Multiple sequence alignment - TraesCS2B01G197600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G197600 chr2B 100.000 4985 0 0 1 4985 175419298 175414314 0.000000e+00 9206.0
1 TraesCS2B01G197600 chr2B 88.576 604 45 17 4382 4968 697900647 697901243 0.000000e+00 712.0
2 TraesCS2B01G197600 chr2A 94.527 3289 127 25 971 4244 126649883 126646633 0.000000e+00 5027.0
3 TraesCS2B01G197600 chr2A 89.451 711 44 21 145 845 176571783 176571094 0.000000e+00 869.0
4 TraesCS2B01G197600 chr2A 87.417 151 14 3 1 146 176571962 176571812 8.580000e-38 169.0
5 TraesCS2B01G197600 chr2A 88.971 136 10 2 4244 4378 126646336 126646205 3.990000e-36 163.0
6 TraesCS2B01G197600 chr2D 94.346 2087 96 13 973 3050 122400606 122398533 0.000000e+00 3181.0
7 TraesCS2B01G197600 chr2D 91.422 1294 69 24 3090 4378 122398539 122397283 0.000000e+00 1736.0
8 TraesCS2B01G197600 chr2D 81.215 181 22 12 676 845 503273149 503272970 8.700000e-28 135.0
9 TraesCS2B01G197600 chr4B 98.847 607 5 2 4379 4985 468248220 468248824 0.000000e+00 1081.0
10 TraesCS2B01G197600 chr6B 95.881 607 19 4 4382 4985 685081241 685081844 0.000000e+00 977.0
11 TraesCS2B01G197600 chr6B 83.937 884 95 29 1 845 531798219 531797344 0.000000e+00 802.0
12 TraesCS2B01G197600 chr6B 90.427 585 36 16 4382 4960 224901375 224900805 0.000000e+00 752.0
13 TraesCS2B01G197600 chr6B 95.890 73 3 0 862 934 531797360 531797288 8.770000e-23 119.0
14 TraesCS2B01G197600 chr6B 73.163 313 53 27 535 837 164725461 164725752 3.200000e-12 84.2
15 TraesCS2B01G197600 chr1A 94.098 610 25 8 4382 4985 382098041 382097437 0.000000e+00 917.0
16 TraesCS2B01G197600 chr1A 82.819 681 69 27 149 817 502687080 502686436 2.600000e-157 566.0
17 TraesCS2B01G197600 chr1A 87.705 122 14 1 21 142 502687234 502687114 1.870000e-29 141.0
18 TraesCS2B01G197600 chr7B 93.924 609 26 10 4382 4985 223664717 223665319 0.000000e+00 909.0
19 TraesCS2B01G197600 chr7B 93.443 610 28 10 4382 4985 358413707 358414310 0.000000e+00 894.0
20 TraesCS2B01G197600 chr7B 89.123 616 46 15 4382 4985 700888216 700887610 0.000000e+00 747.0
21 TraesCS2B01G197600 chr7B 78.116 329 50 17 320 638 208140138 208140454 6.590000e-44 189.0
22 TraesCS2B01G197600 chr5B 89.727 623 42 12 4376 4985 8937979 8938592 0.000000e+00 776.0
23 TraesCS2B01G197600 chr5B 85.694 713 52 23 145 845 380320549 380321223 0.000000e+00 706.0
24 TraesCS2B01G197600 chr5B 75.370 540 86 22 320 842 692752358 692752867 3.020000e-52 217.0
25 TraesCS2B01G197600 chr5B 78.899 327 51 15 320 638 241157772 241158088 6.540000e-49 206.0
26 TraesCS2B01G197600 chr5B 93.396 106 5 1 862 965 380321207 380321312 6.680000e-34 156.0
27 TraesCS2B01G197600 chr6A 87.970 399 36 10 454 845 605057399 605057792 1.260000e-125 460.0
28 TraesCS2B01G197600 chr1D 79.010 505 73 27 372 850 317111459 317110962 1.040000e-81 315.0
29 TraesCS2B01G197600 chr5D 78.287 327 51 18 320 638 470063926 470064240 5.090000e-45 193.0
30 TraesCS2B01G197600 chr5D 75.688 436 68 25 422 845 540199492 540199901 3.070000e-42 183.0
31 TraesCS2B01G197600 chrUn 75.515 437 64 23 422 845 18087100 18087506 1.840000e-39 174.0
32 TraesCS2B01G197600 chr4A 77.698 278 40 18 575 844 596544849 596544586 3.110000e-32 150.0
33 TraesCS2B01G197600 chr3B 73.817 317 51 28 535 838 123394598 123394895 4.110000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G197600 chr2B 175414314 175419298 4984 True 9206.0 9206 100.0000 1 4985 1 chr2B.!!$R1 4984
1 TraesCS2B01G197600 chr2B 697900647 697901243 596 False 712.0 712 88.5760 4382 4968 1 chr2B.!!$F1 586
2 TraesCS2B01G197600 chr2A 126646205 126649883 3678 True 2595.0 5027 91.7490 971 4378 2 chr2A.!!$R1 3407
3 TraesCS2B01G197600 chr2A 176571094 176571962 868 True 519.0 869 88.4340 1 845 2 chr2A.!!$R2 844
