Multiple sequence alignment - TraesCS2B01G199000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G199000 chr2B 100.000 4869 0 0 1 4869 176709590 176704722 0.000000e+00 8992
1 TraesCS2B01G199000 chr2D 95.152 4476 145 35 413 4869 124065052 124060630 0.000000e+00 6998
2 TraesCS2B01G199000 chr2A 95.003 4423 120 46 493 4869 129867906 129872273 0.000000e+00 6850
3 TraesCS2B01G199000 chr4B 94.470 217 12 0 1 217 670859779 670859995 7.810000e-88 335
4 TraesCS2B01G199000 chr1D 92.793 222 13 3 1 221 451074283 451074064 7.860000e-83 318
5 TraesCS2B01G199000 chr6B 92.627 217 16 0 1 217 67460605 67460821 3.660000e-81 313
6 TraesCS2B01G199000 chr4A 92.627 217 15 1 1 217 705584826 705585041 1.320000e-80 311
7 TraesCS2B01G199000 chrUn 92.166 217 17 0 1 217 31687518 31687734 1.700000e-79 307
8 TraesCS2B01G199000 chrUn 91.364 220 17 1 1 220 82255953 82255736 2.850000e-77 300
9 TraesCS2B01G199000 chrUn 91.705 217 16 1 1 217 395978662 395978876 2.850000e-77 300
10 TraesCS2B01G199000 chr3D 92.166 217 17 0 1 217 489643415 489643199 1.700000e-79 307
11 TraesCS2B01G199000 chr6A 91.855 221 15 2 1 221 564257698 564257915 6.120000e-79 305


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G199000 chr2B 176704722 176709590 4868 True 8992 8992 100.000 1 4869 1 chr2B.!!$R1 4868
1 TraesCS2B01G199000 chr2D 124060630 124065052 4422 True 6998 6998 95.152 413 4869 1 chr2D.!!$R1 4456
2 TraesCS2B01G199000 chr2A 129867906 129872273 4367 False 6850 6850 95.003 493 4869 1 chr2A.!!$F1 4376

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 268 0.031817 CAAATGGGCCAGGGAAGGAT 60.032 55.000 13.78 0.0 0.00 3.24 F
385 386 0.179015 TTTACCTGTTTGCTCCCGCA 60.179 50.000 0.00 0.0 46.24 5.69 F
581 584 0.249120 CAATCAGACGGCCTGTACCA 59.751 55.000 0.00 0.0 43.38 3.25 F
1256 1259 1.103398 TGGAGCATCTCTCGATCGCA 61.103 55.000 11.09 0.0 42.82 5.10 F
2495 2508 1.134431 GGGCAATGCATAGTTTTGGGG 60.134 52.381 7.79 0.0 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 1727 0.475632 TCACCCCATTCACCTCCACT 60.476 55.000 0.0 0.0 0.0 4.00 R
1934 1940 3.411454 TCTTCATCACCCTCCTCATCT 57.589 47.619 0.0 0.0 0.0 2.90 R
2481 2494 1.356059 TGGTAGCCCCAAAACTATGCA 59.644 47.619 0.0 0.0 41.5 3.96 R
2704 2717 1.272147 ACTCCTGGTCATTTTGAGGGC 60.272 52.381 0.0 0.0 0.0 5.19 R
4035 4053 0.178981 AACCTGACAATGTGCAGCCT 60.179 50.000 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.249844 ATCTATGTTTTACGGGCCGG 57.750 50.000 31.78 12.53 0.00 6.13
22 23 1.193323 TCTATGTTTTACGGGCCGGA 58.807 50.000 31.78 21.84 0.00 5.14
23 24 1.554160 TCTATGTTTTACGGGCCGGAA 59.446 47.619 31.78 27.29 0.00 4.30
24 25 1.937899 CTATGTTTTACGGGCCGGAAG 59.062 52.381 31.78 11.28 28.94 3.46
37 38 4.087892 GGAAGGAGCTGCGCCAGA 62.088 66.667 24.28 0.00 32.44 3.86
38 39 2.188994 GAAGGAGCTGCGCCAGAT 59.811 61.111 24.28 9.96 32.44 2.90
39 40 1.886777 GAAGGAGCTGCGCCAGATC 60.887 63.158 24.28 14.74 44.92 2.75
42 43 2.498248 GAGCTGCGCCAGATCAGA 59.502 61.111 16.58 0.00 44.99 3.27
43 44 1.153489 GAGCTGCGCCAGATCAGAA 60.153 57.895 16.58 0.00 44.99 3.02
44 45 1.427592 GAGCTGCGCCAGATCAGAAC 61.428 60.000 16.58 0.00 44.99 3.01
45 46 2.467826 GCTGCGCCAGATCAGAACC 61.468 63.158 4.18 0.00 32.44 3.62
46 47 1.817099 CTGCGCCAGATCAGAACCC 60.817 63.158 4.18 0.00 32.44 4.11
47 48 2.892425 GCGCCAGATCAGAACCCG 60.892 66.667 0.00 0.00 0.00 5.28
48 49 2.892425 CGCCAGATCAGAACCCGC 60.892 66.667 0.00 0.00 0.00 6.13
49 50 2.268920 GCCAGATCAGAACCCGCA 59.731 61.111 0.00 0.00 0.00 5.69
50 51 1.817099 GCCAGATCAGAACCCGCAG 60.817 63.158 0.00 0.00 0.00 5.18
51 52 1.900351 CCAGATCAGAACCCGCAGA 59.100 57.895 0.00 0.00 0.00 4.26
52 53 0.250234 CCAGATCAGAACCCGCAGAA 59.750 55.000 0.00 0.00 0.00 3.02
53 54 1.649664 CAGATCAGAACCCGCAGAAG 58.350 55.000 0.00 0.00 0.00 2.85
54 55 0.107945 AGATCAGAACCCGCAGAAGC 60.108 55.000 0.00 0.00 37.42 3.86
55 56 1.078143 ATCAGAACCCGCAGAAGCC 60.078 57.895 0.00 0.00 37.52 4.35
56 57 2.859273 ATCAGAACCCGCAGAAGCCG 62.859 60.000 0.00 0.00 37.52 5.52
57 58 3.311110 AGAACCCGCAGAAGCCGA 61.311 61.111 0.00 0.00 37.52 5.54
58 59 3.119096 GAACCCGCAGAAGCCGAC 61.119 66.667 0.00 0.00 37.52 4.79
59 60 4.699522 AACCCGCAGAAGCCGACC 62.700 66.667 0.00 0.00 37.52 4.79
63 64 4.124351 CGCAGAAGCCGACCCGTA 62.124 66.667 0.00 0.00 37.52 4.02
64 65 2.263540 GCAGAAGCCGACCCGTAA 59.736 61.111 0.00 0.00 33.58 3.18
65 66 1.375013 GCAGAAGCCGACCCGTAAA 60.375 57.895 0.00 0.00 33.58 2.01
66 67 0.952010 GCAGAAGCCGACCCGTAAAA 60.952 55.000 0.00 0.00 33.58 1.52
67 68 1.515081 CAGAAGCCGACCCGTAAAAA 58.485 50.000 0.00 0.00 0.00 1.94
114 115 2.826702 GGGTCCATTACGCGGGAT 59.173 61.111 12.47 0.00 35.25 3.85
115 116 1.301479 GGGTCCATTACGCGGGATC 60.301 63.158 12.47 7.53 35.25 3.36
116 117 1.746517 GGTCCATTACGCGGGATCT 59.253 57.895 12.47 0.00 35.25 2.75
117 118 0.600255 GGTCCATTACGCGGGATCTG 60.600 60.000 12.47 0.00 35.25 2.90
118 119 1.069090 TCCATTACGCGGGATCTGC 59.931 57.895 12.47 0.00 0.00 4.26
119 120 1.227527 CCATTACGCGGGATCTGCA 60.228 57.895 12.47 0.00 0.00 4.41
120 121 0.603707 CCATTACGCGGGATCTGCAT 60.604 55.000 12.47 0.00 0.00 3.96
121 122 0.792640 CATTACGCGGGATCTGCATC 59.207 55.000 12.47 0.00 0.00 3.91
122 123 0.681733 ATTACGCGGGATCTGCATCT 59.318 50.000 12.47 0.00 0.00 2.90
123 124 0.249447 TTACGCGGGATCTGCATCTG 60.249 55.000 12.47 0.00 0.00 2.90
124 125 1.391933 TACGCGGGATCTGCATCTGT 61.392 55.000 12.47 3.62 0.00 3.41
125 126 2.242572 CGCGGGATCTGCATCTGTG 61.243 63.158 0.00 0.00 0.00 3.66
161 162 2.539020 CAAAAGCGGTTTTGCGCG 59.461 55.556 32.29 14.91 44.56 6.86
162 163 1.941734 CAAAAGCGGTTTTGCGCGA 60.942 52.632 32.29 0.00 44.56 5.87
163 164 1.226717 AAAAGCGGTTTTGCGCGAA 60.227 47.368 23.38 5.81 40.67 4.70
164 165 1.476235 AAAAGCGGTTTTGCGCGAAC 61.476 50.000 23.38 13.55 40.67 3.95
165 166 2.331019 AAAGCGGTTTTGCGCGAACT 62.331 50.000 12.10 8.96 40.67 3.01
166 167 2.982038 AAGCGGTTTTGCGCGAACTG 62.982 55.000 23.39 23.39 40.67 3.16
