.18
596 603 1.135228 GCAAGTCTCCTTCTCCTCGTC 60.135 57.143 0.00 0.00 0.00 4.20
597 604 2.163509 CAAGTCTCCTTCTCCTCGTCA 58.836 52.381 0.00 0.00 0.00 4.35
598 605 2.122783 AGTCTCCTTCTCCTCGTCAG 57.877 55.000 0.00 0.00 0.00 3.51
599 606 0.454196 GTCTCCTTCTCCTCGTCAGC 59.546 60.000 0.00 0.00 0.00 4.26
600 607 0.038310 TCTCCTTCTCCTCGTCAGCA 59.962 55.000 0.00 0.00 0.00 4.41
601 608 0.891373 CTCCTTCTCCTCGTCAGCAA 59.109 55.000 0.00 0.00 0.00 3.91
602 609 0.603569 TCCTTCTCCTCGTCAGCAAC 59.396 55.000 0.00 0.00 0.00 4.17
603 610 0.390472 CCTTCTCCTCGTCAGCAACC 60.390 60.000 0.00 0.00 0.00 3.77
604 611 0.390472 CTTCTCCTCGTCAGCAACCC 60.390 60.000 0.00 0.00 0.00 4.11
605 612 1.118965 TTCTCCTCGTCAGCAACCCA 61.119 55.000 0.00 0.00 0.00 4.51
606 613 0.904865 TCTCCTCGTCAGCAACCCAT 60.905 55.000 0.00 0.00 0.00 4.00
607 614 0.742281 CTCCTCGTCAGCAACCCATG 60.742 60.000 0.00 0.00 0.00 3.66
608 615 1.003355 CCTCGTCAGCAACCCATGT 60.003 57.895 0.00 0.00 0.00 3.21
609 616 0.606401 CCTCGTCAGCAACCCATGTT 60.606 55.000 0.00 0.00 34.14 2.71
610 617 0.798776 CTCGTCAGCAACCCATGTTC 59.201 55.000 0.00 0.00 30.42 3.18
611 618 0.605319 TCGTCAGCAACCCATGTTCC 60.605 55.000 0.00 0.00 30.42 3.62
612 619 1.875963 GTCAGCAACCCATGTTCCG 59.124 57.895 0.00 0.00 30.42 4.30
613 620 1.303236 TCAGCAACCCATGTTCCGG 60.303 57.895 0.00 0.00 30.42 5.14
620 627 2.677228 CCATGTTCCGGGGAAGCT 59.323 61.111 0.00 0.00 34.49 3.74
621 628 1.000896 CCATGTTCCGGGGAAGCTT 60.001 57.895 0.00 0.00 34.49 3.74
622 629 1.032114 CCATGTTCCGGGGAAGCTTC 61.032 60.000 18.54 18.54 34.49 3.86
623 630 1.032114 CATGTTCCGGGGAAGCTTCC 61.032 60.000 33.67 33.67 46.82 3.46
624 631 1.208165 ATGTTCCGGGGAAGCTTCCT 61.208 55.000 37.72 18.06 46.72 3.36
625 632 1.078356 GTTCCGGGGAAGCTTCCTC 60.078 63.158 37.72 35.18 46.72 3.71
629 636 3.388841 GGGGAAGCTTCCTCGTCA 58.611 61.111 37.72 0.00 46.72 4.35
630 637 1.219393 GGGGAAGCTTCCTCGTCAG 59.781 63.158 37.72 0.00 46.72 3.51
631 638 1.448717 GGGAAGCTTCCTCGTCAGC 60.449 63.158 37.72 20.09 46.72 4.26
632 639 1.293498 GGAAGCTTCCTCGTCAGCA 59.707 57.895 33.98 0.00 44.11 4.41
633 640 0.739112 GGAAGCTTCCTCGTCAGCAG 60.739 60.000 33.98 0.00 44.11 4.24
634 641 1.357991 GAAGCTTCCTCGTCAGCAGC 61.358 60.000 15.97 0.00 38.61 5.25
635 642 2.794820 AAGCTTCCTCGTCAGCAGCC 62.795 60.000 0.00 0.00 38.61 4.85
636 643 2.125350 CTTCCTCGTCAGCAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
637 644 2.922503 TTCCTCGTCAGCAGCCCA 60.923 61.111 0.00 0.00 0.00 5.36
638 645 2.249413 CTTCCTCGTCAGCAGCCCAT 62.249 60.000 0.00 0.00 0.00 4.00
639 646 2.513204 CCTCGTCAGCAGCCCATG 60.513 66.667 0.00 0.00 0.00 3.66
640 647 2.267006 CTCGTCAGCAGCCCATGT 59.733 61.111 0.00 0.00 0.00 3.21
641 648 1.812922 CTCGTCAGCAGCCCATGTC 60.813 63.158 0.00 0.00 0.00 3.06
642 649 2.821366 CGTCAGCAGCCCATGTCC 60.821 66.667 0.00 0.00 0.00 4.02
643 650 2.821366 GTCAGCAGCCCATGTCCG 60.821 66.667 0.00 0.00 0.00 4.79
644 651 3.002583 TCAGCAGCCCATGTCCGA 61.003 61.111 0.00 0.00 0.00 4.55
645 652 2.821366 CAGCAGCCCATGTCCGAC 60.821 66.667 0.00 0.00 0.00 4.79
646 653 3.005539 AGCAGCCCATGTCCGACT 61.006 61.111 0.00 0.00 0.00 4.18
647 654 2.512515 GCAGCCCATGTCCGACTC 60.513 66.667 0.00 0.00 0.00 3.36
648 655 2.202797 CAGCCCATGTCCGACTCG 60.203 66.667 0.00 0.00 0.00 4.18
649 656 4.148825 AGCCCATGTCCGACTCGC 62.149 66.667 0.00 0.00 0.00 5.03
651 658 4.129737 CCCATGTCCGACTCGCGT 62.130 66.667 5.77 0.00 38.67 6.01
652 659 2.126071 CCATGTCCGACTCGCGTT 60.126 61.111 5.77 0.00 38.67 4.84
653 660 2.444624 CCATGTCCGACTCGCGTTG 61.445 63.158 5.77 2.81 38.67 4.10
654 661 2.809601 ATGTCCGACTCGCGTTGC 60.810 61.111 5.77 0.00 38.67 4.17
667 674 3.064324 GTTGCCGCCTTGCTGGAT 61.064 61.111 0.49 0.00 38.35 3.41
668 675 2.751436 TTGCCGCCTTGCTGGATC 60.751 61.111 0.49 0.00 38.35 3.36
669 676 4.802051 TGCCGCCTTGCTGGATCC 62.802 66.667 4.20 4.20 38.35 3.36
671 678 4.161295 CCGCCTTGCTGGATCCGA 62.161 66.667 7.39 0.00 38.35 4.55
672 679 2.587194 CGCCTTGCTGGATCCGAG 60.587 66.667 7.39 7.03 38.35 4.63
673 680 2.586792 GCCTTGCTGGATCCGAGT 59.413 61.111 7.39 0.00 38.35 4.18
674 681 1.522580 GCCTTGCTGGATCCGAGTC 60.523 63.158 7.39 3.58 38.35 3.36
675 682 1.900351 CCTTGCTGGATCCGAGTCA 59.100 57.895 7.39 5.90 38.35 3.41
676 683 0.179089 CCTTGCTGGATCCGAGTCAG 60.179 60.000 7.39 0.00 38.35 3.51
679 686 4.823276 CTGGATCCGAGTCAGCAC 57.177 61.111 7.39 0.00 0.00 4.40
680 687 1.226802 CTGGATCCGAGTCAGCACG 60.227 63.158 7.39 0.00 0.00 5.34
681 688 1.938657 CTGGATCCGAGTCAGCACGT 61.939 60.000 7.39 0.00 0.00 4.49
682 689 0.678684 TGGATCCGAGTCAGCACGTA 60.679 55.000 7.39 0.00 0.00 3.57
683 690 0.029567 GGATCCGAGTCAGCACGTAG 59.970 60.000 0.00 0.00 0.00 3.51
685 692 1.938577 GATCCGAGTCAGCACGTAGTA 59.061 52.381 0.00 0.00 41.61 1.82
686 693 1.366679 TCCGAGTCAGCACGTAGTAG 58.633 55.000 0.00 0.00 41.61 2.57
687 694 1.085091 CCGAGTCAGCACGTAGTAGT 58.915 55.000 0.00 0.00 41.61 2.73
688 695 1.202043 CCGAGTCAGCACGTAGTAGTG 60.202 57.143 0.00 0.00 41.61 2.74