4 TraesCS2B01G197600 chr2D 122397283 122400606 3323 True 2458.5 3181 92.8840 973 4378 2 chr2D.!!$R2 3405
5 TraesCS2B01G197600 chr4B 468248220 468248824 604 False 1081.0 1081 98.8470 4379 4985 1 chr4B.!!$F1 606
6 TraesCS2B01G197600 chr6B 685081241 685081844 603 False 977.0 977 95.8810 4382 4985 1 chr6B.!!$F2 603
7 TraesCS2B01G197600 chr6B 224900805 224901375 570 True 752.0 752 90.4270 4382 4960 1 chr6B.!!$R1 578
8 TraesCS2B01G197600 chr6B 531797288 531798219 931 True 460.5 802 89.9135 1 934 2 chr6B.!!$R2 933
9 TraesCS2B01G197600 chr1A 382097437 382098041 604 True 917.0 917 94.0980 4382 4985 1 chr1A.!!$R1 603
10 TraesCS2B01G197600 chr1A 502686436 502687234 798 True 353.5 566 85.2620 21 817 2 chr1A.!!$R2 796
11 TraesCS2B01G197600 chr7B 223664717 223665319 602 False 909.0 909 93.9240 4382 4985 1 chr7B.!!$F2 603
12 TraesCS2B01G197600 chr7B 358413707 358414310 603 False 894.0 894 93.4430 4382 4985 1 chr7B.!!$F3 603
13 TraesCS2B01G197600 chr7B 700887610 700888216 606 True 747.0 747 89.1230 4382 4985 1 chr7B.!!$R1 603
14 TraesCS2B01G197600 chr5B 8937979 8938592 613 False 776.0 776 89.7270 4376 4985 1 chr5B.!!$F1 609
15 TraesCS2B01G197600 chr5B 380320549 380321312 763 False 431.0 706 89.5450 145 965 2 chr5B.!!$F4 820
16 TraesCS2B01G197600 chr5B 692752358 692752867 509 False 217.0 217 75.3700 320 842 1 chr5B.!!$F3 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 952 0.179234 CCCAAAACCGGTTTGCCTTT 59.821 50.000 32.23 14.29 44.57 3.11 F
1240 1349 0.320374 ATCGCAACTCGTTTCCTCCA 59.680 50.000 0.00 0.00 39.67 3.86 F
1635 1744 0.466124 GGCTCTGATACTGTCCACCC 59.534 60.000 0.00 0.00 0.00 4.61 F
2778 2898 1.068895 CTGCTTTGTTTGCACCATCCA 59.931 47.619 0.00 0.00 36.37 3.41 F
3465 3626 0.034960 GGAACCAAGAGGAGGAAGCC 60.035 60.000 0.00 0.00 38.69 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2234 0.310854 GAAAAAGTGTCCGGTGCCAG 59.689 55.000 0.00 0.0 0.00 4.85 R
2688 2808 0.667993 CGGCAGAAAAGGCAACAAGA 59.332 50.000 0.00 0.0 41.41 3.02 R
3073 3233 1.408340 CAACAACTCAACATGGTGCCA 59.592 47.619 5.66 0.0 0.00 4.92 R
3797 3958 1.905215 CAGAGTTCAGATGGGTCCTGT 59.095 52.381 0.00 0.0 33.57 4.00 R
4380 4843 2.166870 CCATGCATGCTACCAAACACAT 59.833 45.455 21.69 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.009774 CAGGGGAGTGAACGCAATAAG 58.990 52.381 0.00 0.00 0.00 1.73
78 84 5.441500 TGAAGTGAAACCATGGAACTAACA 58.558 37.500 21.47 15.09 37.80 2.41
430 477 8.661257 ACATTTTTGTGATATACGATGAACGAA 58.339 29.630 0.00 0.00 45.77 3.85
784 887 2.200899 CCAGAAAACCGGCAAAACAAG 58.799 47.619 0.00 0.00 0.00 3.16
796 899 4.032786 CGGCAAAACAAGAAACCAGAAAAG 59.967 41.667 0.00 0.00 0.00 2.27
800 906 7.308288 GGCAAAACAAGAAACCAGAAAAGAAAA 60.308 33.333 0.00 0.00 0.00 2.29
845 951 0.688087 TCCCAAAACCGGTTTGCCTT 60.688 50.000 32.23 14.69 44.57 4.35
846 952 0.179234 CCCAAAACCGGTTTGCCTTT 59.821 50.000 32.23 14.29 44.57 3.11
847 953 1.407575 CCCAAAACCGGTTTGCCTTTT 60.408 47.619 32.23 13.52 44.57 2.27
848 954 2.360844 CCAAAACCGGTTTGCCTTTTT 58.639 42.857 32.23 12.76 44.57 1.94
877 983 4.366159 ACCAAAACCGGTTTGCCT 57.634 50.000 32.23 15.08 44.57 4.75
893 999 1.699634 TGCCTGGAACTGCTCTAAAGT 59.300 47.619 0.00 0.00 0.00 2.66
975 1083 1.375551 CAAATAGGGCCCGTACACAC 58.624 55.000 18.44 0.00 0.00 3.82
978 1086 1.669999 ATAGGGCCCGTACACACGTC 61.670 60.000 18.44 0.00 46.96 4.34
986 1094 0.995234 CGTACACACGTCGACACCTG 60.995 60.000 17.16 9.66 43.31 4.00
989 1097 4.640855 ACACGTCGACACCTGCGG 62.641 66.667 17.16 0.00 0.00 5.69
990 1098 4.640855 CACGTCGACACCTGCGGT 62.641 66.667 17.16 0.00 35.62 5.68
991 1099 2.979676 ACGTCGACACCTGCGGTA 60.980 61.111 17.16 0.00 32.11 4.02
1029 1137 3.239253 AAGACCGGCCCAACGAGT 61.239 61.111 0.00 0.00 35.47 4.18