167 168 3.091022 CGGTTTTGCGCGAACTGC 61.091 61.111 12.10 10.64 41.47 4.40
168 169 2.025441 GGTTTTGCGCGAACTGCA 59.975 55.556 12.10 0.00 46.97 4.41
173 174 2.024022 TGCGCGAACTGCAAACAC 59.976 55.556 12.10 0.00 46.97 3.32
174 175 3.085010 GCGCGAACTGCAAACACG 61.085 61.111 12.10 0.00 46.97 4.49
175 176 2.323105 CGCGAACTGCAAACACGT 59.677 55.556 0.00 0.00 46.97 4.49
176 177 1.297304 CGCGAACTGCAAACACGTT 60.297 52.632 0.00 0.00 46.97 3.99
177 178 0.859788 CGCGAACTGCAAACACGTTT 60.860 50.000 0.00 0.00 46.97 3.60
178 179 1.264672 GCGAACTGCAAACACGTTTT 58.735 45.000 0.00 0.00 45.45 2.43
179 180 1.007524 GCGAACTGCAAACACGTTTTG 60.008 47.619 14.77 14.77 45.45 2.44
205 206 3.842923 CGAGATGCGGGGTCTGCT 61.843 66.667 0.30 0.00 36.03 4.24
206 207 2.490148 CGAGATGCGGGGTCTGCTA 61.490 63.158 0.30 0.00 36.03 3.49
207 208 1.365633 GAGATGCGGGGTCTGCTAG 59.634 63.158 0.30 0.00 0.00 3.42
208 209 1.075970 AGATGCGGGGTCTGCTAGA 60.076 57.895 0.00 0.00 0.00 2.43
209 210 1.112315 AGATGCGGGGTCTGCTAGAG 61.112 60.000 0.00 0.00 0.00 2.43
210 211 1.381872 ATGCGGGGTCTGCTAGAGT 60.382 57.895 0.00 0.00 0.00 3.24
211 212 0.978146 ATGCGGGGTCTGCTAGAGTT 60.978 55.000 0.00 0.00 0.00 3.01
212 213 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
213 214 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
214 215 1.608717 CGGGGTCTGCTAGAGTTGCT 61.609 60.000 0.00 0.00 0.00 3.91
215 216 0.176910 GGGGTCTGCTAGAGTTGCTC 59.823 60.000 0.00 0.00 0.00 4.26
216 217 1.190643 GGGTCTGCTAGAGTTGCTCT 58.809 55.000 4.02 4.02 43.83 4.09
217 218 1.134848 GGGTCTGCTAGAGTTGCTCTG 60.135 57.143 8.75 1.26 41.37 3.35
218 219 1.821753 GGTCTGCTAGAGTTGCTCTGA 59.178 52.381 8.75 0.00 41.37 3.27
219 220 2.159254 GGTCTGCTAGAGTTGCTCTGAG 60.159 54.545 8.75 0.00 41.37 3.35
220 221 2.752354 GTCTGCTAGAGTTGCTCTGAGA 59.248 50.000 9.28 5.04 41.37 3.27
221 222 3.192422 GTCTGCTAGAGTTGCTCTGAGAA 59.808 47.826 9.28 0.00 41.37 2.87
222 223 3.443329 TCTGCTAGAGTTGCTCTGAGAAG 59.557 47.826 9.28 6.60 41.37 2.85
223 224 2.495270 TGCTAGAGTTGCTCTGAGAAGG 59.505 50.000 9.28 0.00 41.37 3.46
224 225 2.757868 GCTAGAGTTGCTCTGAGAAGGA 59.242 50.000 9.28 0.00 41.37 3.36
225 226 3.194542 GCTAGAGTTGCTCTGAGAAGGAA 59.805 47.826 9.28 0.00 41.37 3.36
226 227 4.322349 GCTAGAGTTGCTCTGAGAAGGAAA 60.322 45.833 9.28 0.00 41.37 3.13
227 228 4.906747 AGAGTTGCTCTGAGAAGGAAAT 57.093 40.909 9.28 0.00 39.62 2.17
228 229 5.240013 AGAGTTGCTCTGAGAAGGAAATT 57.760 39.130 9.28 0.00 39.62 1.82
229 230 5.002516 AGAGTTGCTCTGAGAAGGAAATTG 58.997 41.667 9.28 0.00 39.62 2.32
230 231 4.978099 AGTTGCTCTGAGAAGGAAATTGA 58.022 39.130 9.28 0.00 0.00 2.57
231 232 5.002516 AGTTGCTCTGAGAAGGAAATTGAG 58.997 41.667 9.28 0.00 0.00 3.02
232 233 3.341823 TGCTCTGAGAAGGAAATTGAGC 58.658 45.455 9.28 0.00 43.73 4.26
233 234 2.351111 GCTCTGAGAAGGAAATTGAGCG 59.649 50.000 9.28 0.00 36.57 5.03
234 235 2.350522 TCTGAGAAGGAAATTGAGCGC 58.649 47.619 0.00 0.00 0.00 5.92
235 236 1.061711 CTGAGAAGGAAATTGAGCGCG 59.938 52.381 0.00 0.00 0.00 6.86
236 237 1.079503 GAGAAGGAAATTGAGCGCGT 58.920 50.000 8.43 0.00 0.00 6.01
237 238 1.061276 GAGAAGGAAATTGAGCGCGTC 59.939 52.381 8.43 4.75 0.00 5.19
238 239 0.247301 GAAGGAAATTGAGCGCGTCG 60.247 55.000 8.43 0.00 0.00 5.12
239 240 0.949105 AAGGAAATTGAGCGCGTCGT 60.949 50.000 8.43 0.00 0.00 4.34
240 241 1.225745 GGAAATTGAGCGCGTCGTG 60.226 57.895 8.43 0.25 0.00 4.35
241 242 1.491563 GAAATTGAGCGCGTCGTGT 59.508 52.632 8.43 0.00 0.00 4.49
242 243 0.516524 GAAATTGAGCGCGTCGTGTC 60.517 55.000 8.43 4.76 0.00 3.67
243 244 1.897398 AAATTGAGCGCGTCGTGTCC 61.897 55.000 8.43 0.43 0.00 4.02
249 250 4.337060 CGCGTCGTGTCCCTGACA 62.337 66.667 0.00 0.00 40.50 3.58
250 251 2.028484 GCGTCGTGTCCCTGACAA 59.972 61.111 0.00 0.00 44.49 3.18
251 252 1.593209 GCGTCGTGTCCCTGACAAA 60.593 57.895 0.00 0.00 44.49 2.83
252 253 0.949105 GCGTCGTGTCCCTGACAAAT 60.949 55.000 0.00 0.00 44.49 2.32
253 254 0.790207 CGTCGTGTCCCTGACAAATG 59.210 55.000 0.00 0.00 44.49 2.32
254 255 1.156736 GTCGTGTCCCTGACAAATGG 58.843 55.000 0.00 0.00 44.49 3.16
255 256 0.036164 TCGTGTCCCTGACAAATGGG 59.964 55.000 0.00 0.00 44.49 4.00
256 257 1.586154 CGTGTCCCTGACAAATGGGC 61.586 60.000 0.00 0.00 44.49 5.36
257 258 1.076549 TGTCCCTGACAAATGGGCC 59.923 57.895 0.00 0.00 39.78 5.80
258 259 1.076549 GTCCCTGACAAATGGGCCA 59.923 57.895 9.61 9.61 43.04 5.36
259 260 0.967380 GTCCCTGACAAATGGGCCAG 60.967 60.000 13.78 0.00 43.04 4.85
260 261 1.683365 CCCTGACAAATGGGCCAGG 60.683 63.158 13.78 5.45 44.29 4.45
261 262 1.683365 CCTGACAAATGGGCCAGGG 60.683 63.158 13.78 6.33 41.76 4.45
262 263 1.383799 CTGACAAATGGGCCAGGGA 59.616 57.895 13.78 0.00 0.00 4.20
263 264 0.251742 CTGACAAATGGGCCAGGGAA 60.252 55.000 13.78 0.00 0.00 3.97
264 265 0.251742 TGACAAATGGGCCAGGGAAG 60.252 55.000 13.78 2.38 0.00 3.46
265 266 0.972471 GACAAATGGGCCAGGGAAGG 60.972 60.000 13.78 0.40 0.00 3.46
266 267 1.387737 CAAATGGGCCAGGGAAGGA 59.612 57.895 13.78 0.00 0.00 3.36
267 268 0.031817 CAAATGGGCCAGGGAAGGAT 60.032 55.000 13.78 0.00 0.00 3.24
268 269 1.217689 CAAATGGGCCAGGGAAGGATA 59.782 52.381 13.78 0.00 0.00 2.59
269 270 1.619298 AATGGGCCAGGGAAGGATAA 58.381 50.000 13.78 0.00 0.00 1.75
270 271 1.152649 ATGGGCCAGGGAAGGATAAG 58.847 55.000 13.78 0.00 0.00 1.73
271 272 0.993509 TGGGCCAGGGAAGGATAAGG 60.994 60.000 0.00 0.00 0.00 2.69
272 273 1.720077 GGGCCAGGGAAGGATAAGGG 61.720 65.000 4.39 0.00 0.00 3.95
273 274 1.151679 GCCAGGGAAGGATAAGGGC 59.848 63.158 0.00 0.00 0.00 5.19
274 275 1.356494 GCCAGGGAAGGATAAGGGCT 61.356 60.000 0.00 0.00 37.00 5.19
275 276 1.226311 CCAGGGAAGGATAAGGGCTT 58.774 55.000 0.00 0.00 0.00 4.35
276 277 1.133668 CCAGGGAAGGATAAGGGCTTG 60.134 57.143 0.00 0.00 0.00 4.01
277 278 0.553333 AGGGAAGGATAAGGGCTTGC 59.447 55.000 0.00 0.00 0.00 4.01
278 279 0.258774 GGGAAGGATAAGGGCTTGCA 59.741 55.000 0.00 0.00 0.00 4.08
279 280 1.133356 GGGAAGGATAAGGGCTTGCAT 60.133 52.381 0.00 0.00 0.00 3.96
