Multiple sequence alignment - TraesCS2B01G198500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G198500 chr2B 100.000 6692 0 0 1 6692 176173676 176166985 0.000000e+00 12358.0
1 TraesCS2B01G198500 chr2B 97.183 71 2 0 4675 4745 176168929 176168859 3.280000e-23 121.0
2 TraesCS2B01G198500 chr2B 97.183 71 2 0 4748 4818 176169002 176168932 3.280000e-23 121.0
3 TraesCS2B01G198500 chr2D 95.345 5628 184 36 601 6163 123218482 123212868 0.000000e+00 8870.0
4 TraesCS2B01G198500 chr2D 93.950 595 35 1 1 595 480442401 480441808 0.000000e+00 898.0
5 TraesCS2B01G198500 chr2D 90.761 184 5 2 6442 6625 123211316 123211145 1.120000e-57 235.0
6 TraesCS2B01G198500 chr2D 84.358 179 11 5 6254 6430 123212475 123212312 6.950000e-35 159.0
7 TraesCS2B01G198500 chr2D 97.183 71 2 0 4748 4818 123214362 123214292 3.280000e-23 121.0
8 TraesCS2B01G198500 chr2D 90.141 71 6 1 6620 6690 123202467 123202398 2.570000e-14 91.6
9 TraesCS2B01G198500 chr2D 100.000 28 0 0 6206 6233 123212500 123212473 1.200000e-02 52.8
10 TraesCS2B01G198500 chr2A 96.000 3300 92 18 2733 6016 128254616 128251341 0.000000e+00 5326.0
11 TraesCS2B01G198500 chr2A 93.376 2189 90 21 596 2734 128257040 128254857 0.000000e+00 3188.0
12 TraesCS2B01G198500 chr2A 97.183 71 2 0 4675 4745 128252616 128252546 3.280000e-23 121.0
13 TraesCS2B01G198500 chr2A 97.183 71 2 0 4748 4818 128252689 128252619 3.280000e-23 121.0
14 TraesCS2B01G198500 chr5A 88.087 596 69 1 1 596 358052879 358053472 0.000000e+00 706.0
15 TraesCS2B01G198500 chr5A 88.235 102 12 0 5527 5628 649852880 649852779 9.110000e-24 122.0
16 TraesCS2B01G198500 chr3A 87.772 597 73 0 1 597 395574965 395575561 0.000000e+00 699.0
17 TraesCS2B01G198500 chr1A 87.605 597 72 1 1 597 429495755 429496349 0.000000e+00 691.0
18 TraesCS2B01G198500 chr7B 86.622 598 77 2 1 597 13633776 13633181 0.000000e+00 658.0
19 TraesCS2B01G198500 chr5B 85.810 599 81 3 1 597 610660345 610660941 3.410000e-177 632.0
20 TraesCS2B01G198500 chrUn 85.595 597 84 2 1 597 83466795 83466201 5.700000e-175 625.0
21 TraesCS2B01G198500 chr1B 85.210 595 87 1 4 598 264991415 264990822 1.600000e-170 610.0
22 TraesCS2B01G198500 chr7A 84.524 588 87 3 10 597 700385018 700385601 4.500000e-161 579.0
23 TraesCS2B01G198500 chr5D 87.255 102 13 0 5527 5628 521521955 521521854 4.240000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G198500 chr2B 176166985 176173676 6691 True 12358.0 12358 100.0000 1 6692 1 chr2B.!!$R1 6691
1 TraesCS2B01G198500 chr2D 123211145 123218482 7337 True 2329.2 8870 92.6160 601 6625 4 chr2D.!!$R4 6024
2 TraesCS2B01G198500 chr2D 480441808 480442401 593 True 898.0 898 93.9500 1 595 1 chr2D.!!$R3 594
3 TraesCS2B01G198500 chr2A 128251341 128257040 5699 True 2189.0 5326 95.9355 596 6016 4 chr2A.!!$R1 5420
4 TraesCS2B01G198500 chr5A 358052879 358053472 593 False 706.0 706 88.0870 1 596 1 chr5A.!!$F1 595
5 TraesCS2B01G198500 chr3A 395574965 395575561 596 False 699.0 699 87.7720 1 597 1 chr3A.!!$F1 596
6 TraesCS2B01G198500 chr1A 429495755 429496349 594 False 691.0 691 87.6050 1 597 1 chr1A.!!$F1 596
7 TraesCS2B01G198500 chr7B 13633181 13633776 595 True 658.0 658 86.6220 1 597 1 chr7B.!!$R1 596
8 TraesCS2B01G198500 chr5B 610660345 610660941 596 False 632.0 632 85.8100 1 597 1 chr5B.!!$F1 596
9 TraesCS2B01G198500 chrUn 83466201 83466795 594 True 625.0 625 85.5950 1 597 1 chrUn.!!$R1 596
10 TraesCS2B01G198500 chr1B 264990822 264991415 593 True 610.0 610 85.2100 4 598 1 chr1B.!!$R1 594
11 TraesCS2B01G198500 chr7A 700385018 700385601 583 False 579.0 579 84.5240 10 597 1 chr7A.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.754587 TCATGTGGTTGGCACTGCAA 60.755 50.0 2.82 0.00 0.00 4.08 F
1328 1353 0.799393 GTTCTTCGCTGCTCTTTCCC 59.201 55.0 0.00 0.00 0.00 3.97 F
1913 1972 0.820871 TGGTTTGTTGGGTTCAGCAC 59.179 50.0 0.00 0.00 33.87 4.40 F
