Multiple sequence alignment - TraesCS2B01G198600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G198600 chr2B 100.000 7016 0 0 1 7016 176300996 176293981 0.000000e+00 12957.0
1 TraesCS2B01G198600 chr2B 90.741 54 5 0 6555 6608 176294388 176294335 9.760000e-09 73.1
2 TraesCS2B01G198600 chr2B 90.741 54 5 0 6609 6662 176294442 176294389 9.760000e-09 73.1
3 TraesCS2B01G198600 chr2D 93.867 2038 79 19 801 2815 123514896 123512882 0.000000e+00 3029.0
4 TraesCS2B01G198600 chr2D 91.701 1964 72 23 4654 6574 123509866 123507951 0.000000e+00 2639.0
5 TraesCS2B01G198600 chr2D 98.119 691 11 1 2926 3616 123512888 123512200 0.000000e+00 1203.0
6 TraesCS2B01G198600 chr2D 97.199 714 10 3 3616 4319 393585389 393584676 0.000000e+00 1199.0
7 TraesCS2B01G198600 chr2D 93.904 689 28 8 3617 4301 548513756 548514434 0.000000e+00 1027.0
8 TraesCS2B01G198600 chr2D 86.371 653 77 8 149 795 123515792 123515146 0.000000e+00 702.0
9 TraesCS2B01G198600 chr2D 94.979 239 11 1 4326 4564 123512207 123511970 2.390000e-99 374.0
10 TraesCS2B01G198600 chr2D 94.118 119 6 1 2811 2929 489410071 489410188 5.590000e-41 180.0
11 TraesCS2B01G198600 chr2D 95.699 93 3 1 4562 4654 123511530 123511439 1.580000e-31 148.0
12 TraesCS2B01G198600 chr2D 82.639 144 23 1 1 144 123516000 123515859 7.390000e-25 126.0
13 TraesCS2B01G198600 chr2A 96.435 1094 35 2 4654 5746 128509617 128508527 0.000000e+00 1801.0
14 TraesCS2B01G198600 chr2A 94.144 1127 44 10 1702 2815 128518804 128517687 0.000000e+00 1696.0
15 TraesCS2B01G198600 chr2A 90.909 1287 51 19 5777 7016 128508525 128507258 0.000000e+00 1668.0
16 TraesCS2B01G198600 chr2A 93.862 896 41 7 776 1670 128519687 128518805 0.000000e+00 1338.0
17 TraesCS2B01G198600 chr2A 97.028 572 13 2 3758 4325 51573349 51572778 0.000000e+00 959.0
18 TraesCS2B01G198600 chr2A 97.669 429 8 1 3188 3616 128511933 128511507 0.000000e+00 736.0
19 TraesCS2B01G198600 chr2A 94.578 332 14 3 4326 4654 128511514 128511184 1.750000e-140 510.0
20 TraesCS2B01G198600 chr2A 98.513 269 4 0 2926 3194 128517693 128517425 6.370000e-130 475.0
21 TraesCS2B01G198600 chr2A 85.337 416 55 4 360 775 128522571 128522162 6.500000e-115 425.0
22 TraesCS2B01G198600 chr2A 94.872 117 4 2 2812 2928 240467234 240467348 1.550000e-41 182.0
23 TraesCS2B01G198600 chr2A 91.339 127 9 2 2802 2928 75637250 75637126 9.360000e-39 172.0
24 TraesCS2B01G198600 chr2A 96.296 54 2 0 6609 6662 128507718 128507665 9.690000e-14 89.8
25 TraesCS2B01G198600 chr4D 95.924 687 14 7 3617 4301 132936971 132936297 0.000000e+00 1101.0
26 TraesCS2B01G198600 chr4A 95.507 690 19 7 3617 4301 208811741 208811059 0.000000e+00 1092.0
27 TraesCS2B01G198600 chr4A 94.286 700 25 10 3618 4312 278363235 278363924 0.000000e+00 1057.0
28 TraesCS2B01G198600 chr7A 94.661 693 20 7 3614 4301 668061717 668061037 0.000000e+00 1059.0
29 TraesCS2B01G198600 chr7D 95.841 577 20 2 3729 4301 376090841 376091417 0.000000e+00 929.0
30 TraesCS2B01G198600 chr7D 93.939 198 3 2 3620 3808 376090693 376090890 2.480000e-74 291.0
31 TraesCS2B01G198600 chr7D 90.710 183 12 4 3616 3794 576594685 576594504 9.100000e-59 239.0
32 TraesCS2B01G198600 chr7D 93.277 119 6 2 2811 2929 33478569 33478453 2.600000e-39 174.0
33 TraesCS2B01G198600 chr7D 92.683 41 1 2 4297 4337 376091402 376091440 2.730000e-04 58.4
34 TraesCS2B01G198600 chr5A 95.064 547 16 8 3602 4142 364360682 364361223 0.000000e+00 850.0
35 TraesCS2B01G198600 chr5A 94.167 120 6 1 2809 2928 490696789 490696671 1.550000e-41 182.0
36 TraesCS2B01G198600 chr5A 82.609 69 12 0 4230 4298 481207353 481207285 2.110000e-05 62.1
37 TraesCS2B01G198600 chr3D 85.414 761 75 21 5346 6094 513559702 513560438 0.000000e+00 758.0
38 TraesCS2B01G198600 chr3D 94.755 286 6 1 3617 3893 593083957 593084242 3.000000e-118 436.0
39 TraesCS2B01G198600 chr3D 91.406 128 9 2 2801 2928 13983782 13983907 2.600000e-39 174.0
40 TraesCS2B01G198600 chr6D 91.209 182 11 4 3617 3794 465212601 465212421 7.030000e-60 243.0
41 TraesCS2B01G198600 chr6D 83.951 81 13 0 42 122 386614094 386614014 2.100000e-10 78.7
42 TraesCS2B01G198600 chr5D 92.063 126 9 1 2803 2928 97831849 97831725 7.230000e-40 176.0
43 TraesCS2B01G198600 chr5D 90.541 74 7 0 39 112 127302879 127302806 1.610000e-16 99.0
44 TraesCS2B01G198600 chr7B 92.623 122 8 1 2807 2928 383714741 383714621 2.600000e-39 174.0
45 TraesCS2B01G198600 chr4B 90.909 132 9 3 2806 2937 391565604 391565476 2.600000e-39 174.0
46 TraesCS2B01G198600 chr1D 82.243 107 18 1 10 116 235167933 235168038 2.700000e-14 91.6
47 TraesCS2B01G198600 chr1D 84.000 75 9 3 44 117 200710172 200710244 1.260000e-07 69.4
48 TraesCS2B01G198600 chr3B 79.032 124 13 7 4224 4336 95162555 95162676 9.760000e-09 73.1
49 TraesCS2B01G198600 chr6A 82.500 80 12 2 44 122 531779819 531779741 1.260000e-07 69.4
50 TraesCS2B01G198600 chr3A 97.143 35 1 0 88 122 673256328 673256294 7.600000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G198600 chr2B 176293981 176300996 7015 True 12957.000000 12957 100.000000 1 7016 1 chr2B.!!$R1 7015
1 TraesCS2B01G198600 chr2D 393584676 393585389 713 True 1199.000000 1199 97.199000 3616 4319 1 chr2D.!!$R1 703
2 TraesCS2B01G198600 chr2D 123507951 123516000 8049 True 1174.428571 3029 91.910714 1 6574 7 chr2D.!!$R2 6573
3 TraesCS2B01G198600 chr2D 548513756 548514434 678 False 1027.000000 1027 93.904000 3617 4301 1 chr2D.!!$F2 684
4 TraesCS2B01G198600 chr2A 128517425 128522571 5146 True 983.500000 1696 92.964000 360 3194 4 chr2A.!!$R4 2834
5 TraesCS2B01G198600 chr2A 128507258 128511933 4675 True 960.960000 1801 95.177400 3188 7016 5 chr2A.!!$R3 3828
6 TraesCS2B01G198600 chr2A 51572778 51573349 571 True 959.000000 959 97.028000 3758 4325 1 chr2A.!!$R1 567
7 TraesCS2B01G198600 chr4D 132936297 132936971 674 True 1101.000000 1101 95.924000 3617 4301 1 chr4D.!!$R1 684
8 TraesCS2B01G198600 chr4A 208811059 208811741 682 True 1092.000000 1092 95.507000 3617 4301 1 chr4A.!!$R1 684
9 TraesCS2B01G198600 chr4A 278363235 278363924 689 False 1057.000000 1057 94.286000 3618 4312 1 chr4A.!!$F1 694
10 TraesCS2B01G198600 chr7A 668061037 668061717 680 True 1059.000000 1059 94.661000 3614 4301 1 chr7A.!!$R1 687
11 TraesCS2B01G198600 chr7D 376090693 376091440 747 False 426.133333 929 94.154333 3620 4337 3 chr7D.!!$F1 717
12 TraesCS2B01G198600 chr5A 364360682 364361223 541 False 850.000000 850 95.064000 3602 4142 1 chr5A.!!$F1 540
13 TraesCS2B01G198600 chr3D 513559702 513560438 736 False 758.000000 758 85.414000 5346 6094 1 chr3D.!!$F2 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 3605 0.034337 TGTTTGAGTGGTCCGGCTAC 59.966 55.000 0.00 0.00 0.00 3.58 F