280 281 2.670939 GGAAGGATAAGGGCTTGCATT 58.329 47.619 0.00 0.00 0.00 3.56
281 282 3.033909 GGAAGGATAAGGGCTTGCATTT 58.966 45.455 0.00 0.00 0.00 2.32
282 283 3.452264 GGAAGGATAAGGGCTTGCATTTT 59.548 43.478 0.00 0.00 0.00 1.82
283 284 4.436332 GAAGGATAAGGGCTTGCATTTTG 58.564 43.478 0.00 0.00 0.00 2.44
284 285 2.169144 AGGATAAGGGCTTGCATTTTGC 59.831 45.455 0.00 0.00 45.29 3.68
285 286 2.554142 GATAAGGGCTTGCATTTTGCC 58.446 47.619 10.76 10.76 44.23 4.52
288 289 2.343387 GGCTTGCATTTTGCCCGT 59.657 55.556 8.71 0.00 44.23 5.28
289 290 1.737735 GGCTTGCATTTTGCCCGTC 60.738 57.895 8.71 0.00 44.23 4.79
290 291 1.737735 GCTTGCATTTTGCCCGTCC 60.738 57.895 0.00 0.00 44.23 4.79
291 292 1.444212 CTTGCATTTTGCCCGTCCG 60.444 57.895 0.00 0.00 44.23 4.79
292 293 3.565910 TTGCATTTTGCCCGTCCGC 62.566 57.895 0.00 0.00 44.23 5.54
293 294 4.049640 GCATTTTGCCCGTCCGCA 62.050 61.111 0.00 0.00 37.42 5.69
294 295 2.884367 CATTTTGCCCGTCCGCAT 59.116 55.556 0.00 0.00 38.87 4.73
295 296 1.516821 CATTTTGCCCGTCCGCATG 60.517 57.895 0.00 0.00 38.87 4.06
296 297 3.355203 ATTTTGCCCGTCCGCATGC 62.355 57.895 7.91 7.91 38.87 4.06
304 305 2.742372 GTCCGCATGCTGTCCGTT 60.742 61.111 17.13 0.00 0.00 4.44
305 306 2.031919 TCCGCATGCTGTCCGTTT 59.968 55.556 17.13 0.00 0.00 3.60
306 307 2.032634 TCCGCATGCTGTCCGTTTC 61.033 57.895 17.13 0.00 0.00 2.78
307 308 2.096406 CGCATGCTGTCCGTTTCG 59.904 61.111 17.13 0.00 0.00 3.46
308 309 2.667318 CGCATGCTGTCCGTTTCGT 61.667 57.895 17.13 0.00 0.00 3.85
309 310 1.132640 GCATGCTGTCCGTTTCGTC 59.867 57.895 11.37 0.00 0.00 4.20
310 311 1.565156 GCATGCTGTCCGTTTCGTCA 61.565 55.000 11.37 0.00 0.00 4.35
311 312 1.078709 CATGCTGTCCGTTTCGTCAT 58.921 50.000 0.00 0.00 0.00 3.06
312 313 2.267426 CATGCTGTCCGTTTCGTCATA 58.733 47.619 0.00 0.00 0.00 2.15
313 314 2.442212 TGCTGTCCGTTTCGTCATAA 57.558 45.000 0.00 0.00 0.00 1.90
314 315 2.756829 TGCTGTCCGTTTCGTCATAAA 58.243 42.857 0.00 0.00 0.00 1.40
315 316 3.331150 TGCTGTCCGTTTCGTCATAAAT 58.669 40.909 0.00 0.00 0.00 1.40
316 317 3.124466 TGCTGTCCGTTTCGTCATAAATG 59.876 43.478 0.00 0.00 0.00 2.32
317 318 3.124636 GCTGTCCGTTTCGTCATAAATGT 59.875 43.478 0.00 0.00 0.00 2.71
318 319 4.327898 GCTGTCCGTTTCGTCATAAATGTA 59.672 41.667 0.00 0.00 0.00 2.29
319 320 5.500290 GCTGTCCGTTTCGTCATAAATGTAG 60.500 44.000 0.00 0.00 0.00 2.74
320 321 4.327898 TGTCCGTTTCGTCATAAATGTAGC 59.672 41.667 0.00 0.00 0.00 3.58
321 322 3.866910 TCCGTTTCGTCATAAATGTAGCC 59.133 43.478 0.00 0.00 0.00 3.93
322 323 3.001939 CCGTTTCGTCATAAATGTAGCCC 59.998 47.826 0.00 0.00 0.00 5.19
323 324 3.619483 CGTTTCGTCATAAATGTAGCCCA 59.381 43.478 0.00 0.00 0.00 5.36
324 325 4.093703 CGTTTCGTCATAAATGTAGCCCAA 59.906 41.667 0.00 0.00 0.00 4.12
325 326 5.391097 CGTTTCGTCATAAATGTAGCCCAAA 60.391 40.000 0.00 0.00 0.00 3.28
326 327 6.560711 GTTTCGTCATAAATGTAGCCCAAAT 58.439 36.000 0.00 0.00 0.00 2.32
327 328 6.767524 TTCGTCATAAATGTAGCCCAAATT 57.232 33.333 0.00 0.00 0.00 1.82
328 329 6.767524 TCGTCATAAATGTAGCCCAAATTT 57.232 33.333 0.00 0.00 0.00 1.82
329 330 7.867305 TCGTCATAAATGTAGCCCAAATTTA 57.133 32.000 0.00 0.00 32.08 1.40
330 331 8.282455 TCGTCATAAATGTAGCCCAAATTTAA 57.718 30.769 0.00 0.00 31.50 1.52
331 332 8.740906 TCGTCATAAATGTAGCCCAAATTTAAA 58.259 29.630 0.00 0.00 31.50 1.52
332 333 9.528018 CGTCATAAATGTAGCCCAAATTTAAAT 57.472 29.630 0.00 0.00 31.50 1.40
357 358 5.446143 AAAATGCGTCAATAGGAACAACA 57.554 34.783 0.00 0.00 0.00 3.33
358 359 5.446143 AAATGCGTCAATAGGAACAACAA 57.554 34.783 0.00 0.00 0.00 2.83
359 360 5.446143 AATGCGTCAATAGGAACAACAAA 57.554 34.783 0.00 0.00 0.00 2.83
360 361 4.217754 TGCGTCAATAGGAACAACAAAC 57.782 40.909 0.00 0.00 0.00 2.93
361 362 3.223157 GCGTCAATAGGAACAACAAACG 58.777 45.455 0.00 0.00 0.00 3.60
362 363 3.805823 CGTCAATAGGAACAACAAACGG 58.194 45.455 0.00 0.00 0.00 4.44
363 364 3.495377 CGTCAATAGGAACAACAAACGGA 59.505 43.478 0.00 0.00 0.00 4.69
364 365 4.153475 CGTCAATAGGAACAACAAACGGAT 59.847 41.667 0.00 0.00 0.00 4.18
365 366 5.390613 GTCAATAGGAACAACAAACGGATG 58.609 41.667 0.00 0.00 0.00 3.51
366 367 5.048991 GTCAATAGGAACAACAAACGGATGT 60.049 40.000 0.00 0.00 34.24 3.06
367 368 5.533154 TCAATAGGAACAACAAACGGATGTT 59.467 36.000 2.63 2.63 44.08 2.71
369 370 7.228906 TCAATAGGAACAACAAACGGATGTTTA 59.771 33.333 5.47 0.00 46.33 2.01
370 371 5.177725 AGGAACAACAAACGGATGTTTAC 57.822 39.130 5.47 0.00 46.33 2.01
371 372 4.037089 AGGAACAACAAACGGATGTTTACC 59.963 41.667 5.47 8.90 46.33 2.85
372 373 4.037089 GGAACAACAAACGGATGTTTACCT 59.963 41.667 5.47 0.00 46.33 3.08
373 374 4.561735 ACAACAAACGGATGTTTACCTG 57.438 40.909 5.47 0.00 46.33 4.00
374 375 3.949113 ACAACAAACGGATGTTTACCTGT 59.051 39.130 5.47 0.00 46.33 4.00
375 376 4.399934 ACAACAAACGGATGTTTACCTGTT 59.600 37.500 5.47 0.00 46.33 3.16
376 377 5.105675 ACAACAAACGGATGTTTACCTGTTT 60.106 36.000 5.47 0.00 46.33 2.83
377 378 4.927422 ACAAACGGATGTTTACCTGTTTG 58.073 39.130 19.28 19.28 46.33 2.93
378 379 3.636282 AACGGATGTTTACCTGTTTGC 57.364 42.857 0.00 0.00 33.53 3.68
379 380 2.858745 ACGGATGTTTACCTGTTTGCT 58.141 42.857 0.00 0.00 0.00 3.91
380 381 2.812011 ACGGATGTTTACCTGTTTGCTC 59.188 45.455 0.00 0.00 0.00 4.26
381 382 2.161609 CGGATGTTTACCTGTTTGCTCC 59.838 50.000 0.00 0.00 0.00 4.70
382 383 2.492088 GGATGTTTACCTGTTTGCTCCC 59.508 50.000 0.00 0.00 0.00 4.30
383 384 1.600023 TGTTTACCTGTTTGCTCCCG 58.400 50.000 0.00 0.00 0.00 5.14
384 385 0.240145 GTTTACCTGTTTGCTCCCGC 59.760 55.000 0.00 0.00 0.00 6.13
385 386 0.179015 TTTACCTGTTTGCTCCCGCA 60.179 50.000 0.00 0.00 46.24 5.69
394 395 3.660621 GCTCCCGCATATTGAGCC 58.339 61.111 0.00 0.00 44.45 4.70
395 396 2.320587 GCTCCCGCATATTGAGCCG 61.321 63.158 0.00 0.00 44.45 5.52
396 397 2.280797 TCCCGCATATTGAGCCGC 60.281 61.111 0.00 0.00 0.00 6.53
397 398 2.591429 CCCGCATATTGAGCCGCA 60.591 61.111 0.00 0.00 0.00 5.69
398 399 2.610694 CCCGCATATTGAGCCGCAG 61.611 63.158 0.00 0.00 0.00 5.18