1185 1294 1.582968 GCCGGTACTGAAGACGACA 59.417 57.895 1.90 0.00 0.00 4.35
1204 1313 0.736325 AACGTCGGCTTGATTCTCCG 60.736 55.000 0.00 0.00 44.16 4.63
1206 1315 2.174319 GTCGGCTTGATTCTCCGCC 61.174 63.158 7.41 0.00 42.65 6.13
1216 1325 1.139853 GATTCTCCGCCACCAATCTCT 59.860 52.381 0.00 0.00 0.00 3.10
1227 1336 1.204704 ACCAATCTCTGACGATCGCAA 59.795 47.619 16.60 2.15 0.00 4.85
1229 1338 2.534298 CAATCTCTGACGATCGCAACT 58.466 47.619 16.60 0.00 0.00 3.16
1240 1349 0.320374 ATCGCAACTCGTTTCCTCCA 59.680 50.000 0.00 0.00 39.67 3.86
1256 1365 0.613572 TCCAAAATTTCGGGGCCTCC 60.614 55.000 0.84 0.51 0.00 4.30
1278 1387 1.522092 CGCCTCCATCTGCTACCAA 59.478 57.895 0.00 0.00 0.00 3.67
1285 1394 1.207791 CATCTGCTACCAAGAGGGGT 58.792 55.000 0.00 0.00 45.10 4.95
1451 1560 2.757917 GCCAGTCTCCTCCGCTCT 60.758 66.667 0.00 0.00 0.00 4.09
1460 1569 2.681778 CTCCGCTCTCCACACCCT 60.682 66.667 0.00 0.00 0.00 4.34
1462 1571 2.232298 CTCCGCTCTCCACACCCTTC 62.232 65.000 0.00 0.00 0.00 3.46
1463 1572 2.266055 CGCTCTCCACACCCTTCC 59.734 66.667 0.00 0.00 0.00 3.46
1466 1575 1.229658 CTCTCCACACCCTTCCCCT 60.230 63.158 0.00 0.00 0.00 4.79
1476 1585 2.736826 CCTTCCCCTCCTTCTCCGC 61.737 68.421 0.00 0.00 0.00 5.54
1542 1651 2.717639 AGGATTCGGGATTCACTTGG 57.282 50.000 0.00 0.00 0.00 3.61
1635 1744 0.466124 GGCTCTGATACTGTCCACCC 59.534 60.000 0.00 0.00 0.00 4.61
1711 1820 2.609737 CCAAGAAAAGTACCGCGACTCT 60.610 50.000 8.23 0.00 0.00 3.24
1729 1838 6.633634 GCGACTCTACTTGTCATAACTGATAC 59.366 42.308 0.00 0.00 34.37 2.24
1753 1867 3.159472 TCATTTTCCTCTTGCTGCACAT 58.841 40.909 0.00 0.00 0.00 3.21
1786 1905 5.236655 TGCTTCTCGATTCTACACTAGTG 57.763 43.478 21.44 21.44 0.00 2.74
1838 1957 3.330701 TCTTTGGAGTAGTTGGCCAGATT 59.669 43.478 5.11 0.00 32.47 2.40
1863 1982 5.241403 TGGATACAGCAGGGTTATATTGG 57.759 43.478 0.00 0.00 46.17 3.16
1899 2018 5.697473 TTCAGTTTTCGTATGAATTGCCA 57.303 34.783 0.00 0.00 33.20 4.92
2115 2234 7.697691 ACTTTGTATGCAACTTGATATACTGC 58.302 34.615 0.00 0.00 33.82 4.40
2122 2241 3.199880 ACTTGATATACTGCTGGCACC 57.800 47.619 0.00 0.00 0.00 5.01
2129 2248 4.320456 CTGCTGGCACCGGACACT 62.320 66.667 9.46 0.00 0.00 3.55
2231 2351 8.265055 TCTAAATCTTCGGGGGCTATAAATATG 58.735 37.037 0.00 0.00 0.00 1.78
2530 2650 7.340999 TGCTACATGGTAGTCTTGAAGTACATA 59.659 37.037 0.00 0.00 35.76 2.29
2531 2651 7.648510 GCTACATGGTAGTCTTGAAGTACATAC 59.351 40.741 0.00 0.00 35.76 2.39
2532 2652 7.476540 ACATGGTAGTCTTGAAGTACATACA 57.523 36.000 0.00 0.00 35.76 2.29
2533 2653 8.079211 ACATGGTAGTCTTGAAGTACATACAT 57.921 34.615 0.00 0.00 35.76 2.29
2567 2687 1.805254 CTGCTATGTGGTTGCAGCC 59.195 57.895 13.50 13.50 46.62 4.85
2580 2700 2.829120 GTTGCAGCCCAATAAACCCTTA 59.171 45.455 0.00 0.00 35.55 2.69
2778 2898 1.068895 CTGCTTTGTTTGCACCATCCA 59.931 47.619 0.00 0.00 36.37 3.41
2795 2915 7.013655 GCACCATCCAATTTGTATGTCTATTCT 59.986 37.037 1.88 0.00 0.00 2.40
2796 2916 8.906867 CACCATCCAATTTGTATGTCTATTCTT 58.093 33.333 1.88 0.00 0.00 2.52
3043 3203 8.882415 TTACTGGTTTAAAGTCTTACACTCTG 57.118 34.615 0.00 0.00 32.30 3.35
3044 3204 6.885922 ACTGGTTTAAAGTCTTACACTCTGT 58.114 36.000 0.00 0.00 32.30 3.41
3045 3205 7.336396 ACTGGTTTAAAGTCTTACACTCTGTT 58.664 34.615 0.00 0.00 32.30 3.16
3046 3206 7.827729 ACTGGTTTAAAGTCTTACACTCTGTTT 59.172 33.333 0.00 0.00 32.30 2.83
3047 3207 7.981142 TGGTTTAAAGTCTTACACTCTGTTTG 58.019 34.615 0.00 0.00 32.30 2.93
3048 3208 7.825270 TGGTTTAAAGTCTTACACTCTGTTTGA 59.175 33.333 0.00 0.00 32.30 2.69
3049 3209 8.121086 GGTTTAAAGTCTTACACTCTGTTTGAC 58.879 37.037 0.00 0.00 32.30 3.18
3050 3210 5.968387 AAAGTCTTACACTCTGTTTGACG 57.032 39.130 0.00 0.00 36.88 4.35
3051 3211 4.650754 AGTCTTACACTCTGTTTGACGT 57.349 40.909 0.00 0.00 36.88 4.34
