Multiple sequence alignment - TraesCS2B01G197400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G197400 chr2B 100.000 4110 0 0 1 4110 175408701 175412810 0.000000e+00 7590.0
1 TraesCS2B01G197400 chr2D 90.513 1697 108 35 1898 3565 122394216 122395888 0.000000e+00 2193.0
2 TraesCS2B01G197400 chr2D 89.169 1505 101 21 238 1697 122392015 122393502 0.000000e+00 1820.0
3 TraesCS2B01G197400 chr2D 85.549 173 8 9 1692 1861 122393748 122393906 9.140000e-37 165.0
4 TraesCS2B01G197400 chr2D 80.165 242 12 12 3876 4110 122396112 122396324 9.200000e-32 148.0
5 TraesCS2B01G197400 chr2A 92.641 1454 62 21 2282 3707 126643033 126644469 0.000000e+00 2050.0
6 TraesCS2B01G197400 chr2A 89.623 1590 101 32 118 1677 126639858 126641413 0.000000e+00 1964.0
7 TraesCS2B01G197400 chr2A 90.698 215 15 2 1880 2094 126641745 126641954 8.700000e-72 281.0
8 TraesCS2B01G197400 chr2A 96.241 133 5 0 2081 2213 126641972 126642104 6.920000e-53 219.0
9 TraesCS2B01G197400 chr2A 87.634 186 8 11 3819 3996 126644466 126644644 6.970000e-48 202.0
10 TraesCS2B01G197400 chr2A 84.685 111 4 5 1775 1878 126641484 126641588 9.400000e-17 99.0
11 TraesCS2B01G197400 chr2A 90.541 74 5 2 19 91 648747156 648747228 3.380000e-16 97.1
12 TraesCS2B01G197400 chr2A 82.558 86 13 2 211 295 126639863 126639947 1.580000e-09 75.0
13 TraesCS2B01G197400 chr5B 97.479 119 3 0 3704 3822 562793821 562793703 1.940000e-48 204.0
14 TraesCS2B01G197400 chr5B 96.552 116 4 0 3706 3821 544393253 544393368 4.190000e-45 193.0
15 TraesCS2B01G197400 chr5B 94.215 121 7 0 3704 3824 245963882 245963762 7.020000e-43 185.0
16 TraesCS2B01G197400 chr3B 95.935 123 4 1 3704 3826 172008617 172008738 9.010000e-47 198.0
17 TraesCS2B01G197400 chr7B 95.000 120 6 0 3703 3822 517095191 517095072 5.420000e-44 189.0
18 TraesCS2B01G197400 chr7B 90.123 81 6 2 19 98 45650412 45650491 2.020000e-18 104.0
19 TraesCS2B01G197400 chr6B 91.971 137 8 3 3704 3838 32323007 32322872 5.420000e-44 189.0
20 TraesCS2B01G197400 chr1D 95.726 117 5 0 3705 3821 392560974 392561090 5.420000e-44 189.0
21 TraesCS2B01G197400 chr1B 95.000 120 6 0 3702 3821 72876074 72876193 5.420000e-44 189.0
22 TraesCS2B01G197400 chr1B 92.308 130 9 1 3700 3828 564919114 564918985 2.520000e-42 183.0
23 TraesCS2B01G197400 chr4D 74.148 352 69 18 1169 1509 463689500 463689160 4.310000e-25 126.0
24 TraesCS2B01G197400 chr4B 73.654 353 71 18 1175 1516 579433576 579433235 2.600000e-22 117.0
25 TraesCS2B01G197400 chr4B 89.873 79 6 2 19 96 167920830 167920907 2.610000e-17 100.0
26 TraesCS2B01G197400 chr6A 88.298 94 11 0 2 95 58029302 58029209 3.360000e-21 113.0
27 TraesCS2B01G197400 chr6A 91.250 80 4 3 19 97 58303019 58302942 5.620000e-19 106.0
28 TraesCS2B01G197400 chr4A 73.295 352 72 18 1169 1509 6009626 6009966 4.340000e-20 110.0
29 TraesCS2B01G197400 chr7A 86.735 98 10 3 3 99 465464101 465464196 5.620000e-19 106.0
30 TraesCS2B01G197400 chr7A 87.500 88 9 2 2 89 87334850 87334935 2.610000e-17 100.0
31 TraesCS2B01G197400 chr7A 90.789 76 4 3 19 93 296601295 296601222 9.400000e-17 99.0
32 TraesCS2B01G197400 chr1A 90.000 80 6 2 19 97 315272051 315272129 7.270000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G197400 chr2B 175408701 175412810 4109 False 7590.000000 7590 100.000000 1 4110 1 chr2B.!!$F1 4109
1 TraesCS2B01G197400 chr2D 122392015 122396324 4309 False 1081.500000 2193 86.349000 238 4110 4 chr2D.!!$F1 3872
2 TraesCS2B01G197400 chr2A 126639858 126644644 4786 False 698.571429 2050 89.154286 118 3996 7 chr2A.!!$F2 3878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.094901 CTCTGACGACGTACGACCAG 59.905 60.0 24.41 18.16 45.77 4.00 F
152 153 0.110056 GGTGATGCGCAAGAGTGTTG 60.110 55.0 17.11 0.00 43.02 3.33 F
231 232 0.174389 ACAGCTAGAGGTGATGCGTG 59.826 55.0 15.31 0.00 45.66 5.34 F
1819 2238 0.038526 GTCGAGTCCATGTCGGTTGT 60.039 55.0 4.59 0.00 38.02 3.32 F
1862 2288 0.865769 CTGTTTTTGTCGACGGAGGG 59.134 55.0 11.62 0.00 0.00 4.30 F
2633 4350 0.918310 AGGAGGGGCTGATCAAAGCT 60.918 55.0 6.87 0.00 43.06 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 2219 0.038526 ACAACCGACATGGACTCGAC 60.039 55.0 5.83 0.0 42.00 4.20 R
1802 2221 0.038618 TGACAACCGACATGGACTCG 60.039 55.0 0.00 0.0 42.00 4.18 R
2085 2905 0.096976 GACGTTACGCGCTACCTACA 59.903 55.0 5.73 0.0 46.11 2.74 R