399 400 1.889105 CCGCATATTGAGCCGCAGT 60.889 57.895 0.00 0.00 0.00 4.40
400 401 1.439353 CCGCATATTGAGCCGCAGTT 61.439 55.000 0.00 0.00 0.00 3.16
401 402 0.378257 CGCATATTGAGCCGCAGTTT 59.622 50.000 0.00 0.00 0.00 2.66
402 403 1.202177 CGCATATTGAGCCGCAGTTTT 60.202 47.619 0.00 0.00 0.00 2.43
403 404 2.731968 CGCATATTGAGCCGCAGTTTTT 60.732 45.455 0.00 0.00 0.00 1.94
404 405 3.486708 CGCATATTGAGCCGCAGTTTTTA 60.487 43.478 0.00 0.00 0.00 1.52
405 406 4.610945 GCATATTGAGCCGCAGTTTTTAT 58.389 39.130 0.00 0.00 0.00 1.40
406 407 4.442073 GCATATTGAGCCGCAGTTTTTATG 59.558 41.667 0.00 0.00 0.00 1.90
407 408 5.581605 CATATTGAGCCGCAGTTTTTATGT 58.418 37.500 0.00 0.00 0.00 2.29
408 409 2.987413 TGAGCCGCAGTTTTTATGTG 57.013 45.000 0.00 0.00 0.00 3.21
410 411 0.887933 AGCCGCAGTTTTTATGTGGG 59.112 50.000 7.57 0.00 46.34 4.61
411 412 0.601057 GCCGCAGTTTTTATGTGGGT 59.399 50.000 7.57 0.00 46.34 4.51
425 426 7.419711 TTTATGTGGGTTTAACCTCAAACAA 57.580 32.000 14.27 0.00 39.65 2.83
427 428 5.941555 TGTGGGTTTAACCTCAAACAAAT 57.058 34.783 14.27 0.00 39.65 2.32
443 444 4.552365 ATGCGGCCAGACCATCCG 62.552 66.667 2.24 0.00 45.46 4.18
449 450 2.186903 CCAGACCATCCGGAACCG 59.813 66.667 9.01 6.25 39.44 4.44
490 491 0.305009 TCGAAATCAAACGCGTGCAA 59.695 45.000 14.98 0.27 0.00 4.08
581 584 0.249120 CAATCAGACGGCCTGTACCA 59.751 55.000 0.00 0.00 43.38 3.25
589 592 1.614241 CGGCCTGTACCAGCTAACCT 61.614 60.000 0.00 0.00 0.00 3.50
596 599 3.933332 CTGTACCAGCTAACCTAAAGCAC 59.067 47.826 0.00 0.00 42.62 4.40
603 606 4.036262 CAGCTAACCTAAAGCACAACAACA 59.964 41.667 0.00 0.00 42.62 3.33
983 986 1.907222 CGAGGTAAACACCCCTCCCC 61.907 65.000 0.00 0.00 0.00 4.81
1069 1072 1.636769 ATTTCGGGAAGAGGAGGGGC 61.637 60.000 0.00 0.00 0.00 5.80
1256 1259 1.103398 TGGAGCATCTCTCGATCGCA 61.103 55.000 11.09 0.00 42.82 5.10
1934 1940 5.090139 GAGGATGATTTGGGAGAGGAGATA 58.910 45.833 0.00 0.00 0.00 1.98
2095 2107 1.481363 GAGTAGTGGGAGGGTTGCTAC 59.519 57.143 0.00 0.00 34.05 3.58
2269 2281 9.699410 TGATGATGAGGTATAAAACAATTTCCT 57.301 29.630 0.00 0.00 0.00 3.36
2286 2298 1.699634 TCCTGCTAGCCTTTGAAGTGT 59.300 47.619 13.29 0.00 0.00 3.55
2481 2494 2.369532 AGTTTGCTGATTTGTGGGCAAT 59.630 40.909 0.00 0.00 42.86 3.56
2482 2495 2.459060 TTGCTGATTTGTGGGCAATG 57.541 45.000 0.00 0.00 39.33 2.82
2495 2508 1.134431 GGGCAATGCATAGTTTTGGGG 60.134 52.381 7.79 0.00 0.00 4.96
2629 2642 8.600449 TTTTAACGAAATTTGCTCAAATGGAT 57.400 26.923 8.43 0.00 40.57 3.41
2669 2682 5.163478 GCTCCCAAGATATTGCTTGAACATT 60.163 40.000 5.74 0.00 46.31 2.71
2704 2717 5.868043 TTATGTGATGTGAAAGCTCTGTG 57.132 39.130 0.00 0.00 0.00 3.66
2828 2843 5.308825 AGTTCCTGATGTTGTTGACCTAAG 58.691 41.667 0.00 0.00 0.00 2.18
2840 2855 9.431887 TGTTGTTGACCTAAGACTTTACATATC 57.568 33.333 0.00 0.00 0.00 1.63
2918 2933 6.463995 TTTGGGAATAATCGAAGATTTGGG 57.536 37.500 0.34 0.00 45.12 4.12
2919 2934 5.381184 TGGGAATAATCGAAGATTTGGGA 57.619 39.130 0.34 0.00 45.12 4.37
2920 2935 5.952387 TGGGAATAATCGAAGATTTGGGAT 58.048 37.500 0.34 0.00 45.12 3.85
2921 2936 6.372931 TGGGAATAATCGAAGATTTGGGATT 58.627 36.000 0.34 0.00 45.12 3.01
2922 2937 6.838612 TGGGAATAATCGAAGATTTGGGATTT 59.161 34.615 0.34 0.00 45.12 2.17
2923 2938 7.344352 TGGGAATAATCGAAGATTTGGGATTTT 59.656 33.333 0.34 0.00 45.12 1.82
2924 2939 7.653311 GGGAATAATCGAAGATTTGGGATTTTG 59.347 37.037 0.34 0.00 45.12 2.44
2925 2940 7.653311 GGAATAATCGAAGATTTGGGATTTTGG 59.347 37.037 0.34 0.00 45.12 3.28
2946 2961 6.239217 TGGATACATCAGTTAAGCATGTCT 57.761 37.500 0.00 0.00 46.17 3.41
3059 3074 8.976353 ACATCATGTATTTATTTGTGGGCTTAA 58.024 29.630 0.00 0.00 0.00 1.85
3147 3163 9.612066 ACAATTTTTCCTTCAAAATTAGCTTCA 57.388 25.926 0.00 0.00 42.09 3.02
3283 3300 6.765036 AGTCATGTTATGCTGTTATCTTCAGG 59.235 38.462 0.00 0.00 33.98 3.86
3343 3360 8.124823 TCTGGTTATACTGTCGATTTAGTTACG 58.875 37.037 5.46 0.00 0.00 3.18
3534 3552 2.885135 TTGCTGACCCTGATGATGTT 57.115 45.000 0.00 0.00 0.00 2.71
3555 3573 3.157881 TGATGAAGACAGAGACGAGGTT 58.842 45.455 0.00 0.00 0.00 3.50
3570 3588 3.068732 ACGAGGTTGATGATGATGACGAT 59.931 43.478 0.00 0.00 0.00 3.73
3579 3597 1.414181 GATGATGACGATGAGGGTGGT 59.586 52.381 0.00 0.00 0.00 4.16
3580 3598 0.536724 TGATGACGATGAGGGTGGTG 59.463 55.000 0.00 0.00 0.00 4.17
3608 3626 2.488820 GTCGTCCTCGCAGGGTAC 59.511 66.667 2.86 0.00 35.59 3.34
3668 3686 3.507622 AGCGACGATGAGGATGATGATAA 59.492 43.478 0.00 0.00 0.00 1.75
3677 3695 6.119240 TGAGGATGATGATAATGAAGACCC 57.881 41.667 0.00 0.00 0.00 4.46
3678 3696 5.157940 AGGATGATGATAATGAAGACCCG 57.842 43.478 0.00 0.00 0.00 5.28
3679 3697 4.840680 AGGATGATGATAATGAAGACCCGA 59.159 41.667 0.00 0.00 0.00 5.14
3737 3755 0.846870 CCCCTTCCTCACCCCTTCTT 60.847 60.000 0.00 0.00 0.00 2.52
3738 3756 0.621082 CCCTTCCTCACCCCTTCTTC 59.379 60.000 0.00 0.00 0.00 2.87
3739 3757 1.662686 CCTTCCTCACCCCTTCTTCT 58.337 55.000 0.00 0.00 0.00 2.85
4021 4039 5.951747 CCTCCATCCTTTGAAATTCCTGTTA 59.048 40.000 0.00 0.00 0.00 2.41
4024 4042 6.780031 TCCATCCTTTGAAATTCCTGTTACAA 59.220 34.615 0.00 0.00 0.00 2.41
4026 4044 8.096414 CCATCCTTTGAAATTCCTGTTACAATT 58.904 33.333 0.00 0.00 0.00 2.32
4027 4045 8.928733 CATCCTTTGAAATTCCTGTTACAATTG 58.071 33.333 3.24 3.24 0.00 2.32
4029 4047 6.147656 CCTTTGAAATTCCTGTTACAATTGCC 59.852 38.462 5.05 0.00 0.00 4.52
4030 4048 5.798125 TGAAATTCCTGTTACAATTGCCA 57.202 34.783 5.05 0.00 0.00 4.92
4031 4049 5.782047 TGAAATTCCTGTTACAATTGCCAG 58.218 37.500 5.05 9.12 0.00 4.85
4032 4050 5.304101 TGAAATTCCTGTTACAATTGCCAGT 59.696 36.000 5.05 0.00 0.00 4.00
4033 4051 6.491745 TGAAATTCCTGTTACAATTGCCAGTA 59.508 34.615 5.05 1.06 0.00 2.74
4034 4052 7.178274 TGAAATTCCTGTTACAATTGCCAGTAT 59.822 33.333 5.05 3.16 0.00 2.12
4035 4053 8.588290 AAATTCCTGTTACAATTGCCAGTATA 57.412 30.769 5.05 0.00 0.00 1.47
4036 4054 7.807977 ATTCCTGTTACAATTGCCAGTATAG 57.192 36.000 5.05 0.00 0.00 1.31