689 696 1.463831 CGAGTCAGCACGTAGTAGTGT 59.536 52.381 0.00 0.00 41.61 3.55
690 697 2.095869 CGAGTCAGCACGTAGTAGTGTT 60.096 50.000 0.00 0.00 41.61 3.32
691 698 3.608707 CGAGTCAGCACGTAGTAGTGTTT 60.609 47.826 0.00 0.00 41.61 2.83
692 699 4.296690 GAGTCAGCACGTAGTAGTGTTTT 58.703 43.478 0.00 0.00 41.61 2.43
693 700 4.296690 AGTCAGCACGTAGTAGTGTTTTC 58.703 43.478 0.00 0.00 41.61 2.29
694 701 3.119136 GTCAGCACGTAGTAGTGTTTTCG 59.881 47.826 0.00 0.00 41.61 3.46
695 702 3.047796 CAGCACGTAGTAGTGTTTTCGT 58.952 45.455 0.00 0.00 41.61 3.85
696 703 4.024133 TCAGCACGTAGTAGTGTTTTCGTA 60.024 41.667 0.00 0.00 41.61 3.43
697 704 4.676471 CAGCACGTAGTAGTGTTTTCGTAA 59.324 41.667 0.00 0.00 41.61 3.18
698 705 5.173673 CAGCACGTAGTAGTGTTTTCGTAAA 59.826 40.000 0.00 0.00 41.61 2.01
699 706 5.173854 AGCACGTAGTAGTGTTTTCGTAAAC 59.826 40.000 10.38 10.38 41.61 2.01
700 707 5.051774 GCACGTAGTAGTGTTTTCGTAAACA 60.052 40.000 15.31 15.31 45.55 2.83
716 723 9.546909 TTTCGTAAACATTACTAGAGTACTTCG 57.453 33.333 0.00 0.00 0.00 3.79
717 724 8.479313 TCGTAAACATTACTAGAGTACTTCGA 57.521 34.615 0.00 0.00 0.00 3.71
718 725 8.935844 TCGTAAACATTACTAGAGTACTTCGAA 58.064 33.333 0.00 0.00 0.00 3.71
719 726 9.713740 CGTAAACATTACTAGAGTACTTCGAAT 57.286 33.333 0.00 0.00 0.00 3.34
722 729 9.733219 AAACATTACTAGAGTACTTCGAATAGC 57.267 33.333 0.00 0.00 0.00 2.97
723 730 8.447924 ACATTACTAGAGTACTTCGAATAGCA 57.552 34.615 0.00 0.00 0.00 3.49
724 731 9.069082 ACATTACTAGAGTACTTCGAATAGCAT 57.931 33.333 0.00 0.00 0.00 3.79
725 732 9.900710 CATTACTAGAGTACTTCGAATAGCATT 57.099 33.333 0.00 0.00 0.00 3.56
727 734 9.947669 TTACTAGAGTACTTCGAATAGCATTTC 57.052 33.333 0.00 0.00 0.00 2.17
728 735 8.228035 ACTAGAGTACTTCGAATAGCATTTCT 57.772 34.615 0.00 0.00 0.00 2.52
729 736 8.347035 ACTAGAGTACTTCGAATAGCATTTCTC 58.653 37.037 0.00 0.00 0.00 2.87
730 737 6.202937 AGAGTACTTCGAATAGCATTTCTCG 58.797 40.000 0.00 0.00 0.00 4.04
731 738 5.892568 AGTACTTCGAATAGCATTTCTCGT 58.107 37.500 0.00 0.00 33.15 4.18
732 739 5.972382 AGTACTTCGAATAGCATTTCTCGTC 59.028 40.000 0.00 0.00 33.15 4.20
733 740 4.744570 ACTTCGAATAGCATTTCTCGTCA 58.255 39.130 0.00 0.00 33.15 4.35
734 741 5.168569 ACTTCGAATAGCATTTCTCGTCAA 58.831 37.500 0.00 0.00 33.15 3.18
735 742 5.289675 ACTTCGAATAGCATTTCTCGTCAAG 59.710 40.000 0.00 0.00 33.15 3.02
736 743 4.993905 TCGAATAGCATTTCTCGTCAAGA 58.006 39.130 0.00 0.00 33.15 3.02
747 754 1.865865 TCGTCAAGAGAAAGGTGCAC 58.134 50.000 8.80 8.80 0.00 4.57
748 755 0.868406 CGTCAAGAGAAAGGTGCACC 59.132 55.000 29.22 29.22 0.00 5.01
749 756 0.868406 GTCAAGAGAAAGGTGCACCG 59.132 55.000 29.68 13.25 42.08 4.94
750 757 0.884704 TCAAGAGAAAGGTGCACCGC 60.885 55.000 29.68 21.94 42.08 5.68
751 758 1.961277 AAGAGAAAGGTGCACCGCG 60.961 57.895 29.68 0.00 42.08 6.46
752 759 4.090057 GAGAAAGGTGCACCGCGC 62.090 66.667 29.68 21.24 42.08 6.86
761 768 4.776647 GCACCGCGCATTGGTTCC 62.777 66.667 8.75 0.00 41.79 3.62
762 769 3.055719 CACCGCGCATTGGTTCCT 61.056 61.111 8.75 0.00 37.72 3.36
775 782 1.455383 GGTTCCTGTTGCAGTGGGTG 61.455 60.000 0.00 0.00 0.00 4.61
829 846 2.556287 CGCACACCGCTTTCCTTC 59.444 61.111 0.00 0.00 39.08 3.46
835 852 0.593128 CACCGCTTTCCTTCCACTTG 59.407 55.000 0.00 0.00 0.00 3.16
841 858 0.404040 TTTCCTTCCACTTGGCCGAT 59.596 50.000 0.00 0.00 34.44 4.18
848 865 1.815421 CACTTGGCCGATTCTCCCG 60.815 63.158 0.00 0.00 0.00 5.14
850 867 1.521681 CTTGGCCGATTCTCCCGTC 60.522 63.158 0.00 0.00 0.00 4.79
852 869 1.956629 TTGGCCGATTCTCCCGTCTC 61.957 60.000 0.00 0.00 0.00 3.36
853 870 2.417936 GCCGATTCTCCCGTCTCC 59.582 66.667 0.00 0.00 0.00 3.71
864 881 3.036084 CGTCTCCGCGTGCTTTGT 61.036 61.111 4.92 0.00 0.00 2.83
880 897 0.534203 TTGTTGTCTGGCCTTCCGTC 60.534 55.000 3.32 0.00 34.14 4.79
883 900 1.415672 TTGTCTGGCCTTCCGTCCTT 61.416 55.000 3.32 0.00 34.14 3.36
884 901 1.375326 GTCTGGCCTTCCGTCCTTT 59.625 57.895 3.32 0.00 34.14 3.11
887 904 1.842381 CTGGCCTTCCGTCCTTTCCT 61.842 60.000 3.32 0.00 34.14 3.36
889 906 1.377333 GCCTTCCGTCCTTTCCTGG 60.377 63.158 0.00 0.00 0.00 4.45
920 937 0.658897 GTTTGAAAGGACGTTGCCGA 59.341 50.000 0.00 0.00 37.88 5.54
921 938 0.941542 TTTGAAAGGACGTTGCCGAG 59.058 50.000 0.00 0.00 37.88 4.63
926 943 2.357034 GGACGTTGCCGAGCTCAA 60.357 61.111 15.40 0.00 37.88 3.02
932 949 1.201965 CGTTGCCGAGCTCAATTTCTC 60.202 52.381 15.40 0.00 35.63 2.87
933 950 1.131315 GTTGCCGAGCTCAATTTCTCC 59.869 52.381 15.40 0.00 0.00 3.71
937 954 2.275318 CCGAGCTCAATTTCTCCTCAC 58.725 52.381 15.40 0.00 0.00 3.51
953 971 5.072329 TCTCCTCACTTCATCAAAAAGGTCT 59.928 40.000 0.00 0.00 0.00 3.85
960 978 6.694411 CACTTCATCAAAAAGGTCTGAACTTG 59.306 38.462 9.03 0.00 0.00 3.16
961 979 6.378280 ACTTCATCAAAAAGGTCTGAACTTGT 59.622 34.615 9.03 0.00 0.00 3.16
962 980 6.135290 TCATCAAAAAGGTCTGAACTTGTG 57.865 37.500 9.03 10.44 0.00 3.33
977 995 9.990360 TCTGAACTTGTGTGAACTATAAATACA 57.010 29.630 0.00 0.00 0.00 2.29
994 1012 5.387113 AATACATACACATCCACACCCAT 57.613 39.130 0.00 0.00 0.00 4.00