2928 3245 0.878416 GGCACCACAAACGCAGAATA 59.122 50.0 0.00 0.00 0.00 1.75 F
3719 4046 0.830444 TGGCCTGACGTACACTTCCT 60.830 55.0 3.32 0.00 0.00 3.36 F
3744 4071 1.317431 TGCAAGATGTCTGCATGCCC 61.317 55.0 16.68 3.55 35.07 5.36 F
5278 5616 0.535335 TGGTAGATGCCAAGGTCGTC 59.465 55.0 0.00 0.00 35.25 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2043 0.321671 TGTAGTCTGCCAGTCCTTGC 59.678 55.000 0.00 0.00 0.00 4.01 R
3036 3353 0.323451 TAGGAGCAAGACGAGCAGGA 60.323 55.000 0.00 0.00 0.00 3.86 R
3356 3674 0.250038 GTTGTGAGTCTCAGGCAGCA 60.250 55.000 1.75 0.00 0.00 4.41 R
4424 4752 1.615883 AGCACGATACTGGCAGGATAG 59.384 52.381 20.34 18.64 0.00 2.08 R
4934 5271 2.499197 TGCTTTAACCGCAGAATGTCA 58.501 42.857 0.00 0.00 39.31 3.58 R
5304 5642 2.835764 AGACGACCATAGGGCAAACTAA 59.164 45.455 0.00 0.00 37.90 2.24 R
6155 6503 0.037326 CGGCAGCCTGACTCAGTAAA 60.037 55.000 10.54 0.00 0.00 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.754587 TCATGTGGTTGGCACTGCAA 60.755 50.000 2.82 0.00 0.00 4.08
95 96 1.593006 GGATTACAGGACGCAACATCG 59.407 52.381 0.00 0.00 0.00 3.84
186 187 3.004734 GCAAGTGTGGTTACAATGCTTCT 59.995 43.478 10.42 0.00 43.31 2.85
217 218 3.628032 CAGATTGACATGCAGATGCTTCT 59.372 43.478 6.35 0.00 42.66 2.85
275 276 1.302949 CCAGAAGCGGATCCCCAAA 59.697 57.895 6.06 0.00 0.00 3.28
344 345 5.332743 AGTATTTGGAAGCAAAGGAATGGA 58.667 37.500 0.00 0.00 0.00 3.41
355 356 4.499019 GCAAAGGAATGGACGAGTTTTTGA 60.499 41.667 0.00 0.00 0.00 2.69
449 450 2.037772 AGGAGCAAGGAGTGTACAACAG 59.962 50.000 0.00 0.00 0.00 3.16
537 539 3.587061 TGAGGGCCAGAACAATCTTCTTA 59.413 43.478 6.18 0.00 32.03 2.10
649 651 5.719173 CAGACAAAGGAACAAAAAGTCCAA 58.281 37.500 0.00 0.00 0.00 3.53
881 887 5.304614 GCCCCTCTTTCCTCTTTTTAAAACT 59.695 40.000 0.00 0.00 0.00 2.66
927 933 5.503498 CCGAAGACGTCAAAATAAAACACA 58.497 37.500 19.50 0.00 37.88 3.72
936 942 6.689241 CGTCAAAATAAAACACAAGCACAGTA 59.311 34.615 0.00 0.00 0.00 2.74
1186 1198 1.889454 TGCCGTTGCATGGGATTTC 59.111 52.632 7.68 0.00 44.23 2.17
1196 1208 2.094675 CATGGGATTTCTCGCCTTGTT 58.905 47.619 0.00 0.00 33.54 2.83
1198 1210 2.593026 TGGGATTTCTCGCCTTGTTTT 58.407 42.857 0.00 0.00 33.54 2.43
1199 1211 2.962421 TGGGATTTCTCGCCTTGTTTTT 59.038 40.909 0.00 0.00 33.54 1.94
1223 1246 2.551459 CTCCTGACTGTTTCTGCCTTTG 59.449 50.000 0.00 0.00 0.00 2.77
1246 1269 2.068915 TGCTGCAGATGTGGAGGAA 58.931 52.632 20.43 0.00 39.58 3.36
1327 1352 1.462670 CTGTTCTTCGCTGCTCTTTCC 59.537 52.381 0.00 0.00 0.00 3.13
1328 1353 0.799393 GTTCTTCGCTGCTCTTTCCC 59.201 55.000 0.00 0.00 0.00 3.97
1374 1399 8.593679 TCCTTCCATAATCTCGCAGATAATTAA 58.406 33.333 0.00 0.00 32.89 1.40
1408 1435 8.995027 TCGTAATTACTACTACCAATTAGGGA 57.005 34.615 13.56 0.00 43.89 4.20
1458 1488 6.949352 AATAATCGATGTGCCTTTTCATCT 57.051 33.333 0.00 0.00 38.47 2.90
1494 1524 7.094592 TGACTGAGTGTTACTCTGAATACTGAG 60.095 40.741 18.62 4.21 45.27 3.35
1593 1632 6.536731 AAGAACTCGCAATAGAATATGCAG 57.463 37.500 0.00 0.00 42.68 4.41
1642 1685 2.755103 CAGAGGGCCTTAATTGTTGGAC 59.245 50.000 7.89 0.00 0.00 4.02
1686 1729 1.385756 GGAGACTCTGACGTAGGCCC 61.386 65.000 0.00 0.00 0.00 5.80
1689 1732 1.946475 GACTCTGACGTAGGCCCCAC 61.946 65.000 0.00 0.00 0.00 4.61
1754 1797 2.765807 GCCCTGCTGCCCTAGAGA 60.766 66.667 0.00 0.00 0.00 3.10
1913 1972 0.820871 TGGTTTGTTGGGTTCAGCAC 59.179 50.000 0.00 0.00 33.87 4.40
1964 2023 6.016777 GTGTGATTCTTCTGCCCTAATAATGG 60.017 42.308 0.00 0.00 0.00 3.16
1984 2043 3.316029 TGGTTGATGCAGTTCTTGACTTG 59.684 43.478 0.00 0.00 36.10 3.16
2020 2079 6.773200 CAGACTACAATGATAGGAGTAGGACA 59.227 42.308 0.00 0.00 38.54 4.02
2037 2096 1.271656 GACATGCCTTTCTTTGCTGCT 59.728 47.619 0.00 0.00 0.00 4.24
2126 2186 2.239654 CAGTGTATTGGTGGTGGAGGAT 59.760 50.000 0.00 0.00 0.00 3.24