4037 4055 5.680619 TCCTGTTACAATTGCCAGTATAGG 58.319 41.667 5.05 5.02 0.00 2.57
4079 4097 0.251165 CCAAGAGAAAGCCCGGGAAA 60.251 55.000 29.31 0.00 0.00 3.13
4082 4100 0.034089 AGAGAAAGCCCGGGAAATGG 60.034 55.000 29.31 0.00 0.00 3.16
4127 4146 2.208431 CCGTTGCCTGCATTTGAAAAA 58.792 42.857 0.00 0.00 0.00 1.94
4128 4147 2.807392 CCGTTGCCTGCATTTGAAAAAT 59.193 40.909 0.00 0.00 0.00 1.82
4195 4215 1.890979 CTGATGATGACTGGCCGCC 60.891 63.158 1.04 1.04 0.00 6.13
4328 4355 7.491372 GGAGTTATTTAGCAATTTTTGGCTACC 59.509 37.037 0.00 0.00 41.95 3.18
4447 4474 0.744771 CCCTTCCGTGGCTAGCTTTC 60.745 60.000 15.72 4.59 0.00 2.62
4454 4481 3.265636 GGCTAGCTTTCGCCTCGC 61.266 66.667 15.72 0.00 42.98 5.03
4478 4505 4.023193 GGAGCCTTGATTTTTCGTTGAGAA 60.023 41.667 0.00 0.00 37.01 2.87
4479 4506 5.113502 AGCCTTGATTTTTCGTTGAGAAG 57.886 39.130 0.00 0.00 40.40 2.85
4480 4507 4.821805 AGCCTTGATTTTTCGTTGAGAAGA 59.178 37.500 0.00 0.00 40.40 2.87
4489 4516 6.613755 TTTTCGTTGAGAAGAGTAAAAGGG 57.386 37.500 0.00 0.00 40.40 3.95
4547 4584 2.202810 GGCGGAGTACAGCTGCTC 60.203 66.667 15.27 13.12 37.76 4.26
4708 4746 1.032657 CGGCTCGAGGAGGAGAGAAA 61.033 60.000 15.58 0.00 36.65 2.52
4709 4747 1.187087 GGCTCGAGGAGGAGAGAAAA 58.813 55.000 15.58 0.00 36.65 2.29
4789 4828 0.457337 GCTGCTTTCTTTGGCCGATG 60.457 55.000 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.946990 CCGGCCCGTAAAACATAGATTT 59.053 45.455 0.85 0.00 0.00 2.17
1 2 2.171027 TCCGGCCCGTAAAACATAGATT 59.829 45.455 0.85 0.00 0.00 2.40
2 3 1.764134 TCCGGCCCGTAAAACATAGAT 59.236 47.619 0.85 0.00 0.00 1.98
3 4 1.193323 TCCGGCCCGTAAAACATAGA 58.807 50.000 0.85 0.00 0.00 1.98
4 5 1.937899 CTTCCGGCCCGTAAAACATAG 59.062 52.381 0.85 0.00 0.00 2.23
5 6 1.407162 CCTTCCGGCCCGTAAAACATA 60.407 52.381 0.85 0.00 0.00 2.29
6 7 0.678684 CCTTCCGGCCCGTAAAACAT 60.679 55.000 0.85 0.00 0.00 2.71
7 8 1.302671 CCTTCCGGCCCGTAAAACA 60.303 57.895 0.85 0.00 0.00 2.83
8 9 1.003476 TCCTTCCGGCCCGTAAAAC 60.003 57.895 0.85 0.00 0.00 2.43
9 10 1.297364 CTCCTTCCGGCCCGTAAAA 59.703 57.895 0.85 0.00 0.00 1.52
10 11 2.983791 CTCCTTCCGGCCCGTAAA 59.016 61.111 0.85 0.00 0.00 2.01
11 12 3.777910 GCTCCTTCCGGCCCGTAA 61.778 66.667 0.85 0.00 0.00 3.18
12 13 4.772231 AGCTCCTTCCGGCCCGTA 62.772 66.667 0.85 0.00 0.00 4.02
28 29 1.817099 GGGTTCTGATCTGGCGCAG 60.817 63.158 10.83 4.99 0.00 5.18
29 30 2.268920 GGGTTCTGATCTGGCGCA 59.731 61.111 10.83 0.00 0.00 6.09
30 31 2.892425 CGGGTTCTGATCTGGCGC 60.892 66.667 0.00 0.00 0.00 6.53
31 32 2.892425 GCGGGTTCTGATCTGGCG 60.892 66.667 0.00 0.00 0.00 5.69
32 33 1.817099 CTGCGGGTTCTGATCTGGC 60.817 63.158 0.00 0.00 0.00 4.85
33 34 0.250234 TTCTGCGGGTTCTGATCTGG 59.750 55.000 0.00 0.00 0.00 3.86
34 35 1.649664 CTTCTGCGGGTTCTGATCTG 58.350 55.000 0.00 0.00 0.00 2.90
35 36 0.107945 GCTTCTGCGGGTTCTGATCT 60.108 55.000 0.00 0.00 0.00 2.75
36 37 1.092345 GGCTTCTGCGGGTTCTGATC 61.092 60.000 0.00 0.00 40.82 2.92
37 38 1.078143 GGCTTCTGCGGGTTCTGAT 60.078 57.895 0.00 0.00 40.82 2.90
38 39 2.347490 GGCTTCTGCGGGTTCTGA 59.653 61.111 0.00 0.00 40.82 3.27
39 40 3.121030 CGGCTTCTGCGGGTTCTG 61.121 66.667 0.00 0.00 40.82 3.02
40 41 3.311110 TCGGCTTCTGCGGGTTCT 61.311 61.111 0.00 0.00 40.82 3.01
41 42 3.119096 GTCGGCTTCTGCGGGTTC 61.119 66.667 0.00 0.00 40.82 3.62
42 43 4.699522 GGTCGGCTTCTGCGGGTT 62.700 66.667 0.00 0.00 40.82 4.11
46 47 3.636313 TTACGGGTCGGCTTCTGCG 62.636 63.158 0.00 0.00 40.82 5.18
47 48 0.952010 TTTTACGGGTCGGCTTCTGC 60.952 55.000 0.00 0.00 38.76 4.26
48 49 1.515081 TTTTTACGGGTCGGCTTCTG 58.485 50.000 0.00 0.00 0.00 3.02
90 91 1.731160 CGCGTAATGGACCCGTAAAAA 59.269 47.619 0.00 0.00 0.00 1.94
91 92 1.357907 CGCGTAATGGACCCGTAAAA 58.642 50.000 0.00 0.00 0.00 1.52
92 93 0.459934 CCGCGTAATGGACCCGTAAA 60.460 55.000 4.92 0.00 0.00 2.01
93 94 1.141449 CCGCGTAATGGACCCGTAA 59.859 57.895 4.92 0.00 0.00 3.18
94 95 2.784356 CCCGCGTAATGGACCCGTA 61.784 63.158 4.92 0.00 0.00 4.02
95 96 4.151582 CCCGCGTAATGGACCCGT 62.152 66.667 4.92 0.00 0.00 5.28
96 97 3.159858 ATCCCGCGTAATGGACCCG 62.160 63.158 4.92 0.00 32.36 5.28
97 98 1.301479 GATCCCGCGTAATGGACCC 60.301 63.158 4.92 0.00 32.36 4.46
98 99 0.600255 CAGATCCCGCGTAATGGACC 60.600 60.000 4.92 0.00 32.36 4.46
99 100 1.222115 GCAGATCCCGCGTAATGGAC 61.222 60.000 4.92 0.00 32.36 4.02
100 101 1.069090 GCAGATCCCGCGTAATGGA 59.931 57.895 4.92 4.54 34.54 3.41
101 102 0.603707 ATGCAGATCCCGCGTAATGG 60.604 55.000 4.92 0.00 0.00 3.16
102 103 0.792640 GATGCAGATCCCGCGTAATG 59.207 55.000 4.92 0.00 0.00 1.90
103 104 0.681733 AGATGCAGATCCCGCGTAAT 59.318 50.000 4.92 0.00 0.00 1.89
104 105 0.249447 CAGATGCAGATCCCGCGTAA 60.249 55.000 4.92 0.00 0.00 3.18
105 106 1.363807 CAGATGCAGATCCCGCGTA 59.636 57.895 4.92 0.00 0.00 4.42
106 107 2.107750 CAGATGCAGATCCCGCGT 59.892 61.111 4.92 0.00 0.00 6.01
107 108 2.107750 ACAGATGCAGATCCCGCG 59.892 61.111 0.00 0.00 0.00 6.46
108 109 3.728474 CACAGATGCAGATCCCGC 58.272 61.111 0.00 0.00 0.00 6.13
150 151 3.091022 GCAGTTCGCGCAAAACCG 61.091 61.111 16.51 9.59 0.00 4.44
151 152 1.587613 TTGCAGTTCGCGCAAAACC 60.588 52.632 16.51 5.74 45.91 3.27
152 153 3.990141 TTGCAGTTCGCGCAAAAC 58.010 50.000 8.75 11.52 45.91 2.43
156 157 2.024022 GTGTTTGCAGTTCGCGCA 59.976 55.556 8.75 0.00 46.97 6.09
157 158 3.085010 CGTGTTTGCAGTTCGCGC 61.085 61.111 0.00 0.00 46.97 6.86
158 159 0.859788 AAACGTGTTTGCAGTTCGCG 60.860 50.000 0.00 0.00 46.97 5.87
159 160 1.007524 CAAAACGTGTTTGCAGTTCGC 60.008 47.619 0.00 0.00 42.89 4.70
160 161 2.949965 CAAAACGTGTTTGCAGTTCG 57.050 45.000 0.00 0.00 32.36 3.95
167 168 2.234335 GGCCCGCAAAACGTGTTTG 61.234 57.895 14.77 14.77 41.42 2.93
168 169 2.105328 GGCCCGCAAAACGTGTTT 59.895 55.556 0.00 0.00 41.42 2.83
169 170 4.258932 CGGCCCGCAAAACGTGTT 62.259 61.111 0.00 0.00 41.42 3.32
186 187 4.899239 CAGACCCCGCATCTCGCC 62.899 72.222 0.00 0.00 37.30 5.54
188 189 2.413437 CTAGCAGACCCCGCATCTCG 62.413 65.000 0.00 0.00 38.08 4.04