3052 3212 5.007385 AGTCTTACACTCTGTTTGACGTT 57.993 39.130 0.00 0.00 36.88 3.99
3053 3213 6.140303 AGTCTTACACTCTGTTTGACGTTA 57.860 37.500 0.00 0.00 36.88 3.18
3054 3214 5.975939 AGTCTTACACTCTGTTTGACGTTAC 59.024 40.000 0.00 0.00 36.88 2.50
3055 3215 4.971830 TCTTACACTCTGTTTGACGTTACG 59.028 41.667 2.19 2.19 0.00 3.18
3056 3216 2.466846 ACACTCTGTTTGACGTTACGG 58.533 47.619 10.20 0.00 0.00 4.02
3057 3217 2.099592 ACACTCTGTTTGACGTTACGGA 59.900 45.455 10.20 0.00 0.00 4.69
3058 3218 3.117794 CACTCTGTTTGACGTTACGGAA 58.882 45.455 10.20 0.00 0.00 4.30
3059 3219 3.552699 CACTCTGTTTGACGTTACGGAAA 59.447 43.478 10.20 4.95 0.00 3.13
3060 3220 4.210537 CACTCTGTTTGACGTTACGGAAAT 59.789 41.667 10.20 0.00 0.00 2.17
3061 3221 5.403166 CACTCTGTTTGACGTTACGGAAATA 59.597 40.000 10.20 5.39 0.00 1.40
3062 3222 5.632347 ACTCTGTTTGACGTTACGGAAATAG 59.368 40.000 10.20 14.09 0.00 1.73
3063 3223 5.531634 TCTGTTTGACGTTACGGAAATAGT 58.468 37.500 19.22 0.00 30.28 2.12
3064 3224 5.403166 TCTGTTTGACGTTACGGAAATAGTG 59.597 40.000 19.22 5.38 30.28 2.74
3065 3225 5.288015 TGTTTGACGTTACGGAAATAGTGA 58.712 37.500 10.20 0.00 0.00 3.41
3066 3226 5.403166 TGTTTGACGTTACGGAAATAGTGAG 59.597 40.000 10.20 0.00 0.00 3.51
3067 3227 5.375417 TTGACGTTACGGAAATAGTGAGA 57.625 39.130 10.20 0.00 0.00 3.27
3068 3228 4.978186 TGACGTTACGGAAATAGTGAGAG 58.022 43.478 10.20 0.00 0.00 3.20
3069 3229 4.142534 TGACGTTACGGAAATAGTGAGAGG 60.143 45.833 10.20 0.00 0.00 3.69
3070 3230 3.760684 ACGTTACGGAAATAGTGAGAGGT 59.239 43.478 10.20 0.00 0.00 3.85
3071 3231 4.219288 ACGTTACGGAAATAGTGAGAGGTT 59.781 41.667 10.20 0.00 0.00 3.50
3072 3232 5.415701 ACGTTACGGAAATAGTGAGAGGTTA 59.584 40.000 10.20 0.00 0.00 2.85
3073 3233 6.096001 ACGTTACGGAAATAGTGAGAGGTTAT 59.904 38.462 10.20 0.00 0.00 1.89
3074 3234 6.417044 CGTTACGGAAATAGTGAGAGGTTATG 59.583 42.308 0.00 0.00 0.00 1.90
3075 3235 5.277857 ACGGAAATAGTGAGAGGTTATGG 57.722 43.478 0.00 0.00 0.00 2.74
3076 3236 4.058817 CGGAAATAGTGAGAGGTTATGGC 58.941 47.826 0.00 0.00 0.00 4.40
3077 3237 4.442893 CGGAAATAGTGAGAGGTTATGGCA 60.443 45.833 0.00 0.00 0.00 4.92
3078 3238 4.816925 GGAAATAGTGAGAGGTTATGGCAC 59.183 45.833 0.00 0.00 0.00 5.01
3079 3239 4.423625 AATAGTGAGAGGTTATGGCACC 57.576 45.455 0.00 0.00 37.04 5.01
3080 3240 1.656587 AGTGAGAGGTTATGGCACCA 58.343 50.000 0.00 0.00 39.62 4.17
3081 3241 2.200081 AGTGAGAGGTTATGGCACCAT 58.800 47.619 7.45 7.45 39.62 3.55
3082 3242 2.092753 AGTGAGAGGTTATGGCACCATG 60.093 50.000 12.54 0.00 39.62 3.66
3083 3243 1.915489 TGAGAGGTTATGGCACCATGT 59.085 47.619 12.54 0.00 39.62 3.21
3084 3244 2.308570 TGAGAGGTTATGGCACCATGTT 59.691 45.455 12.54 0.00 39.62 2.71
3085 3245 2.684881 GAGAGGTTATGGCACCATGTTG 59.315 50.000 12.54 0.00 39.62 3.33
3086 3246 2.308570 AGAGGTTATGGCACCATGTTGA 59.691 45.455 12.54 0.00 39.62 3.18
3087 3247 2.684881 GAGGTTATGGCACCATGTTGAG 59.315 50.000 12.54 0.00 39.62 3.02
3088 3248 2.041620 AGGTTATGGCACCATGTTGAGT 59.958 45.455 12.54 0.00 39.62 3.41
3159 3319 0.948050 AGGGTGATGAGGAGGAGGAT 59.052 55.000 0.00 0.00 0.00 3.24
3248 3408 5.594725 TGGAACTTTATGCACTGTGGTTTTA 59.405 36.000 10.21 0.00 0.00 1.52
3374 3535 4.587584 TGCATCATTTCTTTGTCTTGCA 57.412 36.364 0.00 0.00 0.00 4.08
3465 3626 0.034960 GGAACCAAGAGGAGGAAGCC 60.035 60.000 0.00 0.00 38.69 4.35
3532 3693 4.263683 ACCTCCTTTTCCTTCTGAATCAGG 60.264 45.833 10.71 0.00 36.05 3.86
3620 3781 3.573967 TGATTGATGATCAGTAGCCGCTA 59.426 43.478 0.09 0.00 39.83 4.26
3651 3812 3.440127 ACCCATTCAACATTGGTTAGGG 58.560 45.455 0.00 0.00 38.73 3.53
3654 3815 4.285775 CCCATTCAACATTGGTTAGGGTTT 59.714 41.667 0.00 0.00 34.87 3.27
3668 3829 7.757611 TGGTTAGGGTTTTTGGTATTCTTCTA 58.242 34.615 0.00 0.00 0.00 2.10