2265 2325 2.736400 GCCATTGCAGCTTGTAACCATC 60.736 50.000 0.00 0.00 37.47 3.51
2385 2445 5.934043 TGAATGGGCTTATGTAGATTCATCG 59.066 40.000 0.00 0.00 0.00 3.84
2442 2502 8.925161 TTTAAATGCTGGTTAGTGCAATTATC 57.075 30.769 0.00 0.00 42.74 1.75
2550 2612 5.579753 ATGTCTATTCTCCTGCAATGGAT 57.420 39.130 0.00 0.00 35.30 3.41
2647 2712 8.682936 AGTATTATCTTGATCAAATGGTGTCC 57.317 34.615 9.88 0.00 0.00 4.02
2805 3113 1.271102 TGTCATTGTCACGACCGATGA 59.729 47.619 8.45 8.45 33.45 2.92
2807 3115 1.544246 TCATTGTCACGACCGATGAGT 59.456 47.619 8.45 0.00 32.67 3.41
2836 3144 1.933853 CATTCCTGCTAGCGGTTGTAC 59.066 52.381 21.93 0.00 0.00 2.90
2837 3145 0.970640 TTCCTGCTAGCGGTTGTACA 59.029 50.000 21.93 0.00 0.00 2.90
2900 3211 5.207768 CGCAATAATAATGAGGTTGCTGTC 58.792 41.667 6.79 0.00 42.09 3.51
2905 3216 9.294030 CAATAATAATGAGGTTGCTGTCTTTTC 57.706 33.333 0.00 0.00 0.00 2.29
2924 3241 1.299316 CTTGGCACCACAAACGCAG 60.299 57.895 0.00 0.00 0.00 5.18
2925 3242 1.723608 CTTGGCACCACAAACGCAGA 61.724 55.000 0.00 0.00 0.00 4.26
2926 3243 1.315981 TTGGCACCACAAACGCAGAA 61.316 50.000 0.00 0.00 0.00 3.02
2927 3244 1.106351 TGGCACCACAAACGCAGAAT 61.106 50.000 0.00 0.00 0.00 2.40
2928 3245 0.878416 GGCACCACAAACGCAGAATA 59.122 50.000 0.00 0.00 0.00 1.75
2929 3246 1.268352 GGCACCACAAACGCAGAATAA 59.732 47.619 0.00 0.00 0.00 1.40
3036 3353 3.814504 AAACTTCCACCAGATCCATGT 57.185 42.857 0.00 0.00 0.00 3.21
3065 3382 3.358118 GTCTTGCTCCTAGTGAGGTACT 58.642 50.000 9.44 0.00 44.19 2.73
3077 3394 1.784387 AGGTACTCAGGAGGCCAGT 59.216 57.895 5.01 0.74 32.48 4.00
3135 3452 4.095782 GGTAGATCAGGATCGAGCTGATAC 59.904 50.000 13.19 9.89 42.48 2.24
3153 3470 2.916703 GTGGTGCCATGGTTGCCA 60.917 61.111 14.67 15.79 38.19 4.92
3184 3501 2.857152 CGTGAGCTGCTCATTAGAAGTC 59.143 50.000 32.45 17.10 42.73 3.01
3287 3604 3.764237 AAGAACACGGGACACTACAAT 57.236 42.857 0.00 0.00 0.00 2.71
3356 3674 2.159382 CGTAACAGCCATCCCAAACTT 58.841 47.619 0.00 0.00 0.00 2.66
3411 3729 8.630278 AGTATGTGTTGTAGCTTATCTAAACG 57.370 34.615 0.00 0.00 0.00 3.60
3498 3823 1.004745 AGCAACACCCATGGACTTAGG 59.995 52.381 15.22 0.00 0.00 2.69
3658 3985 3.887352 TGTCGGATCTGTAGTCTAGCTT 58.113 45.455 0.42 0.00 0.00 3.74
3670 3997 6.106673 TGTAGTCTAGCTTGCCAAAATAGAC 58.893 40.000 15.78 15.78 41.62 2.59
3671 3998 5.428184 AGTCTAGCTTGCCAAAATAGACT 57.572 39.130 18.60 18.60 44.82 3.24
3684 4011 5.220548 CCAAAATAGACTGTGAGATTCAGCG 60.221 44.000 0.00 0.00 36.50 5.18
3719 4046 0.830444 TGGCCTGACGTACACTTCCT 60.830 55.000 3.32 0.00 0.00 3.36
3744 4071 1.317431 TGCAAGATGTCTGCATGCCC 61.317 55.000 16.68 3.55 35.07 5.36
3839 4166 2.218603 CTAGTGCCAAAACGTCACCTT 58.781 47.619 0.00 0.00 0.00 3.50
3963 4290 7.814107 TGTGTCTTTCCTTCATTTCAAATATGC 59.186 33.333 0.00 0.00 0.00 3.14
3997 4324 5.067674 TCAACTTATGTGCAAACTCAAGCTT 59.932 36.000 0.00 0.00 0.00 3.74
4458 4786 1.867233 TCGTGCTGTGCTTTCTTTCTC 59.133 47.619 0.00 0.00 0.00 2.87
4934 5271 6.043590 TGCTTGGTATACAGAAGATGATCCAT 59.956 38.462 14.89 0.00 0.00 3.41
4935 5272 6.370994 GCTTGGTATACAGAAGATGATCCATG 59.629 42.308 14.89 0.00 0.00 3.66
5006 5343 5.178252 TCTGAGATTCTTGCTGTTTCTTTCG 59.822 40.000 0.00 0.00 0.00 3.46
5186 5524 7.222000 TCCAAGTCCAACAATAAAATGGTAC 57.778 36.000 0.00 0.00 35.66 3.34
5278 5616 0.535335 TGGTAGATGCCAAGGTCGTC 59.465 55.000 0.00 0.00 35.25 4.20
5285 5623 1.334160 TGCCAAGGTCGTCTACTGAA 58.666 50.000 0.00 0.00 0.00 3.02
5304 5642 7.849804 ACTGAAGTTTATTGCGTCTGAATAT 57.150 32.000 0.00 0.00 0.00 1.28
5409 5747 2.438763 CCAGCTGAAGGAGGAAGATCAT 59.561 50.000 17.39 0.00 0.00 2.45
5697 6035 2.758737 CCGTCCTCCTAAGGCCGT 60.759 66.667 0.00 0.00 42.47 5.68
5701 6039 4.570663 CCTCCTAAGGCCGTCGCG 62.571 72.222 0.00 0.00 35.37 5.87
5777 6116 3.980646 ATTGCAGTCGCTGTAACAAAA 57.019 38.095 11.19 0.00 38.72 2.44
5875 6215 7.820532 AGGATTCTTCTTATTTTAGCTGGGAT 58.179 34.615 0.00 0.00 0.00 3.85