189 190 1.109920 TCTAGCAGACCCCGCATCTC 61.110 60.000 0.00 0.00 0.00 2.75
190 191 1.075970 TCTAGCAGACCCCGCATCT 60.076 57.895 0.00 0.00 0.00 2.90
191 192 1.365633 CTCTAGCAGACCCCGCATC 59.634 63.158 0.00 0.00 0.00 3.91
192 193 0.978146 AACTCTAGCAGACCCCGCAT 60.978 55.000 0.00 0.00 0.00 4.73
193 194 1.609501 AACTCTAGCAGACCCCGCA 60.610 57.895 0.00 0.00 0.00 5.69
194 195 1.153549 CAACTCTAGCAGACCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
195 196 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
196 197 0.176910 GAGCAACTCTAGCAGACCCC 59.823 60.000 0.00 0.00 0.00 4.95
197 198 1.134848 CAGAGCAACTCTAGCAGACCC 60.135 57.143 0.00 0.00 38.99 4.46
198 199 1.821753 TCAGAGCAACTCTAGCAGACC 59.178 52.381 0.00 0.00 38.99 3.85
199 200 2.752354 TCTCAGAGCAACTCTAGCAGAC 59.248 50.000 0.00 0.00 38.99 3.51
200 201 3.078891 TCTCAGAGCAACTCTAGCAGA 57.921 47.619 0.00 0.00 38.99 4.26
201 202 3.429272 CCTTCTCAGAGCAACTCTAGCAG 60.429 52.174 0.00 0.00 38.99 4.24
202 203 2.495270 CCTTCTCAGAGCAACTCTAGCA 59.505 50.000 0.00 0.00 38.99 3.49
203 204 2.757868 TCCTTCTCAGAGCAACTCTAGC 59.242 50.000 0.00 0.00 38.99 3.42
204 205 5.398603 TTTCCTTCTCAGAGCAACTCTAG 57.601 43.478 0.00 0.00 38.99 2.43
205 206 6.014242 TCAATTTCCTTCTCAGAGCAACTCTA 60.014 38.462 0.00 0.00 38.99 2.43
206 207 4.906747 ATTTCCTTCTCAGAGCAACTCT 57.093 40.909 0.00 0.00 42.11 3.24
207 208 4.999950 TCAATTTCCTTCTCAGAGCAACTC 59.000 41.667 0.00 0.00 0.00 3.01
208 209 4.978099 TCAATTTCCTTCTCAGAGCAACT 58.022 39.130 0.00 0.00 0.00 3.16
209 210 4.379290 GCTCAATTTCCTTCTCAGAGCAAC 60.379 45.833 0.00 0.00 44.60 4.17
210 211 3.755378 GCTCAATTTCCTTCTCAGAGCAA 59.245 43.478 0.00 0.00 44.60 3.91
211 212 3.341823 GCTCAATTTCCTTCTCAGAGCA 58.658 45.455 0.00 0.00 44.60 4.26
212 213 2.351111 CGCTCAATTTCCTTCTCAGAGC 59.649 50.000 0.00 0.00 42.50 4.09
213 214 2.351111 GCGCTCAATTTCCTTCTCAGAG 59.649 50.000 0.00 0.00 0.00 3.35
214 215 2.350522 GCGCTCAATTTCCTTCTCAGA 58.649 47.619 0.00 0.00 0.00 3.27
215 216 1.061711 CGCGCTCAATTTCCTTCTCAG 59.938 52.381 5.56 0.00 0.00 3.35
216 217 1.078709 CGCGCTCAATTTCCTTCTCA 58.921 50.000 5.56 0.00 0.00 3.27
217 218 1.061276 GACGCGCTCAATTTCCTTCTC 59.939 52.381 5.73 0.00 0.00 2.87
218 219 1.079503 GACGCGCTCAATTTCCTTCT 58.920 50.000 5.73 0.00 0.00 2.85
219 220 0.247301 CGACGCGCTCAATTTCCTTC 60.247 55.000 5.73 0.00 0.00 3.46
220 221 0.949105 ACGACGCGCTCAATTTCCTT 60.949 50.000 5.73 0.00 0.00 3.36
221 222 1.374252 ACGACGCGCTCAATTTCCT 60.374 52.632 5.73 0.00 0.00 3.36
222 223 1.225745 CACGACGCGCTCAATTTCC 60.226 57.895 5.73 0.00 0.00 3.13
223 224 0.516524 GACACGACGCGCTCAATTTC 60.517 55.000 5.73 0.00 0.00 2.17
224 225 1.491563 GACACGACGCGCTCAATTT 59.508 52.632 5.73 0.00 0.00 1.82
225 226 2.380410 GGACACGACGCGCTCAATT 61.380 57.895 5.73 0.00 0.00 2.32
226 227 2.809601 GGACACGACGCGCTCAAT 60.810 61.111 5.73 0.00 0.00 2.57
232 233 3.834447 TTGTCAGGGACACGACGCG 62.834 63.158 3.53 3.53 42.60 6.01
233 234 0.949105 ATTTGTCAGGGACACGACGC 60.949 55.000 0.00 0.00 42.60 5.19
234 235 0.790207 CATTTGTCAGGGACACGACG 59.210 55.000 0.00 0.00 42.60 5.12
235 236 1.156736 CCATTTGTCAGGGACACGAC 58.843 55.000 0.00 0.00 42.60 4.34
236 237 3.623848 CCATTTGTCAGGGACACGA 57.376 52.632 0.00 0.00 42.60 4.35
243 244 1.683365 CCCTGGCCCATTTGTCAGG 60.683 63.158 0.00 4.71 44.60 3.86
244 245 0.251742 TTCCCTGGCCCATTTGTCAG 60.252 55.000 0.00 0.00 0.00 3.51
245 246 0.251742 CTTCCCTGGCCCATTTGTCA 60.252 55.000 0.00 0.00 0.00 3.58
246 247 0.972471 CCTTCCCTGGCCCATTTGTC 60.972 60.000 0.00 0.00 0.00 3.18
247 248 1.079073 CCTTCCCTGGCCCATTTGT 59.921 57.895 0.00 0.00 0.00 2.83
248 249 0.031817 ATCCTTCCCTGGCCCATTTG 60.032 55.000 0.00 0.00 0.00 2.32
249 250 1.619298 TATCCTTCCCTGGCCCATTT 58.381 50.000 0.00 0.00 0.00 2.32
250 251 1.500736 CTTATCCTTCCCTGGCCCATT 59.499 52.381 0.00 0.00 0.00 3.16
251 252 1.152649 CTTATCCTTCCCTGGCCCAT 58.847 55.000 0.00 0.00 0.00 4.00
252 253 0.993509 CCTTATCCTTCCCTGGCCCA 60.994 60.000 0.00 0.00 0.00 5.36
253 254 1.720077 CCCTTATCCTTCCCTGGCCC 61.720 65.000 0.00 0.00 0.00 5.80
254 255 1.846973 CCCTTATCCTTCCCTGGCC 59.153 63.158 0.00 0.00 0.00 5.36
255 256 1.151679 GCCCTTATCCTTCCCTGGC 59.848 63.158 0.00 0.00 0.00 4.85
256 257 1.133668 CAAGCCCTTATCCTTCCCTGG 60.134 57.143 0.00 0.00 0.00 4.45
257 258 1.752084 GCAAGCCCTTATCCTTCCCTG 60.752 57.143 0.00 0.00 0.00 4.45
258 259 0.553333 GCAAGCCCTTATCCTTCCCT 59.447 55.000 0.00 0.00 0.00 4.20
259 260 0.258774 TGCAAGCCCTTATCCTTCCC 59.741 55.000 0.00 0.00 0.00 3.97
260 261 2.371658 ATGCAAGCCCTTATCCTTCC 57.628 50.000 0.00 0.00 0.00 3.46
261 262 4.436332 CAAAATGCAAGCCCTTATCCTTC 58.564 43.478 0.00 0.00 0.00 3.46
262 263 3.369787 GCAAAATGCAAGCCCTTATCCTT 60.370 43.478 0.00 0.00 44.26 3.36
263 264 2.169144 GCAAAATGCAAGCCCTTATCCT 59.831 45.455 0.00 0.00 44.26 3.24
264 265 2.554142 GCAAAATGCAAGCCCTTATCC 58.446 47.619 0.00 0.00 44.26 2.59
276 277 4.049640 TGCGGACGGGCAAAATGC 62.050 61.111 0.00 0.00 44.08 3.56
291 292 1.132640 GACGAAACGGACAGCATGC 59.867 57.895 10.51 10.51 42.53 4.06
292 293 1.078709 ATGACGAAACGGACAGCATG 58.921 50.000 0.00 0.00 46.00 4.06
293 294 2.665649 TATGACGAAACGGACAGCAT 57.334 45.000 0.00 0.00 0.00 3.79
294 295 2.442212 TTATGACGAAACGGACAGCA 57.558 45.000 0.00 0.00 0.00 4.41
295 296 3.124636 ACATTTATGACGAAACGGACAGC 59.875 43.478 0.00 0.00 0.00 4.40
296 297 4.921470 ACATTTATGACGAAACGGACAG 57.079 40.909 0.00 0.00 0.00 3.51
297 298 4.327898 GCTACATTTATGACGAAACGGACA 59.672 41.667 0.00 0.00 0.00 4.02
298 299 4.260091 GGCTACATTTATGACGAAACGGAC 60.260 45.833 0.00 0.00 0.00 4.79
299 300 3.866910 GGCTACATTTATGACGAAACGGA 59.133 43.478 0.00 0.00 0.00 4.69
300 301 3.001939 GGGCTACATTTATGACGAAACGG 59.998 47.826 0.00 0.00 0.00 4.44
301 302 3.619483 TGGGCTACATTTATGACGAAACG 59.381 43.478 0.00 0.00 0.00 3.60
302 303 5.554822 TTGGGCTACATTTATGACGAAAC 57.445 39.130 0.00 0.00 0.00 2.78