996 1014 4.150897 ACATACACATCCACACCCATAC 57.849 45.455 0.00 0.00 0.00 2.39
997 1015 3.118038 ACATACACATCCACACCCATACC 60.118 47.826 0.00 0.00 0.00 2.73
998 1016 0.623723 ACACATCCACACCCATACCC 59.376 55.000 0.00 0.00 0.00 3.69
999 1017 0.623194 CACATCCACACCCATACCCA 59.377 55.000 0.00 0.00 0.00 4.51
1000 1018 0.623723 ACATCCACACCCATACCCAC 59.376 55.000 0.00 0.00 0.00 4.61
1001 1019 0.623194 CATCCACACCCATACCCACA 59.377 55.000 0.00 0.00 0.00 4.17
1002 1020 0.623723 ATCCACACCCATACCCACAC 59.376 55.000 0.00 0.00 0.00 3.82
1006 1024 3.012722 ACCCATACCCACACCCCG 61.013 66.667 0.00 0.00 0.00 5.73
1023 1041 2.534019 CGCACTCCGCACTTTGTGT 61.534 57.895 0.00 0.00 42.60 3.72
1033 1051 2.405892 CACTTTGTGTGCAAGTAGCC 57.594 50.000 0.00 0.00 44.83 3.93
1040 1058 3.270027 TGTGTGCAAGTAGCCATACATC 58.730 45.455 0.00 0.00 44.83 3.06
1043 1061 3.197549 TGTGCAAGTAGCCATACATCAGA 59.802 43.478 0.00 0.00 44.83 3.27
1044 1062 3.806521 GTGCAAGTAGCCATACATCAGAG 59.193 47.826 0.00 0.00 44.83 3.35
1045 1063 2.805099 GCAAGTAGCCATACATCAGAGC 59.195 50.000 0.00 0.00 37.23 4.09
1046 1064 3.494048 GCAAGTAGCCATACATCAGAGCT 60.494 47.826 0.00 0.00 37.23 4.09
1047 1065 4.262207 GCAAGTAGCCATACATCAGAGCTA 60.262 45.833 0.00 0.00 37.23 3.32
1048 1066 5.468592 CAAGTAGCCATACATCAGAGCTAG 58.531 45.833 0.00 0.00 36.76 3.42
1051 1069 3.570540 AGCCATACATCAGAGCTAGTGA 58.429 45.455 0.85 0.85 30.46 3.41
1053 1071 3.320541 GCCATACATCAGAGCTAGTGACT 59.679 47.826 0.35 0.00 0.00 3.41
1104 1123 1.072116 GTACGTACGCCAATGTCGCA 61.072 55.000 16.72 0.00 0.00 5.10
1150 1169 4.635769 GGACATGATCCGCCAACA 57.364 55.556 0.00 0.00 37.88 3.33
1180 1199 2.655685 GAAGAGATCGCCGTCCGC 60.656 66.667 0.00 0.00 36.73 5.54
1199 1218 3.998672 TGGTCCCGGCGTCAGAAC 61.999 66.667 6.01 2.77 0.00 3.01
1201 1220 2.737376 GTCCCGGCGTCAGAACAC 60.737 66.667 6.01 0.00 0.00 3.32
1228 1247 4.457496 CCGGCGGCAGACATCACT 62.457 66.667 15.42 0.00 0.00 3.41
1230 1249 1.153647 CGGCGGCAGACATCACTAA 60.154 57.895 10.53 0.00 0.00 2.24
1261 1280 1.977544 ACGTCTGCCGCTTCCTACT 60.978 57.895 0.00 0.00 41.42 2.57
1267 1286 1.144936 GCCGCTTCCTACTGCATCT 59.855 57.895 0.00 0.00 0.00 2.90
1269 1288 1.576356 CCGCTTCCTACTGCATCTTC 58.424 55.000 0.00 0.00 0.00 2.87
1553 1662 1.140589 CGCGCTGTCTCTCTCCATT 59.859 57.895 5.56 0.00 0.00 3.16
1748 1857 1.796355 CGTCATGTCGTCTCGCGTT 60.796 57.895 5.77 0.00 42.13 4.84
1774 1883 3.268330 GGAAATACTTCTGGGACGAACC 58.732 50.000 0.00 0.00 38.08 3.62
1790 1903 5.080969 ACGAACCCTGAATCTTCGATAAA 57.919 39.130 8.92 0.00 39.29 1.40
1810 2069 1.657804 AAATCACTCCCTCCGTTCCT 58.342 50.000 0.00 0.00 0.00 3.36
1811 2070 2.544844 AATCACTCCCTCCGTTCCTA 57.455 50.000 0.00 0.00 0.00 2.94
1818 2077 5.773680 TCACTCCCTCCGTTCCTAAATATAG 59.226 44.000 0.00 0.00 0.00 1.31
1838 2097 9.968870 AATATAGGTCTTCGTAGAGATTTCAAC 57.031 33.333 0.00 0.00 38.43 3.18
1839 2098 5.723672 AGGTCTTCGTAGAGATTTCAACA 57.276 39.130 0.00 0.00 38.43 3.33
1841 2100 6.159988 AGGTCTTCGTAGAGATTTCAACAAG 58.840 40.000 0.00 0.00 38.43 3.16
1843 2102 7.039923 AGGTCTTCGTAGAGATTTCAACAAGTA 60.040 37.037 0.00 0.00 38.43 2.24
1844 2103 7.597743 GGTCTTCGTAGAGATTTCAACAAGTAA 59.402 37.037 0.00 0.00 38.43 2.24
1846 2105 8.358148 TCTTCGTAGAGATTTCAACAAGTAACT 58.642 33.333 0.00 0.00 38.43 2.24
1848 2107 8.961294 TCGTAGAGATTTCAACAAGTAACTAC 57.039 34.615 0.00 0.00 0.00 2.73
1850 2109 9.355215 CGTAGAGATTTCAACAAGTAACTACAT 57.645 33.333 0.00 0.00 0.00 2.29
1857 2116 7.843490 TTCAACAAGTAACTACATATGGAGC 57.157 36.000 15.30 0.00 0.00 4.70
1858 2117 6.941857 TCAACAAGTAACTACATATGGAGCA 58.058 36.000 15.30 0.00 0.00 4.26
1859 2118 7.390823 TCAACAAGTAACTACATATGGAGCAA 58.609 34.615 15.30 0.00 0.00 3.91
1860 2119 7.880713 TCAACAAGTAACTACATATGGAGCAAA 59.119 33.333 15.30 0.00 0.00 3.68
1861 2120 8.511321 CAACAAGTAACTACATATGGAGCAAAA 58.489 33.333 15.30 0.00 0.00 2.44
1862 2121 8.807948 ACAAGTAACTACATATGGAGCAAAAT 57.192 30.769 15.30 0.00 0.00 1.82
1863 2122 8.677300 ACAAGTAACTACATATGGAGCAAAATG 58.323 33.333 15.30 11.15 0.00 2.32
1864 2123 8.892723 CAAGTAACTACATATGGAGCAAAATGA 58.107 33.333 15.30 0.00 0.00 2.57
1865 2124 9.461312 AAGTAACTACATATGGAGCAAAATGAA 57.539 29.630 15.30 0.00 0.00 2.57
1866 2125 9.632638 AGTAACTACATATGGAGCAAAATGAAT 57.367 29.630 15.30 0.00 0.00 2.57
1867 2126 9.669353 GTAACTACATATGGAGCAAAATGAATG 57.331 33.333 15.30 0.00 0.00 2.67
1868 2127 8.523915 AACTACATATGGAGCAAAATGAATGA 57.476 30.769 15.30 0.00 0.00 2.57
1869 2128 8.523915 ACTACATATGGAGCAAAATGAATGAA 57.476 30.769 15.30 0.00 0.00 2.57
1870 2129 9.139734 ACTACATATGGAGCAAAATGAATGAAT 57.860 29.630 15.30 0.00 0.00 2.57
1871 2130 9.622004 CTACATATGGAGCAAAATGAATGAATC 57.378 33.333 0.89 0.00 0.00 2.52
1872 2131 8.246430 ACATATGGAGCAAAATGAATGAATCT 57.754 30.769 7.80 0.00 0.00 2.40
1873 2132 9.358406 ACATATGGAGCAAAATGAATGAATCTA 57.642 29.630 7.80 0.00 0.00 1.98
1874 2133 9.622004 CATATGGAGCAAAATGAATGAATCTAC 57.378 33.333 0.00 0.00 0.00 2.59