6023 6363 3.251571 GTCTTGCCGTTCTACTTGTAGG 58.748 50.000 7.81 0.00 0.00 3.18
6024 6364 2.000447 CTTGCCGTTCTACTTGTAGGC 59.000 52.381 7.81 5.19 44.38 3.93
6025 6365 1.263356 TGCCGTTCTACTTGTAGGCT 58.737 50.000 7.81 0.00 44.42 4.58
6026 6366 1.621814 TGCCGTTCTACTTGTAGGCTT 59.378 47.619 7.81 0.00 44.42 4.35
6027 6367 2.000447 GCCGTTCTACTTGTAGGCTTG 59.000 52.381 7.81 0.00 41.21 4.01
6028 6368 2.612221 GCCGTTCTACTTGTAGGCTTGT 60.612 50.000 7.81 0.00 41.21 3.16
6029 6369 3.367703 GCCGTTCTACTTGTAGGCTTGTA 60.368 47.826 7.81 0.00 41.21 2.41
6030 6370 4.421948 CCGTTCTACTTGTAGGCTTGTAG 58.578 47.826 7.81 1.42 35.15 2.74
6042 6382 1.484240 GGCTTGTAGCAGGAGATCACT 59.516 52.381 0.00 0.00 44.75 3.41
6048 6396 2.428544 AGCAGGAGATCACTACGACT 57.571 50.000 0.00 0.00 31.08 4.18
6054 6402 2.223618 GGAGATCACTACGACTTCAGCC 60.224 54.545 0.00 0.00 0.00 4.85
6067 6415 0.035152 TTCAGCCACCTGTAGCATGG 60.035 55.000 0.00 0.00 40.09 3.66
6082 6430 4.980805 TGGCCTTGTGCGTCCGTC 62.981 66.667 3.32 0.00 42.61 4.79
6155 6503 2.762745 ACTATTTTCTCACGCGTTGGT 58.237 42.857 10.22 0.00 0.00 3.67
6179 6554 3.941657 GAGTCAGGCTGCCGTCACC 62.942 68.421 13.96 0.23 0.00 4.02
6183 6558 1.741770 CAGGCTGCCGTCACCTTAC 60.742 63.158 13.96 0.00 0.00 2.34
6185 6560 1.302192 GGCTGCCGTCACCTTACAA 60.302 57.895 1.35 0.00 0.00 2.41
6186 6561 1.298859 GGCTGCCGTCACCTTACAAG 61.299 60.000 1.35 0.00 0.00 3.16
6188 6563 1.298859 CTGCCGTCACCTTACAAGCC 61.299 60.000 0.00 0.00 0.00 4.35
6189 6564 1.302192 GCCGTCACCTTACAAGCCA 60.302 57.895 0.00 0.00 0.00 4.75
6190 6565 1.574702 GCCGTCACCTTACAAGCCAC 61.575 60.000 0.00 0.00 0.00 5.01
6193 6568 1.542547 CGTCACCTTACAAGCCACCTT 60.543 52.381 0.00 0.00 0.00 3.50
6250 6923 4.717629 CAGGAGCCGACGCGTGAA 62.718 66.667 20.70 0.00 41.18 3.18
6251 6924 4.719369 AGGAGCCGACGCGTGAAC 62.719 66.667 20.70 4.94 41.18 3.18
6262 6935 4.760047 CGTGAACGCCCCAGGAGG 62.760 72.222 0.00 0.00 0.00 4.30
6294 6967 3.474806 CCGTGTCATTCTCGGCAC 58.525 61.111 0.00 0.00 44.23 5.01
6328 7001 4.704833 GAGCGCTGGGGAACTGCA 62.705 66.667 18.48 0.00 43.49 4.41
6333 7006 2.594303 CTGGGGAACTGCACGCAA 60.594 61.111 0.00 0.00 0.00 4.85
6335 7008 4.043200 GGGGAACTGCACGCAAGC 62.043 66.667 0.00 0.00 45.62 4.01
6336 7009 4.043200 GGGAACTGCACGCAAGCC 62.043 66.667 0.00 0.00 45.62 4.35
6337 7010 2.980233 GGAACTGCACGCAAGCCT 60.980 61.111 0.00 0.00 45.62 4.58
6338 7011 2.253452 GAACTGCACGCAAGCCTG 59.747 61.111 0.00 0.00 45.62 4.85
6339 7012 2.203195 AACTGCACGCAAGCCTGA 60.203 55.556 0.00 0.00 45.62 3.86
6340 7013 2.180131 GAACTGCACGCAAGCCTGAG 62.180 60.000 0.00 0.00 45.62 3.35
6419 7094 6.353602 GGTTTTTATTGAGATAGGTCAGGGGA 60.354 42.308 0.00 0.00 0.00 4.81
6421 7096 6.500589 TTTATTGAGATAGGTCAGGGGAAG 57.499 41.667 0.00 0.00 0.00 3.46
6430 7105 0.103937 GTCAGGGGAAGCATCTCTCG 59.896 60.000 0.00 0.00 0.00 4.04
6431 7106 1.045350 TCAGGGGAAGCATCTCTCGG 61.045 60.000 0.00 0.00 0.00 4.63
6432 7107 1.045350 CAGGGGAAGCATCTCTCGGA 61.045 60.000 0.00 0.00 0.00 4.55
6433 7108 0.325671 AGGGGAAGCATCTCTCGGAA 60.326 55.000 0.00 0.00 0.00 4.30
6434 7109 0.105778 GGGGAAGCATCTCTCGGAAG 59.894 60.000 0.00 0.00 0.00 3.46
6435 7110 1.115467 GGGAAGCATCTCTCGGAAGA 58.885 55.000 0.00 0.00 39.12 2.87
6513 8172 6.418819 CCTTAACAATGTTGAAGTCAAGCAAG 59.581 38.462 9.15 0.36 36.39 4.01
6524 8183 6.551736 TGAAGTCAAGCAAGTAACTTGTTTC 58.448 36.000 0.00 11.09 41.55 2.78
6525 8184 6.150307 TGAAGTCAAGCAAGTAACTTGTTTCA 59.850 34.615 15.36 15.36 41.55 2.69
6526 8185 6.509418 AGTCAAGCAAGTAACTTGTTTCAA 57.491 33.333 0.00 0.00 41.55 2.69
6589 8248 5.996669 AAAGGACACAACTTAGTTTACCG 57.003 39.130 0.00 0.00 0.00 4.02
6590 8249 3.999046 AGGACACAACTTAGTTTACCGG 58.001 45.455 0.00 0.00 0.00 5.28
6591 8250 3.389002 AGGACACAACTTAGTTTACCGGT 59.611 43.478 13.98 13.98 0.00 5.28