3707 3868 4.953579 GGGCAATTTTGATGGAAGGTAGTA 59.046 41.667 0.00 0.00 0.00 1.82
3765 3926 3.363970 CGTTCAGGAGTTCATTTTGGTCG 60.364 47.826 0.00 0.00 0.00 4.79
3789 3950 8.656806 TCGTGGTATTAAGAAATGGAATCCTAT 58.343 33.333 0.00 0.00 0.00 2.57
3797 3958 9.973661 TTAAGAAATGGAATCCTATGAGAAACA 57.026 29.630 0.00 0.00 0.00 2.83
3805 3966 2.838202 TCCTATGAGAAACACAGGACCC 59.162 50.000 0.00 0.00 45.92 4.46
3813 3974 2.568623 AACACAGGACCCATCTGAAC 57.431 50.000 0.00 0.00 36.22 3.18
3969 4134 0.472471 TTCACGGAAGAAACCTGGCT 59.528 50.000 0.00 0.00 0.00 4.75
3971 4136 0.250295 CACGGAAGAAACCTGGCTGA 60.250 55.000 0.00 0.00 0.00 4.26
3993 4158 6.120220 TGATGATGATTTCAAGCTCACATCT 58.880 36.000 0.00 0.00 38.03 2.90
4017 4182 2.334946 TTTGGCATGTGCTCCGCTC 61.335 57.895 4.84 0.00 41.70 5.03
4061 4226 5.119434 TGAAAGCGTGTTTTGTTCTTTTTCC 59.881 36.000 0.00 0.00 0.00 3.13
4063 4228 3.194755 AGCGTGTTTTGTTCTTTTTCCCT 59.805 39.130 0.00 0.00 0.00 4.20
4065 4230 4.109766 CGTGTTTTGTTCTTTTTCCCTCC 58.890 43.478 0.00 0.00 0.00 4.30
4109 4274 6.615316 TGGTGTCTTGGATAAGGAAGATGATA 59.385 38.462 0.00 0.00 34.59 2.15
4227 4392 4.153411 CAACTCTAACCGATCCCCTCTAT 58.847 47.826 0.00 0.00 0.00 1.98
4228 4393 5.322754 CAACTCTAACCGATCCCCTCTATA 58.677 45.833 0.00 0.00 0.00 1.31
4229 4394 5.799978 ACTCTAACCGATCCCCTCTATAT 57.200 43.478 0.00 0.00 0.00 0.86
4230 4395 6.905067 ACTCTAACCGATCCCCTCTATATA 57.095 41.667 0.00 0.00 0.00 0.86
4231 4396 6.902408 ACTCTAACCGATCCCCTCTATATAG 58.098 44.000 3.10 3.10 0.00 1.31
4270 4732 2.242882 AACGGCCCGGTATCCTATAT 57.757 50.000 8.57 0.00 0.00 0.86
4292 4754 3.547746 AGGACTACTTTCGCTCCTCTAG 58.452 50.000 0.00 0.00 0.00 2.43
4301 4763 2.111384 TCGCTCCTCTAGAAAATGGCT 58.889 47.619 0.00 0.00 0.00 4.75
4328 4790 8.697292 GTTTCTAACTGATCCCTGATACTTACT 58.303 37.037 0.00 0.00 0.00 2.24
4332 4794 5.721225 ACTGATCCCTGATACTTACTGGAT 58.279 41.667 0.00 0.00 0.00 3.41
4378 4841 9.015367 TCATTTATTTTTGGTCCATCGAGTTAA 57.985 29.630 0.00 0.00 0.00 2.01
4379 4842 9.289303 CATTTATTTTTGGTCCATCGAGTTAAG 57.711 33.333 0.00 0.00 0.00 1.85
4380 4843 8.624367 TTTATTTTTGGTCCATCGAGTTAAGA 57.376 30.769 0.00 0.00 0.00 2.10
4555 5018 5.885881 TGTTTAGACACGCTGAACAATTTT 58.114 33.333 0.00 0.00 46.31 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.125316 CAGTTCTTATTGCGTTCACTCCC 59.875 47.826 0.00 0.00 0.00 4.30
26 27 3.347958 TGGCATTTTTCGTGACAGTTC 57.652 42.857 0.00 0.00 29.53 3.01
61 62 6.575162 ATTCAGTGTTAGTTCCATGGTTTC 57.425 37.500 12.58 3.62 0.00 2.78
95 101 2.046892 CCTAGTTGCAGCGGCTGT 60.047 61.111 28.88 13.34 41.91 4.40
232 269 9.979270 TCACGTTTTAAGTAATTTTTCACGTTA 57.021 25.926 0.00 0.00 36.27 3.18
573 643 8.383318 TGGTTCAGTTTTGAAAATTTGTTCAA 57.617 26.923 1.91 1.91 44.49 2.69
745 848 5.995446 TCTGGTTTGCCCTGTTTTATTTTT 58.005 33.333 0.00 0.00 33.97 1.94
746 849 5.622346 TCTGGTTTGCCCTGTTTTATTTT 57.378 34.783 0.00 0.00 33.97 1.82
747 850 5.622346 TTCTGGTTTGCCCTGTTTTATTT 57.378 34.783 0.00 0.00 33.97 1.40
748 851 5.622346 TTTCTGGTTTGCCCTGTTTTATT 57.378 34.783 0.00 0.00 33.97 1.40
749 852 5.364778 GTTTTCTGGTTTGCCCTGTTTTAT 58.635 37.500 0.00 0.00 33.97 1.40
750 853 4.383226 GGTTTTCTGGTTTGCCCTGTTTTA 60.383 41.667 0.00 0.00 33.97 1.52
784 887 5.404096 TCAACCGTTTTCTTTTCTGGTTTC 58.596 37.500 0.00 0.00 37.60 2.78
796 899 4.127907 AGAAGGTTCTCTCAACCGTTTTC 58.872 43.478 0.00 0.00 44.82 2.29
800 906 3.764218 TCTAGAAGGTTCTCTCAACCGT 58.236 45.455 0.00 0.00 44.82 4.83
849 955 2.168728 CCGGTTTTGGTTCCCTCAAAAA 59.831 45.455 0.00 0.00 43.08 1.94
850 956 1.757699 CCGGTTTTGGTTCCCTCAAAA 59.242 47.619 0.00 0.00 40.46 2.44
851 957 1.342175 ACCGGTTTTGGTTCCCTCAAA 60.342 47.619 0.00 0.00 39.99 2.69
852 958 0.259356 ACCGGTTTTGGTTCCCTCAA 59.741 50.000 0.00 0.00 39.99 3.02