1875 2134 7.649533 ATGGAGCAAAATGAATGAATCTACA 57.350 32.000 0.00 0.00 0.00 2.74
1876 2135 6.855836 TGGAGCAAAATGAATGAATCTACAC 58.144 36.000 0.00 0.00 0.00 2.90
1877 2136 6.660521 TGGAGCAAAATGAATGAATCTACACT 59.339 34.615 0.00 0.00 0.00 3.55
1878 2137 7.148188 TGGAGCAAAATGAATGAATCTACACTC 60.148 37.037 0.00 0.00 0.00 3.51
1879 2138 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
1880 2139 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
1881 2140 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
2035 2297 5.362143 AGATCTGCTTCTAGTACATTGCTCA 59.638 40.000 0.00 0.00 0.00 4.26
2155 4053 5.519206 GGATCGTAGTCCTTACACAACATTC 59.481 44.000 0.00 0.00 35.32 2.67
2158 4056 4.561938 CGTAGTCCTTACACAACATTCCCA 60.562 45.833 0.00 0.00 32.27 4.37
2159 4057 4.657814 AGTCCTTACACAACATTCCCAT 57.342 40.909 0.00 0.00 0.00 4.00
2160 4058 5.772393 AGTCCTTACACAACATTCCCATA 57.228 39.130 0.00 0.00 0.00 2.74
2161 4059 6.327386 AGTCCTTACACAACATTCCCATAT 57.673 37.500 0.00 0.00 0.00 1.78
2162 4060 6.731467 AGTCCTTACACAACATTCCCATATT 58.269 36.000 0.00 0.00 0.00 1.28
2163 4061 7.867921 AGTCCTTACACAACATTCCCATATTA 58.132 34.615 0.00 0.00 0.00 0.98
2213 4111 6.433847 TTCCATAGTAATGATGTACCAGGG 57.566 41.667 0.00 0.00 34.84 4.45
2254 4152 0.942252 GGTCCACCACGAACTTTGTC 59.058 55.000 0.00 0.00 35.64 3.18
2295 4193 6.774656 ACAAATCAGTTCATTTCTTCTGTCCT 59.225 34.615 0.00 0.00 0.00 3.85
2300 4198 5.300286 CAGTTCATTTCTTCTGTCCTGGTTT 59.700 40.000 0.00 0.00 0.00 3.27
2302 4200 6.039829 AGTTCATTTCTTCTGTCCTGGTTTTC 59.960 38.462 0.00 0.00 0.00 2.29
2333 4231 2.568623 TGCACTTCTCTCTTTTCCCC 57.431 50.000 0.00 0.00 0.00 4.81
2378 4276 7.965107 CCTAAATTGTTGATTGCTACTGACTTC 59.035 37.037 0.00 0.00 0.00 3.01
2388 4286 4.738124 TGCTACTGACTTCAATCTTCTCG 58.262 43.478 0.00 0.00 0.00 4.04
2398 4296 4.668576 TCAATCTTCTCGACATGCAAAC 57.331 40.909 0.00 0.00 0.00 2.93
2643 4550 7.961855 TCATTGAAATAATTGCAACCAATTCG 58.038 30.769 0.00 0.00 45.99 3.34
2673 4580 2.355132 CACGCGAGGTAACATCTCTAGT 59.645 50.000 15.93 0.00 41.41 2.57
2758 4665 0.981183 TAGCCAAACTCATGACGGGT 59.019 50.000 0.00 0.00 0.00 5.28
2801 4708 4.893424 TGCGCTAAAGTCAAGTCTTTTT 57.107 36.364 9.73 0.00 38.40 1.94
2961 4873 1.826385 AAGGGTCCTTTTGAGCATCG 58.174 50.000 0.00 0.00 43.44 3.84
3047 4967 4.226761 GCTATTTTGACAACACCTTTCCG 58.773 43.478 0.00 0.00 0.00 4.30
3102 5025 0.035915 GGAACAAGGCTCCAGGACTC 60.036 60.000 0.00 0.00 32.77 3.36
3123 5046 5.187967 ACTCGATGAGTTCCCTACTGAATTT 59.812 40.000 0.00 0.00 40.28 1.82
3213 5136 7.254227 TGATGTATTATTGTTCCGCCTTAAC 57.746 36.000 0.00 0.00 0.00 2.01
3219 5142 2.351706 TGTTCCGCCTTAACTTTGGT 57.648 45.000 0.00 0.00 0.00 3.67
3260 5183 3.274288 AGAAGGAAGATGCATTTCGGAC 58.726 45.455 0.00 2.59 0.00 4.79
3261 5184 3.054802 AGAAGGAAGATGCATTTCGGACT 60.055 43.478 0.00 4.53 0.00 3.85
3262 5185 2.911484 AGGAAGATGCATTTCGGACTC 58.089 47.619 0.00 0.00 0.00 3.36
3265 5188 3.265791 GAAGATGCATTTCGGACTCAGT 58.734 45.455 0.00 0.00 0.00 3.41
3266 5189 3.340814 AGATGCATTTCGGACTCAGTT 57.659 42.857 0.00 0.00 0.00 3.16
3267 5190 3.005554 AGATGCATTTCGGACTCAGTTG 58.994 45.455 0.00 0.00 0.00 3.16
3274 5197 3.812156 TTCGGACTCAGTTGTTCAGAA 57.188 42.857 0.00 0.00 0.00 3.02
3275 5198 4.336889 TTCGGACTCAGTTGTTCAGAAT 57.663 40.909 0.00 0.00 0.00 2.40
3279 5202 7.165460 TCGGACTCAGTTGTTCAGAATTATA 57.835 36.000 0.00 0.00 0.00 0.98
3286 5209 9.282247 CTCAGTTGTTCAGAATTATATGTTTGC 57.718 33.333 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 3.245284 ACGACAGTGTTCAGAATTGTTCG 59.755 43.478 0.00 0.00 34.02 3.95
179 182 9.003658 ACTATCAAATGTGACCTTTCAAGTAAG 57.996 33.333 0.00 0.00 36.31 2.34
248 251 7.201750 CCTTTTCGTTCCCATTATATTTCCGAA 60.202 37.037 0.00 0.00 0.00 4.30
249 252 6.261381 CCTTTTCGTTCCCATTATATTTCCGA 59.739 38.462 0.00 0.00 0.00 4.55
288 291 0.248866 CGCGCTTGGTTTCCTGTTTT 60.249 50.000 5.56 0.00 0.00 2.43
296 299 3.276846 AGTTCGCGCGCTTGGTTT 61.277 55.556 30.48 6.70 0.00 3.27
344 349 6.938030 TCATACTACCACATTTCTCCGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
353 358 5.353394 TGACCCTCATACTACCACATTTC 57.647 43.478 0.00 0.00 0.00 2.17
420 425 4.344865 AGGTGGCGCGGATGGTTT 62.345 61.111 8.83 0.00 0.00 3.27
521 526 3.114065 GCAACTAGTTAACGAGCGCTAT 58.886 45.455 11.50 1.76 0.00 2.97
522 527 2.163010 AGCAACTAGTTAACGAGCGCTA 59.837 45.455 23.06 0.00 32.05 4.26
549 556 2.760374 CTTCTTTCAGTGCGGTCTTCT 58.240 47.619 0.00 0.00 0.00 2.85
550 557 1.195674 GCTTCTTTCAGTGCGGTCTTC 59.804 52.381 0.00 0.00 0.00 2.87
551 558 1.230324 GCTTCTTTCAGTGCGGTCTT 58.770 50.000 0.00 0.00 0.00 3.01
552 559 0.603975 GGCTTCTTTCAGTGCGGTCT 60.604 55.000 0.00 0.00 0.00 3.85
553 560 0.884704 TGGCTTCTTTCAGTGCGGTC 60.885 55.000 0.00 0.00 0.00 4.79
554 561 1.148273 TGGCTTCTTTCAGTGCGGT 59.852 52.632 0.00 0.00 0.00 5.68
555 562 1.576421 GTGGCTTCTTTCAGTGCGG 59.424 57.895 0.00 0.00 0.00 5.69
556 563 1.205064 CGTGGCTTCTTTCAGTGCG 59.795 57.895 0.00 0.00 0.00 5.34