6592 8251 4.129380 GGACACAACTTAGTTTACCGGTT 58.871 43.478 15.04 0.00 0.00 4.44
6593 8252 4.212004 GGACACAACTTAGTTTACCGGTTC 59.788 45.833 15.04 3.96 0.00 3.62
6594 8253 5.027293 ACACAACTTAGTTTACCGGTTCT 57.973 39.130 15.04 12.08 0.00 3.01
6595 8254 6.160576 ACACAACTTAGTTTACCGGTTCTA 57.839 37.500 15.04 11.00 0.00 2.10
6596 8255 6.581712 ACACAACTTAGTTTACCGGTTCTAA 58.418 36.000 15.04 17.54 0.00 2.10
6597 8256 7.047271 ACACAACTTAGTTTACCGGTTCTAAA 58.953 34.615 15.04 4.26 0.00 1.85
6625 8284 8.819303 AAGAGGTCTTAAAATCAGCAACAAGCA 61.819 37.037 0.00 0.00 39.19 3.91
6637 8296 4.596801 GCAACAAGCAACAAACATTTCA 57.403 36.364 0.00 0.00 44.79 2.69
6638 8297 5.159399 GCAACAAGCAACAAACATTTCAT 57.841 34.783 0.00 0.00 44.79 2.57
6639 8298 4.965158 GCAACAAGCAACAAACATTTCATG 59.035 37.500 0.00 0.00 44.79 3.07
6640 8299 5.447548 GCAACAAGCAACAAACATTTCATGT 60.448 36.000 0.00 0.00 44.43 3.21
6641 8300 5.721876 ACAAGCAACAAACATTTCATGTG 57.278 34.783 0.00 0.00 44.07 3.21
6642 8301 5.417811 ACAAGCAACAAACATTTCATGTGA 58.582 33.333 0.00 0.00 44.07 3.58
6643 8302 5.291614 ACAAGCAACAAACATTTCATGTGAC 59.708 36.000 0.00 0.00 44.07 3.67
6644 8303 4.370917 AGCAACAAACATTTCATGTGACC 58.629 39.130 0.00 0.00 44.07 4.02
6645 8304 4.118410 GCAACAAACATTTCATGTGACCA 58.882 39.130 0.00 0.00 44.07 4.02
6646 8305 4.751098 GCAACAAACATTTCATGTGACCAT 59.249 37.500 0.00 0.00 44.07 3.55
6647 8306 5.107375 GCAACAAACATTTCATGTGACCATC 60.107 40.000 0.00 0.00 44.07 3.51
6648 8307 5.138125 ACAAACATTTCATGTGACCATCC 57.862 39.130 0.00 0.00 44.07 3.51
6649 8308 4.834496 ACAAACATTTCATGTGACCATCCT 59.166 37.500 0.00 0.00 44.07 3.24
6650 8309 5.165676 CAAACATTTCATGTGACCATCCTG 58.834 41.667 0.00 0.00 44.07 3.86
6651 8310 4.038271 ACATTTCATGTGACCATCCTGT 57.962 40.909 0.00 0.00 43.01 4.00
6652 8311 4.410099 ACATTTCATGTGACCATCCTGTT 58.590 39.130 0.00 0.00 43.01 3.16
6653 8312 4.834496 ACATTTCATGTGACCATCCTGTTT 59.166 37.500 0.00 0.00 43.01 2.83
6654 8313 6.009589 ACATTTCATGTGACCATCCTGTTTA 58.990 36.000 0.00 0.00 43.01 2.01
6655 8314 6.493115 ACATTTCATGTGACCATCCTGTTTAA 59.507 34.615 0.00 0.00 43.01 1.52
6656 8315 6.968263 TTTCATGTGACCATCCTGTTTAAA 57.032 33.333 0.00 0.00 0.00 1.52
6657 8316 6.573664 TTCATGTGACCATCCTGTTTAAAG 57.426 37.500 0.00 0.00 0.00 1.85
6658 8317 5.630121 TCATGTGACCATCCTGTTTAAAGT 58.370 37.500 0.00 0.00 0.00 2.66
6659 8318 6.774673 TCATGTGACCATCCTGTTTAAAGTA 58.225 36.000 0.00 0.00 0.00 2.24
6660 8319 7.227873 TCATGTGACCATCCTGTTTAAAGTAA 58.772 34.615 0.00 0.00 0.00 2.24
6661 8320 7.721842 TCATGTGACCATCCTGTTTAAAGTAAA 59.278 33.333 0.00 0.00 0.00 2.01
6662 8321 7.883391 TGTGACCATCCTGTTTAAAGTAAAA 57.117 32.000 0.00 0.00 0.00 1.52
6663 8322 8.294954 TGTGACCATCCTGTTTAAAGTAAAAA 57.705 30.769 0.00 0.00 0.00 1.94
6664 8323 8.919145 TGTGACCATCCTGTTTAAAGTAAAAAT 58.081 29.630 0.00 0.00 0.00 1.82
6665 8324 9.191995 GTGACCATCCTGTTTAAAGTAAAAATG 57.808 33.333 0.00 0.00 0.00 2.32
6666 8325 9.137459 TGACCATCCTGTTTAAAGTAAAAATGA 57.863 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.317479 CGGAGGTCCAAAGTCTTCGT 59.683 55.000 0.00 0.00 35.14 3.85
95 96 4.338118 TCTTGATCACAAAGGAAACACACC 59.662 41.667 0.00 0.00 35.49 4.16
259 260 0.034089 CCTTTTGGGGATCCGCTTCT 60.034 55.000 27.31 0.00 35.46 2.85
275 276 3.780850 AGTCAAATCCCTTCCGATACCTT 59.219 43.478 0.00 0.00 0.00 3.50
344 345 1.613437 CCTTGGCCATCAAAAACTCGT 59.387 47.619 6.09 0.00 34.56 4.18
355 356 1.414919 CATTGCTTATGCCTTGGCCAT 59.585 47.619 6.09 0.00 38.71 4.40
392 393 4.336993 AGTCGTAGCTCTTGGTAGATCTTG 59.663 45.833 0.00 0.00 29.99 3.02
449 450 5.888105 ACCATACACGACTACTCACATAAC 58.112 41.667 0.00 0.00 0.00 1.89
549 551 9.352191 AGAGCGTATCTAAACTTTATAGAAGGA 57.648 33.333 0.00 0.00 36.10 3.36
598 600 2.613506 GGTCAGTTTCCGGTTGCGG 61.614 63.158 0.00 0.00 0.00 5.69
669 672 4.806775 GCACATTTTTACGGTGTCCTTTTT 59.193 37.500 0.00 0.00 35.05 1.94