2788 4507 0.041535 TTGCTGAAAGATGGGGGCAT 59.958 50.0 0.00 0.0 34.07 4.40 R
2789 4508 0.612732 CTTGCTGAAAGATGGGGGCA 60.613 55.0 0.00 0.0 38.24 5.36 R
3808 5691 0.620556 TCCTACGTACTCCCTCCGTT 59.379 55.0 0.00 0.0 36.12 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.452755 AAAAACAGAGGGGCTTTTTCG 57.547 42.857 0.00 0.00 0.00 3.46
38 39 0.673985 AAACAGAGGGGCTTTTTCGC 59.326 50.000 0.00 0.00 0.00 4.70
39 40 0.467290 AACAGAGGGGCTTTTTCGCA 60.467 50.000 0.00 0.00 0.00 5.10
40 41 0.467290 ACAGAGGGGCTTTTTCGCAA 60.467 50.000 0.00 0.00 0.00 4.85
41 42 0.673437 CAGAGGGGCTTTTTCGCAAA 59.327 50.000 0.00 0.00 0.00 3.68
42 43 1.068434 CAGAGGGGCTTTTTCGCAAAA 59.932 47.619 0.00 0.00 0.00 2.44
43 44 1.760029 AGAGGGGCTTTTTCGCAAAAA 59.240 42.857 0.00 0.80 37.99 1.94
44 45 1.864711 GAGGGGCTTTTTCGCAAAAAC 59.135 47.619 0.00 0.00 35.57 2.43
45 46 1.484653 AGGGGCTTTTTCGCAAAAACT 59.515 42.857 0.00 0.00 35.57 2.66
46 47 1.864711 GGGGCTTTTTCGCAAAAACTC 59.135 47.619 0.00 0.00 35.57 3.01
47 48 2.483013 GGGGCTTTTTCGCAAAAACTCT 60.483 45.455 0.00 0.00 35.57 3.24
48 49 2.539688 GGGCTTTTTCGCAAAAACTCTG 59.460 45.455 0.00 0.00 35.57 3.35
49 50 3.443976 GGCTTTTTCGCAAAAACTCTGA 58.556 40.909 0.00 0.00 35.57 3.27
50 51 3.242944 GGCTTTTTCGCAAAAACTCTGAC 59.757 43.478 0.00 0.00 35.57 3.51
51 52 3.061863 GCTTTTTCGCAAAAACTCTGACG 60.062 43.478 0.00 0.00 35.57 4.35
52 53 4.339429 CTTTTTCGCAAAAACTCTGACGA 58.661 39.130 0.00 0.00 35.57 4.20
53 54 3.313274 TTTCGCAAAAACTCTGACGAC 57.687 42.857 0.00 0.00 0.00 4.34
54 55 0.850217 TCGCAAAAACTCTGACGACG 59.150 50.000 0.00 0.00 0.00 5.12
55 56 0.575390 CGCAAAAACTCTGACGACGT 59.425 50.000 0.00 0.00 0.00 4.34
56 57 1.782569 CGCAAAAACTCTGACGACGTA 59.217 47.619 0.00 0.00 0.00 3.57
57 58 2.408110 CGCAAAAACTCTGACGACGTAC 60.408 50.000 0.00 0.00 0.00 3.67
59 60 3.038017 CAAAAACTCTGACGACGTACGA 58.962 45.455 24.41 0.00 45.77 3.43
60 61 2.306799 AAACTCTGACGACGTACGAC 57.693 50.000 24.41 15.62 45.77 4.34
61 62 0.514691 AACTCTGACGACGTACGACC 59.485 55.000 24.41 12.06 45.77 4.79
62 63 0.601046 ACTCTGACGACGTACGACCA 60.601 55.000 24.41 9.27 45.77 4.02
63 64 0.094901 CTCTGACGACGTACGACCAG 59.905 60.000 24.41 18.16 45.77 4.00
64 65 0.319813 TCTGACGACGTACGACCAGA 60.320 55.000 24.41 20.05 44.69 3.86
65 66 0.514255 CTGACGACGTACGACCAGAA 59.486 55.000 24.41 1.76 45.77 3.02
66 67 0.514255 TGACGACGTACGACCAGAAG 59.486 55.000 24.41 5.15 45.77 2.85
67 68 0.792356 GACGACGTACGACCAGAAGC 60.792 60.000 24.41 0.00 45.77 3.86
68 69 1.208358 CGACGTACGACCAGAAGCA 59.792 57.895 24.41 0.00 45.77 3.91
69 70 0.793478 CGACGTACGACCAGAAGCAG 60.793 60.000 24.41 0.00 45.77 4.24
70 71 0.240411 GACGTACGACCAGAAGCAGT 59.760 55.000 24.41 0.00 0.00 4.40
71 72 1.466167 GACGTACGACCAGAAGCAGTA 59.534 52.381 24.41 0.00 0.00 2.74
72 73 1.881973 ACGTACGACCAGAAGCAGTAA 59.118 47.619 24.41 0.00 0.00 2.24
73 74 2.490903 ACGTACGACCAGAAGCAGTAAT 59.509 45.455 24.41 0.00 0.00 1.89
74 75 3.057033 ACGTACGACCAGAAGCAGTAATT 60.057 43.478 24.41 0.00 0.00 1.40
75 76 3.303495 CGTACGACCAGAAGCAGTAATTG 59.697 47.826 10.44 0.00 0.00 2.32
93 94 9.956720 CAGTAATTGCTTTATCATTAGGGAAAG 57.043 33.333 0.00 0.00 33.05 2.62
94 95 9.920946 AGTAATTGCTTTATCATTAGGGAAAGA 57.079 29.630 0.00 0.00 31.83 2.52
99 100 8.924511 TGCTTTATCATTAGGGAAAGATTAGG 57.075 34.615 0.00 0.00 31.83 2.69
100 101 7.944554 TGCTTTATCATTAGGGAAAGATTAGGG 59.055 37.037 0.00 0.00 31.83 3.53
101 102 7.094162 GCTTTATCATTAGGGAAAGATTAGGGC 60.094 40.741 0.00 0.00 31.83 5.19
102 103 4.724279 TCATTAGGGAAAGATTAGGGCC 57.276 45.455 0.00 0.00 0.00 5.80
103 104 3.397955 TCATTAGGGAAAGATTAGGGCCC 59.602 47.826 16.46 16.46 39.12 5.80
104 105 2.598288 TAGGGAAAGATTAGGGCCCA 57.402 50.000 27.56 3.72 41.34 5.36
105 106 1.226311 AGGGAAAGATTAGGGCCCAG 58.774 55.000 27.56 0.00 41.34 4.45
106 107 0.468214 GGGAAAGATTAGGGCCCAGC 60.468 60.000 27.56 6.97 38.68 4.85
107 108 0.819666 GGAAAGATTAGGGCCCAGCG 60.820 60.000 27.56 0.00 0.00 5.18
108 109 0.819666 GAAAGATTAGGGCCCAGCGG 60.820 60.000 27.56 0.00 0.00 5.52
109 110 1.571773 AAAGATTAGGGCCCAGCGGT 61.572 55.000 27.56 4.81 0.00 5.68
110 111 2.203209 GATTAGGGCCCAGCGGTG 60.203 66.667 27.56 7.86 0.00 4.94
111 112 3.774599 GATTAGGGCCCAGCGGTGG 62.775 68.421 27.56 26.78 44.56 4.61
145 146 2.401766 GGTGGAGGTGATGCGCAAG 61.402 63.158 17.11 0.00 43.44 4.01