1403 4191 0.039618 GAGGGATTGGCTTTGACCCA 59.960 55.000 0.00 0.00 42.62 4.51 F
1414 4202 1.068434 CTTTGACCCAAATTGCGTGGT 59.932 47.619 0.00 0.00 32.70 4.16 F
2279 5085 0.321653 GTGTAACTGGACCAGCTGGG 60.322 60.000 35.42 20.37 44.81 4.45 F
2827 5635 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46 F
2837 5645 0.372334 CCGTCCGAAAATACTTGCCG 59.628 55.000 0.00 0.00 0.00 5.69 F
2838 5646 0.372334 CGTCCGAAAATACTTGCCGG 59.628 55.000 0.00 0.00 41.36 6.13 F
3648 6456 0.685097 TCGCCTAGCCAAGTCAAGTT 59.315 50.000 0.00 0.00 0.00 2.66 F
4284 7153 1.009389 CAACCTCGCTCCAACGACTC 61.009 60.000 0.00 0.00 37.09 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 5048 0.033796 ACATCTGGGGCCAATGAGTG 60.034 55.000 16.72 0.00 0.00 3.51 R
2244 5050 0.033796 ACACATCTGGGGCCAATGAG 60.034 55.000 16.72 12.26 0.00 2.90 R
2808 5616 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73 R
3644 6452 1.675641 GTCGGAGGCATGGCAACTT 60.676 57.895 22.64 0.00 37.61 2.66 R
4666 9553 0.538287 AGGTCTGGAAGCTGGTTTGC 60.538 55.000 0.00 0.00 33.44 3.68 R
4671 9558 1.202806 TGAACAAGGTCTGGAAGCTGG 60.203 52.381 0.00 0.00 35.40 4.85 R
4778 9665 2.549754 CCACATGACTGAGTTCACAACC 59.450 50.000 0.00 0.00 0.00 3.77 R
5474 10371 1.786937 ATGGGTTGTTTGACCTGCAA 58.213 45.000 0.00 0.00 39.71 4.08 R
6132 11037 1.467920 GCTTCTTCAGGTGGAATGGG 58.532 55.000 0.00 0.00 34.32 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.169672 TTCTTCTACTTCCGCCGTCG 59.830 55.000 0.00 0.00 0.00 5.12
24 25 2.884087 CTACTTCCGCCGTCGCACAT 62.884 60.000 0.00 0.00 34.03 3.21
36 37 0.530870 TCGCACATCGTTGTTCCACA 60.531 50.000 0.00 0.00 39.67 4.17
38 39 1.069296 CGCACATCGTTGTTCCACAAT 60.069 47.619 0.00 0.00 40.59 2.71
40 41 2.921912 GCACATCGTTGTTCCACAATGG 60.922 50.000 8.60 0.00 43.42 3.16
59 60 2.095461 GGTCCAATCTGAAGGCCTTTC 58.905 52.381 21.54 13.33 36.29 2.62
62 63 1.098050 CAATCTGAAGGCCTTTCCCG 58.902 55.000 21.54 8.59 34.77 5.14
68 69 0.107800 GAAGGCCTTTCCCGGTACTC 60.108 60.000 21.54 0.00 34.51 2.59
71 72 1.551019 GGCCTTTCCCGGTACTCTGT 61.551 60.000 0.00 0.00 0.00 3.41
72 73 0.108281 GCCTTTCCCGGTACTCTGTC 60.108 60.000 0.00 0.00 0.00 3.51
74 75 1.621814 CCTTTCCCGGTACTCTGTCAA 59.378 52.381 0.00 0.00 0.00 3.18
77 78 2.297698 TCCCGGTACTCTGTCAAAGA 57.702 50.000 0.00 0.00 0.00 2.52
119 120 4.566278 CCATCTCCATCAACTTGAAGGACA 60.566 45.833 11.03 3.00 39.11 4.02
120 121 4.008074 TCTCCATCAACTTGAAGGACAC 57.992 45.455 11.03 0.00 39.11 3.67
133 134 3.449737 TGAAGGACACCTAATTCTACCGG 59.550 47.826 0.00 0.00 31.13 5.28
144 145 2.202570 CTACCGGTTCGACGCCTG 60.203 66.667 15.04 0.31 0.00 4.85
145 146 2.985282 TACCGGTTCGACGCCTGT 60.985 61.111 15.04 7.29 0.00 4.00
146 147 3.271706 TACCGGTTCGACGCCTGTG 62.272 63.158 15.04 0.66 0.00 3.66
154 217 4.083862 GACGCCTGTGTCCCCTCC 62.084 72.222 0.00 0.00 32.61 4.30
159 222 1.229658 CCTGTGTCCCCTCCTCCTT 60.230 63.158 0.00 0.00 0.00 3.36
160 223 1.268283 CCTGTGTCCCCTCCTCCTTC 61.268 65.000 0.00 0.00 0.00 3.46
185 250 1.764054 CCCCTCTTCCATCGCCTCT 60.764 63.158 0.00 0.00 0.00 3.69
187 252 1.227497 CCTCTTCCATCGCCTCTGC 60.227 63.158 0.00 0.00 0.00 4.26
188 253 1.227497 CTCTTCCATCGCCTCTGCC 60.227 63.158 0.00 0.00 0.00 4.85
189 254 1.964608 CTCTTCCATCGCCTCTGCCA 61.965 60.000 0.00 0.00 0.00 4.92
210 275 3.672295 CTCCTCCTGTTCCAGCGCC 62.672 68.421 2.29 0.00 0.00 6.53
235 302 1.892819 CTTCTCCCTGCTTCGCCTCA 61.893 60.000 0.00 0.00 0.00 3.86
238 305 2.203126 CCCTGCTTCGCCTCATCC 60.203 66.667 0.00 0.00 0.00 3.51
263 330 1.142465 AGTTCGGAGATAGGTCGGCTA 59.858 52.381 0.00 0.00 35.04 3.93
264 331 1.266446 GTTCGGAGATAGGTCGGCTAC 59.734 57.143 0.00 0.00 35.04 3.58
267 334 1.001597 CGGAGATAGGTCGGCTACAAC 60.002 57.143 0.00 0.00 0.00 3.32
271 338 1.378882 ATAGGTCGGCTACAACGCGA 61.379 55.000 15.93 0.00 0.00 5.87
275 342 3.545481 CGGCTACAACGCGAGCAG 61.545 66.667 15.93 8.38 40.64 4.24
291 358 4.406173 AGCGTGACGTGCCTCGAG 62.406 66.667 6.91 5.13 42.86 4.04
293 360 4.778415 CGTGACGTGCCTCGAGGG 62.778 72.222 32.06 18.30 42.86 4.30
362 429 3.247948 TGTAGTAGGTGACCTTGGTGA 57.752 47.619 10.53 0.00 34.61 4.02
409 476 0.751643 GTCAAAGTGGGCTGGTGTGT 60.752 55.000 0.00 0.00 0.00 3.72
416 483 2.669569 GGCTGGTGTGTGCACGAT 60.670 61.111 13.13 0.00 46.13 3.73
440 507 1.448119 CGATAGCAGCTCGGAGGTGA 61.448 60.000 34.28 18.81 45.98 4.02
442 509 0.106469 ATAGCAGCTCGGAGGTGAGA 60.106 55.000 34.28 22.77 45.98 3.27
449 516 2.443016 CGGAGGTGAGAGAGGGGG 60.443 72.222 0.00 0.00 0.00 5.40
486 553 1.966762 GGTTTACCCTCGTCGTCCA 59.033 57.895 0.00 0.00 0.00 4.02
499 566 3.056678 TCGTCGTCCAGTTTAAATAGCCA 60.057 43.478 0.00 0.00 0.00 4.75
505 572 5.048294 CGTCCAGTTTAAATAGCCAGGTTTT 60.048 40.000 0.00 0.00 0.00 2.43
514 581 1.072505 GCCAGGTTTTGTCCCTCGA 59.927 57.895 0.00 0.00 0.00 4.04
516 583 0.955919 CCAGGTTTTGTCCCTCGAGC 60.956 60.000 6.99 0.00 0.00 5.03
526 593 2.126463 CCTCGAGCGACGCTGAAA 60.126 61.111 29.85 11.08 39.88 2.69
530 597 1.729484 CGAGCGACGCTGAAACAGA 60.729 57.895 29.85 0.00 39.88 3.41
541 608 3.434641 CGCTGAAACAGAGACATGAATGT 59.565 43.478 0.00 0.00 37.41 2.71
542 609 4.627035 CGCTGAAACAGAGACATGAATGTA 59.373 41.667 0.00 0.00 35.78 2.29
557 624 2.238084 ATGTAGACTGGTGAGCTCCA 57.762 50.000 12.15 2.07 36.00 3.86
576 643 2.504367 CAGTGGAACGATGGTTTCCTT 58.496 47.619 0.00 0.00 45.86 3.36
638 705 0.179076 CATGTCTGCGCCACCTCATA 60.179 55.000 4.18 0.00 0.00 2.15
656 723 3.055891 TCATATCCGCCACACATATGAGG 60.056 47.826 10.38 9.26 35.50 3.86
669 736 3.587061 ACATATGAGGTGTGTTTGAGGGA 59.413 43.478 10.38 0.00 0.00 4.20
703 772 0.409092 ACATCAATTGAGGGGTGCCA 59.591 50.000 22.84 0.00 0.00 4.92
710 779 1.133809 TTGAGGGGTGCCAGTTAGCT 61.134 55.000 0.00 0.00 0.00 3.32
711 780 0.252513 TGAGGGGTGCCAGTTAGCTA 60.253 55.000 0.00 0.00 0.00 3.32
712 781 0.466124 GAGGGGTGCCAGTTAGCTAG 59.534 60.000 0.00 0.00 0.00 3.42
723 792 3.430929 CCAGTTAGCTAGCGAACCATTCT 60.431 47.826 29.80 13.71 33.09 2.40
726 795 4.081642 AGTTAGCTAGCGAACCATTCTGAA 60.082 41.667 29.80 0.00 33.09 3.02
796 3583 1.618837 GCTGTCCATCCGGAGCTTATA 59.381 52.381 11.34 0.00 43.99 0.98
799 3586 2.249139 GTCCATCCGGAGCTTATAGGT 58.751 52.381 11.34 0.00 43.99 3.08
818 3605 0.034337 TGTTTGAGTGGTCCGGCTAC 59.966 55.000 0.00 0.00 0.00 3.58
820 3607 0.981183 TTTGAGTGGTCCGGCTACAT 59.019 50.000 13.19 1.26 0.00 2.29
826 3613 0.689745 TGGTCCGGCTACATAGGCTT 60.690 55.000 10.40 0.00 45.70 4.35
827 3614 0.249911 GGTCCGGCTACATAGGCTTG 60.250 60.000 10.40 0.00 45.70 4.01
828 3615 0.750850 GTCCGGCTACATAGGCTTGA 59.249 55.000 10.40 4.62 45.70 3.02
829 3616 0.750850 TCCGGCTACATAGGCTTGAC 59.249 55.000 10.40 0.00 45.70 3.18
830 3617 0.597637 CCGGCTACATAGGCTTGACG 60.598 60.000 10.40 0.00 45.70 4.35