557 564 1.576421 CCGTGGCTTCTTTCAGTGC 59.424 57.895 0.00 0.00 0.00 4.40
558 565 1.856265 GCCCGTGGCTTCTTTCAGTG 61.856 60.000 7.58 0.00 46.69 3.66
559 566 1.600916 GCCCGTGGCTTCTTTCAGT 60.601 57.895 7.58 0.00 46.69 3.41
560 567 3.267974 GCCCGTGGCTTCTTTCAG 58.732 61.111 7.58 0.00 46.69 3.02
580 587 0.454196 GCTGACGAGGAGAAGGAGAC 59.546 60.000 0.00 0.00 0.00 3.36
581 588 0.038310 TGCTGACGAGGAGAAGGAGA 59.962 55.000 0.00 0.00 0.00 3.71
582 589 0.891373 TTGCTGACGAGGAGAAGGAG 59.109 55.000 0.00 0.00 0.00 3.69
583 590 0.603569 GTTGCTGACGAGGAGAAGGA 59.396 55.000 0.00 0.00 0.00 3.36
584 591 0.390472 GGTTGCTGACGAGGAGAAGG 60.390 60.000 0.00 0.00 0.00 3.46
585 592 0.390472 GGGTTGCTGACGAGGAGAAG 60.390 60.000 0.00 0.00 0.00 2.85
586 593 1.118965 TGGGTTGCTGACGAGGAGAA 61.119 55.000 0.00 0.00 0.00 2.87
587 594 0.904865 ATGGGTTGCTGACGAGGAGA 60.905 55.000 0.00 0.00 0.00 3.71
588 595 0.742281 CATGGGTTGCTGACGAGGAG 60.742 60.000 0.00 0.00 0.00 3.69
589 596 1.296392 CATGGGTTGCTGACGAGGA 59.704 57.895 0.00 0.00 0.00 3.71
590 597 0.606401 AACATGGGTTGCTGACGAGG 60.606 55.000 0.00 0.00 35.46 4.63
591 598 0.798776 GAACATGGGTTGCTGACGAG 59.201 55.000 0.00 0.00 37.36 4.18
592 599 0.605319 GGAACATGGGTTGCTGACGA 60.605 55.000 0.00 0.00 41.60 4.20
593 600 1.875963 GGAACATGGGTTGCTGACG 59.124 57.895 0.00 0.00 41.60 4.35
594 601 1.586154 CCGGAACATGGGTTGCTGAC 61.586 60.000 0.00 0.00 42.55 3.51
595 602 1.303236 CCGGAACATGGGTTGCTGA 60.303 57.895 0.00 0.00 42.55 4.26
596 603 2.342650 CCCGGAACATGGGTTGCTG 61.343 63.158 0.73 0.00 42.55 4.41
597 604 2.035626 CCCGGAACATGGGTTGCT 59.964 61.111 0.73 0.00 42.55 3.91
598 605 3.068064 CCCCGGAACATGGGTTGC 61.068 66.667 0.73 0.00 45.86 4.17
599 606 0.965363 CTTCCCCGGAACATGGGTTG 60.965 60.000 0.73 0.00 45.86 3.77
600 607 1.382629 CTTCCCCGGAACATGGGTT 59.617 57.895 0.73 0.00 45.86 4.11
601 608 3.087065 CTTCCCCGGAACATGGGT 58.913 61.111 0.73 0.00 45.86 4.51
602 609 2.440247 GCTTCCCCGGAACATGGG 60.440 66.667 0.73 0.00 46.93 4.00
603 610 1.000896 AAGCTTCCCCGGAACATGG 60.001 57.895 0.73 0.00 0.00 3.66
604 611 1.032114 GGAAGCTTCCCCGGAACATG 61.032 60.000 31.91 0.00 41.62 3.21
605 612 1.303282 GGAAGCTTCCCCGGAACAT 59.697 57.895 31.91 0.00 41.62 2.71
606 613 2.754375 GGAAGCTTCCCCGGAACA 59.246 61.111 31.91 0.00 41.62 3.18
615 622 1.357991 GCTGCTGACGAGGAAGCTTC 61.358 60.000 18.54 18.54 40.21 3.86
616 623 1.375268 GCTGCTGACGAGGAAGCTT 60.375 57.895 0.00 0.00 40.21 3.74
617 624 2.264166 GCTGCTGACGAGGAAGCT 59.736 61.111 0.00 0.00 40.21 3.74
618 625 2.817396 GGCTGCTGACGAGGAAGC 60.817 66.667 0.00 0.00 39.96 3.86
619 626 2.125350 GGGCTGCTGACGAGGAAG 60.125 66.667 0.00 0.00 0.00 3.46
620 627 2.293318 ATGGGCTGCTGACGAGGAA 61.293 57.895 0.00 0.00 0.00 3.36
621 628 2.685017 ATGGGCTGCTGACGAGGA 60.685 61.111 0.00 0.00 0.00 3.71
622 629 2.513204 CATGGGCTGCTGACGAGG 60.513 66.667 0.00 0.00 0.00 4.63
623 630 1.812922 GACATGGGCTGCTGACGAG 60.813 63.158 0.00 0.00 0.00 4.18
624 631 2.265739 GACATGGGCTGCTGACGA 59.734 61.111 0.00 0.00 0.00 4.20
625 632 2.821366 GGACATGGGCTGCTGACG 60.821 66.667 0.00 0.00 0.00 4.35
626 633 2.821366 CGGACATGGGCTGCTGAC 60.821 66.667 0.00 0.00 0.00 3.51
627 634 3.002583 TCGGACATGGGCTGCTGA 61.003 61.111 0.00 0.00 0.00 4.26
628 635 2.821366 GTCGGACATGGGCTGCTG 60.821 66.667 2.62 0.00 0.00 4.41
629 636 3.005539 AGTCGGACATGGGCTGCT 61.006 61.111 11.27 0.00 0.00 4.24
630 637 2.512515 GAGTCGGACATGGGCTGC 60.513 66.667 11.27 0.00 0.00 5.25
631 638 2.202797 CGAGTCGGACATGGGCTG 60.203 66.667 11.27 0.00 0.00 4.85
632 639 4.148825 GCGAGTCGGACATGGGCT 62.149 66.667 15.52 0.00 0.00 5.19
634 641 4.129737 ACGCGAGTCGGACATGGG 62.130 66.667 15.93 12.17 44.19 4.00
650 657 3.056313 GATCCAGCAAGGCGGCAAC 62.056 63.158 13.08 0.00 37.29 4.17
651 658 2.751436 GATCCAGCAAGGCGGCAA 60.751 61.111 13.08 0.00 37.29 4.52
652 659 4.802051 GGATCCAGCAAGGCGGCA 62.802 66.667 13.08 0.00 37.29 5.69
654 661 4.161295 TCGGATCCAGCAAGGCGG 62.161 66.667 13.41 0.00 37.29 6.13
655 662 2.587194 CTCGGATCCAGCAAGGCG 60.587 66.667 13.41 0.00 37.29 5.52
656 663 1.522580 GACTCGGATCCAGCAAGGC 60.523 63.158 13.41 1.36 37.29 4.35
657 664 0.179089 CTGACTCGGATCCAGCAAGG 60.179 60.000 13.41 0.00 39.47 3.61
658 665 3.359194 CTGACTCGGATCCAGCAAG 57.641 57.895 13.41 5.76 0.00 4.01
662 669 1.226802 CGTGCTGACTCGGATCCAG 60.227 63.158 13.41 10.80 0.00 3.86
663 670 0.678684 TACGTGCTGACTCGGATCCA 60.679 55.000 13.41 0.00 37.11 3.41
664 671 0.029567 CTACGTGCTGACTCGGATCC 59.970 60.000 0.00 0.00 37.11 3.36
665 672 0.733729 ACTACGTGCTGACTCGGATC 59.266 55.000 0.00 0.00 37.11 3.36
666 673 1.941294 CTACTACGTGCTGACTCGGAT 59.059 52.381 0.00 0.00 37.11 4.18
667 674 1.338484 ACTACTACGTGCTGACTCGGA 60.338 52.381 0.00 0.00 37.11 4.55
668 675 1.085091 ACTACTACGTGCTGACTCGG 58.915 55.000 0.00 0.00 37.11 4.63
669 676 1.463831 ACACTACTACGTGCTGACTCG 59.536 52.381 0.00 0.00 38.45 4.18
670 677 3.555917 AACACTACTACGTGCTGACTC 57.444 47.619 0.00 0.00 38.45 3.36