148 149 1.078848 GGAGGTGATGCGCAAGAGT 60.079 57.895 17.11 0.00 43.02 3.24
149 150 1.364626 GGAGGTGATGCGCAAGAGTG 61.365 60.000 17.11 0.00 43.02 3.51
150 151 0.671781 GAGGTGATGCGCAAGAGTGT 60.672 55.000 17.11 0.00 43.02 3.55
151 152 0.250467 AGGTGATGCGCAAGAGTGTT 60.250 50.000 17.11 0.00 43.02 3.32
152 153 0.110056 GGTGATGCGCAAGAGTGTTG 60.110 55.000 17.11 0.00 43.02 3.33
153 154 0.727122 GTGATGCGCAAGAGTGTTGC 60.727 55.000 17.11 14.75 41.71 4.17
159 160 3.664930 GCAAGAGTGTTGCGTCATC 57.335 52.632 9.47 0.00 35.58 2.92
160 161 0.867746 GCAAGAGTGTTGCGTCATCA 59.132 50.000 9.47 0.00 35.58 3.07
161 162 1.466167 GCAAGAGTGTTGCGTCATCAT 59.534 47.619 9.47 0.00 35.58 2.45
162 163 2.726989 GCAAGAGTGTTGCGTCATCATG 60.727 50.000 9.47 0.00 35.58 3.07
163 164 1.730501 AGAGTGTTGCGTCATCATGG 58.269 50.000 0.00 0.00 0.00 3.66
164 165 1.002430 AGAGTGTTGCGTCATCATGGT 59.998 47.619 0.00 0.00 0.00 3.55
165 166 1.129251 GAGTGTTGCGTCATCATGGTG 59.871 52.381 0.00 0.00 0.00 4.17
166 167 0.454957 GTGTTGCGTCATCATGGTGC 60.455 55.000 0.00 0.00 0.00 5.01
167 168 1.137404 GTTGCGTCATCATGGTGCC 59.863 57.895 0.00 0.00 0.00 5.01
168 169 1.303155 TTGCGTCATCATGGTGCCA 60.303 52.632 0.00 0.00 0.00 4.92
169 170 1.585267 TTGCGTCATCATGGTGCCAC 61.585 55.000 0.00 0.00 0.00 5.01
170 171 2.764314 GCGTCATCATGGTGCCACC 61.764 63.158 7.01 7.01 39.22 4.61
178 179 2.682846 TGGTGCCACCATCATCCC 59.317 61.111 13.83 0.00 44.79 3.85
179 180 2.516930 GGTGCCACCATCATCCCG 60.517 66.667 9.55 0.00 38.42 5.14
180 181 3.211963 GTGCCACCATCATCCCGC 61.212 66.667 0.00 0.00 0.00 6.13
181 182 4.854924 TGCCACCATCATCCCGCG 62.855 66.667 0.00 0.00 0.00 6.46
198 199 3.474570 GCCCGACCTCTCCTGCAT 61.475 66.667 0.00 0.00 0.00 3.96
199 200 2.818132 CCCGACCTCTCCTGCATC 59.182 66.667 0.00 0.00 0.00 3.91
200 201 1.760086 CCCGACCTCTCCTGCATCT 60.760 63.158 0.00 0.00 0.00 2.90
201 202 1.333636 CCCGACCTCTCCTGCATCTT 61.334 60.000 0.00 0.00 0.00 2.40
202 203 0.539051 CCGACCTCTCCTGCATCTTT 59.461 55.000 0.00 0.00 0.00 2.52
203 204 1.757118 CCGACCTCTCCTGCATCTTTA 59.243 52.381 0.00 0.00 0.00 1.85
204 205 2.482142 CCGACCTCTCCTGCATCTTTAC 60.482 54.545 0.00 0.00 0.00 2.01
205 206 2.428890 CGACCTCTCCTGCATCTTTACT 59.571 50.000 0.00 0.00 0.00 2.24
206 207 3.736433 CGACCTCTCCTGCATCTTTACTG 60.736 52.174 0.00 0.00 0.00 2.74
207 208 2.093235 ACCTCTCCTGCATCTTTACTGC 60.093 50.000 0.00 0.00 40.10 4.40
208 209 2.093288 CCTCTCCTGCATCTTTACTGCA 60.093 50.000 0.00 0.00 46.82 4.41
214 215 2.488952 TGCATCTTTACTGCAACGACA 58.511 42.857 0.00 0.00 46.06 4.35
215 216 2.480037 TGCATCTTTACTGCAACGACAG 59.520 45.455 0.00 0.00 46.06 3.51
216 217 2.726066 GCATCTTTACTGCAACGACAGC 60.726 50.000 0.00 0.00 41.60 4.40
217 218 2.526304 TCTTTACTGCAACGACAGCT 57.474 45.000 0.00 0.00 41.60 4.24
218 219 3.653539 TCTTTACTGCAACGACAGCTA 57.346 42.857 0.00 0.00 41.60 3.32
219 220 3.575630 TCTTTACTGCAACGACAGCTAG 58.424 45.455 0.00 0.00 41.60 3.42
220 221 3.254903 TCTTTACTGCAACGACAGCTAGA 59.745 43.478 0.00 0.00 41.60 2.43
221 222 2.921634 TACTGCAACGACAGCTAGAG 57.078 50.000 0.00 0.00 41.60 2.43
222 223 0.244994 ACTGCAACGACAGCTAGAGG 59.755 55.000 0.00 0.00 41.60 3.69
223 224 0.244994 CTGCAACGACAGCTAGAGGT 59.755 55.000 0.00 0.00 0.00 3.85
225 226 0.243907 GCAACGACAGCTAGAGGTGA 59.756 55.000 15.31 0.00 45.66 4.02
226 227 1.134965 GCAACGACAGCTAGAGGTGAT 60.135 52.381 15.31 0.20 45.66 3.06
227 228 2.534298 CAACGACAGCTAGAGGTGATG 58.466 52.381 15.31 9.05 45.66 3.07
228 229 0.457851 ACGACAGCTAGAGGTGATGC 59.542 55.000 15.31 3.91 45.66 3.91
229 230 0.593518 CGACAGCTAGAGGTGATGCG 60.594 60.000 15.31 11.11 45.66 4.73
230 231 0.457851 GACAGCTAGAGGTGATGCGT 59.542 55.000 15.31 0.00 45.66 5.24
231 232 0.174389 ACAGCTAGAGGTGATGCGTG 59.826 55.000 15.31 0.00 45.66 5.34
232 233 0.457443 CAGCTAGAGGTGATGCGTGA 59.543 55.000 2.49 0.00 45.66 4.35
233 234 0.457851 AGCTAGAGGTGATGCGTGAC 59.542 55.000 0.00 0.00 0.00 3.67
234 235 0.867753 GCTAGAGGTGATGCGTGACG 60.868 60.000 0.00 0.00 0.00 4.35
235 236 0.248661 CTAGAGGTGATGCGTGACGG 60.249 60.000 7.25 0.00 0.00 4.79
236 237 2.279502 TAGAGGTGATGCGTGACGGC 62.280 60.000 7.25 0.00 0.00 5.68
239 240 4.152625 GTGATGCGTGACGGCTGC 62.153 66.667 7.25 0.00 0.00 5.25
281 372 3.968837 ATCCCGTACCCACCTCGCA 62.969 63.158 0.00 0.00 0.00 5.10
311 402 4.681978 GTGACGGCGGCTGGAAGT 62.682 66.667 16.45 0.00 35.30 3.01