831 3618 0.102481 CGGCTACATAGGCTTGACGT 59.898 55.000 10.40 0.00 45.70 4.34
832 3619 1.571919 GGCTACATAGGCTTGACGTG 58.428 55.000 0.00 0.00 44.61 4.49
833 3620 0.931005 GCTACATAGGCTTGACGTGC 59.069 55.000 0.00 0.00 0.00 5.34
839 3626 4.504132 GGCTTGACGTGCCTAGAG 57.496 61.111 8.09 0.00 46.38 2.43
840 3627 1.811679 GGCTTGACGTGCCTAGAGC 60.812 63.158 8.09 1.28 46.38 4.09
841 3628 1.811679 GCTTGACGTGCCTAGAGCC 60.812 63.158 0.00 0.00 42.71 4.70
842 3629 1.517257 CTTGACGTGCCTAGAGCCG 60.517 63.158 0.00 2.37 42.71 5.52
935 3723 2.023771 CGCGAGTCAAAGAGCAGCA 61.024 57.895 0.00 0.00 0.00 4.41
1255 4043 1.071699 GAGGCAAGTACCAACCAGTCA 59.928 52.381 0.00 0.00 0.00 3.41
1333 4121 4.238761 TGATTCGATCGGTATCAGGAAC 57.761 45.455 21.83 4.80 31.93 3.62
1354 4142 1.549620 TGTTCGGGTTATTGGAGCGTA 59.450 47.619 0.00 0.00 0.00 4.42
1358 4146 1.306148 GGGTTATTGGAGCGTAAGGC 58.694 55.000 0.00 0.00 44.05 4.35
1383 4171 3.942115 TGGATCTCTTCGAGTCTGTACTG 59.058 47.826 0.00 0.00 35.56 2.74
1394 4182 1.134371 GTCTGTACTGGAGGGATTGGC 60.134 57.143 0.00 0.00 0.00 4.52
1403 4191 0.039618 GAGGGATTGGCTTTGACCCA 59.960 55.000 0.00 0.00 42.62 4.51
1414 4202 1.068434 CTTTGACCCAAATTGCGTGGT 59.932 47.619 0.00 0.00 32.70 4.16
1527 4315 4.180057 TGCCCGATGTTTATGATTTTTGC 58.820 39.130 0.00 0.00 0.00 3.68
1528 4316 4.081752 TGCCCGATGTTTATGATTTTTGCT 60.082 37.500 0.00 0.00 0.00 3.91
1531 4319 5.104374 CCGATGTTTATGATTTTTGCTGCT 58.896 37.500 0.00 0.00 0.00 4.24
1532 4320 6.264832 CCGATGTTTATGATTTTTGCTGCTA 58.735 36.000 0.00 0.00 0.00 3.49
1533 4321 6.751425 CCGATGTTTATGATTTTTGCTGCTAA 59.249 34.615 0.00 0.00 0.00 3.09
1534 4322 7.436080 CCGATGTTTATGATTTTTGCTGCTAAT 59.564 33.333 0.00 0.00 0.00 1.73
1535 4323 9.449550 CGATGTTTATGATTTTTGCTGCTAATA 57.550 29.630 0.00 0.00 0.00 0.98
1646 4434 4.979197 CAGTTCTCTGTAGTTCTGTGTGTC 59.021 45.833 0.00 0.00 36.97 3.67
1666 4454 2.092484 TCGATTCAGGATTGATTGGCCA 60.092 45.455 0.00 0.00 32.27 5.36
1803 4599 8.485591 GTGCTATTTATGTTCAATAGACCGTAC 58.514 37.037 4.24 0.00 36.64 3.67
1810 4606 5.647589 TGTTCAATAGACCGTACAGATGTC 58.352 41.667 0.00 0.00 0.00 3.06
1815 4611 3.784701 AGACCGTACAGATGTCATGAC 57.215 47.619 19.27 19.27 0.00 3.06
1820 4616 3.181494 CCGTACAGATGTCATGACCGTTA 60.181 47.826 22.85 4.66 0.00 3.18
1848 4644 3.583966 ACGGTAGGGTTAGATTCCACAAA 59.416 43.478 0.00 0.00 0.00 2.83
1857 4653 8.271458 AGGGTTAGATTCCACAAATTTTGTTTT 58.729 29.630 12.02 0.00 43.23 2.43
1898 4700 6.183360 ACGTATTGCTTTCTTTGTCTCTATGC 60.183 38.462 0.00 0.00 0.00 3.14
2145 4950 1.242989 ATGCAATTGCCACGTGTACA 58.757 45.000 26.94 9.67 41.18 2.90
2158 4963 5.793457 GCCACGTGTACATTCAAAATACTTC 59.207 40.000 15.65 0.00 0.00 3.01
2188 4993 4.580167 TCAACACATTTGTCTCTTCCCTTG 59.420 41.667 0.00 0.00 33.55 3.61
2193 4998 6.183360 ACACATTTGTCTCTTCCCTTGAAAAG 60.183 38.462 0.00 0.00 45.69 2.27
2220 5026 2.076863 ACGCTGCATTGAACCTACTTC 58.923 47.619 0.00 0.00 0.00 3.01
2223 5029 3.084786 GCTGCATTGAACCTACTTCCTT 58.915 45.455 0.00 0.00 0.00 3.36
2227 5033 6.121776 TGCATTGAACCTACTTCCTTCTAA 57.878 37.500 0.00 0.00 0.00 2.10
2235 5041 6.954352 ACCTACTTCCTTCTAATCACCTTT 57.046 37.500 0.00 0.00 0.00 3.11
2242 5048 6.575162 TCCTTCTAATCACCTTTGCTTTTC 57.425 37.500 0.00 0.00 0.00 2.29
2244 5050 6.016276 TCCTTCTAATCACCTTTGCTTTTCAC 60.016 38.462 0.00 0.00 0.00 3.18
2279 5085 0.321653 GTGTAACTGGACCAGCTGGG 60.322 60.000 35.42 20.37 44.81 4.45
2291 5097 0.393402 CAGCTGGGCAACTATCTGCA 60.393 55.000 5.57 0.00 44.52 4.41
2496 5304 7.182817 TCTATAACTAGGTGTTTGTGATGCT 57.817 36.000 0.00 0.00 39.89 3.79
2497 5305 7.620880 TCTATAACTAGGTGTTTGTGATGCTT 58.379 34.615 0.00 0.00 39.89 3.91
2498 5306 4.836125 AACTAGGTGTTTGTGATGCTTG 57.164 40.909 0.00 0.00 34.84 4.01
2499 5307 4.085357 ACTAGGTGTTTGTGATGCTTGA 57.915 40.909 0.00 0.00 0.00 3.02
2500 5308 4.655963 ACTAGGTGTTTGTGATGCTTGAT 58.344 39.130 0.00 0.00 0.00 2.57
2501 5309 3.928727 AGGTGTTTGTGATGCTTGATG 57.071 42.857 0.00 0.00 0.00 3.07
2585 5393 1.401552 CTCAGAGCTTCAGTCCTCTCG 59.598 57.143 0.00 0.00 36.33 4.04
2616 5424 7.994911 TCCTACATCACTGATAGCATGAAATTT 59.005 33.333 0.00 0.00 0.00 1.82
2681 5489 7.156876 TCAGTTTGTTCTCAACTTCACATTT 57.843 32.000 0.00 0.00 32.93 2.32
2749 5557 2.372172 AGGTCCGACCATTCTGTTCTTT 59.628 45.455 19.95 0.00 41.95 2.52
2795 5603 8.742777 TCCTGAATTTCTTTTTATGGACATGAG 58.257 33.333 0.00 0.00 0.00 2.90
2798 5606 9.912634 TGAATTTCTTTTTATGGACATGAGAAC 57.087 29.630 0.00 0.00 0.00 3.01
2820 5628 8.858094 AGAACTAATAAAATAGTACTCCCTCCG 58.142 37.037 0.00 0.00 35.09 4.63
2821 5629 8.544687 AACTAATAAAATAGTACTCCCTCCGT 57.455 34.615 0.00 0.00 35.09 4.69
2822 5630 8.175925 ACTAATAAAATAGTACTCCCTCCGTC 57.824 38.462 0.00 0.00 34.40 4.79
2823 5631 6.416631 AATAAAATAGTACTCCCTCCGTCC 57.583 41.667 0.00 0.00 0.00 4.79
2824 5632 1.978454 AATAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
2825 5633 1.135094 ATAGTACTCCCTCCGTCCGA 58.865 55.000 0.00 0.00 0.00 4.55
2826 5634 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
2827 5635 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
2828 5636 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2829 5637 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2830 5638 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2831 5639 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2832 5640 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2833 5641 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2834 5642 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2835 5643 1.664151 CCTCCGTCCGAAAATACTTGC 59.336 52.381 0.00 0.00 0.00 4.01
2836 5644 1.664151 CTCCGTCCGAAAATACTTGCC 59.336 52.381 0.00 0.00 0.00 4.52
2837 5645 0.372334 CCGTCCGAAAATACTTGCCG 59.628 55.000 0.00 0.00 0.00 5.69
2838 5646 0.372334 CGTCCGAAAATACTTGCCGG 59.628 55.000 0.00 0.00 41.36 6.13
2839 5647 1.729284 GTCCGAAAATACTTGCCGGA 58.271 50.000 5.05 0.00 45.74 5.14
2840 5648 2.018542 TCCGAAAATACTTGCCGGAG 57.981 50.000 5.05 0.00 43.47 4.63
2841 5649 1.551430 TCCGAAAATACTTGCCGGAGA 59.449 47.619 5.05 0.00 43.47 3.71
2842 5650 2.027929 TCCGAAAATACTTGCCGGAGAA 60.028 45.455 5.05 0.00 43.47 2.87
2843 5651 2.745281 CCGAAAATACTTGCCGGAGAAA 59.255 45.455 5.05 0.00 42.49 2.52
2844 5652 3.377172 CCGAAAATACTTGCCGGAGAAAT 59.623 43.478 5.05 0.00 42.49 2.17
2845 5653 4.342772 CGAAAATACTTGCCGGAGAAATG 58.657 43.478 5.05 0.00 0.00 2.32
2846 5654 4.672409 GAAAATACTTGCCGGAGAAATGG 58.328 43.478 5.05 0.00 0.00 3.16
2847 5655 3.644966 AATACTTGCCGGAGAAATGGA 57.355 42.857 5.05 0.00 0.00 3.41
2848 5656 3.864789 ATACTTGCCGGAGAAATGGAT 57.135 42.857 5.05 0.00 0.00 3.41