853 959 1.924352 ACCGGTTTTGGTTCCCTCA 59.076 52.632 0.00 0.00 39.99 3.86
854 960 4.914128 ACCGGTTTTGGTTCCCTC 57.086 55.556 0.00 0.00 39.99 4.30
860 966 1.681486 CCAGGCAAACCGGTTTTGGT 61.681 55.000 29.47 16.72 44.34 3.67
861 967 1.068921 CCAGGCAAACCGGTTTTGG 59.931 57.895 29.74 28.04 44.34 3.28
862 968 0.461961 TTCCAGGCAAACCGGTTTTG 59.538 50.000 29.74 23.68 46.57 2.44
863 969 0.462375 GTTCCAGGCAAACCGGTTTT 59.538 50.000 29.74 13.47 42.76 2.43
864 970 0.396556 AGTTCCAGGCAAACCGGTTT 60.397 50.000 26.87 26.87 42.76 3.27
865 971 1.106944 CAGTTCCAGGCAAACCGGTT 61.107 55.000 15.86 15.86 42.76 4.44
866 972 1.528309 CAGTTCCAGGCAAACCGGT 60.528 57.895 0.00 0.00 42.76 5.28
867 973 2.919494 GCAGTTCCAGGCAAACCGG 61.919 63.158 0.00 0.00 42.76 5.28
868 974 1.856265 GAGCAGTTCCAGGCAAACCG 61.856 60.000 0.00 0.00 42.76 4.44
869 975 0.538287 AGAGCAGTTCCAGGCAAACC 60.538 55.000 0.00 0.00 0.00 3.27
870 976 2.185004 TAGAGCAGTTCCAGGCAAAC 57.815 50.000 0.00 0.00 0.00 2.93
871 977 2.949177 TTAGAGCAGTTCCAGGCAAA 57.051 45.000 0.00 0.00 0.00 3.68
872 978 2.106511 ACTTTAGAGCAGTTCCAGGCAA 59.893 45.455 0.00 0.00 0.00 4.52
873 979 1.699634 ACTTTAGAGCAGTTCCAGGCA 59.300 47.619 0.00 0.00 0.00 4.75
874 980 2.481289 ACTTTAGAGCAGTTCCAGGC 57.519 50.000 0.00 0.00 0.00 4.85
875 981 2.996621 CGAACTTTAGAGCAGTTCCAGG 59.003 50.000 7.95 0.00 45.07 4.45
876 982 3.914312 TCGAACTTTAGAGCAGTTCCAG 58.086 45.455 7.95 0.00 45.07 3.86
877 983 4.202223 ACTTCGAACTTTAGAGCAGTTCCA 60.202 41.667 7.95 0.00 45.07 3.53
934 1040 4.129737 GCGAGCGTCCAGGTGCTA 62.130 66.667 8.68 0.00 42.60 3.49
968 1076 1.273455 GCAGGTGTCGACGTGTGTAC 61.273 60.000 11.62 1.76 39.67 2.90
969 1077 1.008194 GCAGGTGTCGACGTGTGTA 60.008 57.895 11.62 0.00 39.67 2.90
970 1078 2.279252 GCAGGTGTCGACGTGTGT 60.279 61.111 11.62 0.00 39.67 3.72
971 1079 3.394874 CGCAGGTGTCGACGTGTG 61.395 66.667 11.62 10.89 40.84 3.82
986 1094 2.949644 AGATGGGCTTGTATTTTACCGC 59.050 45.455 0.00 0.00 0.00 5.68
989 1097 6.942532 TGATGAGATGGGCTTGTATTTTAC 57.057 37.500 0.00 0.00 0.00 2.01
990 1098 7.283127 GTCTTGATGAGATGGGCTTGTATTTTA 59.717 37.037 0.00 0.00 36.61 1.52
991 1099 6.096001 GTCTTGATGAGATGGGCTTGTATTTT 59.904 38.462 0.00 0.00 36.61 1.82
1128 1237 2.759973 CGGCTAGGGCAGAGGTGA 60.760 66.667 0.00 0.00 40.87 4.02
1185 1294 3.139029 GGAGAATCAAGCCGACGTT 57.861 52.632 0.00 0.00 36.25 3.99
1195 1304 0.911769 AGATTGGTGGCGGAGAATCA 59.088 50.000 0.00 0.00 36.25 2.57
1204 1313 1.576356 GATCGTCAGAGATTGGTGGC 58.424 55.000 0.00 0.00 0.00 5.01
1206 1315 1.203928 GCGATCGTCAGAGATTGGTG 58.796 55.000 17.81 0.00 33.62 4.17
1227 1336 3.252458 CCGAAATTTTGGAGGAAACGAGT 59.748 43.478 18.49 0.00 33.23 4.18
1229 1338 2.554893 CCCGAAATTTTGGAGGAAACGA 59.445 45.455 23.99 0.00 33.23 3.85
1235 1344 0.614697 AGGCCCCGAAATTTTGGAGG 60.615 55.000 23.99 21.74 33.23 4.30
1240 1349 0.679960 CGAGGAGGCCCCGAAATTTT 60.680 55.000 0.00 0.00 40.87 1.82
1256 1365 2.849964 TAGCAGATGGAGGCGCGAG 61.850 63.158 12.10 0.00 34.54 5.03
1451 1560 2.204090 GGAGGGGAAGGGTGTGGA 60.204 66.667 0.00 0.00 0.00 4.02
1460 1569 1.990060 CTGCGGAGAAGGAGGGGAA 60.990 63.158 0.00 0.00 0.00 3.97
1462 1571 4.168291 GCTGCGGAGAAGGAGGGG 62.168 72.222 8.65 0.00 0.00 4.79
1463 1572 4.168291 GGCTGCGGAGAAGGAGGG 62.168 72.222 8.65 0.00 0.00 4.30
1466 1575 3.706373 GGTGGCTGCGGAGAAGGA 61.706 66.667 8.65 0.00 0.00 3.36
1476 1585 2.262915 GAGTCGAGGTGGTGGCTG 59.737 66.667 0.00 0.00 0.00 4.85
1635 1744 4.211584 CCTCATGAAATCATCGAGCTTCAG 59.788 45.833 0.00 0.00 33.61 3.02
1711 1820 6.445357 TGAGCGTATCAGTTATGACAAGTA 57.555 37.500 0.00 0.00 38.57 2.24
1729 1838 1.467035 GCAGCAAGAGGAAAATGAGCG 60.467 52.381 0.00 0.00 0.00 5.03
1753 1867 6.283694 AGAATCGAGAAGCAATACAGCATAA 58.716 36.000 0.00 0.00 36.85 1.90