318 409 3.710722 CGGCTGGAAGTGGCTCCT 61.711 66.667 0.00 0.00 36.35 3.69
319 410 2.045536 GGCTGGAAGTGGCTCCTG 60.046 66.667 0.00 0.00 36.35 3.86
320 411 2.045536 GCTGGAAGTGGCTCCTGG 60.046 66.667 0.00 0.00 36.35 4.45
321 412 2.045536 CTGGAAGTGGCTCCTGGC 60.046 66.667 0.00 0.00 36.35 4.85
322 413 3.965539 CTGGAAGTGGCTCCTGGCG 62.966 68.421 0.00 0.00 42.94 5.69
323 414 3.706373 GGAAGTGGCTCCTGGCGA 61.706 66.667 0.00 0.00 42.94 5.54
376 490 1.817941 GGCGGCGGCAGATTTTCTA 60.818 57.895 29.41 0.00 42.47 2.10
377 491 1.166531 GGCGGCGGCAGATTTTCTAT 61.167 55.000 29.41 0.00 42.47 1.98
378 492 0.235926 GCGGCGGCAGATTTTCTATC 59.764 55.000 9.78 0.00 39.62 2.08
379 493 1.871080 CGGCGGCAGATTTTCTATCT 58.129 50.000 10.53 0.00 0.00 1.98
383 497 3.006967 GGCGGCAGATTTTCTATCTCCTA 59.993 47.826 3.07 0.00 0.00 2.94
404 518 3.112709 GAGTGTTGAGCGGGCGAC 61.113 66.667 0.00 0.00 0.00 5.19
439 553 2.738521 CTGGAACGTGCTCACCCG 60.739 66.667 0.00 0.00 0.00 5.28
536 651 1.363807 GCAGGTTGACTTTGTGCCC 59.636 57.895 0.00 0.00 0.00 5.36
545 660 3.530910 CTTTGTGCCCGGTCGACCT 62.531 63.158 30.92 0.00 0.00 3.85
546 661 3.818121 TTTGTGCCCGGTCGACCTG 62.818 63.158 30.92 24.70 0.00 4.00
579 696 6.094603 GGCCACATATGTCATAATCATCCTTC 59.905 42.308 5.07 0.00 0.00 3.46
616 733 4.092968 CGGTCATTAAACAGAAGTGGTAGC 59.907 45.833 0.00 0.00 0.00 3.58
651 770 8.755018 CAAAAATTAGAGCAAAAGTGGTACAAG 58.245 33.333 0.00 0.00 44.16 3.16
709 831 3.057876 TGTCACGGTTGTCCAAATTATGC 60.058 43.478 0.00 0.00 0.00 3.14
797 933 9.930693 AAGTTGACTGTTTAAAGATAGTCTAGG 57.069 33.333 19.62 0.00 40.07 3.02
965 1113 2.986413 AGCAGACGTGACGAGCCT 60.986 61.111 13.70 2.52 0.00 4.58
970 1118 1.081641 GACGTGACGAGCCTCGAAA 60.082 57.895 22.80 5.19 43.74 3.46
994 1147 3.753434 CGCTCCACGCTCCAGTCT 61.753 66.667 0.00 0.00 36.13 3.24
998 1151 3.062466 CCACGCTCCAGTCTCCGA 61.062 66.667 0.00 0.00 0.00 4.55
1275 1431 2.352032 CCTCCTCTTCTTCGGCGGT 61.352 63.158 7.21 0.00 0.00 5.68
1357 1513 3.032609 CGAAGCTCATAGGCGCGG 61.033 66.667 8.83 0.00 37.29 6.46
1389 1545 4.265056 GCCAGGGTGTCGGTGGTT 62.265 66.667 0.00 0.00 33.51 3.67
1630 1786 2.124278 GGTTCATCCCGGGCTTCC 60.124 66.667 18.49 9.90 0.00 3.46
1659 1823 1.513586 CCTCGTTCAGGTACGCGAC 60.514 63.158 15.93 6.63 41.16 5.19
1677 1841 1.478105 GACCAATGGCCACCATCTTTC 59.522 52.381 8.16 0.00 44.40 2.62
1679 1843 0.179129 CAATGGCCACCATCTTTCGC 60.179 55.000 8.16 0.00 44.40 4.70
1704 2123 5.105146 TGTTTGAATTATTTTCCCATCCCCG 60.105 40.000 0.00 0.00 0.00 5.73
1746 2165 2.782222 CGTAGGAGCTAGCGGGCAA 61.782 63.158 9.55 0.00 34.17 4.52
1754 2173 0.378610 GCTAGCGGGCAAGTGAATTC 59.621 55.000 0.00 0.00 0.00 2.17
1760 2179 1.750193 GGGCAAGTGAATTCCATCGA 58.250 50.000 2.27 0.00 0.00 3.59
1768 2187 5.470047 AGTGAATTCCATCGACCTATACC 57.530 43.478 2.27 0.00 0.00 2.73
1769 2188 5.148502 AGTGAATTCCATCGACCTATACCT 58.851 41.667 2.27 0.00 0.00 3.08
1770 2189 6.312529 AGTGAATTCCATCGACCTATACCTA 58.687 40.000 2.27 0.00 0.00 3.08
1773 2192 8.189460 GTGAATTCCATCGACCTATACCTATAC 58.811 40.741 2.27 0.00 0.00 1.47
1789 2208 0.968901 ATACCCCAGCGAACGACTCA 60.969 55.000 0.00 0.00 0.00 3.41
1791 2210 2.125912 CCCAGCGAACGACTCAGG 60.126 66.667 0.00 0.00 0.00 3.86
1792 2211 2.636412 CCCAGCGAACGACTCAGGA 61.636 63.158 0.00 0.00 0.00 3.86
1793 2212 1.444553 CCAGCGAACGACTCAGGAC 60.445 63.158 0.00 0.00 0.00 3.85
1794 2213 1.285950 CAGCGAACGACTCAGGACA 59.714 57.895 0.00 0.00 0.00 4.02
1795 2214 1.004277 CAGCGAACGACTCAGGACAC 61.004 60.000 0.00 0.00 0.00 3.67
1796 2215 1.733399 GCGAACGACTCAGGACACC 60.733 63.158 0.00 0.00 0.00 4.16
1797 2216 1.658114 CGAACGACTCAGGACACCA 59.342 57.895 0.00 0.00 0.00 4.17
1798 2217 0.387367 CGAACGACTCAGGACACCAG 60.387 60.000 0.00 0.00 0.00 4.00
1799 2218 0.959553 GAACGACTCAGGACACCAGA 59.040 55.000 0.00 0.00 0.00 3.86
1800 2219 0.962489 AACGACTCAGGACACCAGAG 59.038 55.000 8.31 8.31 41.94 3.35
1815 2234 0.099613 CAGAGTCGAGTCCATGTCGG 59.900 60.000 16.67 0.00 38.02 4.79
1819 2238 0.038526 GTCGAGTCCATGTCGGTTGT 60.039 55.000 4.59 0.00 38.02 3.32
1862 2288 0.865769 CTGTTTTTGTCGACGGAGGG 59.134 55.000 11.62 0.00 0.00 4.30
2042 2862 3.822735 CCATTCAGTGGTGAGACAACATT 59.177 43.478 0.00 0.00 43.44 2.71
2055 2875 2.228822 GACAACATTCATTCAACGGCCT 59.771 45.455 0.00 0.00 0.00 5.19
2085 2905 5.699143 AGCTTCCACCAAGAGCATAATTAT 58.301 37.500 0.00 0.00 38.85 1.28