2849 5657 1.755179 ACTTGCCGGAGAAATGGATG 58.245 50.000 5.05 0.00 0.00 3.51
2850 5658 1.004745 ACTTGCCGGAGAAATGGATGT 59.995 47.619 5.05 0.00 0.00 3.06
2851 5659 2.238646 ACTTGCCGGAGAAATGGATGTA 59.761 45.455 5.05 0.00 0.00 2.29
2852 5660 3.117888 ACTTGCCGGAGAAATGGATGTAT 60.118 43.478 5.05 0.00 0.00 2.29
2853 5661 3.126001 TGCCGGAGAAATGGATGTATC 57.874 47.619 5.05 0.00 0.00 2.24
2854 5662 2.705658 TGCCGGAGAAATGGATGTATCT 59.294 45.455 5.05 0.00 0.00 1.98
2855 5663 3.901222 TGCCGGAGAAATGGATGTATCTA 59.099 43.478 5.05 0.00 0.00 1.98
2856 5664 4.021104 TGCCGGAGAAATGGATGTATCTAG 60.021 45.833 5.05 0.00 0.00 2.43
2857 5665 4.220821 GCCGGAGAAATGGATGTATCTAGA 59.779 45.833 5.05 0.00 0.00 2.43
2858 5666 5.105146 GCCGGAGAAATGGATGTATCTAGAT 60.105 44.000 5.05 10.73 0.00 1.98
2859 5667 6.336566 CCGGAGAAATGGATGTATCTAGATG 58.663 44.000 15.79 0.00 0.00 2.90
2860 5668 6.071108 CCGGAGAAATGGATGTATCTAGATGT 60.071 42.308 15.79 1.25 0.00 3.06
2861 5669 7.122799 CCGGAGAAATGGATGTATCTAGATGTA 59.877 40.741 15.79 4.44 0.00 2.29
2862 5670 8.690884 CGGAGAAATGGATGTATCTAGATGTAT 58.309 37.037 15.79 9.11 0.00 2.29
2898 5706 9.093458 AGATACATCCATTTTTATCCATTTCCC 57.907 33.333 0.00 0.00 0.00 3.97
2899 5707 6.499106 ACATCCATTTTTATCCATTTCCCC 57.501 37.500 0.00 0.00 0.00 4.81
2900 5708 5.070313 ACATCCATTTTTATCCATTTCCCCG 59.930 40.000 0.00 0.00 0.00 5.73
2901 5709 4.873010 TCCATTTTTATCCATTTCCCCGA 58.127 39.130 0.00 0.00 0.00 5.14
2902 5710 4.647399 TCCATTTTTATCCATTTCCCCGAC 59.353 41.667 0.00 0.00 0.00 4.79
2903 5711 4.404073 CCATTTTTATCCATTTCCCCGACA 59.596 41.667 0.00 0.00 0.00 4.35
2904 5712 5.105146 CCATTTTTATCCATTTCCCCGACAA 60.105 40.000 0.00 0.00 0.00 3.18
2905 5713 5.652994 TTTTTATCCATTTCCCCGACAAG 57.347 39.130 0.00 0.00 0.00 3.16
2906 5714 4.310022 TTTATCCATTTCCCCGACAAGT 57.690 40.909 0.00 0.00 0.00 3.16
2907 5715 5.438698 TTTATCCATTTCCCCGACAAGTA 57.561 39.130 0.00 0.00 0.00 2.24
2908 5716 5.640158 TTATCCATTTCCCCGACAAGTAT 57.360 39.130 0.00 0.00 0.00 2.12
2909 5717 4.519906 ATCCATTTCCCCGACAAGTATT 57.480 40.909 0.00 0.00 0.00 1.89
2910 5718 4.310022 TCCATTTCCCCGACAAGTATTT 57.690 40.909 0.00 0.00 0.00 1.40
2911 5719 4.668636 TCCATTTCCCCGACAAGTATTTT 58.331 39.130 0.00 0.00 0.00 1.82
2912 5720 4.703093 TCCATTTCCCCGACAAGTATTTTC 59.297 41.667 0.00 0.00 0.00 2.29
2913 5721 4.705023 CCATTTCCCCGACAAGTATTTTCT 59.295 41.667 0.00 0.00 0.00 2.52
2914 5722 5.883673 CCATTTCCCCGACAAGTATTTTCTA 59.116 40.000 0.00 0.00 0.00 2.10
2915 5723 6.038271 CCATTTCCCCGACAAGTATTTTCTAG 59.962 42.308 0.00 0.00 0.00 2.43
2916 5724 6.363167 TTTCCCCGACAAGTATTTTCTAGA 57.637 37.500 0.00 0.00 0.00 2.43
2917 5725 5.334724 TCCCCGACAAGTATTTTCTAGAC 57.665 43.478 0.00 0.00 0.00 2.59
2918 5726 4.110482 CCCCGACAAGTATTTTCTAGACG 58.890 47.826 0.00 0.00 0.00 4.18
2919 5727 4.110482 CCCGACAAGTATTTTCTAGACGG 58.890 47.826 0.00 0.00 37.02 4.79
2920 5728 4.142315 CCCGACAAGTATTTTCTAGACGGA 60.142 45.833 11.41 0.00 39.11 4.69
2921 5729 5.035443 CCGACAAGTATTTTCTAGACGGAG 58.965 45.833 5.44 0.00 39.11 4.63
2922 5730 5.035443 CGACAAGTATTTTCTAGACGGAGG 58.965 45.833 0.00 0.00 0.00 4.30
2923 5731 5.340439 ACAAGTATTTTCTAGACGGAGGG 57.660 43.478 0.00 0.00 0.00 4.30
2924 5732 5.021458 ACAAGTATTTTCTAGACGGAGGGA 58.979 41.667 0.00 0.00 0.00 4.20
3222 6030 2.298610 TGTAGGTATGGTGAGAGCGAG 58.701 52.381 0.00 0.00 0.00 5.03
3284 6092 4.201901 GGTTTGTTGTTTCCTGCATTTTGG 60.202 41.667 0.00 0.00 0.00 3.28
3360 6168 1.069823 AGGCCGCACTTGATCATCTAG 59.930 52.381 0.00 0.00 0.00 2.43
3488 6296 8.334263 TCATTGTAAACTGATTTGTCTATGCA 57.666 30.769 0.00 0.00 0.00 3.96
3489 6297 8.959548 TCATTGTAAACTGATTTGTCTATGCAT 58.040 29.630 3.79 3.79 0.00 3.96
3533 6341 4.840716 AGGTTCATTTGATCTCTCTGCT 57.159 40.909 0.00 0.00 0.00 4.24
3609 6417 8.905660 ATTTCATTGGATCAACATTCAAAACA 57.094 26.923 0.00 0.00 30.74 2.83
3610 6418 8.905660 TTTCATTGGATCAACATTCAAAACAT 57.094 26.923 0.00 0.00 30.74 2.71
3611 6419 7.892778 TCATTGGATCAACATTCAAAACATG 57.107 32.000 0.00 0.00 30.74 3.21
3612 6420 6.369340 TCATTGGATCAACATTCAAAACATGC 59.631 34.615 0.00 0.00 30.74 4.06
3613 6421 5.211174 TGGATCAACATTCAAAACATGCA 57.789 34.783 0.00 0.00 0.00 3.96
3614 6422 5.795972 TGGATCAACATTCAAAACATGCAT 58.204 33.333 0.00 0.00 0.00 3.96
3644 6452 0.898326 TGAGTCGCCTAGCCAAGTCA 60.898 55.000 0.00 0.00 0.00 3.41
3648 6456 0.685097 TCGCCTAGCCAAGTCAAGTT 59.315 50.000 0.00 0.00 0.00 2.66
4284 7153 1.009389 CAACCTCGCTCCAACGACTC 61.009 60.000 0.00 0.00 37.09 3.36
4445 7314 8.316640 AGATTGTGAAGAATGTTAAGACTGTC 57.683 34.615 0.00 0.00 0.00 3.51
4449 7318 6.821160 TGTGAAGAATGTTAAGACTGTCACAA 59.179 34.615 10.88 0.32 39.72 3.33
4495 7364 5.655090 ACACATGATCATGACCATTGTTGAT 59.345 36.000 36.37 11.34 41.20 2.57
4522 7394 6.183360 GCAGATAGGTGGTTACAGTCTTGATA 60.183 42.308 0.00 0.00 0.00 2.15
4549 7421 7.428282 TGCTGAAAATCAAACGATGTTAGTA 57.572 32.000 0.00 0.00 0.00 1.82
4551 7423 7.962373 TGCTGAAAATCAAACGATGTTAGTATG 59.038 33.333 0.00 0.00 0.00 2.39
4577 7891 4.888326 AAGGCAGCATATAGGAGAGAAG 57.112 45.455 0.00 0.00 0.00 2.85
4647 7961 3.137176 CCTTCCATCTAGATTGGCCAGAA 59.863 47.826 5.11 1.48 0.00 3.02
4651 7965 3.135348 CCATCTAGATTGGCCAGAACTCA 59.865 47.826 5.11 0.00 0.00 3.41
4666 9553 7.407337 GCCAGAACTCAATAACTTAAATACCG 58.593 38.462 0.00 0.00 0.00 4.02
4671 9558 8.959734 AACTCAATAACTTAAATACCGCAAAC 57.040 30.769 0.00 0.00 0.00 2.93
4686 9573 1.986882 CAAACCAGCTTCCAGACCTT 58.013 50.000 0.00 0.00 0.00 3.50
4691 9578 1.202806 CCAGCTTCCAGACCTTGTTCA 60.203 52.381 0.00 0.00 0.00 3.18
4715 9602 5.650703 ACCCATTAAAGGAAATTACGTCCAG 59.349 40.000 0.00 0.00 37.65 3.86
4725 9612 2.335316 TTACGTCCAGCCAACACTTT 57.665 45.000 0.00 0.00 0.00 2.66
4731 9618 3.810941 CGTCCAGCCAACACTTTACTTTA 59.189 43.478 0.00 0.00 0.00 1.85
4753 9640 5.091261 AGTGATCAACATAGGACACCTTC 57.909 43.478 0.00 0.00 34.61 3.46
4778 9665 5.803020 AAAGCAGGCTCTTAGATTTTACG 57.197 39.130 0.00 0.00 0.00 3.18
4812 9699 2.825532 GTCATGTGGTTAGGGCAACATT 59.174 45.455 0.00 0.00 39.04 2.71
4858 9745 9.482627 AAGCTAATAACATCTATAGAAGTGTGC 57.517 33.333 11.19 8.87 0.00 4.57
4880 9767 2.174363 AGCTTTGGCCTTTGCAATTC 57.826 45.000 3.32 0.00 40.13 2.17
5092 9979 2.297701 GTTGCAGAGGTGAGTTTTGGA 58.702 47.619 0.00 0.00 0.00 3.53
5174 10062 9.744468 CCGTATTCTTATTTTTAATCTTTGGGG 57.256 33.333 0.00 0.00 0.00 4.96
5344 10235 5.365619 TCAGATCTTTATTTTAGTCCGCCC 58.634 41.667 0.00 0.00 0.00 6.13
5533 10431 0.328258 AAGATGAACTGGTTCCCCCG 59.672 55.000 10.44 0.00 38.77 5.73
5604 10502 5.782893 TGTAGGTTTGTTGATTTTCCCAG 57.217 39.130 0.00 0.00 0.00 4.45
5681 10579 8.620416 CAATCGAATTGTTTCTGGACCAATATA 58.380 33.333 0.00 0.00 35.57 0.86