911 917 5.514914 ACTGTGCTTGTGTTTTATTTTGACG 59.485 36.000 0.00 0.00 0.00 4.35
927 933 0.550147 AGGGGATGGGTACTGTGCTT 60.550 55.000 0.00 0.00 0.00 3.91
1047 1059 4.645131 TTGCGGCGGCCCTTGTAA 62.645 61.111 14.55 2.43 38.85 2.41
1157 1169 1.060308 CAACGGCAGCGTAATTCGG 59.940 57.895 0.00 0.00 40.26 4.30
1178 1190 2.286365 AAACAAGGCGAGAAATCCCA 57.714 45.000 0.00 0.00 0.00 4.37
1198 1210 3.117888 AGGCAGAAACAGTCAGGAGAAAA 60.118 43.478 0.00 0.00 0.00 2.29
1199 1211 2.439507 AGGCAGAAACAGTCAGGAGAAA 59.560 45.455 0.00 0.00 0.00 2.52
1223 1246 1.467734 CTCCACATCTGCAGCAAGAAC 59.532 52.381 9.47 0.00 0.00 3.01
1246 1269 1.376609 GGTCGCATTGCCGGAAGAAT 61.377 55.000 5.05 0.00 0.00 2.40
1382 1407 9.592196 TCCCTAATTGGTAGTAGTAATTACGAT 57.408 33.333 9.91 3.19 37.35 3.73
1383 1408 8.995027 TCCCTAATTGGTAGTAGTAATTACGA 57.005 34.615 9.91 1.93 37.35 3.43
1384 1409 9.635520 CATCCCTAATTGGTAGTAGTAATTACG 57.364 37.037 9.91 0.00 37.35 3.18
1385 1410 9.939802 CCATCCCTAATTGGTAGTAGTAATTAC 57.060 37.037 7.57 7.57 0.00 1.89
1386 1411 9.108111 CCCATCCCTAATTGGTAGTAGTAATTA 57.892 37.037 0.00 0.00 0.00 1.40
1388 1413 7.017254 CACCCATCCCTAATTGGTAGTAGTAAT 59.983 40.741 0.00 0.00 31.67 1.89
1392 1419 4.658901 ACACCCATCCCTAATTGGTAGTAG 59.341 45.833 0.00 0.00 31.67 2.57
1399 1426 4.644685 CCACTAAACACCCATCCCTAATTG 59.355 45.833 0.00 0.00 0.00 2.32
1408 1435 4.724279 AGAAACTCCACTAAACACCCAT 57.276 40.909 0.00 0.00 0.00 4.00
1458 1488 6.288294 AGTAACACTCAGTCAAGCATGTTTA 58.712 36.000 0.00 0.00 32.76 2.01
1593 1632 4.021925 AGAGGGCTTCACGCACCC 62.022 66.667 0.00 0.00 45.64 4.61
1642 1685 3.132289 TCCACAGGAGGCTCGTTATTAAG 59.868 47.826 7.04 0.00 0.00 1.85
1754 1797 5.563592 TGATGAATTCATTGACCACTCAGT 58.436 37.500 21.57 0.00 36.57 3.41
1913 1972 0.693049 AACCAAGCAGGACCCAGTAG 59.307 55.000 1.83 0.00 41.22 2.57
1964 2023 3.243168 TGCAAGTCAAGAACTGCATCAAC 60.243 43.478 3.88 0.00 38.58 3.18
1984 2043 0.321671 TGTAGTCTGCCAGTCCTTGC 59.678 55.000 0.00 0.00 0.00 4.01
2020 2079 1.607251 GCAAGCAGCAAAGAAAGGCAT 60.607 47.619 0.00 0.00 44.79 4.40
2126 2186 5.657826 TTAAAGAATGCAATGCTAGGCAA 57.342 34.783 6.82 0.00 43.62 4.52
2265 2325 2.393271 AAGTTCCTCAGAGCATTCCG 57.607 50.000 0.00 0.00 0.00 4.30
2385 2445 2.106511 TCCAACCCTATAGCATTCTGCC 59.893 50.000 0.00 0.00 46.52 4.85
2420 2480 5.125417 ACGATAATTGCACTAACCAGCATTT 59.875 36.000 0.00 0.00 40.94 2.32
2425 2485 4.271049 CCTCACGATAATTGCACTAACCAG 59.729 45.833 0.00 0.00 0.00 4.00
2442 2502 0.740868 ATGCCGAATGACACCTCACG 60.741 55.000 0.00 0.00 0.00 4.35
2519 2579 7.738847 TGCAGGAGAATAGACATATTGATTCA 58.261 34.615 0.00 0.00 31.57 2.57
2524 2584 6.938596 TCCATTGCAGGAGAATAGACATATTG 59.061 38.462 0.00 0.00 29.96 1.90
2525 2585 7.083062 TCCATTGCAGGAGAATAGACATATT 57.917 36.000 0.00 0.00 31.42 1.28
2527 2587 6.692849 ATCCATTGCAGGAGAATAGACATA 57.307 37.500 0.80 0.00 41.90 2.29
2570 2632 1.830477 AGCACACTGGAAAAAGGCAAA 59.170 42.857 0.00 0.00 0.00 3.68
2571 2633 1.484038 AGCACACTGGAAAAAGGCAA 58.516 45.000 0.00 0.00 0.00 4.52
2572 2634 2.356665 TAGCACACTGGAAAAAGGCA 57.643 45.000 0.00 0.00 0.00 4.75
2573 2635 2.623416 AGTTAGCACACTGGAAAAAGGC 59.377 45.455 0.00 0.00 0.00 4.35
2680 2746 2.997986 GCCCGAAAATACACGAGAAGAA 59.002 45.455 0.00 0.00 0.00 2.52
2805 3113 1.181098 GCAGGAATGTTGGCACCACT 61.181 55.000 0.00 0.00 0.00 4.00
2807 3115 0.403655 TAGCAGGAATGTTGGCACCA 59.596 50.000 0.00 0.00 0.00 4.17
2900 3211 2.549926 GTTTGTGGTGCCAAGGAAAAG 58.450 47.619 0.00 0.00 0.00 2.27
2905 3216 2.027460 GCGTTTGTGGTGCCAAGG 59.973 61.111 0.00 0.00 0.00 3.61
2941 3258 1.727880 GGCACGTAACTTGCAACGATA 59.272 47.619 15.09 0.00 42.12 2.92
2947 3264 2.248135 CGGTGGCACGTAACTTGCA 61.248 57.895 12.17 0.00 42.12 4.08
3036 3353 0.323451 TAGGAGCAAGACGAGCAGGA 60.323 55.000 0.00 0.00 0.00 3.86