2094 2914 7.118390 CACCAAGAGCATAATTATGTAGGTAGC 59.882 40.741 23.14 9.78 36.11 3.58
2102 2953 9.474775 GCATAATTATGTAGGTAGCGCGTAACG 62.475 44.444 23.14 0.00 39.31 3.18
2173 3024 7.754851 TTGACTTAGTCGTGATAGGCATATA 57.245 36.000 7.92 0.00 34.95 0.86
2277 3159 9.839185 ATATTGTACCTAATACATAGTCCAGGT 57.161 33.333 0.00 0.00 43.46 4.00
2279 3161 9.839185 ATTGTACCTAATACATAGTCCAGGTAT 57.161 33.333 1.92 0.00 43.46 2.73
2283 3994 7.693132 ACCTAATACATAGTCCAGGTATCGTA 58.307 38.462 0.00 0.00 33.07 3.43
2317 4028 4.090761 TCTTTTCACTCTCAAGCCACAT 57.909 40.909 0.00 0.00 0.00 3.21
2321 4032 2.771089 TCACTCTCAAGCCACATTCAC 58.229 47.619 0.00 0.00 0.00 3.18
2326 4037 4.202357 ACTCTCAAGCCACATTCACACTTA 60.202 41.667 0.00 0.00 0.00 2.24
2329 4040 6.472016 TCTCAAGCCACATTCACACTTAATA 58.528 36.000 0.00 0.00 0.00 0.98
2633 4350 0.918310 AGGAGGGGCTGATCAAAGCT 60.918 55.000 6.87 0.00 43.06 3.74
2689 4406 1.583611 TCCACTCCCCCAGGTACATAT 59.416 52.381 0.00 0.00 0.00 1.78
2747 4464 7.736880 CGAACAAAGTGCAAATTGATGTAATTG 59.263 33.333 17.03 0.00 38.93 2.32
2788 4507 8.146053 TCATAGTTTCTTCTTCACCCAATCTA 57.854 34.615 0.00 0.00 0.00 1.98
2789 4508 8.772250 TCATAGTTTCTTCTTCACCCAATCTAT 58.228 33.333 0.00 0.00 0.00 1.98
3146 4867 3.364964 CGGTTTTCGGAAAGATGGTTGAG 60.365 47.826 3.09 0.00 34.75 3.02
3321 5057 4.989277 TGCTTTCTATACATCCATGGCAT 58.011 39.130 6.96 0.00 0.00 4.40
3322 5058 4.763279 TGCTTTCTATACATCCATGGCATG 59.237 41.667 20.56 20.56 0.00 4.06
3325 5061 5.565455 TTCTATACATCCATGGCATGTGA 57.435 39.130 26.83 20.58 35.95 3.58
3326 5062 5.767277 TCTATACATCCATGGCATGTGAT 57.233 39.130 26.83 21.71 35.95 3.06
3327 5063 5.737860 TCTATACATCCATGGCATGTGATC 58.262 41.667 26.83 0.00 35.95 2.92
3379 5131 5.047847 ACGACCGATGGTAATTGATTGTAG 58.952 41.667 0.00 0.00 35.25 2.74
3427 5179 0.983467 TGAATCCAGCTGCTGTGGTA 59.017 50.000 26.41 10.69 36.37 3.25
3583 5340 1.403780 GCCGTGTTTACTCCGTCAGAT 60.404 52.381 0.00 0.00 0.00 2.90
3594 5351 3.244215 ACTCCGTCAGATGCAAAAGAAGA 60.244 43.478 0.00 0.00 0.00 2.87
3602 5359 7.242783 GTCAGATGCAAAAGAAGAAATCTCTC 58.757 38.462 0.00 0.00 37.42 3.20
3617 5374 8.469309 AGAAATCTCTCAACAAATCTGGAAAA 57.531 30.769 0.00 0.00 0.00 2.29
3712 5595 8.556213 TGTTGTTTATAATGTTGTACTCCCTC 57.444 34.615 0.00 0.00 0.00 4.30
3713 5596 7.608761 TGTTGTTTATAATGTTGTACTCCCTCC 59.391 37.037 0.00 0.00 0.00 4.30
3714 5597 7.260387 TGTTTATAATGTTGTACTCCCTCCA 57.740 36.000 0.00 0.00 0.00 3.86
3715 5598 7.867921 TGTTTATAATGTTGTACTCCCTCCAT 58.132 34.615 0.00 0.00 0.00 3.41
3716 5599 8.333235 TGTTTATAATGTTGTACTCCCTCCATT 58.667 33.333 0.00 0.00 0.00 3.16
3717 5600 8.837389 GTTTATAATGTTGTACTCCCTCCATTC 58.163 37.037 0.00 0.00 0.00 2.67
3718 5601 3.543680 ATGTTGTACTCCCTCCATTCG 57.456 47.619 0.00 0.00 0.00 3.34
3719 5602 2.531771 TGTTGTACTCCCTCCATTCGA 58.468 47.619 0.00 0.00 0.00 3.71
3720 5603 2.901192 TGTTGTACTCCCTCCATTCGAA 59.099 45.455 0.00 0.00 0.00 3.71
3721 5604 3.325425 TGTTGTACTCCCTCCATTCGAAA 59.675 43.478 0.00 0.00 0.00 3.46
3722 5605 4.019681 TGTTGTACTCCCTCCATTCGAAAT 60.020 41.667 0.00 0.00 0.00 2.17
3723 5606 4.837093 TGTACTCCCTCCATTCGAAATT 57.163 40.909 0.00 0.00 0.00 1.82
3724 5607 5.943349 TGTACTCCCTCCATTCGAAATTA 57.057 39.130 0.00 0.00 0.00 1.40
3725 5608 5.667466 TGTACTCCCTCCATTCGAAATTAC 58.333 41.667 0.00 0.00 0.00 1.89
3726 5609 5.424252 TGTACTCCCTCCATTCGAAATTACT 59.576 40.000 0.00 0.00 0.00 2.24
3727 5610 5.024785 ACTCCCTCCATTCGAAATTACTC 57.975 43.478 0.00 0.00 0.00 2.59
3728 5611 4.051922 CTCCCTCCATTCGAAATTACTCG 58.948 47.826 0.00 0.00 40.25 4.18
3729 5612 3.449737 TCCCTCCATTCGAAATTACTCGT 59.550 43.478 0.00 0.00 39.84 4.18
3730 5613 3.802685 CCCTCCATTCGAAATTACTCGTC 59.197 47.826 0.00 0.00 39.84 4.20
3731 5614 3.802685 CCTCCATTCGAAATTACTCGTCC 59.197 47.826 0.00 0.00 39.84 4.79
3732 5615 4.430007 CTCCATTCGAAATTACTCGTCCA 58.570 43.478 0.00 0.00 39.84 4.02
3733 5616 4.823157 TCCATTCGAAATTACTCGTCCAA 58.177 39.130 0.00 0.00 39.84 3.53
3734 5617 4.868171 TCCATTCGAAATTACTCGTCCAAG 59.132 41.667 0.00 0.00 39.84 3.61
3735 5618 4.868171 CCATTCGAAATTACTCGTCCAAGA 59.132 41.667 0.00 0.00 39.84 3.02
3736 5619 5.350365 CCATTCGAAATTACTCGTCCAAGAA 59.650 40.000 0.00 0.00 39.84 2.52
3737 5620 6.128391 CCATTCGAAATTACTCGTCCAAGAAA 60.128 38.462 0.00 0.00 39.84 2.52