5743 10641 8.408601 AGTGAAATTGCTGATGATGGTAATTAC 58.591 33.333 7.09 7.09 30.14 1.89
5781 10680 8.947055 ACCAATTCATTATAACATTTTCCTGC 57.053 30.769 0.00 0.00 0.00 4.85
5905 10804 8.208718 TGGCAATACTGAATAGTGAATACAAC 57.791 34.615 0.00 0.00 37.78 3.32
5929 10828 8.831715 ACCATTTGTATCTTCAATTTTGGAAC 57.168 30.769 0.00 0.00 32.11 3.62
6083 10985 2.198827 TGTTGATGCAATTCCGGTCT 57.801 45.000 0.00 0.00 0.00 3.85
6132 11037 4.220602 ACAATTAATTCAGGTGGTTCTGCC 59.779 41.667 0.00 0.00 34.91 4.85
6181 11086 8.806146 AGCTGTGAATATATTTTGAGGTTGTTT 58.194 29.630 0.00 0.00 0.00 2.83
6202 11107 0.393944 CCATCCTGTGATGCTGCTGT 60.394 55.000 0.00 0.00 45.86 4.40
6337 11271 6.462487 CCTTGGTGTATGACGGTTCAGTATAT 60.462 42.308 0.00 0.00 34.35 0.86
6448 11383 4.706842 ACCTGCAGTTTTCCTTAGAAGA 57.293 40.909 13.81 0.00 32.35 2.87
6595 11534 3.057315 GCAGTGCCATGACAGTACAAAAT 60.057 43.478 2.85 0.00 0.00 1.82
6599 11538 5.048504 AGTGCCATGACAGTACAAAATCAAG 60.049 40.000 0.00 0.00 0.00 3.02
6603 11542 6.381801 CCATGACAGTACAAAATCAAGGTTC 58.618 40.000 0.00 0.00 0.00 3.62
6619 11558 8.773033 ATCAAGGTTCAGCAAATATTTCCTAT 57.227 30.769 0.00 0.00 0.00 2.57
6642 11581 0.245539 GCTTGCAGTGCCATGACAAT 59.754 50.000 13.72 0.00 0.00 2.71
6643 11582 1.473677 GCTTGCAGTGCCATGACAATA 59.526 47.619 13.72 0.00 0.00 1.90
6651 11590 3.057596 AGTGCCATGACAATACAAAACCG 60.058 43.478 0.00 0.00 0.00 4.44
6716 11655 7.591407 CAACAACGCAATAATATCAGAAAACG 58.409 34.615 0.00 0.00 0.00 3.60
6728 11667 5.830000 ATCAGAAAACGCCCTAATAAACC 57.170 39.130 0.00 0.00 0.00 3.27
6730 11669 5.258051 TCAGAAAACGCCCTAATAAACCAT 58.742 37.500 0.00 0.00 0.00 3.55
6731 11670 6.416415 TCAGAAAACGCCCTAATAAACCATA 58.584 36.000 0.00 0.00 0.00 2.74
6732 11671 6.316890 TCAGAAAACGCCCTAATAAACCATAC 59.683 38.462 0.00 0.00 0.00 2.39
6738 11677 5.127491 CGCCCTAATAAACCATACTTTCCA 58.873 41.667 0.00 0.00 0.00 3.53
6740 11679 6.095720 CGCCCTAATAAACCATACTTTCCAAA 59.904 38.462 0.00 0.00 0.00 3.28
6741 11680 7.489160 GCCCTAATAAACCATACTTTCCAAAG 58.511 38.462 0.00 0.00 41.73 2.77
6743 11682 9.031537 CCCTAATAAACCATACTTTCCAAAGTT 57.968 33.333 9.92 0.00 46.52 2.66
6744 11683 9.855021 CCTAATAAACCATACTTTCCAAAGTTG 57.145 33.333 9.92 8.19 46.52 3.16
6755 11694 3.799281 TCCAAAGTTGTCAAGCAAAGG 57.201 42.857 0.00 0.00 39.03 3.11
6783 11722 1.247567 GGCTTGCCTTGCTCAAAGTA 58.752 50.000 4.11 0.00 33.66 2.24
6786 11725 2.034558 GCTTGCCTTGCTCAAAGTAACA 59.965 45.455 0.00 0.00 33.66 2.41
6790 11729 2.096218 GCCTTGCTCAAAGTAACAGTCG 60.096 50.000 0.00 0.00 33.66 4.18
6794 11733 4.054780 TGCTCAAAGTAACAGTCGAAGT 57.945 40.909 0.00 0.00 0.00 3.01
6795 11734 5.190992 TGCTCAAAGTAACAGTCGAAGTA 57.809 39.130 0.00 0.00 0.00 2.24
6796 11735 5.779922 TGCTCAAAGTAACAGTCGAAGTAT 58.220 37.500 0.00 0.00 0.00 2.12
6797 11736 6.220930 TGCTCAAAGTAACAGTCGAAGTATT 58.779 36.000 0.00 0.00 0.00 1.89
6798 11737 6.365247 TGCTCAAAGTAACAGTCGAAGTATTC 59.635 38.462 0.00 0.00 43.09 1.75
6828 11767 6.889198 TGGATCGATCTTCAAAACCTAGAAT 58.111 36.000 23.96 0.00 0.00 2.40
6918 11861 5.885230 TCTAGGCAGATCACAAAAATGTG 57.115 39.130 2.60 2.60 40.90 3.21
6944 11887 5.780793 ACAAAATACTACTGGACAGAGGACT 59.219 40.000 6.29 0.00 0.00 3.85
6953 11896 4.252073 CTGGACAGAGGACTTCAAATGAG 58.748 47.826 0.00 0.00 0.00 2.90
6964 11907 7.655490 AGGACTTCAAATGAGAAACATTGAAG 58.345 34.615 19.82 19.82 46.90 3.02
7006 11952 9.155975 ACTTAAAATGAGTGTGATATCACTGAC 57.844 33.333 30.67 22.78 46.81 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.110823 GTGGAACAACGATGTGCGAC 60.111 55.000 3.24 3.24 44.16 5.19
17 18 2.230892 GTGGAACAACGATGTGCGA 58.769 52.632 0.00 0.00 44.16 5.10
18 19 4.818417 GTGGAACAACGATGTGCG 57.182 55.556 0.00 0.00 44.16 5.34
36 37 1.642762 AGGCCTTCAGATTGGACCATT 59.357 47.619 0.00 0.00 29.76 3.16
38 39 1.075601 AAGGCCTTCAGATTGGACCA 58.924 50.000 13.78 0.00 29.76 4.02
40 41 2.095461 GGAAAGGCCTTCAGATTGGAC 58.905 52.381 20.79 2.23 35.55 4.02
59 60 2.656560 CTCTTTGACAGAGTACCGGG 57.343 55.000 6.32 0.00 43.96 5.73
68 69 7.541091 CACCATGATGATTTTTCTCTTTGACAG 59.459 37.037 0.00 0.00 0.00 3.51
71 72 6.572898 GCCACCATGATGATTTTTCTCTTTGA 60.573 38.462 0.00 0.00 0.00 2.69
72 73 5.579511 GCCACCATGATGATTTTTCTCTTTG 59.420 40.000 0.00 0.00 0.00 2.77
74 75 4.161001 GGCCACCATGATGATTTTTCTCTT 59.839 41.667 0.00 0.00 0.00 2.85
77 78 3.443052 TGGCCACCATGATGATTTTTCT 58.557 40.909 0.00 0.00 0.00 2.52
79 80 4.035112 AGATGGCCACCATGATGATTTTT 58.965 39.130 8.16 0.00 45.26 1.94
80 81 3.640029 GAGATGGCCACCATGATGATTTT 59.360 43.478 8.16 0.00 45.26 1.82
90 91 0.034186 GTTGATGGAGATGGCCACCA 60.034 55.000 15.44 15.44 41.56 4.17
119 120 2.098117 CGTCGAACCGGTAGAATTAGGT 59.902 50.000 8.00 0.00 38.88 3.08
120 121 2.724349 CGTCGAACCGGTAGAATTAGG 58.276 52.381 8.00 0.00 0.00 2.69
133 134 2.737376 GGGACACAGGCGTCGAAC 60.737 66.667 0.00 0.00 36.73 3.95
144 145 3.300013 CGAAGGAGGAGGGGACAC 58.700 66.667 0.00 0.00 0.00 3.67
185 250 2.121963 AACAGGAGGAGGGTGGCA 60.122 61.111 0.00 0.00 0.00 4.92
187 252 1.538876 TGGAACAGGAGGAGGGTGG 60.539 63.158 0.00 0.00 0.00 4.61
188 253 4.232905 TGGAACAGGAGGAGGGTG 57.767 61.111 0.00 0.00 0.00 4.61
210 275 2.585791 GAAGCAGGGAGAAGGAGGCG 62.586 65.000 0.00 0.00 0.00 5.52
235 302 3.139397 ACCTATCTCCGAACTCTCTGGAT 59.861 47.826 0.00 0.00 0.00 3.41
238 305 2.546368 CGACCTATCTCCGAACTCTCTG 59.454 54.545 0.00 0.00 0.00 3.35
249 316 1.599916 GCGTTGTAGCCGACCTATCTC 60.600 57.143 0.00 0.00 0.00 2.75
291 358 4.101448 AGGTGGAGATGCACGCCC 62.101 66.667 0.00 0.00 38.00 6.13
292 359 2.821366 CAGGTGGAGATGCACGCC 60.821 66.667 0.00 0.00 38.95 5.68
293 360 2.821366 CCAGGTGGAGATGCACGC 60.821 66.667 0.00 0.00 37.39 5.34
326 393 3.822940 ACTACAAAATGTTGACCCCGAA 58.177 40.909 1.62 0.00 38.20 4.30
336 403 5.163131 ACCAAGGTCACCTACTACAAAATGT 60.163 40.000 0.00 0.00 31.13 2.71
392 459 1.735360 CACACACCAGCCCACTTTG 59.265 57.895 0.00 0.00 0.00 2.77
393 460 2.127232 GCACACACCAGCCCACTTT 61.127 57.895 0.00 0.00 0.00 2.66
416 483 2.024729 CGAGCTGCTATCGCGACA 59.975 61.111 12.93 0.00 39.65 4.35
440 507 1.601248 CCCATTTTCTCCCCCTCTCT 58.399 55.000 0.00 0.00 0.00 3.10
442 509 1.584717 GCCCCATTTTCTCCCCCTCT 61.585 60.000 0.00 0.00 0.00 3.69
449 516 0.819666 CCTAGCCGCCCCATTTTCTC 60.820 60.000 0.00 0.00 0.00 2.87
486 553 5.245301 GGGACAAAACCTGGCTATTTAAACT 59.755 40.000 0.00 0.00 31.36 2.66
499 566 1.004918 CGCTCGAGGGACAAAACCT 60.005 57.895 24.08 0.00 42.18 3.50
514 581 0.664767 GTCTCTGTTTCAGCGTCGCT 60.665 55.000 15.47 15.47 40.77 4.93
516 583 1.388093 CATGTCTCTGTTTCAGCGTCG 59.612 52.381 0.00 0.00 0.00 5.12
522 589 6.870439 CAGTCTACATTCATGTCTCTGTTTCA 59.130 38.462 0.00 0.00 41.97 2.69
526 593 4.774726 ACCAGTCTACATTCATGTCTCTGT 59.225 41.667 0.00 0.00 41.97 3.41