303 304 6.767524 ATTTGGGCTACATTTATGACGAAA 57.232 33.333 0.00 0.00 0.00 3.46
304 305 6.767524 AATTTGGGCTACATTTATGACGAA 57.232 33.333 0.00 0.00 0.00 3.85
305 306 6.767524 AAATTTGGGCTACATTTATGACGA 57.232 33.333 0.00 0.00 0.00 4.20
306 307 8.918961 TTTAAATTTGGGCTACATTTATGACG 57.081 30.769 0.00 0.00 0.00 4.35
334 335 5.837437 TGTTGTTCCTATTGACGCATTTTT 58.163 33.333 0.00 0.00 0.00 1.94
335 336 5.446143 TGTTGTTCCTATTGACGCATTTT 57.554 34.783 0.00 0.00 0.00 1.82
336 337 5.446143 TTGTTGTTCCTATTGACGCATTT 57.554 34.783 0.00 0.00 0.00 2.32
337 338 5.219633 GTTTGTTGTTCCTATTGACGCATT 58.780 37.500 0.00 0.00 0.00 3.56
338 339 4.612712 CGTTTGTTGTTCCTATTGACGCAT 60.613 41.667 0.00 0.00 0.00 4.73
339 340 3.303461 CGTTTGTTGTTCCTATTGACGCA 60.303 43.478 0.00 0.00 0.00 5.24
340 341 3.223157 CGTTTGTTGTTCCTATTGACGC 58.777 45.455 0.00 0.00 0.00 5.19
341 342 3.495377 TCCGTTTGTTGTTCCTATTGACG 59.505 43.478 0.00 0.00 0.00 4.35
342 343 5.048991 ACATCCGTTTGTTGTTCCTATTGAC 60.049 40.000 0.00 0.00 0.00 3.18
343 344 5.067273 ACATCCGTTTGTTGTTCCTATTGA 58.933 37.500 0.00 0.00 0.00 2.57
344 345 5.371115 ACATCCGTTTGTTGTTCCTATTG 57.629 39.130 0.00 0.00 0.00 1.90
345 346 6.399639 AAACATCCGTTTGTTGTTCCTATT 57.600 33.333 1.49 0.00 43.75 1.73
346 347 6.072342 GGTAAACATCCGTTTGTTGTTCCTAT 60.072 38.462 0.95 0.00 45.01 2.57
347 348 5.239087 GGTAAACATCCGTTTGTTGTTCCTA 59.761 40.000 0.95 0.00 45.01 2.94
348 349 4.037089 GGTAAACATCCGTTTGTTGTTCCT 59.963 41.667 0.95 0.00 45.01 3.36
349 350 4.037089 AGGTAAACATCCGTTTGTTGTTCC 59.963 41.667 0.95 5.09 45.01 3.62
350 351 4.973663 CAGGTAAACATCCGTTTGTTGTTC 59.026 41.667 0.95 0.00 45.01 3.18
351 352 4.399934 ACAGGTAAACATCCGTTTGTTGTT 59.600 37.500 0.95 0.00 45.01 2.83
352 353 3.949113 ACAGGTAAACATCCGTTTGTTGT 59.051 39.130 0.95 0.94 45.01 3.32
353 354 4.561735 ACAGGTAAACATCCGTTTGTTG 57.438 40.909 0.95 0.42 45.01 3.33
354 355 5.344884 CAAACAGGTAAACATCCGTTTGTT 58.655 37.500 16.17 0.00 45.01 2.83
355 356 4.735283 GCAAACAGGTAAACATCCGTTTGT 60.735 41.667 20.70 3.40 45.01 2.83
356 357 3.733727 GCAAACAGGTAAACATCCGTTTG 59.266 43.478 18.18 18.18 45.01 2.93
357 358 3.634910 AGCAAACAGGTAAACATCCGTTT 59.365 39.130 0.00 0.00 46.94 3.60
358 359 3.219281 AGCAAACAGGTAAACATCCGTT 58.781 40.909 0.00 0.00 36.73 4.44
359 360 2.812011 GAGCAAACAGGTAAACATCCGT 59.188 45.455 0.00 0.00 0.00 4.69
360 361 2.161609 GGAGCAAACAGGTAAACATCCG 59.838 50.000 0.00 0.00 0.00 4.18
361 362 2.492088 GGGAGCAAACAGGTAAACATCC 59.508 50.000 0.00 0.00 0.00 3.51
362 363 2.161609 CGGGAGCAAACAGGTAAACATC 59.838 50.000 0.00 0.00 0.00 3.06
363 364 2.159382 CGGGAGCAAACAGGTAAACAT 58.841 47.619 0.00 0.00 0.00 2.71
364 365 1.600023 CGGGAGCAAACAGGTAAACA 58.400 50.000 0.00 0.00 0.00 2.83
378 379 2.320587 GCGGCTCAATATGCGGGAG 61.321 63.158 0.00 0.00 0.00 4.30
379 380 2.280797 GCGGCTCAATATGCGGGA 60.281 61.111 0.00 0.00 0.00 5.14
380 381 2.591429 TGCGGCTCAATATGCGGG 60.591 61.111 0.00 0.00 0.00 6.13
381 382 1.439353 AACTGCGGCTCAATATGCGG 61.439 55.000 0.00 0.00 39.58 5.69
382 383 0.378257 AAACTGCGGCTCAATATGCG 59.622 50.000 0.00 0.00 0.00 4.73
383 384 2.566952 AAAACTGCGGCTCAATATGC 57.433 45.000 0.00 0.00 0.00 3.14
384 385 5.456497 CACATAAAAACTGCGGCTCAATATG 59.544 40.000 0.00 5.70 0.00 1.78
385 386 5.450412 CCACATAAAAACTGCGGCTCAATAT 60.450 40.000 0.00 0.00 0.00 1.28
386 387 4.142491 CCACATAAAAACTGCGGCTCAATA 60.142 41.667 0.00 0.00 0.00 1.90
387 388 3.367292 CCACATAAAAACTGCGGCTCAAT 60.367 43.478 0.00 0.00 0.00 2.57
388 389 2.030363 CCACATAAAAACTGCGGCTCAA 60.030 45.455 0.00 0.00 0.00 3.02
389 390 1.539388 CCACATAAAAACTGCGGCTCA 59.461 47.619 0.00 0.00 0.00 4.26
390 391 1.135402 CCCACATAAAAACTGCGGCTC 60.135 52.381 0.00 0.00 0.00 4.70
391 392 0.887933 CCCACATAAAAACTGCGGCT 59.112 50.000 0.00 0.00 0.00 5.52
392 393 0.601057 ACCCACATAAAAACTGCGGC 59.399 50.000 0.00 0.00 0.00 6.53
393 394 3.378911 AAACCCACATAAAAACTGCGG 57.621 42.857 0.00 0.00 0.00 5.69
394 395 4.682401 GGTTAAACCCACATAAAAACTGCG 59.318 41.667 0.00 0.00 30.04 5.18
395 396 5.849510 AGGTTAAACCCACATAAAAACTGC 58.150 37.500 0.00 0.00 39.75 4.40
396 397 7.045126 TGAGGTTAAACCCACATAAAAACTG 57.955 36.000 0.00 0.00 39.75 3.16
397 398 7.663043 TTGAGGTTAAACCCACATAAAAACT 57.337 32.000 0.00 0.00 39.75 2.66
398 399 7.764901 TGTTTGAGGTTAAACCCACATAAAAAC 59.235 33.333 0.00 0.00 39.75 2.43
399 400 7.848128 TGTTTGAGGTTAAACCCACATAAAAA 58.152 30.769 0.00 0.00 39.75 1.94
400 401 7.419711 TGTTTGAGGTTAAACCCACATAAAA 57.580 32.000 0.00 0.00 39.75 1.52
401 402 7.419711 TTGTTTGAGGTTAAACCCACATAAA 57.580 32.000 0.00 0.00 39.75 1.40
402 403 7.419711 TTTGTTTGAGGTTAAACCCACATAA 57.580 32.000 0.00 0.00 39.75 1.90
403 404 7.437748 CATTTGTTTGAGGTTAAACCCACATA 58.562 34.615 0.00 0.00 39.75 2.29
404 405 5.941555 TTTGTTTGAGGTTAAACCCACAT 57.058 34.783 0.00 0.00 39.75 3.21
405 406 5.665459 CATTTGTTTGAGGTTAAACCCACA 58.335 37.500 0.00 0.00 39.75 4.17
406 407 4.509970 GCATTTGTTTGAGGTTAAACCCAC 59.490 41.667 0.00 0.00 39.75 4.61
407 408 4.698575 GCATTTGTTTGAGGTTAAACCCA 58.301 39.130 0.00 0.00 39.75 4.51
408 409 3.738791 CGCATTTGTTTGAGGTTAAACCC 59.261 43.478 0.00 0.00 39.75 4.11
409 410 3.738791 CCGCATTTGTTTGAGGTTAAACC 59.261 43.478 0.00 0.00 39.27 3.27
410 411 3.183574 GCCGCATTTGTTTGAGGTTAAAC 59.816 43.478 0.00 0.00 38.66 2.01
411 412 3.385577 GCCGCATTTGTTTGAGGTTAAA 58.614 40.909 0.00 0.00 38.66 1.52
425 426 2.124151 GGATGGTCTGGCCGCATT 60.124 61.111 0.00 0.00 41.21 3.56
443 444 1.595929 TTTGCCACGAGACGGTTCC 60.596 57.895 0.00 0.00 0.00 3.62
445 446 0.745128 TTGTTTGCCACGAGACGGTT 60.745 50.000 0.00 0.00 0.00 4.44
449 450 3.526825 GTGTTGTTTGCCACGAGAC 57.473 52.632 0.00 0.00 0.00 3.36
490 491 2.763902 GTGCCTACCCTTGCCCTT 59.236 61.111 0.00 0.00 0.00 3.95
581 584 4.036380 GTGTTGTTGTGCTTTAGGTTAGCT 59.964 41.667 0.00 0.00 39.38 3.32
589 592 4.517453 GTCTATGGGTGTTGTTGTGCTTTA 59.483 41.667 0.00 0.00 0.00 1.85
596 599 4.023193 GGTTGAAGTCTATGGGTGTTGTTG 60.023 45.833 0.00 0.00 0.00 3.33