3738 5621 7.414098 CCATTCGAAATTACTCGTCCAAGAAAT 60.414 37.037 0.00 0.00 39.84 2.17
3739 5622 6.403333 TCGAAATTACTCGTCCAAGAAATG 57.597 37.500 0.00 0.00 39.84 2.32
3740 5623 6.160684 TCGAAATTACTCGTCCAAGAAATGA 58.839 36.000 0.00 0.00 39.84 2.57
3741 5624 6.647481 TCGAAATTACTCGTCCAAGAAATGAA 59.353 34.615 0.00 0.00 39.84 2.57
3742 5625 7.333423 TCGAAATTACTCGTCCAAGAAATGAAT 59.667 33.333 0.00 0.00 39.84 2.57
3743 5626 7.426456 CGAAATTACTCGTCCAAGAAATGAATG 59.574 37.037 0.00 0.00 34.08 2.67
3744 5627 7.687941 AATTACTCGTCCAAGAAATGAATGT 57.312 32.000 0.00 0.00 0.00 2.71
3745 5628 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
3746 5629 8.964476 ATTACTCGTCCAAGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
3747 5630 6.910536 ACTCGTCCAAGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
3748 5631 6.644347 ACTCGTCCAAGAAATGAATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
3749 5632 7.782049 ACTCGTCCAAGAAATGAATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
3750 5633 7.923344 ACTCGTCCAAGAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
3751 5634 8.007405 TCGTCCAAGAAATGAATGTATCTAGA 57.993 34.615 0.00 0.00 0.00 2.43
3752 5635 8.642432 TCGTCCAAGAAATGAATGTATCTAGAT 58.358 33.333 10.73 10.73 0.00 1.98
3753 5636 8.706936 CGTCCAAGAAATGAATGTATCTAGATG 58.293 37.037 15.79 0.00 0.00 2.90
3754 5637 9.553064 GTCCAAGAAATGAATGTATCTAGATGT 57.447 33.333 15.79 0.00 0.00 3.06
3810 5693 9.453325 TCATTTTTGTAACAAGTAATTCCGAAC 57.547 29.630 0.00 0.00 0.00 3.95
3811 5694 7.895582 TTTTTGTAACAAGTAATTCCGAACG 57.104 32.000 0.00 0.00 0.00 3.95
3812 5695 5.594724 TTGTAACAAGTAATTCCGAACGG 57.405 39.130 6.94 6.94 0.00 4.44
3813 5696 4.880759 TGTAACAAGTAATTCCGAACGGA 58.119 39.130 12.04 12.04 43.52 4.69
3814 5697 4.925054 TGTAACAAGTAATTCCGAACGGAG 59.075 41.667 15.34 5.60 46.06 4.63
3815 5698 2.968675 ACAAGTAATTCCGAACGGAGG 58.031 47.619 15.34 4.52 46.06 4.30
3816 5699 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3817 5700 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3818 5701 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3819 5702 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
3820 5703 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
3821 5704 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
3834 5717 4.205587 GAGGGAGTACGTAGGATTCAAGA 58.794 47.826 0.00 0.00 0.00 3.02
3840 5723 5.014858 AGTACGTAGGATTCAAGAAGGACA 58.985 41.667 0.00 0.00 0.00 4.02
3841 5724 5.657302 AGTACGTAGGATTCAAGAAGGACAT 59.343 40.000 0.00 0.00 0.00 3.06
3843 5726 3.557595 CGTAGGATTCAAGAAGGACATGC 59.442 47.826 0.00 0.00 0.00 4.06
3862 5745 7.363793 GGACATGCCACTTAATCCTATGTTTTT 60.364 37.037 0.00 0.00 36.34 1.94
3871 5754 9.588096 ACTTAATCCTATGTTTTTCTTCTTGGT 57.412 29.630 0.00 0.00 0.00 3.67
3920 5804 0.892755 TAGGGTCACGTACTGCTTGG 59.107 55.000 0.00 0.00 0.00 3.61
3964 5855 2.572104 AGCAACTCTAACCGATTTCCCT 59.428 45.455 0.00 0.00 0.00 4.20
3976 5867 6.812879 ACCGATTTCCCTAAAACACTTTAG 57.187 37.500 0.00 0.00 42.52 1.85
3978 5869 7.173032 ACCGATTTCCCTAAAACACTTTAGAT 58.827 34.615 6.27 0.00 44.70 1.98
3997 5888 9.798885 CTTTAGATGAGTAAACTTTCACTTTCG 57.201 33.333 0.00 0.00 0.00 3.46
3998 5889 6.229561 AGATGAGTAAACTTTCACTTTCGC 57.770 37.500 0.00 0.00 0.00 4.70
3999 5890 5.992217 AGATGAGTAAACTTTCACTTTCGCT 59.008 36.000 0.00 0.00 0.00 4.93
4000 5891 6.483640 AGATGAGTAAACTTTCACTTTCGCTT 59.516 34.615 0.00 0.00 0.00 4.68
4001 5892 6.431198 TGAGTAAACTTTCACTTTCGCTTT 57.569 33.333 0.00 0.00 0.00 3.51
4002 5893 7.542534 TGAGTAAACTTTCACTTTCGCTTTA 57.457 32.000 0.00 0.00 0.00 1.85
4003 5894 7.627340 TGAGTAAACTTTCACTTTCGCTTTAG 58.373 34.615 0.00 0.00 0.00 1.85
4004 5895 7.493320 TGAGTAAACTTTCACTTTCGCTTTAGA 59.507 33.333 0.00 0.00 0.00 2.10
4005 5896 7.628235 AGTAAACTTTCACTTTCGCTTTAGAC 58.372 34.615 0.00 0.00 0.00 2.59
4017 5908 4.479619 TCGCTTTAGACGAGTAACCTTTC 58.520 43.478 0.00 0.00 33.96 2.62
4027 5918 6.922407 AGACGAGTAACCTTTCACTTTTACTC 59.078 38.462 9.37 9.37 43.56 2.59
4028 5919 6.814043 ACGAGTAACCTTTCACTTTTACTCT 58.186 36.000 14.97 3.89 44.28 3.24
4047 5938 3.437213 TCTACTAAACTGCACCTAGCCA 58.563 45.455 0.00 0.00 44.83 4.75
4050 5941 2.372172 ACTAAACTGCACCTAGCCAACT 59.628 45.455 0.00 0.00 44.83 3.16