1786 1905 3.158676 CCCATACTCCCTCTAGCTACAC 58.841 54.545 0.00 0.00 0.00 2.90
1838 1957 7.238723 TCCAATATAACCCTGCTGTATCCAATA 59.761 37.037 0.00 0.00 0.00 1.90
1899 2018 7.603180 TCTGTAACATAAGCAGTCCTGATAT 57.397 36.000 0.00 0.00 0.00 1.63
2013 2132 6.482898 TCTAGTTAATACGCCAATGGGTTA 57.517 37.500 0.00 0.00 38.74 2.85
2091 2210 7.854422 CAGCAGTATATCAAGTTGCATACAAAG 59.146 37.037 20.48 14.16 37.58 2.77
2115 2234 0.310854 GAAAAAGTGTCCGGTGCCAG 59.689 55.000 0.00 0.00 0.00 4.85
2122 2241 6.036083 CCATACAGATGTAGAAAAAGTGTCCG 59.964 42.308 0.00 0.00 33.52 4.79
2208 2328 7.027874 TCATATTTATAGCCCCCGAAGATTT 57.972 36.000 0.00 0.00 0.00 2.17
2209 2329 6.636454 TCATATTTATAGCCCCCGAAGATT 57.364 37.500 0.00 0.00 0.00 2.40
2231 2351 4.927978 TGAGCTAGCAAGGAGTCTAATC 57.072 45.455 18.83 1.20 0.00 1.75
2688 2808 0.667993 CGGCAGAAAAGGCAACAAGA 59.332 50.000 0.00 0.00 41.41 3.02
2745 2865 7.766278 TGCAAACAAAGCAGTTTCCTTAATAAA 59.234 29.630 0.00 0.00 39.55 1.40
2795 2915 8.918202 AGTGTTCATTCAAGTTCCATTACTAA 57.082 30.769 0.00 0.00 0.00 2.24
2796 2916 8.918202 AAGTGTTCATTCAAGTTCCATTACTA 57.082 30.769 0.00 0.00 0.00 1.82
2971 3092 3.323115 CCTTCCAGATATACTGCAGCAGA 59.677 47.826 29.70 12.88 44.52 4.26
3040 3200 5.403166 CACTATTTCCGTAACGTCAAACAGA 59.597 40.000 0.00 0.00 0.00 3.41
3041 3201 5.403166 TCACTATTTCCGTAACGTCAAACAG 59.597 40.000 0.00 0.00 0.00 3.16
3042 3202 5.288015 TCACTATTTCCGTAACGTCAAACA 58.712 37.500 0.00 0.00 0.00 2.83
3043 3203 5.630680 TCTCACTATTTCCGTAACGTCAAAC 59.369 40.000 0.00 0.00 0.00 2.93
3044 3204 5.771469 TCTCACTATTTCCGTAACGTCAAA 58.229 37.500 0.00 0.00 0.00 2.69
3045 3205 5.375417 TCTCACTATTTCCGTAACGTCAA 57.625 39.130 0.00 0.00 0.00 3.18
3046 3206 4.142534 CCTCTCACTATTTCCGTAACGTCA 60.143 45.833 0.00 0.00 0.00 4.35
3047 3207 4.142513 ACCTCTCACTATTTCCGTAACGTC 60.143 45.833 0.00 0.00 0.00 4.34
3048 3208 3.760684 ACCTCTCACTATTTCCGTAACGT 59.239 43.478 0.00 0.00 0.00 3.99
3049 3209 4.367386 ACCTCTCACTATTTCCGTAACG 57.633 45.455 0.00 0.00 0.00 3.18
3050 3210 6.700520 CCATAACCTCTCACTATTTCCGTAAC 59.299 42.308 0.00 0.00 0.00 2.50
3051 3211 6.684613 GCCATAACCTCTCACTATTTCCGTAA 60.685 42.308 0.00 0.00 0.00 3.18
3052 3212 5.221382 GCCATAACCTCTCACTATTTCCGTA 60.221 44.000 0.00 0.00 0.00 4.02
3053 3213 4.443034 GCCATAACCTCTCACTATTTCCGT 60.443 45.833 0.00 0.00 0.00 4.69
3054 3214 4.058817 GCCATAACCTCTCACTATTTCCG 58.941 47.826 0.00 0.00 0.00 4.30
3055 3215 4.816925 GTGCCATAACCTCTCACTATTTCC 59.183 45.833 0.00 0.00 0.00 3.13
3056 3216 4.816925 GGTGCCATAACCTCTCACTATTTC 59.183 45.833 0.00 0.00 37.24 2.17
3057 3217 4.227300 TGGTGCCATAACCTCTCACTATTT 59.773 41.667 0.00 0.00 41.16 1.40
3058 3218 3.780294 TGGTGCCATAACCTCTCACTATT 59.220 43.478 0.00 0.00 41.16 1.73
3059 3219 3.384168 TGGTGCCATAACCTCTCACTAT 58.616 45.455 0.00 0.00 41.16 2.12
3060 3220 2.827755 TGGTGCCATAACCTCTCACTA 58.172 47.619 0.00 0.00 41.16 2.74
3061 3221 1.656587 TGGTGCCATAACCTCTCACT 58.343 50.000 0.00 0.00 41.16 3.41
3062 3222 2.292267 CATGGTGCCATAACCTCTCAC 58.708 52.381 3.07 0.00 41.16 3.51
3063 3223 1.915489 ACATGGTGCCATAACCTCTCA 59.085 47.619 3.07 0.00 41.16 3.27
3064 3224 2.684881 CAACATGGTGCCATAACCTCTC 59.315 50.000 0.00 0.00 41.16 3.20
3065 3225 2.308570 TCAACATGGTGCCATAACCTCT 59.691 45.455 5.66 0.00 41.16 3.69
3066 3226 2.684881 CTCAACATGGTGCCATAACCTC 59.315 50.000 5.66 0.00 41.16 3.85
3067 3227 2.041620 ACTCAACATGGTGCCATAACCT 59.958 45.455 5.66 0.00 41.16 3.50
3068 3228 2.446435 ACTCAACATGGTGCCATAACC 58.554 47.619 5.66 0.00 40.94 2.85
3069 3229 3.255642 ACAACTCAACATGGTGCCATAAC 59.744 43.478 5.66 0.00 34.91 1.89
3070 3230 3.495331 ACAACTCAACATGGTGCCATAA 58.505 40.909 5.66 0.00 34.91 1.90
3071 3231 3.153369 ACAACTCAACATGGTGCCATA 57.847 42.857 5.66 0.00 34.91 2.74