530 597 4.382470 GCTCACCAGTCTACATTCATGTCT 60.382 45.833 0.00 0.00 41.97 3.41
557 624 2.504367 CAAGGAAACCATCGTTCCACT 58.496 47.619 6.01 0.00 34.01 4.00
591 658 1.081376 GTCTGTCACGTCGGACTGG 60.081 63.158 6.57 0.00 39.71 4.00
627 694 2.357517 GGCGGATATGAGGTGGCG 60.358 66.667 0.00 0.00 0.00 5.69
638 705 1.131638 ACCTCATATGTGTGGCGGAT 58.868 50.000 10.16 0.00 41.62 4.18
656 723 4.918810 AAAAGACATCCCTCAAACACAC 57.081 40.909 0.00 0.00 0.00 3.82
681 750 1.382522 CACCCCTCAATTGATGTCGG 58.617 55.000 8.96 6.54 0.00 4.79
703 772 3.447586 TCAGAATGGTTCGCTAGCTAACT 59.552 43.478 25.81 11.12 36.16 2.24
723 792 3.785887 ACTGGCTCCTTTATACCCATTCA 59.214 43.478 0.00 0.00 0.00 2.57
726 795 3.117512 CCAACTGGCTCCTTTATACCCAT 60.118 47.826 0.00 0.00 0.00 4.00
753 822 5.529581 TCTGTCACTGCCGAATCATATTA 57.470 39.130 0.00 0.00 0.00 0.98
783 3326 3.709653 TCAAACACCTATAAGCTCCGGAT 59.290 43.478 3.57 0.00 0.00 4.18
796 3583 1.450211 CCGGACCACTCAAACACCT 59.550 57.895 0.00 0.00 0.00 4.00
799 3586 0.034337 GTAGCCGGACCACTCAAACA 59.966 55.000 5.05 0.00 0.00 2.83
826 3613 1.374343 CTACGGCTCTAGGCACGTCA 61.374 60.000 16.54 8.25 43.08 4.35
827 3614 1.094073 TCTACGGCTCTAGGCACGTC 61.094 60.000 16.54 0.00 43.08 4.34
828 3615 1.077930 TCTACGGCTCTAGGCACGT 60.078 57.895 16.94 16.94 44.91 4.49
829 3616 1.355916 GTCTACGGCTCTAGGCACG 59.644 63.158 4.30 8.35 44.01 5.34
830 3617 1.355916 CGTCTACGGCTCTAGGCAC 59.644 63.158 4.30 0.00 44.01 5.01
831 3618 2.478890 GCGTCTACGGCTCTAGGCA 61.479 63.158 4.49 0.00 44.01 4.75
832 3619 2.332159 GCGTCTACGGCTCTAGGC 59.668 66.667 4.49 0.00 40.23 3.93
833 3620 1.355916 GTGCGTCTACGGCTCTAGG 59.644 63.158 4.49 0.00 40.23 3.02
835 3622 0.450583 CTTGTGCGTCTACGGCTCTA 59.549 55.000 4.49 0.00 40.23 2.43
836 3623 1.213013 CTTGTGCGTCTACGGCTCT 59.787 57.895 4.49 0.00 40.23 4.09
837 3624 0.798771 CTCTTGTGCGTCTACGGCTC 60.799 60.000 4.49 0.00 40.23 4.70
838 3625 1.213013 CTCTTGTGCGTCTACGGCT 59.787 57.895 4.49 0.00 40.23 5.52
839 3626 2.445438 GCTCTTGTGCGTCTACGGC 61.445 63.158 4.49 0.00 40.23 5.68
840 3627 0.798771 GAGCTCTTGTGCGTCTACGG 60.799 60.000 6.43 0.00 40.23 4.02
841 3628 0.169230 AGAGCTCTTGTGCGTCTACG 59.831 55.000 11.45 0.00 43.27 3.51
842 3629 1.623359 CAGAGCTCTTGTGCGTCTAC 58.377 55.000 15.27 0.00 38.13 2.59
884 3672 3.198417 GGGTCGGATTTGGGTTTAGTCTA 59.802 47.826 0.00 0.00 0.00 2.59
885 3673 2.026542 GGGTCGGATTTGGGTTTAGTCT 60.027 50.000 0.00 0.00 0.00 3.24
1248 4036 1.686110 GGGAGGATCGGTGACTGGT 60.686 63.158 0.00 0.00 34.37 4.00
1255 4043 1.689582 GAGGTTGGGGAGGATCGGT 60.690 63.158 0.00 0.00 34.37 4.69
1303 4091 3.198068 ACCGATCGAATCATTGGACAAG 58.802 45.455 18.66 0.00 32.10 3.16
1304 4092 3.260475 ACCGATCGAATCATTGGACAA 57.740 42.857 18.66 0.00 32.10 3.18
1315 4103 3.021695 ACAGTTCCTGATACCGATCGAA 58.978 45.455 18.66 4.43 34.49 3.71
1333 4121 1.006832 CGCTCCAATAACCCGAACAG 58.993 55.000 0.00 0.00 0.00 3.16
1354 4142 0.970937 TCGAAGAGATCCACCGCCTT 60.971 55.000 0.00 0.00 0.00 4.35
1383 4171 0.684479 GGGTCAAAGCCAATCCCTCC 60.684 60.000 0.00 0.00 35.40 4.30
1394 4182 1.068434 ACCACGCAATTTGGGTCAAAG 59.932 47.619 15.42 8.10 41.87 2.77
1403 4191 3.377172 GCCACTATCTAACCACGCAATTT 59.623 43.478 0.00 0.00 0.00 1.82
1414 4202 1.746787 TGAAGCGACGCCACTATCTAA 59.253 47.619 17.79 0.00 0.00 2.10
1534 4322 9.268268 CGGCAGTAAAGTTCAAATCCTATTATA 57.732 33.333 0.00 0.00 0.00 0.98
1535 4323 7.255139 GCGGCAGTAAAGTTCAAATCCTATTAT 60.255 37.037 0.00 0.00 0.00 1.28
1646 4434 2.300433 TGGCCAATCAATCCTGAATCG 58.700 47.619 0.61 0.00 34.49 3.34
1666 4454 8.591072 ATTCCAATTGAAACTCATTGTGAGATT 58.409 29.630 13.46 7.94 41.32 2.40
1786 4582 6.127451 TGACATCTGTACGGTCTATTGAACAT 60.127 38.462 0.64 0.00 32.84 2.71
1803 4599 4.450757 TGTGTTTAACGGTCATGACATCTG 59.549 41.667 26.47 15.02 0.00 2.90
1820 4616 4.564199 GGAATCTAACCCTACCGTGTGTTT 60.564 45.833 0.00 0.00 0.00 2.83
1857 4653 8.487313 AGCAATACGTCACAATAAAAGTATGA 57.513 30.769 0.00 0.00 0.00 2.15
1877 4679 4.095483 CCGCATAGAGACAAAGAAAGCAAT 59.905 41.667 0.00 0.00 0.00 3.56
1898 4700 5.959527 GTGATGCGATGCAAATATATAACCG 59.040 40.000 0.00 0.00 43.62 4.44
2077 4882 3.356529 TTTCCCATCTCTTCCTGCTTC 57.643 47.619 0.00 0.00 0.00 3.86
2145 4950 5.895636 TGACATGCCGAAGTATTTTGAAT 57.104 34.783 0.00 0.00 0.00 2.57
2158 4963 2.030893 AGACAAATGTGTTGACATGCCG 60.031 45.455 0.00 0.00 42.30 5.69
2207 5013 7.182930 AGGTGATTAGAAGGAAGTAGGTTCAAT 59.817 37.037 0.00 0.00 36.82 2.57
2209 5015 6.023603 AGGTGATTAGAAGGAAGTAGGTTCA 58.976 40.000 0.00 0.00 36.82 3.18
2220 5026 6.015940 AGTGAAAAGCAAAGGTGATTAGAAGG 60.016 38.462 0.00 0.00 30.32 3.46
2223 5029 6.061441 TGAGTGAAAAGCAAAGGTGATTAGA 58.939 36.000 0.00 0.00 30.32 2.10
2227 5033 5.510179 CCAATGAGTGAAAAGCAAAGGTGAT 60.510 40.000 0.00 0.00 0.00 3.06
2235 5041 0.968405 GGGCCAATGAGTGAAAAGCA 59.032 50.000 4.39 0.00 0.00 3.91
2242 5048 0.033796 ACATCTGGGGCCAATGAGTG 60.034 55.000 16.72 0.00 0.00 3.51
2244 5050 0.033796 ACACATCTGGGGCCAATGAG 60.034 55.000 16.72 12.26 0.00 2.90
2279 5085 9.143631 ACAAATTCTAATTTTGCAGATAGTTGC 57.856 29.630 0.00 0.00 39.20 4.17
2291 5097 8.477984 AACGCATGCATACAAATTCTAATTTT 57.522 26.923 19.57 0.00 36.52 1.82
2525 5333 5.679734 TGTGAAATGCTCTCTTGAAACTC 57.320 39.130 0.00 0.00 0.00 3.01
2565 5373 1.401552 CGAGAGGACTGAAGCTCTGAG 59.598 57.143 0.00 0.00 0.00 3.35
2585 5393 5.059161 TGCTATCAGTGATGTAGGAAATGC 58.941 41.667 16.15 6.46 0.00 3.56
2628 5436 2.352960 GCACACTAGTTCCTAAGCATGC 59.647 50.000 10.51 10.51 0.00 4.06
2633 5441 5.971763 AGATTGAGCACACTAGTTCCTAAG 58.028 41.667 0.00 0.00 0.00 2.18
2644 5452 4.558538 ACAAACTGAAGATTGAGCACAC 57.441 40.909 7.25 0.00 32.92 3.82
2681 5489 4.221703 AGACAACAATGTGGGAACAAAACA 59.778 37.500 0.00 0.00 46.06 2.83
2749 5557 0.326595 TACTGCCGGCATTTTCCTGA 59.673 50.000 32.87 4.85 0.00 3.86
2795 5603 8.637099 ACGGAGGGAGTACTATTTTATTAGTTC 58.363 37.037 0.00 0.00 34.35 3.01
2798 5606 7.574592 CGGACGGAGGGAGTACTATTTTATTAG 60.575 44.444 0.00 0.00 0.00 1.73
2800 5608 5.010415 CGGACGGAGGGAGTACTATTTTATT 59.990 44.000 0.00 0.00 0.00 1.40
2808 5616 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
2809 5617 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
2810 5618 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2811 5619 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2812 5620 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2813 5621 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2814 5622 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2815 5623 1.664151 GCAAGTATTTTCGGACGGAGG 59.336 52.381 0.00 0.00 0.00 4.30
2816 5624 1.664151 GGCAAGTATTTTCGGACGGAG 59.336 52.381 0.00 0.00 0.00 4.63