603 606 0.909623 CGGGGTTGAAGTCTATGGGT 59.090 55.000 0.00 0.00 0.00 4.51
635 638 0.321564 TCGCTGACAGGTTGGGAATG 60.322 55.000 4.26 0.00 0.00 2.67
637 640 1.070786 GTCGCTGACAGGTTGGGAA 59.929 57.895 4.26 0.00 32.09 3.97
883 886 3.065306 CGGGGCTTATATGGGCGA 58.935 61.111 0.00 0.00 0.00 5.54
1061 1064 0.404040 CTCTATCTCTCGCCCCTCCT 59.596 60.000 0.00 0.00 0.00 3.69
1069 1072 3.920446 TCGTCCATCTCTCTATCTCTCG 58.080 50.000 0.00 0.00 0.00 4.04
1244 1247 2.824489 ACGCCTGCGATCGAGAGA 60.824 61.111 21.57 0.00 43.79 3.10
1724 1727 0.475632 TCACCCCATTCACCTCCACT 60.476 55.000 0.00 0.00 0.00 4.00
1934 1940 3.411454 TCTTCATCACCCTCCTCATCT 57.589 47.619 0.00 0.00 0.00 2.90
2269 2281 4.277423 GGTAAAACACTTCAAAGGCTAGCA 59.723 41.667 18.24 0.00 0.00 3.49
2366 2378 4.823107 ACCTGCAATATAGTAGGGTGGTA 58.177 43.478 3.25 0.00 44.63 3.25
2367 2379 3.665443 ACCTGCAATATAGTAGGGTGGT 58.335 45.455 3.25 0.00 44.63 4.16
2368 2380 7.676683 ATATACCTGCAATATAGTAGGGTGG 57.323 40.000 3.25 0.00 44.63 4.61
2481 2494 1.356059 TGGTAGCCCCAAAACTATGCA 59.644 47.619 0.00 0.00 41.50 3.96
2482 2495 2.137810 TGGTAGCCCCAAAACTATGC 57.862 50.000 0.00 0.00 41.50 3.14
2704 2717 1.272147 ACTCCTGGTCATTTTGAGGGC 60.272 52.381 0.00 0.00 0.00 5.19
2755 2768 5.255397 TCAGAATCCCCAAGCTTCTAAAA 57.745 39.130 0.00 0.00 0.00 1.52
2756 2769 4.927267 TCAGAATCCCCAAGCTTCTAAA 57.073 40.909 0.00 0.00 0.00 1.85
2840 2855 8.029642 AGACAGTCACTAATTTTAACATTCGG 57.970 34.615 2.66 0.00 0.00 4.30
2918 2933 8.408601 ACATGCTTAACTGATGTATCCAAAATC 58.591 33.333 0.00 0.00 0.00 2.17
2919 2934 8.297470 ACATGCTTAACTGATGTATCCAAAAT 57.703 30.769 0.00 0.00 0.00 1.82
2920 2935 7.611467 AGACATGCTTAACTGATGTATCCAAAA 59.389 33.333 0.00 0.00 30.39 2.44
2921 2936 7.112122 AGACATGCTTAACTGATGTATCCAAA 58.888 34.615 0.00 0.00 30.39 3.28
2922 2937 6.653020 AGACATGCTTAACTGATGTATCCAA 58.347 36.000 0.00 0.00 30.39 3.53
2923 2938 6.239217 AGACATGCTTAACTGATGTATCCA 57.761 37.500 0.00 0.00 30.39 3.41
2924 2939 7.254932 GGAAAGACATGCTTAACTGATGTATCC 60.255 40.741 0.00 0.00 35.24 2.59
2925 2940 7.254932 GGGAAAGACATGCTTAACTGATGTATC 60.255 40.741 0.00 0.00 35.24 2.24
2945 2960 4.299485 AGGTCCTAGGAACATAGGGAAAG 58.701 47.826 28.61 0.00 42.36 2.62
2946 2961 4.363546 AGGTCCTAGGAACATAGGGAAA 57.636 45.455 28.61 0.00 42.36 3.13
3059 3074 4.492494 TGCATCAGGTGATACATCTGTT 57.508 40.909 11.02 1.61 42.61 3.16
3134 3150 8.441312 AATGGCCATTATTGAAGCTAATTTTG 57.559 30.769 29.73 0.00 0.00 2.44
3326 3343 8.239314 TCAGTTAATCGTAACTAAATCGACAGT 58.761 33.333 0.00 0.00 46.71 3.55
3343 3360 9.155975 TCTTCTAGCAGACAAAATCAGTTAATC 57.844 33.333 0.00 0.00 0.00 1.75
3534 3552 2.796557 ACCTCGTCTCTGTCTTCATCA 58.203 47.619 0.00 0.00 0.00 3.07
3555 3573 2.967887 ACCCTCATCGTCATCATCATCA 59.032 45.455 0.00 0.00 0.00 3.07
3570 3588 2.447572 TGGTCTGCACCACCCTCA 60.448 61.111 7.49 0.00 46.63 3.86
3579 3597 4.357947 GACGACGGCTGGTCTGCA 62.358 66.667 0.00 0.00 43.79 4.41
3608 3626 0.471617 ATCATCCCTCTTCCGCTTGG 59.528 55.000 0.00 0.00 0.00 3.61
3668 3686 2.240162 GAACGGCCTCGGGTCTTCAT 62.240 60.000 0.00 0.00 41.39 2.57
3677 3695 3.423154 GGTGCTTGAACGGCCTCG 61.423 66.667 0.00 0.00 43.02 4.63
3678 3696 2.281484 TGGTGCTTGAACGGCCTC 60.281 61.111 0.00 0.00 0.00 4.70
3679 3697 2.281761 CTGGTGCTTGAACGGCCT 60.282 61.111 0.00 0.00 0.00 5.19
3737 3755 7.182760 TCCTGATTACTTCTTTCTACCTGAGA 58.817 38.462 0.00 0.00 0.00 3.27
3738 3756 7.411486 TCCTGATTACTTCTTTCTACCTGAG 57.589 40.000 0.00 0.00 0.00 3.35
3739 3757 6.127310 GCTCCTGATTACTTCTTTCTACCTGA 60.127 42.308 0.00 0.00 0.00 3.86
3780 3798 2.397597 ACCCACCATTTCTGTTTTGCT 58.602 42.857 0.00 0.00 0.00 3.91
3781 3799 2.908688 ACCCACCATTTCTGTTTTGC 57.091 45.000 0.00 0.00 0.00 3.68
3782 3800 4.126437 GGAAACCCACCATTTCTGTTTTG 58.874 43.478 0.00 0.00 36.49 2.44
4002 4020 7.603784 GCAATTGTAACAGGAATTTCAAAGGAT 59.396 33.333 7.40 0.00 0.00 3.24
4029 4047 3.534554 TGACAATGTGCAGCCTATACTG 58.465 45.455 0.00 0.00 40.80 2.74
4030 4048 3.432749 CCTGACAATGTGCAGCCTATACT 60.433 47.826 0.00 0.00 0.00 2.12
4031 4049 2.874701 CCTGACAATGTGCAGCCTATAC 59.125 50.000 0.00 0.00 0.00 1.47
4032 4050 2.505407 ACCTGACAATGTGCAGCCTATA 59.495 45.455 0.00 0.00 0.00 1.31
4033 4051 1.283029 ACCTGACAATGTGCAGCCTAT 59.717 47.619 0.00 0.00 0.00 2.57
4034 4052 0.692476 ACCTGACAATGTGCAGCCTA 59.308 50.000 0.00 0.00 0.00 3.93
4035 4053 0.178981 AACCTGACAATGTGCAGCCT 60.179 50.000 0.00 0.00 0.00 4.58
4036 4054 0.675633 AAACCTGACAATGTGCAGCC 59.324 50.000 0.00 0.00 0.00 4.85
4037 4055 1.336240 GGAAACCTGACAATGTGCAGC 60.336 52.381 0.00 0.00 0.00 5.25
4038 4056 2.712057 GGAAACCTGACAATGTGCAG 57.288 50.000 0.00 0.00 0.00 4.41
4079 4097 1.273986 GGCATTTCAAAGGGGGCCAT 61.274 55.000 4.39 0.00 41.02 4.40
4082 4100 2.669133 GGGGCATTTCAAAGGGGGC 61.669 63.158 0.00 0.00 0.00 5.80
4127 4146 6.016555 AGTTCAACCAGGGCAAAGTATAAAT 58.983 36.000 0.00 0.00 0.00 1.40
4128 4147 5.242838 CAGTTCAACCAGGGCAAAGTATAAA 59.757 40.000 0.00 0.00 0.00 1.40
4277 4304 2.290577 GCCCATTTGCTATAGGAGGGAG 60.291 54.545 18.06 6.90 36.96 4.30
4378 4405 1.445582 CTCGTTGGTAGACCGGCAC 60.446 63.158 0.00 0.00 39.43 5.01
4454 4481 2.225491 TCAACGAAAAATCAAGGCTCCG 59.775 45.455 0.00 0.00 0.00 4.63
4457 4484 4.821805 TCTTCTCAACGAAAAATCAAGGCT 59.178 37.500 0.00 0.00 0.00 4.58
4461 4488 9.716507 CTTTTACTCTTCTCAACGAAAAATCAA 57.283 29.630 0.00 0.00 0.00 2.57
4478 4505 1.272554 CGGCCTCCCCCTTTTACTCT 61.273 60.000 0.00 0.00 0.00 3.24
4479 4506 1.223763 CGGCCTCCCCCTTTTACTC 59.776 63.158 0.00 0.00 0.00 2.59
4480 4507 2.980177 GCGGCCTCCCCCTTTTACT 61.980 63.158 0.00 0.00 0.00 2.24
4547 4584 2.543848 GCCAAAAAGAAAAGCGAAAGGG 59.456 45.455 0.00 0.00 0.00 3.95
4824 4863 2.828145 GGATGGGCCAGAGAGCTC 59.172 66.667 13.78 5.27 36.34 4.09
4825 4864 2.589610 TACGGATGGGCCAGAGAGCT 62.590 60.000 13.78 0.00 35.94 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.