4058 5949 2.290705 GCACCTAGCCAACTCCCTAAAA 60.291 50.000 0.00 0.00 37.23 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.483013 GCGAAAAAGCCCCTCTGTTTTT 60.483 45.455 0.00 0.00 32.46 1.94
18 19 1.068588 GCGAAAAAGCCCCTCTGTTTT 59.931 47.619 0.00 0.00 32.46 2.43
19 20 0.673985 GCGAAAAAGCCCCTCTGTTT 59.326 50.000 0.00 0.00 34.97 2.83
20 21 0.467290 TGCGAAAAAGCCCCTCTGTT 60.467 50.000 0.00 0.00 36.02 3.16
21 22 0.467290 TTGCGAAAAAGCCCCTCTGT 60.467 50.000 0.00 0.00 36.02 3.41
22 23 0.673437 TTTGCGAAAAAGCCCCTCTG 59.327 50.000 0.00 0.00 36.02 3.35
23 24 1.408969 TTTTGCGAAAAAGCCCCTCT 58.591 45.000 0.00 0.00 36.02 3.69
24 25 1.864711 GTTTTTGCGAAAAAGCCCCTC 59.135 47.619 13.47 0.00 40.71 4.30
25 26 1.484653 AGTTTTTGCGAAAAAGCCCCT 59.515 42.857 13.47 3.67 40.71 4.79
26 27 1.864711 GAGTTTTTGCGAAAAAGCCCC 59.135 47.619 13.47 1.36 40.71 5.80
27 28 2.539688 CAGAGTTTTTGCGAAAAAGCCC 59.460 45.455 13.47 0.30 40.71 5.19
28 29 3.242944 GTCAGAGTTTTTGCGAAAAAGCC 59.757 43.478 13.47 6.10 40.71 4.35
29 30 3.061863 CGTCAGAGTTTTTGCGAAAAAGC 60.062 43.478 13.47 7.34 40.71 3.51
30 31 4.202358 GTCGTCAGAGTTTTTGCGAAAAAG 59.798 41.667 13.47 4.94 40.71 2.27
31 32 4.092816 GTCGTCAGAGTTTTTGCGAAAAA 58.907 39.130 13.47 7.87 36.56 1.94
32 33 3.676540 GTCGTCAGAGTTTTTGCGAAAA 58.323 40.909 7.81 7.81 32.53 2.29
33 34 2.285371 CGTCGTCAGAGTTTTTGCGAAA 60.285 45.455 0.00 0.00 0.00 3.46
34 35 1.256895 CGTCGTCAGAGTTTTTGCGAA 59.743 47.619 0.00 0.00 0.00 4.70
35 36 0.850217 CGTCGTCAGAGTTTTTGCGA 59.150 50.000 0.00 0.00 0.00 5.10
36 37 0.575390 ACGTCGTCAGAGTTTTTGCG 59.425 50.000 0.00 0.00 0.00 4.85
37 38 2.408110 CGTACGTCGTCAGAGTTTTTGC 60.408 50.000 7.22 0.00 34.52 3.68
38 39 3.038017 TCGTACGTCGTCAGAGTTTTTG 58.962 45.455 16.05 0.00 40.80 2.44
39 40 3.038710 GTCGTACGTCGTCAGAGTTTTT 58.961 45.455 16.05 0.00 40.80 1.94
40 41 2.603173 GGTCGTACGTCGTCAGAGTTTT 60.603 50.000 16.05 0.00 40.80 2.43
41 42 1.069636 GGTCGTACGTCGTCAGAGTTT 60.070 52.381 16.05 0.00 40.80 2.66
42 43 0.514691 GGTCGTACGTCGTCAGAGTT 59.485 55.000 16.05 0.00 40.80 3.01
43 44 0.601046 TGGTCGTACGTCGTCAGAGT 60.601 55.000 16.05 0.00 40.80 3.24
44 45 0.094901 CTGGTCGTACGTCGTCAGAG 59.905 60.000 16.05 0.00 40.78 3.35
45 46 0.319813 TCTGGTCGTACGTCGTCAGA 60.320 55.000 16.05 18.41 42.68 3.27
46 47 0.514255 TTCTGGTCGTACGTCGTCAG 59.486 55.000 16.05 16.66 40.24 3.51
47 48 0.514255 CTTCTGGTCGTACGTCGTCA 59.486 55.000 16.05 8.50 40.80 4.35
48 49 0.792356 GCTTCTGGTCGTACGTCGTC 60.792 60.000 16.05 4.75 40.80 4.20
49 50 1.208614 GCTTCTGGTCGTACGTCGT 59.791 57.895 16.05 2.21 40.80 4.34
50 51 0.793478 CTGCTTCTGGTCGTACGTCG 60.793 60.000 16.05 0.00 41.41 5.12
51 52 0.240411 ACTGCTTCTGGTCGTACGTC 59.760 55.000 16.05 9.80 0.00 4.34
52 53 1.527034 TACTGCTTCTGGTCGTACGT 58.473 50.000 16.05 0.00 0.00 3.57
53 54 2.624316 TTACTGCTTCTGGTCGTACG 57.376 50.000 9.53 9.53 0.00 3.67
54 55 4.842139 CAATTACTGCTTCTGGTCGTAC 57.158 45.455 0.00 0.00 0.00 3.67
67 68 9.956720 CTTTCCCTAATGATAAAGCAATTACTG 57.043 33.333 0.00 0.00 0.00 2.74
68 69 9.920946 TCTTTCCCTAATGATAAAGCAATTACT 57.079 29.630 0.00 0.00 0.00 2.24
73 74 9.354673 CCTAATCTTTCCCTAATGATAAAGCAA 57.645 33.333 0.00 0.00 31.24 3.91
74 75 7.944554 CCCTAATCTTTCCCTAATGATAAAGCA 59.055 37.037 0.00 0.00 31.24 3.91
75 76 7.094162 GCCCTAATCTTTCCCTAATGATAAAGC 60.094 40.741 0.00 0.00 31.24 3.51
76 77 7.394641 GGCCCTAATCTTTCCCTAATGATAAAG 59.605 40.741 0.00 0.00 31.24 1.85
77 78 7.238710 GGCCCTAATCTTTCCCTAATGATAAA 58.761 38.462 0.00 0.00 31.24 1.40
78 79 6.240468 GGGCCCTAATCTTTCCCTAATGATAA 60.240 42.308 17.04 0.00 34.19 1.75
79 80 5.253096 GGGCCCTAATCTTTCCCTAATGATA 59.747 44.000 17.04 0.00 34.19 2.15
80 81 4.044698 GGGCCCTAATCTTTCCCTAATGAT 59.955 45.833 17.04 0.00 34.19 2.45
81 82 3.397955 GGGCCCTAATCTTTCCCTAATGA 59.602 47.826 17.04 0.00 34.19 2.57
82 83 3.140144 TGGGCCCTAATCTTTCCCTAATG 59.860 47.826 25.70 0.00 37.83 1.90
83 84 3.399305 CTGGGCCCTAATCTTTCCCTAAT 59.601 47.826 25.70 0.00 37.83 1.73
84 85 2.783510 CTGGGCCCTAATCTTTCCCTAA 59.216 50.000 25.70 0.00 37.83 2.69
85 86 2.418669 CTGGGCCCTAATCTTTCCCTA 58.581 52.381 25.70 0.00 37.83 3.53
86 87 1.226311 CTGGGCCCTAATCTTTCCCT 58.774 55.000 25.70 0.00 37.83 4.20
87 88 0.468214 GCTGGGCCCTAATCTTTCCC 60.468 60.000 25.70 0.00 37.49 3.97
88 89 0.819666 CGCTGGGCCCTAATCTTTCC 60.820 60.000 25.70 0.00 0.00 3.13
89 90 0.819666 CCGCTGGGCCCTAATCTTTC 60.820 60.000 25.70 1.85 0.00 2.62