671 678 4.296690 GAAAACACTACTACGTGCTGACT 58.703 43.478 0.00 0.00 38.45 3.41
672 679 3.119136 CGAAAACACTACTACGTGCTGAC 59.881 47.826 0.00 0.00 38.45 3.51
673 680 3.243168 ACGAAAACACTACTACGTGCTGA 60.243 43.478 0.00 0.00 38.45 4.26
674 681 3.047796 ACGAAAACACTACTACGTGCTG 58.952 45.455 0.00 0.00 38.45 4.41
675 682 3.360249 ACGAAAACACTACTACGTGCT 57.640 42.857 0.00 0.00 38.45 4.40
676 683 5.357889 GTTTACGAAAACACTACTACGTGC 58.642 41.667 0.00 0.00 43.73 5.34
690 697 9.546909 CGAAGTACTCTAGTAATGTTTACGAAA 57.453 33.333 0.00 0.00 31.52 3.46
691 698 8.935844 TCGAAGTACTCTAGTAATGTTTACGAA 58.064 33.333 0.00 0.00 31.52 3.85
692 699 8.479313 TCGAAGTACTCTAGTAATGTTTACGA 57.521 34.615 0.00 0.00 31.52 3.43
693 700 9.713740 ATTCGAAGTACTCTAGTAATGTTTACG 57.286 33.333 3.35 0.00 31.52 3.18
696 703 9.733219 GCTATTCGAAGTACTCTAGTAATGTTT 57.267 33.333 3.35 0.00 31.52 2.83
697 704 8.900781 TGCTATTCGAAGTACTCTAGTAATGTT 58.099 33.333 3.35 0.00 31.52 2.71
698 705 8.447924 TGCTATTCGAAGTACTCTAGTAATGT 57.552 34.615 3.35 0.00 31.52 2.71
699 706 9.900710 AATGCTATTCGAAGTACTCTAGTAATG 57.099 33.333 3.35 0.00 31.52 1.90
701 708 9.947669 GAAATGCTATTCGAAGTACTCTAGTAA 57.052 33.333 3.35 0.00 31.52 2.24
702 709 9.339850 AGAAATGCTATTCGAAGTACTCTAGTA 57.660 33.333 3.35 0.00 34.46 1.82
703 710 8.228035 AGAAATGCTATTCGAAGTACTCTAGT 57.772 34.615 3.35 0.00 34.46 2.57
704 711 7.532546 CGAGAAATGCTATTCGAAGTACTCTAG 59.467 40.741 3.35 0.29 35.19 2.43
705 712 7.012138 ACGAGAAATGCTATTCGAAGTACTCTA 59.988 37.037 3.35 0.00 36.89 2.43
706 713 6.183360 ACGAGAAATGCTATTCGAAGTACTCT 60.183 38.462 3.35 0.00 36.89 3.24
707 714 5.972382 ACGAGAAATGCTATTCGAAGTACTC 59.028 40.000 3.35 3.50 36.89 2.59
708 715 5.892568 ACGAGAAATGCTATTCGAAGTACT 58.107 37.500 3.35 0.00 36.89 2.73
709 716 5.742453 TGACGAGAAATGCTATTCGAAGTAC 59.258 40.000 3.35 0.00 36.89 2.73
710 717 5.886992 TGACGAGAAATGCTATTCGAAGTA 58.113 37.500 3.35 0.00 36.89 2.24
711 718 4.744570 TGACGAGAAATGCTATTCGAAGT 58.255 39.130 3.35 0.00 36.89 3.01
712 719 5.516696 TCTTGACGAGAAATGCTATTCGAAG 59.483 40.000 3.35 0.00 36.89 3.79
713 720 5.407502 TCTTGACGAGAAATGCTATTCGAA 58.592 37.500 0.00 0.00 36.89 3.71
714 721 4.993905 TCTTGACGAGAAATGCTATTCGA 58.006 39.130 0.00 0.00 36.89 3.71
715 722 5.037385 TCTCTTGACGAGAAATGCTATTCG 58.963 41.667 0.00 0.00 45.55 3.34
726 733 1.686587 TGCACCTTTCTCTTGACGAGA 59.313 47.619 0.00 0.00 46.82 4.04
727 734 1.795286 GTGCACCTTTCTCTTGACGAG 59.205 52.381 5.22 0.00 41.30 4.18
728 735 1.540363 GGTGCACCTTTCTCTTGACGA 60.540 52.381 29.12 0.00 0.00 4.20
729 736 0.868406 GGTGCACCTTTCTCTTGACG 59.132 55.000 29.12 0.00 0.00 4.35
730 737 0.868406 CGGTGCACCTTTCTCTTGAC 59.132 55.000 32.28 2.75 0.00 3.18
731 738 0.884704 GCGGTGCACCTTTCTCTTGA 60.885 55.000 32.28 0.00 0.00 3.02
732 739 1.576421 GCGGTGCACCTTTCTCTTG 59.424 57.895 32.28 15.80 0.00 3.02
733 740 1.961277 CGCGGTGCACCTTTCTCTT 60.961 57.895 32.28 0.00 0.00 2.85
734 741 2.357517 CGCGGTGCACCTTTCTCT 60.358 61.111 32.28 0.00 0.00 3.10
735 742 4.090057 GCGCGGTGCACCTTTCTC 62.090 66.667 32.28 13.22 45.45 2.87
744 751 4.776647 GGAACCAATGCGCGGTGC 62.777 66.667 8.83 6.58 46.70 5.01
745 752 3.055719 AGGAACCAATGCGCGGTG 61.056 61.111 8.83 4.68 36.67 4.94
746 753 3.055719 CAGGAACCAATGCGCGGT 61.056 61.111 8.83 0.03 38.85 5.68
747 754 2.625823 AACAGGAACCAATGCGCGG 61.626 57.895 8.83 0.00 0.00 6.46
748 755 1.442520 CAACAGGAACCAATGCGCG 60.443 57.895 0.00 0.00 0.00 6.86
749 756 1.734117 GCAACAGGAACCAATGCGC 60.734 57.895 0.00 0.00 0.00 6.09
750 757 0.387622 CTGCAACAGGAACCAATGCG 60.388 55.000 0.00 0.00 39.81 4.73
751 758 0.675633 ACTGCAACAGGAACCAATGC 59.324 50.000 0.00 8.01 35.51 3.56
752 759 1.000060 CCACTGCAACAGGAACCAATG 60.000 52.381 0.00 0.00 35.51 2.82
753 760 1.331214 CCACTGCAACAGGAACCAAT 58.669 50.000 0.00 0.00 35.51 3.16
754 761 0.754957 CCCACTGCAACAGGAACCAA 60.755 55.000 0.00 0.00 35.51 3.67
755 762 1.152777 CCCACTGCAACAGGAACCA 60.153 57.895 0.00 0.00 35.51 3.67
756 763 1.152756 ACCCACTGCAACAGGAACC 60.153 57.895 2.73 0.00 35.51 3.62
757 764 2.032981 CACCCACTGCAACAGGAAC 58.967 57.895 2.73 0.00 35.51 3.62
758 765 1.827789 GCACCCACTGCAACAGGAA 60.828 57.895 2.73 0.00 46.29 3.36
759 766 2.203337 GCACCCACTGCAACAGGA 60.203 61.111 2.73 0.00 46.29 3.86
818 835 1.866853 GCCAAGTGGAAGGAAAGCGG 61.867 60.000 0.18 0.00 37.39 5.52
821 838 0.250727 TCGGCCAAGTGGAAGGAAAG 60.251 55.000 2.24 0.00 37.39 2.62
822 839 0.404040 ATCGGCCAAGTGGAAGGAAA 59.596 50.000 2.24 0.00 37.39 3.13
826 843 1.373570 GAGAATCGGCCAAGTGGAAG 58.626 55.000 2.24 0.00 37.39 3.46
829 846 1.452108 GGGAGAATCGGCCAAGTGG 60.452 63.158 2.24 0.00 34.37 4.00
835 852 2.417936 GAGACGGGAGAATCGGCC 59.582 66.667 0.00 0.00 36.06 6.13
848 865 1.082756 CAACAAAGCACGCGGAGAC 60.083 57.895 12.47 0.00 0.00 3.36
850 867 1.082756 GACAACAAAGCACGCGGAG 60.083 57.895 12.47 3.23 0.00 4.63
852 869 1.369209 CAGACAACAAAGCACGCGG 60.369 57.895 12.47 0.00 0.00 6.46