2817 5625 1.729284 GGCAAGTATTTTCGGACGGA 58.271 50.000 0.00 0.00 0.00 4.69
2818 5626 0.372334 CGGCAAGTATTTTCGGACGG 59.628 55.000 0.00 0.00 0.00 4.79
2819 5627 0.372334 CCGGCAAGTATTTTCGGACG 59.628 55.000 0.00 0.00 42.94 4.79
2820 5628 1.664151 CTCCGGCAAGTATTTTCGGAC 59.336 52.381 0.00 0.00 43.84 4.79
2821 5629 1.551430 TCTCCGGCAAGTATTTTCGGA 59.449 47.619 0.00 10.40 46.06 4.55
2822 5630 2.018542 TCTCCGGCAAGTATTTTCGG 57.981 50.000 0.00 0.00 41.80 4.30
2823 5631 4.342772 CATTTCTCCGGCAAGTATTTTCG 58.657 43.478 0.00 0.00 0.00 3.46
2824 5632 4.398044 TCCATTTCTCCGGCAAGTATTTTC 59.602 41.667 0.00 0.00 0.00 2.29
2825 5633 4.340617 TCCATTTCTCCGGCAAGTATTTT 58.659 39.130 0.00 0.00 0.00 1.82
2826 5634 3.963129 TCCATTTCTCCGGCAAGTATTT 58.037 40.909 0.00 0.00 0.00 1.40
2827 5635 3.644966 TCCATTTCTCCGGCAAGTATT 57.355 42.857 0.00 0.00 0.00 1.89
2828 5636 3.117888 ACATCCATTTCTCCGGCAAGTAT 60.118 43.478 0.00 0.00 0.00 2.12
2829 5637 2.238646 ACATCCATTTCTCCGGCAAGTA 59.761 45.455 0.00 0.00 0.00 2.24
2830 5638 1.004745 ACATCCATTTCTCCGGCAAGT 59.995 47.619 0.00 0.00 0.00 3.16
2831 5639 1.755179 ACATCCATTTCTCCGGCAAG 58.245 50.000 0.00 0.00 0.00 4.01
2832 5640 3.136443 AGATACATCCATTTCTCCGGCAA 59.864 43.478 0.00 0.00 0.00 4.52
2833 5641 2.705658 AGATACATCCATTTCTCCGGCA 59.294 45.455 0.00 0.00 0.00 5.69
2834 5642 3.409026 AGATACATCCATTTCTCCGGC 57.591 47.619 0.00 0.00 0.00 6.13
2835 5643 5.984695 TCTAGATACATCCATTTCTCCGG 57.015 43.478 0.00 0.00 0.00 5.14
2836 5644 6.929625 ACATCTAGATACATCCATTTCTCCG 58.070 40.000 4.54 0.00 0.00 4.63
2872 5680 9.093458 GGGAAATGGATAAAAATGGATGTATCT 57.907 33.333 0.00 0.00 0.00 1.98
2873 5681 8.314021 GGGGAAATGGATAAAAATGGATGTATC 58.686 37.037 0.00 0.00 0.00 2.24
2874 5682 7.039082 CGGGGAAATGGATAAAAATGGATGTAT 60.039 37.037 0.00 0.00 0.00 2.29
2875 5683 6.266558 CGGGGAAATGGATAAAAATGGATGTA 59.733 38.462 0.00 0.00 0.00 2.29
2876 5684 5.070313 CGGGGAAATGGATAAAAATGGATGT 59.930 40.000 0.00 0.00 0.00 3.06
2877 5685 5.304101 TCGGGGAAATGGATAAAAATGGATG 59.696 40.000 0.00 0.00 0.00 3.51
2878 5686 5.304357 GTCGGGGAAATGGATAAAAATGGAT 59.696 40.000 0.00 0.00 0.00 3.41
2879 5687 4.647399 GTCGGGGAAATGGATAAAAATGGA 59.353 41.667 0.00 0.00 0.00 3.41
2880 5688 4.404073 TGTCGGGGAAATGGATAAAAATGG 59.596 41.667 0.00 0.00 0.00 3.16
2881 5689 5.590530 TGTCGGGGAAATGGATAAAAATG 57.409 39.130 0.00 0.00 0.00 2.32
2882 5690 5.719563 ACTTGTCGGGGAAATGGATAAAAAT 59.280 36.000 0.00 0.00 0.00 1.82
2883 5691 5.081032 ACTTGTCGGGGAAATGGATAAAAA 58.919 37.500 0.00 0.00 0.00 1.94
2884 5692 4.668636 ACTTGTCGGGGAAATGGATAAAA 58.331 39.130 0.00 0.00 0.00 1.52
2885 5693 4.310022 ACTTGTCGGGGAAATGGATAAA 57.690 40.909 0.00 0.00 0.00 1.40
2886 5694 5.640158 ATACTTGTCGGGGAAATGGATAA 57.360 39.130 0.00 0.00 0.00 1.75
2887 5695 5.640158 AATACTTGTCGGGGAAATGGATA 57.360 39.130 0.00 0.00 0.00 2.59
2888 5696 4.519906 AATACTTGTCGGGGAAATGGAT 57.480 40.909 0.00 0.00 0.00 3.41
2889 5697 4.310022 AAATACTTGTCGGGGAAATGGA 57.690 40.909 0.00 0.00 0.00 3.41
2890 5698 4.705023 AGAAAATACTTGTCGGGGAAATGG 59.295 41.667 0.00 0.00 0.00 3.16
2891 5699 5.897377 AGAAAATACTTGTCGGGGAAATG 57.103 39.130 0.00 0.00 0.00 2.32
2892 5700 6.822170 GTCTAGAAAATACTTGTCGGGGAAAT 59.178 38.462 0.00 0.00 0.00 2.17
2893 5701 6.168389 GTCTAGAAAATACTTGTCGGGGAAA 58.832 40.000 0.00 0.00 0.00 3.13
2894 5702 5.622914 CGTCTAGAAAATACTTGTCGGGGAA 60.623 44.000 0.00 0.00 0.00 3.97
2895 5703 4.142315 CGTCTAGAAAATACTTGTCGGGGA 60.142 45.833 0.00 0.00 0.00 4.81
2896 5704 4.110482 CGTCTAGAAAATACTTGTCGGGG 58.890 47.826 0.00 0.00 0.00 5.73
2897 5705 4.110482 CCGTCTAGAAAATACTTGTCGGG 58.890 47.826 0.00 0.00 39.11 5.14
2898 5706 4.990257 TCCGTCTAGAAAATACTTGTCGG 58.010 43.478 0.00 0.00 41.76 4.79
2899 5707 5.035443 CCTCCGTCTAGAAAATACTTGTCG 58.965 45.833 0.00 0.00 0.00 4.35
2900 5708 5.126707 TCCCTCCGTCTAGAAAATACTTGTC 59.873 44.000 0.00 0.00 0.00 3.18
2901 5709 5.021458 TCCCTCCGTCTAGAAAATACTTGT 58.979 41.667 0.00 0.00 0.00 3.16
2902 5710 5.127356 ACTCCCTCCGTCTAGAAAATACTTG 59.873 44.000 0.00 0.00 0.00 3.16
2903 5711 5.270794 ACTCCCTCCGTCTAGAAAATACTT 58.729 41.667 0.00 0.00 0.00 2.24
2904 5712 4.869451 ACTCCCTCCGTCTAGAAAATACT 58.131 43.478 0.00 0.00 0.00 2.12
2905 5713 6.716173 AGATACTCCCTCCGTCTAGAAAATAC 59.284 42.308 0.00 0.00 0.00 1.89
2906 5714 6.850234 AGATACTCCCTCCGTCTAGAAAATA 58.150 40.000 0.00 0.00 0.00 1.40
2907 5715 5.707495 AGATACTCCCTCCGTCTAGAAAAT 58.293 41.667 0.00 0.00 0.00 1.82
2908 5716 5.126699 AGATACTCCCTCCGTCTAGAAAA 57.873 43.478 0.00 0.00 0.00 2.29
2909 5717 4.165565 TGAGATACTCCCTCCGTCTAGAAA 59.834 45.833 0.00 0.00 0.00 2.52
2910 5718 3.715315 TGAGATACTCCCTCCGTCTAGAA 59.285 47.826 0.00 0.00 0.00 2.10
2911 5719 3.315596 TGAGATACTCCCTCCGTCTAGA 58.684 50.000 0.00 0.00 0.00 2.43
2912 5720 3.773418 TGAGATACTCCCTCCGTCTAG 57.227 52.381 0.00 0.00 0.00 2.43
2913 5721 4.104261 TCAATGAGATACTCCCTCCGTCTA 59.896 45.833 0.00 0.00 0.00 2.59
2914 5722 3.117474 TCAATGAGATACTCCCTCCGTCT 60.117 47.826 0.00 0.00 0.00 4.18
2915 5723 3.223435 TCAATGAGATACTCCCTCCGTC 58.777 50.000 0.00 0.00 0.00 4.79
2916 5724 3.314307 TCAATGAGATACTCCCTCCGT 57.686 47.619 0.00 0.00 0.00 4.69
2917 5725 3.829026 TCATCAATGAGATACTCCCTCCG 59.171 47.826 0.00 0.00 34.43 4.63
2918 5726 4.590647 TGTCATCAATGAGATACTCCCTCC 59.409 45.833 0.00 0.00 37.51 4.30
2919 5727 5.798125 TGTCATCAATGAGATACTCCCTC 57.202 43.478 0.00 0.00 37.51 4.30
2920 5728 6.566079 TTTGTCATCAATGAGATACTCCCT 57.434 37.500 0.00 0.00 37.51 4.20
2921 5729 7.284034 ACAATTTGTCATCAATGAGATACTCCC 59.716 37.037 0.00 0.00 37.51 4.30
2922 5730 8.127327 CACAATTTGTCATCAATGAGATACTCC 58.873 37.037 0.00 0.00 37.51 3.85
2923 5731 8.671921 ACACAATTTGTCATCAATGAGATACTC 58.328 33.333 0.00 0.00 37.51 2.59
2924 5732 8.571461 ACACAATTTGTCATCAATGAGATACT 57.429 30.769 0.00 0.00 37.51 2.12
3222 6030 2.158885 GCCACTCTGAGAAGGATAACCC 60.159 54.545 19.82 3.01 36.73 4.11
3284 6092 6.089417 CAGAACCACAAAAGTGAGAACAAAAC 59.911 38.462 0.00 0.00 0.00 2.43
3307 6115 8.573035 AGAGAGAACTGTAAGAAGAGTAAACAG 58.427 37.037 0.00 0.00 42.53 3.16
3360 6168 3.748568 GTGTCAATGTCCTTCCTCTGAAC 59.251 47.826 0.00 0.00 0.00 3.18
3488 6296 8.584157 CCTATTCTCACTTCTCTACAGCAATAT 58.416 37.037 0.00 0.00 0.00 1.28
3489 6297 7.561722 ACCTATTCTCACTTCTCTACAGCAATA 59.438 37.037 0.00 0.00 0.00 1.90
3533 6341 2.596346 ACTGCCATCACAAATCCAACA 58.404 42.857 0.00 0.00 0.00 3.33
3608 6416 4.853196 CGACTCAAAAACCTTGTATGCATG 59.147 41.667 10.16 0.00 0.00 4.06
3609 6417 4.615912 GCGACTCAAAAACCTTGTATGCAT 60.616 41.667 3.79 3.79 0.00 3.96
3610 6418 3.304391 GCGACTCAAAAACCTTGTATGCA 60.304 43.478 0.00 0.00 0.00 3.96