3065 3382 1.768684 GACACCAACTGGCCTCCTGA 61.769 60.000 3.32 0.00 39.32 3.86
3077 3394 4.612412 GGCCACCGTCGACACCAA 62.612 66.667 17.16 0.00 0.00 3.67
3184 3501 0.529378 GATGCTGGCCTGAAACCAAG 59.471 55.000 14.77 0.00 36.56 3.61
3287 3604 5.578727 GCACAAAGTTACCACATCACAAAAA 59.421 36.000 0.00 0.00 0.00 1.94
3356 3674 0.250038 GTTGTGAGTCTCAGGCAGCA 60.250 55.000 1.75 0.00 0.00 4.41
3411 3729 4.429108 AGTGTGTGCATTTTGTTTACACC 58.571 39.130 0.00 0.00 40.54 4.16
3498 3823 8.240682 TCATTAAAACATTGTACCTGCATGTAC 58.759 33.333 21.34 21.34 41.18 2.90
3658 3985 5.559770 TGAATCTCACAGTCTATTTTGGCA 58.440 37.500 0.00 0.00 0.00 4.92
3670 3997 1.017701 TGCAGCGCTGAATCTCACAG 61.018 55.000 40.21 10.82 38.27 3.66
3671 3998 0.603439 TTGCAGCGCTGAATCTCACA 60.603 50.000 40.21 23.11 0.00 3.58
3684 4011 1.283736 GCCAGCATACAAATTGCAGC 58.716 50.000 0.00 0.00 42.62 5.25
3719 4046 1.271488 TGCAGACATCTTGCATGGACA 60.271 47.619 0.00 0.00 33.24 4.02
3744 4071 2.100252 CCAAAAGCAGGGCAGACATATG 59.900 50.000 0.00 0.00 0.00 1.78
4087 4415 7.326454 TGTATGGACTCAGAAGAATCTCAAAG 58.674 38.462 0.00 0.00 32.03 2.77
4424 4752 1.615883 AGCACGATACTGGCAGGATAG 59.384 52.381 20.34 18.64 0.00 2.08
4458 4786 2.486472 AGGAACTGCACAGATGGAAG 57.514 50.000 4.31 0.00 37.18 3.46
4523 4852 9.005777 TGCAATTACCTAGTAAATTTCGTTTCT 57.994 29.630 0.00 0.00 31.56 2.52
4594 4923 5.240623 TCATTAGACGTGAGCCAAACAATTT 59.759 36.000 0.00 0.00 0.00 1.82
4934 5271 2.499197 TGCTTTAACCGCAGAATGTCA 58.501 42.857 0.00 0.00 39.31 3.58
4935 5272 3.119849 ACATGCTTTAACCGCAGAATGTC 60.120 43.478 0.00 0.00 41.22 3.06
5006 5343 3.698029 AACAACACATCAGTCAACAGC 57.302 42.857 0.00 0.00 0.00 4.40
5186 5524 3.923017 AATCAAAGGAAAAGTGAGCCG 57.077 42.857 0.00 0.00 0.00 5.52
5278 5616 6.706055 TTCAGACGCAATAAACTTCAGTAG 57.294 37.500 0.00 0.00 0.00 2.57
5285 5623 9.988350 CAAACTAATATTCAGACGCAATAAACT 57.012 29.630 0.00 0.00 0.00 2.66
5304 5642 2.835764 AGACGACCATAGGGCAAACTAA 59.164 45.455 0.00 0.00 37.90 2.24
5409 5747 3.976490 ATCCGGGGCTTCGTCCTCA 62.976 63.158 0.00 0.00 0.00 3.86
5737 6075 5.067936 GCAATAAGAGCTCAGTCCTACTACA 59.932 44.000 17.77 0.00 0.00 2.74
5777 6116 1.600916 GCCTTGACGCCTGGAAACT 60.601 57.895 0.00 0.00 0.00 2.66
5875 6215 7.943079 ACAACAGATATCAAATCCACATTCA 57.057 32.000 5.32 0.00 0.00 2.57
6023 6363 2.977772 AGTGATCTCCTGCTACAAGC 57.022 50.000 0.00 0.00 42.82 4.01
6024 6364 3.628032 TCGTAGTGATCTCCTGCTACAAG 59.372 47.826 0.00 0.00 34.98 3.16
6025 6365 3.377485 GTCGTAGTGATCTCCTGCTACAA 59.623 47.826 0.00 0.00 34.98 2.41
6026 6366 2.943690 GTCGTAGTGATCTCCTGCTACA 59.056 50.000 0.00 0.00 34.98 2.74
6027 6367 3.207778 AGTCGTAGTGATCTCCTGCTAC 58.792 50.000 0.00 0.00 0.00 3.58
6028 6368 3.562343 AGTCGTAGTGATCTCCTGCTA 57.438 47.619 0.00 0.00 0.00 3.49
6029 6369 2.428544 AGTCGTAGTGATCTCCTGCT 57.571 50.000 0.00 0.00 0.00 4.24
6030 6370 2.423892 TGAAGTCGTAGTGATCTCCTGC 59.576 50.000 0.00 0.00 0.00 4.85
6042 6382 1.816835 CTACAGGTGGCTGAAGTCGTA 59.183 52.381 0.00 0.00 0.00 3.43
6048 6396 0.035152 CCATGCTACAGGTGGCTGAA 60.035 55.000 9.20 0.00 37.97 3.02
6054 6402 0.322816 ACAAGGCCATGCTACAGGTG 60.323 55.000 8.15 0.00 0.00 4.00
6155 6503 0.037326 CGGCAGCCTGACTCAGTAAA 60.037 55.000 10.54 0.00 0.00 2.01
6179 6554 1.614317 CCTCCCAAGGTGGCTTGTAAG 60.614 57.143 0.00 0.00 37.94 2.34
6203 6578 4.717629 TTGACGACCTCGCTGCGG 62.718 66.667 23.03 12.57 44.43 5.69
6204 6579 2.720758 CTTTGACGACCTCGCTGCG 61.721 63.158 17.25 17.25 44.43 5.18
6233 6906 4.717629 TTCACGCGTCGGCTCCTG 62.718 66.667 9.86 0.00 36.88 3.86
6245 6918 4.760047 CCTCCTGGGGCGTTCACG 62.760 72.222 0.00 0.00 43.27 4.35
6253 6926 3.747579 ATGCCTTGCCTCCTGGGG 61.748 66.667 0.00 0.00 35.12 4.96
6254 6927 2.441532 CATGCCTTGCCTCCTGGG 60.442 66.667 0.00 0.00 38.36 4.45
6255 6928 2.441532 CCATGCCTTGCCTCCTGG 60.442 66.667 0.00 0.00 0.00 4.45