853 870 1.369209 CCAGACAACAAAGCACGCG 60.369 57.895 3.53 3.53 0.00 6.01
887 904 5.896678 TCCTTTCAAACTGGAAATTTCTCCA 59.103 36.000 17.42 8.32 43.45 3.86
889 906 5.915196 CGTCCTTTCAAACTGGAAATTTCTC 59.085 40.000 17.42 8.61 36.29 2.87
920 937 4.630644 TGAAGTGAGGAGAAATTGAGCT 57.369 40.909 0.00 0.00 0.00 4.09
921 938 4.940046 TGATGAAGTGAGGAGAAATTGAGC 59.060 41.667 0.00 0.00 0.00 4.26
926 943 6.779539 ACCTTTTTGATGAAGTGAGGAGAAAT 59.220 34.615 0.00 0.00 0.00 2.17
932 949 5.065914 TCAGACCTTTTTGATGAAGTGAGG 58.934 41.667 0.00 0.00 0.00 3.86
933 950 6.261826 AGTTCAGACCTTTTTGATGAAGTGAG 59.738 38.462 0.00 0.00 33.45 3.51
937 954 6.694411 CACAAGTTCAGACCTTTTTGATGAAG 59.306 38.462 0.00 0.00 30.99 3.02
977 995 2.441750 GGGTATGGGTGTGGATGTGTAT 59.558 50.000 0.00 0.00 0.00 2.29
979 997 0.623723 GGGTATGGGTGTGGATGTGT 59.376 55.000 0.00 0.00 0.00 3.72
980 998 0.623194 TGGGTATGGGTGTGGATGTG 59.377 55.000 0.00 0.00 0.00 3.21
981 999 0.623723 GTGGGTATGGGTGTGGATGT 59.376 55.000 0.00 0.00 0.00 3.06
982 1000 0.623194 TGTGGGTATGGGTGTGGATG 59.377 55.000 0.00 0.00 0.00 3.51
983 1001 0.623723 GTGTGGGTATGGGTGTGGAT 59.376 55.000 0.00 0.00 0.00 3.41
984 1002 1.493854 GGTGTGGGTATGGGTGTGGA 61.494 60.000 0.00 0.00 0.00 4.02
994 1012 3.315949 GAGTGCGGGGTGTGGGTA 61.316 66.667 0.00 0.00 0.00 3.69
1006 1024 1.009675 CACACAAAGTGCGGAGTGC 60.010 57.895 0.00 0.00 42.15 4.40
1023 1041 3.742327 GCTCTGATGTATGGCTACTTGCA 60.742 47.826 0.00 0.00 45.15 4.08
1025 1043 4.333913 AGCTCTGATGTATGGCTACTTG 57.666 45.455 0.00 0.00 0.00 3.16
1033 1051 5.530543 TCTCAGTCACTAGCTCTGATGTATG 59.469 44.000 10.91 0.00 37.54 2.39
1040 1058 2.159393 GCAGTCTCAGTCACTAGCTCTG 60.159 54.545 0.00 0.00 0.00 3.35
1043 1061 0.808125 CGCAGTCTCAGTCACTAGCT 59.192 55.000 0.00 0.00 0.00 3.32
1044 1062 0.179150 CCGCAGTCTCAGTCACTAGC 60.179 60.000 0.00 0.00 0.00 3.42
1045 1063 0.453793 CCCGCAGTCTCAGTCACTAG 59.546 60.000 0.00 0.00 0.00 2.57
1046 1064 0.251209 ACCCGCAGTCTCAGTCACTA 60.251 55.000 0.00 0.00 0.00 2.74
1047 1065 1.528292 GACCCGCAGTCTCAGTCACT 61.528 60.000 0.00 0.00 42.69 3.41
1048 1066 1.080434 GACCCGCAGTCTCAGTCAC 60.080 63.158 0.00 0.00 42.69 3.67
1104 1123 1.529244 GTGGGAGGTGCAACAGCTT 60.529 57.895 3.64 0.00 42.53 3.74
1135 1154 1.308069 GCTGTGTTGGCGGATCATGT 61.308 55.000 0.00 0.00 0.00 3.21
1150 1169 2.604686 TCTTCCTCGGGCTGCTGT 60.605 61.111 0.00 0.00 0.00 4.40
1224 1243 3.637998 GTGGACACGAGAAGTTAGTGA 57.362 47.619 11.17 0.00 39.04 3.41
1245 1264 1.811679 GCAGTAGGAAGCGGCAGAC 60.812 63.158 1.45 0.00 0.00 3.51
1246 1265 1.617018 ATGCAGTAGGAAGCGGCAGA 61.617 55.000 1.45 0.00 40.03 4.26
1247 1266 1.153289 ATGCAGTAGGAAGCGGCAG 60.153 57.895 1.45 0.00 40.03 4.85
1261 1280 2.813474 CCGTTCGCCGAAGATGCA 60.813 61.111 0.00 0.00 39.56 3.96
1288 1388 3.295304 CTGGTGATCACGCGGTCCA 62.295 63.158 19.33 9.78 0.00 4.02
1358 1467 1.568504 TCAAGGTAGCGAGGACCATT 58.431 50.000 0.00 0.00 39.65 3.16
1441 1550 1.566231 AGATGGTGAAGGGGTTGATCC 59.434 52.381 0.00 0.00 0.00 3.36
1583 1692 0.548031 CCTTGATCTTGGCCAGCCTA 59.452 55.000 5.11 0.80 36.94 3.93
1748 1857 3.558321 CGTCCCAGAAGTATTTCCCACAA 60.558 47.826 0.00 0.00 33.64 3.33
1790 1903 1.985895 AGGAACGGAGGGAGTGATTTT 59.014 47.619 0.00 0.00 0.00 1.82
1795 1908 4.957684 ATATTTAGGAACGGAGGGAGTG 57.042 45.455 0.00 0.00 0.00 3.51
1818 2077 5.927115 ACTTGTTGAAATCTCTACGAAGACC 59.073 40.000 0.00 0.00 30.78 3.85
1820 2079 8.358148 AGTTACTTGTTGAAATCTCTACGAAGA 58.642 33.333 0.00 0.00 30.78 2.87
1821 2080 8.522178 AGTTACTTGTTGAAATCTCTACGAAG 57.478 34.615 0.00 0.00 30.78 3.79
1822 2081 9.403110 GTAGTTACTTGTTGAAATCTCTACGAA 57.597 33.333 0.00 0.00 30.78 3.85
1823 2082 8.570488 TGTAGTTACTTGTTGAAATCTCTACGA 58.430 33.333 0.00 0.00 30.78 3.43
1824 2083 8.738199 TGTAGTTACTTGTTGAAATCTCTACG 57.262 34.615 0.00 0.00 30.78 3.51
1831 2090 8.893727 GCTCCATATGTAGTTACTTGTTGAAAT 58.106 33.333 1.24 0.00 0.00 2.17
1832 2091 7.880713 TGCTCCATATGTAGTTACTTGTTGAAA 59.119 33.333 1.24 0.00 0.00 2.69
1833 2092 7.390823 TGCTCCATATGTAGTTACTTGTTGAA 58.609 34.615 1.24 0.00 0.00 2.69
1835 2094 7.609760 TTGCTCCATATGTAGTTACTTGTTG 57.390 36.000 1.24 0.00 0.00 3.33
1836 2095 8.630054 TTTTGCTCCATATGTAGTTACTTGTT 57.370 30.769 1.24 0.00 0.00 2.83
1838 2097 8.892723 TCATTTTGCTCCATATGTAGTTACTTG 58.107 33.333 1.24 0.00 0.00 3.16
1839 2098 9.461312 TTCATTTTGCTCCATATGTAGTTACTT 57.539 29.630 1.24 0.00 0.00 2.24
1841 2100 9.669353 CATTCATTTTGCTCCATATGTAGTTAC 57.331 33.333 1.24 0.00 0.00 2.50
1843 2102 8.523915 TCATTCATTTTGCTCCATATGTAGTT 57.476 30.769 1.24 0.00 0.00 2.24
1844 2103 8.523915 TTCATTCATTTTGCTCCATATGTAGT 57.476 30.769 1.24 0.00 0.00 2.73
1846 2105 9.358406 AGATTCATTCATTTTGCTCCATATGTA 57.642 29.630 1.24 0.00 0.00 2.29
1848 2107 9.622004 GTAGATTCATTCATTTTGCTCCATATG 57.378 33.333 0.00 0.00 0.00 1.78
1850 2109 8.623903 GTGTAGATTCATTCATTTTGCTCCATA 58.376 33.333 0.00 0.00 0.00 2.74
1851 2110 7.341256 AGTGTAGATTCATTCATTTTGCTCCAT 59.659 33.333 0.00 0.00 0.00 3.41