3072 3232 1.999648 ACAACTCAACATGGTGCCAT 58.000 45.000 5.66 0.00 37.08 4.40
3073 3233 1.408340 CAACAACTCAACATGGTGCCA 59.592 47.619 5.66 0.00 0.00 4.92
3074 3234 1.680735 TCAACAACTCAACATGGTGCC 59.319 47.619 5.66 0.00 34.23 5.01
3075 3235 2.358898 AGTCAACAACTCAACATGGTGC 59.641 45.455 5.66 0.00 34.23 5.01
3076 3236 3.627123 TCAGTCAACAACTCAACATGGTG 59.373 43.478 3.69 3.69 35.45 4.17
3077 3237 3.884895 TCAGTCAACAACTCAACATGGT 58.115 40.909 0.00 0.00 35.45 3.55
3078 3238 6.748333 ATATCAGTCAACAACTCAACATGG 57.252 37.500 0.00 0.00 35.45 3.66
3079 3239 7.539710 CCAAATATCAGTCAACAACTCAACATG 59.460 37.037 0.00 0.00 35.45 3.21
3080 3240 7.231317 ACCAAATATCAGTCAACAACTCAACAT 59.769 33.333 0.00 0.00 35.45 2.71
3081 3241 6.545666 ACCAAATATCAGTCAACAACTCAACA 59.454 34.615 0.00 0.00 35.45 3.33
3082 3242 6.970484 ACCAAATATCAGTCAACAACTCAAC 58.030 36.000 0.00 0.00 35.45 3.18
3083 3243 8.564574 GTTACCAAATATCAGTCAACAACTCAA 58.435 33.333 0.00 0.00 35.45 3.02
3084 3244 7.936847 AGTTACCAAATATCAGTCAACAACTCA 59.063 33.333 0.00 0.00 35.45 3.41
3085 3245 8.230486 CAGTTACCAAATATCAGTCAACAACTC 58.770 37.037 0.00 0.00 35.45 3.01
3086 3246 7.719633 ACAGTTACCAAATATCAGTCAACAACT 59.280 33.333 0.00 0.00 39.44 3.16
3087 3247 7.871853 ACAGTTACCAAATATCAGTCAACAAC 58.128 34.615 0.00 0.00 0.00 3.32
3088 3248 9.214957 CTACAGTTACCAAATATCAGTCAACAA 57.785 33.333 0.00 0.00 0.00 2.83
3159 3319 2.825223 TCTGCTTCCTCCTCTTCATCA 58.175 47.619 0.00 0.00 0.00 3.07
3248 3408 6.834168 AACACCCATTTTTCTACATCGAAT 57.166 33.333 0.00 0.00 0.00 3.34
3374 3535 9.784531 CATGGGAGTCAAACTATTAGACAATAT 57.215 33.333 0.00 0.00 34.80 1.28
3465 3626 8.980143 ATTGAACATTAAATGGAAACTTACGG 57.020 30.769 0.00 0.00 33.60 4.02
3610 3771 4.005650 GGTTAACCTTTTTAGCGGCTACT 58.994 43.478 17.83 0.00 0.00 2.57
3620 3781 6.770303 CCAATGTTGAATGGGTTAACCTTTTT 59.230 34.615 23.69 14.34 41.11 1.94
3651 3812 9.934190 TTACAAACGTAGAAGAATACCAAAAAC 57.066 29.630 0.00 0.00 0.00 2.43
3654 3815 8.891671 AGTTACAAACGTAGAAGAATACCAAA 57.108 30.769 0.00 0.00 36.23 3.28
3668 3829 2.577700 TGCCCAATGAGTTACAAACGT 58.422 42.857 0.00 0.00 36.23 3.99
3734 3895 2.970639 TCCTGAACGCGGGAAGAG 59.029 61.111 12.47 0.00 46.59 2.85
3765 3926 9.793259 TCATAGGATTCCATTTCTTAATACCAC 57.207 33.333 5.29 0.00 0.00 4.16
3789 3950 2.038952 CAGATGGGTCCTGTGTTTCTCA 59.961 50.000 0.00 0.00 0.00 3.27
3797 3958 1.905215 CAGAGTTCAGATGGGTCCTGT 59.095 52.381 0.00 0.00 33.57 4.00
3825 3986 5.698832 CCGCAATAGAAACATTCAGAACAA 58.301 37.500 0.00 0.00 0.00 2.83
3931 4094 4.869861 GTGAAATGCACAGAAAACCAAGTT 59.130 37.500 0.00 0.00 46.91 2.66
3969 4134 6.120220 AGATGTGAGCTTGAAATCATCATCA 58.880 36.000 15.91 0.00 38.03 3.07
3971 4136 7.406031 AAAGATGTGAGCTTGAAATCATCAT 57.594 32.000 0.00 0.00 38.03 2.45
3993 4158 2.094803 CGGAGCACATGCCAAACATAAA 60.095 45.455 0.00 0.00 43.38 1.40
4017 4182 3.198635 TCAACTTCTGAATCCTGGCCTAG 59.801 47.826 3.32 0.00 0.00 3.02
4089 4254 8.937835 TGTGATTATCATCTTCCTTATCCAAGA 58.062 33.333 0.00 0.00 33.20 3.02
4109 4274 2.557056 GAGCTGCATGGCATATGTGATT 59.443 45.455 0.00 0.00 38.13 2.57
4270 4732 3.648507 AGAGGAGCGAAAGTAGTCCTA 57.351 47.619 0.00 0.00 37.83 2.94
4292 4754 6.325596 GGATCAGTTAGAAACAGCCATTTTC 58.674 40.000 0.00 0.00 33.81 2.29
4301 4763 7.496346 AAGTATCAGGGATCAGTTAGAAACA 57.504 36.000 0.00 0.00 0.00 2.83
4378 4841 2.794103 TGCATGCTACCAAACACATCT 58.206 42.857 20.33 0.00 0.00 2.90
4379 4842 3.441163 CATGCATGCTACCAAACACATC 58.559 45.455 20.33 0.00 0.00 3.06
4380 4843 2.166870 CCATGCATGCTACCAAACACAT 59.833 45.455 21.69 0.00 0.00 3.21
4555 5018 9.699985 CATTCAAAAACAATTGTTCGAAATTCA 57.300 25.926 23.47 6.69 37.25 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.