6256 6929 1.751927 GTCCATGCCTTGCCTCCTG 60.752 63.158 0.00 0.00 0.00 3.86
6257 6930 2.679716 GTCCATGCCTTGCCTCCT 59.320 61.111 0.00 0.00 0.00 3.69
6258 6931 2.825836 CGTCCATGCCTTGCCTCC 60.826 66.667 0.00 0.00 0.00 4.30
6259 6932 2.109126 GTCGTCCATGCCTTGCCTC 61.109 63.158 0.00 0.00 0.00 4.70
6260 6933 2.045926 GTCGTCCATGCCTTGCCT 60.046 61.111 0.00 0.00 0.00 4.75
6261 6934 3.134127 GGTCGTCCATGCCTTGCC 61.134 66.667 0.00 0.00 0.00 4.52
6262 6935 3.499737 CGGTCGTCCATGCCTTGC 61.500 66.667 0.00 0.00 0.00 4.01
6263 6936 2.047274 ACGGTCGTCCATGCCTTG 60.047 61.111 0.00 0.00 0.00 3.61
6264 6937 2.047274 CACGGTCGTCCATGCCTT 60.047 61.111 0.00 0.00 0.00 4.35
6265 6938 3.296709 GACACGGTCGTCCATGCCT 62.297 63.158 0.00 0.00 28.93 4.75
6266 6939 2.813908 GACACGGTCGTCCATGCC 60.814 66.667 0.00 0.00 28.93 4.40
6267 6940 1.019278 AATGACACGGTCGTCCATGC 61.019 55.000 0.00 0.00 34.95 4.06
6317 6990 2.594303 CTTGCGTGCAGTTCCCCA 60.594 61.111 0.00 0.00 0.00 4.96
6319 6992 4.043200 GGCTTGCGTGCAGTTCCC 62.043 66.667 0.00 0.00 34.04 3.97
6321 6994 2.180131 CTCAGGCTTGCGTGCAGTTC 62.180 60.000 10.04 0.00 34.04 3.01
6322 6995 2.203195 TCAGGCTTGCGTGCAGTT 60.203 55.556 10.04 0.00 34.04 3.16
6323 6996 2.667536 CTCAGGCTTGCGTGCAGT 60.668 61.111 10.04 0.00 34.04 4.40
6324 6997 3.429141 CCTCAGGCTTGCGTGCAG 61.429 66.667 10.04 8.45 34.04 4.41
6334 7007 3.741476 CCTTTGTGCGCCTCAGGC 61.741 66.667 5.22 5.22 46.75 4.85
6335 7008 3.058160 CCCTTTGTGCGCCTCAGG 61.058 66.667 4.18 4.89 0.00 3.86
6336 7009 3.741476 GCCCTTTGTGCGCCTCAG 61.741 66.667 4.18 0.00 0.00 3.35
6337 7010 4.577677 TGCCCTTTGTGCGCCTCA 62.578 61.111 4.18 0.67 0.00 3.86
6338 7011 3.741476 CTGCCCTTTGTGCGCCTC 61.741 66.667 4.18 0.00 0.00 4.70
6346 7019 0.453390 GAGGAAATCGCTGCCCTTTG 59.547 55.000 0.00 0.00 0.00 2.77
6381 7056 1.596603 AAAAACCTTGCAATGCTGGC 58.403 45.000 15.29 0.00 0.00 4.85
6430 7105 6.128526 GCAATAGTTATGCGGTTATCTCTTCC 60.129 42.308 0.00 0.00 33.57 3.46
6431 7106 6.822506 GCAATAGTTATGCGGTTATCTCTTC 58.177 40.000 0.00 0.00 33.57 2.87
6432 7107 6.787085 GCAATAGTTATGCGGTTATCTCTT 57.213 37.500 0.00 0.00 33.57 2.85
6555 8214 4.336889 TGTGTCCTTTTGAGTACCTCTG 57.663 45.455 0.00 0.00 0.00 3.35
6577 8236 7.955918 TCTTCTTTAGAACCGGTAAACTAAGT 58.044 34.615 8.00 0.00 0.00 2.24
6589 8248 9.503399 TGATTTTAAGACCTCTTCTTTAGAACC 57.497 33.333 0.00 0.00 42.37 3.62
6591 8250 9.220767 GCTGATTTTAAGACCTCTTCTTTAGAA 57.779 33.333 0.00 0.00 42.37 2.10
6592 8251 8.375506 TGCTGATTTTAAGACCTCTTCTTTAGA 58.624 33.333 0.00 0.00 42.37 2.10
6593 8252 8.553459 TGCTGATTTTAAGACCTCTTCTTTAG 57.447 34.615 0.00 0.00 42.37 1.85
6594 8253 8.784043 GTTGCTGATTTTAAGACCTCTTCTTTA 58.216 33.333 0.00 0.00 42.37 1.85
6595 8254 7.285401 TGTTGCTGATTTTAAGACCTCTTCTTT 59.715 33.333 0.00 0.00 42.37 2.52
6596 8255 6.772716 TGTTGCTGATTTTAAGACCTCTTCTT 59.227 34.615 0.00 0.00 46.91 2.52
6597 8256 6.299141 TGTTGCTGATTTTAAGACCTCTTCT 58.701 36.000 0.00 0.00 37.40 2.85
6631 8290 5.395682 AAACAGGATGGTCACATGAAATG 57.604 39.130 0.00 0.00 45.05 2.32
6632 8291 7.233348 ACTTTAAACAGGATGGTCACATGAAAT 59.767 33.333 0.00 0.00 27.21 2.17
6633 8292 6.549364 ACTTTAAACAGGATGGTCACATGAAA 59.451 34.615 0.00 0.00 27.21 2.69
6634 8293 6.068010 ACTTTAAACAGGATGGTCACATGAA 58.932 36.000 0.00 0.00 27.21 2.57
6635 8294 5.630121 ACTTTAAACAGGATGGTCACATGA 58.370 37.500 0.00 0.00 27.21 3.07
6636 8295 5.964958 ACTTTAAACAGGATGGTCACATG 57.035 39.130 0.00 0.00 27.21 3.21
6637 8296 8.472007 TTTTACTTTAAACAGGATGGTCACAT 57.528 30.769 0.00 0.00 27.21 3.21
6638 8297 7.883391 TTTTACTTTAAACAGGATGGTCACA 57.117 32.000 0.00 0.00 27.21 3.58
6639 8298 9.191995 CATTTTTACTTTAAACAGGATGGTCAC 57.808 33.333 0.00 0.00 27.21 3.67
6640 8299 9.137459 TCATTTTTACTTTAAACAGGATGGTCA 57.863 29.630 0.00 0.00 27.21 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.