1852 2111 6.660521 AGTGTAGATTCATTCATTTTGCTCCA 59.339 34.615 0.00 0.00 0.00 3.86
1853 2112 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
1854 2113 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
1855 2114 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
1929 2188 9.338622 CCCTCCGTTCATAAATATAAGTCTTTT 57.661 33.333 0.00 0.00 0.00 2.27
1930 2189 8.711170 TCCCTCCGTTCATAAATATAAGTCTTT 58.289 33.333 0.00 0.00 0.00 2.52
1931 2190 8.258850 TCCCTCCGTTCATAAATATAAGTCTT 57.741 34.615 0.00 0.00 0.00 3.01
1932 2191 7.509659 ACTCCCTCCGTTCATAAATATAAGTCT 59.490 37.037 0.00 0.00 0.00 3.24
1933 2192 7.668492 ACTCCCTCCGTTCATAAATATAAGTC 58.332 38.462 0.00 0.00 0.00 3.01
1934 2193 7.613551 ACTCCCTCCGTTCATAAATATAAGT 57.386 36.000 0.00 0.00 0.00 2.24
1943 2202 5.057843 ACATACTACTCCCTCCGTTCATA 57.942 43.478 0.00 0.00 0.00 2.15
1944 2203 3.912248 ACATACTACTCCCTCCGTTCAT 58.088 45.455 0.00 0.00 0.00 2.57
1945 2204 3.377253 ACATACTACTCCCTCCGTTCA 57.623 47.619 0.00 0.00 0.00 3.18
1947 2206 4.999950 CGTATACATACTACTCCCTCCGTT 59.000 45.833 3.32 0.00 0.00 4.44
2035 2297 6.666678 AGATGAAGGTACACAAATCATCCAT 58.333 36.000 15.75 0.00 44.66 3.41
2159 4057 9.451002 TCCCACGAATCAAACAAGTAATTAATA 57.549 29.630 0.00 0.00 0.00 0.98
2160 4058 8.343168 TCCCACGAATCAAACAAGTAATTAAT 57.657 30.769 0.00 0.00 0.00 1.40
2161 4059 7.747155 TCCCACGAATCAAACAAGTAATTAA 57.253 32.000 0.00 0.00 0.00 1.40
2162 4060 7.747155 TTCCCACGAATCAAACAAGTAATTA 57.253 32.000 0.00 0.00 0.00 1.40
2163 4061 6.642707 TTCCCACGAATCAAACAAGTAATT 57.357 33.333 0.00 0.00 0.00 1.40
2179 4077 6.881065 ATCATTACTATGGAATGATTCCCACG 59.119 38.462 20.77 11.10 46.90 4.94
2208 4106 4.947388 TGGATTCTTACGAAATTTCCCTGG 59.053 41.667 12.54 1.20 31.91 4.45
2213 4111 6.376177 ACCGTTTGGATTCTTACGAAATTTC 58.624 36.000 8.20 8.20 39.21 2.17
2235 4133 0.942252 GACAAAGTTCGTGGTGGACC 59.058 55.000 0.00 0.00 0.00 4.46
2236 4134 1.949465 AGACAAAGTTCGTGGTGGAC 58.051 50.000 0.00 0.00 0.00 4.02
2254 4152 7.138736 ACTGATTTGTTTCAACGGATTGTAAG 58.861 34.615 0.00 0.00 37.11 2.34
2295 4193 2.744494 GCATGTGCAAAAGGGAAAACCA 60.744 45.455 0.00 0.00 40.88 3.67
2359 4257 6.233434 AGATTGAAGTCAGTAGCAATCAACA 58.767 36.000 14.48 0.00 45.48 3.33
2378 4276 4.408993 TGTTTGCATGTCGAGAAGATTG 57.591 40.909 0.00 0.00 0.00 2.67
2398 4296 2.388310 TGGCATGTTGAATTGGCATG 57.612 45.000 3.78 8.35 42.67 4.06
2403 4301 2.816204 TGTGGTGGCATGTTGAATTG 57.184 45.000 0.00 0.00 0.00 2.32
2407 4305 1.992538 TTCATGTGGTGGCATGTTGA 58.007 45.000 0.00 0.00 44.68 3.18
2439 4339 3.002862 TGAGTTGACACGGTTGCATTAAC 59.997 43.478 0.00 0.00 38.60 2.01
2487 4387 5.543507 ACATGGTGCATTTTAAAGGTGAA 57.456 34.783 0.00 0.00 0.00 3.18
2488 4388 6.629128 CATACATGGTGCATTTTAAAGGTGA 58.371 36.000 0.00 0.00 0.00 4.02
2501 4401 5.066375 TGAATTTGAGTAGCATACATGGTGC 59.934 40.000 15.20 15.20 46.26 5.01
2643 4550 4.374702 CCTCGCGTGTTGCTGCAC 62.375 66.667 5.77 0.00 43.27 4.57
2673 4580 8.167392 TGAAAAGGGGTGAGAATTCTACATAAA 58.833 33.333 8.25 0.00 0.00 1.40
2685 4592 0.776810 TGCCATGAAAAGGGGTGAGA 59.223 50.000 0.00 0.00 0.00 3.27
2754 4661 5.941948 AGACAATTTTAACTCTTCACCCG 57.058 39.130 0.00 0.00 0.00 5.28
2758 4665 7.077605 CGCATCAAGACAATTTTAACTCTTCA 58.922 34.615 0.00 0.00 0.00 3.02
2801 4708 7.519347 ACTTAGTATTATTGTTCCCTTCCCA 57.481 36.000 0.00 0.00 0.00 4.37
2932 4844 7.110810 GCTCAAAAGGACCCTTATAGTAGTTT 58.889 38.462 1.15 0.00 34.84 2.66
2945 4857 1.087501 GTCCGATGCTCAAAAGGACC 58.912 55.000 1.76 0.00 43.99 4.46
2961 4873 4.280677 TCCATGTGACAAAATTGAAGGTCC 59.719 41.667 0.00 0.00 0.00 4.46
3012 4925 7.149569 TGTCAAAATAGCATTTTCAGAGAGG 57.850 36.000 4.52 0.00 0.00 3.69
3087 5010 0.179089 CATCGAGTCCTGGAGCCTTG 60.179 60.000 0.00 0.00 0.00 3.61
3090 5013 1.040339 ACTCATCGAGTCCTGGAGCC 61.040 60.000 0.00 0.00 38.71 4.70
3102 5025 7.710907 TGATAAAATTCAGTAGGGAACTCATCG 59.289 37.037 0.00 0.00 43.67 3.84
3161 5084 5.364778 TGAAAATATCCTCGTACATGGGTG 58.635 41.667 0.00 0.00 0.00 4.61
3170 5093 6.049149 ACATCATCGTTGAAAATATCCTCGT 58.951 36.000 0.00 0.00 34.96 4.18
3171 5094 6.530913 ACATCATCGTTGAAAATATCCTCG 57.469 37.500 0.00 0.00 34.96 4.63
3198 5121 3.227614 ACCAAAGTTAAGGCGGAACAAT 58.772 40.909 7.21 0.00 0.00 2.71
3213 5136 5.354234 AGGAAGCAACGTGATTATACCAAAG 59.646 40.000 0.00 0.00 0.00 2.77
3219 5142 6.984474 CCTTCTTAGGAAGCAACGTGATTATA 59.016 38.462 9.04 0.00 45.05 0.98
3243 5166 2.611292 CTGAGTCCGAAATGCATCTTCC 59.389 50.000 0.00 0.00 0.00 3.46
3249 5172 2.254546 ACAACTGAGTCCGAAATGCA 57.745 45.000 0.00 0.00 0.00 3.96
3252 5175 4.336889 TCTGAACAACTGAGTCCGAAAT 57.663 40.909 0.00 0.00 0.00 2.17
3253 5176 3.812156 TCTGAACAACTGAGTCCGAAA 57.188 42.857 0.00 0.00 0.00 3.46
3260 5183 9.282247 GCAAACATATAATTCTGAACAACTGAG 57.718 33.333 0.00 0.00 0.00 3.35
3261 5184 9.013229 AGCAAACATATAATTCTGAACAACTGA 57.987 29.630 0.00 0.00 0.00 3.41
3262 5185 9.069078 CAGCAAACATATAATTCTGAACAACTG 57.931 33.333 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.