3611 6419 3.234386 GCGACTCAAAAACCTTGTATGC 58.766 45.455 0.00 0.00 0.00 3.14
3612 6420 3.502211 AGGCGACTCAAAAACCTTGTATG 59.498 43.478 0.00 0.00 32.90 2.39
3613 6421 3.751518 AGGCGACTCAAAAACCTTGTAT 58.248 40.909 0.00 0.00 32.90 2.29
3614 6422 3.202829 AGGCGACTCAAAAACCTTGTA 57.797 42.857 0.00 0.00 32.90 2.41
3644 6452 1.675641 GTCGGAGGCATGGCAACTT 60.676 57.895 22.64 0.00 37.61 2.66
3648 6456 1.685765 ACTAGTCGGAGGCATGGCA 60.686 57.895 22.64 0.00 0.00 4.92
4386 7255 9.717942 AGATCCATAGCAGAATAATCTTGTAAC 57.282 33.333 0.00 0.00 32.03 2.50
4445 7314 7.971722 TCATCACTTGATTTTCAGCATATTGTG 59.028 33.333 0.00 0.00 31.21 3.33
4449 7318 7.121611 TGTGTCATCACTTGATTTTCAGCATAT 59.878 33.333 0.00 0.00 44.14 1.78
4495 7364 4.868268 AGACTGTAACCACCTATCTGCTA 58.132 43.478 0.00 0.00 0.00 3.49
4522 7394 8.677300 ACTAACATCGTTTGATTTTCAGCATAT 58.323 29.630 0.00 0.00 30.49 1.78
4539 7411 5.276868 GCTGCCTTACAACATACTAACATCG 60.277 44.000 0.00 0.00 0.00 3.84
4549 7421 5.307976 TCTCCTATATGCTGCCTTACAACAT 59.692 40.000 0.00 0.00 38.59 2.71
4551 7423 5.011125 TCTCTCCTATATGCTGCCTTACAAC 59.989 44.000 0.00 0.00 0.00 3.32
4647 7961 7.175293 TGGTTTGCGGTATTTAAGTTATTGAGT 59.825 33.333 0.00 0.00 0.00 3.41
4651 7965 6.152154 AGCTGGTTTGCGGTATTTAAGTTATT 59.848 34.615 0.00 0.00 38.13 1.40
4666 9553 0.538287 AGGTCTGGAAGCTGGTTTGC 60.538 55.000 0.00 0.00 33.44 3.68
4671 9558 1.202806 TGAACAAGGTCTGGAAGCTGG 60.203 52.381 0.00 0.00 35.40 4.85
4686 9573 6.490721 ACGTAATTTCCTTTAATGGGTGAACA 59.509 34.615 7.50 0.00 0.00 3.18
4691 9578 5.572252 TGGACGTAATTTCCTTTAATGGGT 58.428 37.500 7.50 0.00 33.84 4.51
4715 9602 6.554334 TGATCACTAAAGTAAAGTGTTGGC 57.446 37.500 0.00 0.00 43.88 4.52
4725 9612 7.399191 AGGTGTCCTATGTTGATCACTAAAGTA 59.601 37.037 0.00 0.00 28.47 2.24
4731 9618 4.532126 TGAAGGTGTCCTATGTTGATCACT 59.468 41.667 0.00 0.00 31.13 3.41
4753 9640 7.348201 CGTAAAATCTAAGAGCCTGCTTTATG 58.652 38.462 0.00 0.00 0.00 1.90
4778 9665 2.549754 CCACATGACTGAGTTCACAACC 59.450 50.000 0.00 0.00 0.00 3.77
4858 9745 2.818130 TTGCAAAGGCCAAAGCTTAG 57.182 45.000 5.01 0.00 40.13 2.18
4880 9767 9.053840 AGAACAACATCTAGCAAGATCATTATG 57.946 33.333 0.00 0.00 40.65 1.90
5120 10008 5.105752 TGTAACCAAGCATGAAAACAACAC 58.894 37.500 0.00 0.00 0.00 3.32
5207 10096 7.612633 AGTCCAAAGGAGTAAAAACAAACTGTA 59.387 33.333 0.00 0.00 32.96 2.74
5474 10371 1.786937 ATGGGTTGTTTGACCTGCAA 58.213 45.000 0.00 0.00 39.71 4.08
5533 10431 2.105006 ACAGCATCCTCATGTGTGAC 57.895 50.000 0.00 0.00 31.86 3.67
5604 10502 4.225042 TCCAGGTATCCATATGCATACCAC 59.775 45.833 29.51 10.63 45.01 4.16
5681 10579 2.900546 CAGAACTCTGTACTTCTGGGGT 59.099 50.000 12.53 0.00 39.77 4.95
5757 10655 7.920151 TCGCAGGAAAATGTTATAATGAATTGG 59.080 33.333 0.00 0.00 0.00 3.16
5771 10670 8.344831 TGATAGAACAATATTCGCAGGAAAATG 58.655 33.333 0.00 0.00 35.40 2.32
5809 10708 7.205297 ACAACATAATGTATCCCTACACGTAC 58.795 38.462 0.00 0.00 40.57 3.67
5905 10804 8.096414 AGGTTCCAAAATTGAAGATACAAATGG 58.904 33.333 0.00 0.00 35.45 3.16
5916 10815 5.365025 TCATGAACCAGGTTCCAAAATTGAA 59.635 36.000 26.79 7.67 41.35 2.69
5917 10816 4.898265 TCATGAACCAGGTTCCAAAATTGA 59.102 37.500 26.79 16.68 41.35 2.57
5918 10817 5.212532 TCATGAACCAGGTTCCAAAATTG 57.787 39.130 26.79 15.02 41.35 2.32
5919 10818 5.307716 ACATCATGAACCAGGTTCCAAAATT 59.692 36.000 26.79 7.21 41.35 1.82
5920 10819 4.840115 ACATCATGAACCAGGTTCCAAAAT 59.160 37.500 26.79 12.62 41.35 1.82
5921 10820 4.222336 ACATCATGAACCAGGTTCCAAAA 58.778 39.130 26.79 10.86 41.35 2.44
5922 10821 3.843422 ACATCATGAACCAGGTTCCAAA 58.157 40.909 26.79 13.63 41.35 3.28
5929 10828 4.578871 TGTAGTCAACATCATGAACCAGG 58.421 43.478 0.00 0.00 31.43 4.45
6083 10985 9.999660 TTTGAAATGATCTTCAATCCATCAAAA 57.000 25.926 10.06 0.00 43.12 2.44
6132 11037 1.467920 GCTTCTTCAGGTGGAATGGG 58.532 55.000 0.00 0.00 34.32 4.00
6337 11271 3.153919 GGTTGAGCCAACAAGATTACCA 58.846 45.455 16.55 0.00 45.11 3.25
6367 11301 7.987750 TTGGTAGCAACAGTCATAATAACAA 57.012 32.000 2.54 0.00 0.00 2.83
6435 11370 6.680810 CACAATGCACATCTTCTAAGGAAAA 58.319 36.000 0.00 0.00 0.00 2.29
6515 11453 9.585099 CAATCCTCCGAAATTTTCATTCAATAA 57.415 29.630 9.66 0.00 0.00 1.40
6517 11455 6.536224 GCAATCCTCCGAAATTTTCATTCAAT 59.464 34.615 9.66 0.00 0.00 2.57
6518 11456 5.868801 GCAATCCTCCGAAATTTTCATTCAA 59.131 36.000 9.66 0.00 0.00 2.69
6595 11534 9.866655 ATATAGGAAATATTTGCTGAACCTTGA 57.133 29.630 26.97 9.22 39.29 3.02
6599 11538 8.579863 AGCAATATAGGAAATATTTGCTGAACC 58.420 33.333 26.97 11.80 41.46 3.62
6603 11542 7.868922 TGCAAGCAATATAGGAAATATTTGCTG 59.131 33.333 26.97 14.69 41.78 4.41
6619 11558 1.473677 GTCATGGCACTGCAAGCAATA 59.526 47.619 12.27 0.00 37.60 1.90
6642 11581 5.701750 TGCTATGCTAAACTTCGGTTTTGTA 59.298 36.000 0.00 0.00 44.73 2.41
6643 11582 4.517453 TGCTATGCTAAACTTCGGTTTTGT 59.483 37.500 0.00 0.00 44.73 2.83
6677 11616 3.301515 GCGTTGTTGCATTTGTTGTGTAC 60.302 43.478 0.00 0.00 34.15 2.90
6687 11626 6.794374 TCTGATATTATTGCGTTGTTGCATT 58.206 32.000 0.00 0.00 45.78 3.56
6716 11655 7.123697 ACTTTGGAAAGTATGGTTTATTAGGGC 59.876 37.037 2.86 0.00 46.75 5.19
6732 11671 4.567959 CCTTTGCTTGACAACTTTGGAAAG 59.432 41.667 10.38 10.38 38.23 2.62
6738 11677 2.168313 CACCCCTTTGCTTGACAACTTT 59.832 45.455 0.00 0.00 38.23 2.66
6740 11679 1.402787 CACCCCTTTGCTTGACAACT 58.597 50.000 0.00 0.00 38.23 3.16
6741 11680 0.389025 CCACCCCTTTGCTTGACAAC 59.611 55.000 0.00 0.00 38.23 3.32
6743 11682 1.152567 CCCACCCCTTTGCTTGACA 60.153 57.895 0.00 0.00 0.00 3.58
6744 11683 1.908299 CCCCACCCCTTTGCTTGAC 60.908 63.158 0.00 0.00 0.00 3.18
6745 11684 2.399607 ACCCCACCCCTTTGCTTGA 61.400 57.895 0.00 0.00 0.00 3.02
6746 11685 2.201210 ACCCCACCCCTTTGCTTG 59.799 61.111 0.00 0.00 0.00 4.01
6783 11722 7.406031 TCCAGAATAGAATACTTCGACTGTT 57.594 36.000 0.00 0.00 34.02 3.16
6786 11725 6.711194 TCGATCCAGAATAGAATACTTCGACT 59.289 38.462 0.00 0.00 34.02 4.18
6790 11729 9.567848 GAAGATCGATCCAGAATAGAATACTTC 57.432 37.037 21.66 9.65 0.00 3.01
6795 11734 9.050601 GTTTTGAAGATCGATCCAGAATAGAAT 57.949 33.333 21.66 0.00 0.00 2.40
6796 11735 7.495934 GGTTTTGAAGATCGATCCAGAATAGAA 59.504 37.037 21.66 4.66 0.00 2.10
6797 11736 6.986817 GGTTTTGAAGATCGATCCAGAATAGA 59.013 38.462 21.66 0.00 0.00 1.98
6798 11737 6.989169 AGGTTTTGAAGATCGATCCAGAATAG 59.011 38.462 21.66 0.00 0.00 1.73
6804 11743 5.932619 TCTAGGTTTTGAAGATCGATCCA 57.067 39.130 21.66 10.83 0.00 3.41
6848 11790 9.708222 CTTTATGTGATTACTTGTGTATGCTTC 57.292 33.333 0.00 0.00 0.00 3.86
6882 11825 4.654389 TGCCTAGATAGGGTAGGTAGAC 57.346 50.000 7.99 0.00 43.82 2.59
6918 11861 6.590677 GTCCTCTGTCCAGTAGTATTTTGTTC 59.409 42.308 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.