90 91 1.227383 CCGCTGGGCCCTAATCTTT 59.773 57.895 25.70 0.00 0.00 2.52
91 92 2.001269 ACCGCTGGGCCCTAATCTT 61.001 57.895 25.70 0.00 36.48 2.40
92 93 2.366972 ACCGCTGGGCCCTAATCT 60.367 61.111 25.70 0.00 36.48 2.40
93 94 2.203209 CACCGCTGGGCCCTAATC 60.203 66.667 25.70 8.20 36.48 1.75
94 95 3.809013 CCACCGCTGGGCCCTAAT 61.809 66.667 25.70 0.36 36.48 1.73
126 127 3.918253 TTGCGCATCACCTCCACCC 62.918 63.158 12.75 0.00 0.00 4.61
128 129 1.364626 CTCTTGCGCATCACCTCCAC 61.365 60.000 12.75 0.00 0.00 4.02
130 131 1.078848 ACTCTTGCGCATCACCTCC 60.079 57.895 12.75 0.00 0.00 4.30
141 142 0.867746 TGATGACGCAACACTCTTGC 59.132 50.000 0.00 0.00 41.71 4.01
145 146 1.129251 CACCATGATGACGCAACACTC 59.871 52.381 0.00 0.00 0.00 3.51
148 149 1.585267 GGCACCATGATGACGCAACA 61.585 55.000 0.00 0.00 0.00 3.33
149 150 1.137404 GGCACCATGATGACGCAAC 59.863 57.895 0.00 0.00 0.00 4.17
150 151 1.303155 TGGCACCATGATGACGCAA 60.303 52.632 0.00 0.00 0.00 4.85
151 152 2.039974 GTGGCACCATGATGACGCA 61.040 57.895 0.01 0.00 38.07 5.24
152 153 2.764314 GGTGGCACCATGATGACGC 61.764 63.158 31.26 0.00 38.42 5.19
153 154 1.377072 TGGTGGCACCATGATGACG 60.377 57.895 34.67 0.00 44.79 4.35
154 155 4.740922 TGGTGGCACCATGATGAC 57.259 55.556 34.67 7.30 44.79 3.06
162 163 2.516930 CGGGATGATGGTGGCACC 60.517 66.667 29.75 29.75 39.22 5.01
163 164 3.211963 GCGGGATGATGGTGGCAC 61.212 66.667 9.70 9.70 0.00 5.01
164 165 4.854924 CGCGGGATGATGGTGGCA 62.855 66.667 0.00 0.00 0.00 4.92
181 182 3.453070 GATGCAGGAGAGGTCGGGC 62.453 68.421 0.00 0.00 0.00 6.13
182 183 1.333636 AAGATGCAGGAGAGGTCGGG 61.334 60.000 0.00 0.00 0.00 5.14
183 184 0.539051 AAAGATGCAGGAGAGGTCGG 59.461 55.000 0.00 0.00 0.00 4.79
184 185 2.428890 AGTAAAGATGCAGGAGAGGTCG 59.571 50.000 0.00 0.00 0.00 4.79
185 186 3.791245 CAGTAAAGATGCAGGAGAGGTC 58.209 50.000 0.00 0.00 0.00 3.85
186 187 2.093235 GCAGTAAAGATGCAGGAGAGGT 60.093 50.000 0.00 0.00 43.31 3.85
187 188 2.559440 GCAGTAAAGATGCAGGAGAGG 58.441 52.381 0.00 0.00 43.31 3.69
195 196 2.726066 GCTGTCGTTGCAGTAAAGATGC 60.726 50.000 0.00 0.00 44.11 3.91
196 197 2.738846 AGCTGTCGTTGCAGTAAAGATG 59.261 45.455 0.00 0.00 38.65 2.90
197 198 3.045601 AGCTGTCGTTGCAGTAAAGAT 57.954 42.857 0.00 0.00 38.65 2.40
198 199 2.526304 AGCTGTCGTTGCAGTAAAGA 57.474 45.000 0.00 0.00 38.65 2.52
199 200 3.575630 TCTAGCTGTCGTTGCAGTAAAG 58.424 45.455 0.00 0.00 38.65 1.85
200 201 3.575630 CTCTAGCTGTCGTTGCAGTAAA 58.424 45.455 0.00 0.00 38.65 2.01
201 202 2.094700 CCTCTAGCTGTCGTTGCAGTAA 60.095 50.000 0.00 0.00 38.65 2.24
202 203 1.472878 CCTCTAGCTGTCGTTGCAGTA 59.527 52.381 0.00 0.00 38.65 2.74
203 204 0.244994 CCTCTAGCTGTCGTTGCAGT 59.755 55.000 0.00 0.00 38.65 4.40
204 205 0.244994 ACCTCTAGCTGTCGTTGCAG 59.755 55.000 0.00 0.00 39.37 4.41
205 206 0.038251 CACCTCTAGCTGTCGTTGCA 60.038 55.000 0.00 0.00 0.00 4.08
206 207 0.243907 TCACCTCTAGCTGTCGTTGC 59.756 55.000 0.00 0.00 0.00 4.17
207 208 2.534298 CATCACCTCTAGCTGTCGTTG 58.466 52.381 0.00 0.00 0.00 4.10
208 209 1.134965 GCATCACCTCTAGCTGTCGTT 60.135 52.381 0.00 0.00 0.00 3.85
209 210 0.457851 GCATCACCTCTAGCTGTCGT 59.542 55.000 0.00 0.00 0.00 4.34
210 211 0.593518 CGCATCACCTCTAGCTGTCG 60.594 60.000 0.00 0.00 0.00 4.35
211 212 0.457851 ACGCATCACCTCTAGCTGTC 59.542 55.000 0.00 0.00 0.00 3.51
212 213 0.174389 CACGCATCACCTCTAGCTGT 59.826 55.000 0.00 0.00 0.00 4.40
213 214 0.457443 TCACGCATCACCTCTAGCTG 59.543 55.000 0.00 0.00 0.00 4.24
214 215 0.457851 GTCACGCATCACCTCTAGCT 59.542 55.000 0.00 0.00 0.00 3.32
215 216 0.867753 CGTCACGCATCACCTCTAGC 60.868 60.000 0.00 0.00 0.00 3.42
216 217 0.248661 CCGTCACGCATCACCTCTAG 60.249 60.000 0.00 0.00 0.00 2.43
217 218 1.807226 CCGTCACGCATCACCTCTA 59.193 57.895 0.00 0.00 0.00 2.43
218 219 2.573869 CCGTCACGCATCACCTCT 59.426 61.111 0.00 0.00 0.00 3.69
219 220 3.188786 GCCGTCACGCATCACCTC 61.189 66.667 0.00 0.00 0.00 3.85
220 221 3.695606 AGCCGTCACGCATCACCT 61.696 61.111 0.00 0.00 0.00 4.00
221 222 3.490759 CAGCCGTCACGCATCACC 61.491 66.667 0.00 0.00 0.00 4.02
222 223 4.152625 GCAGCCGTCACGCATCAC 62.153 66.667 0.00 0.00 0.00 3.06
223 224 4.377708 AGCAGCCGTCACGCATCA 62.378 61.111 0.00 0.00 0.00 3.07
224 225 3.857854 CAGCAGCCGTCACGCATC 61.858 66.667 0.00 0.00 0.00 3.91
235 236 3.138798 CCATGGTGAGGCAGCAGC 61.139 66.667 2.57 0.00 45.01 5.25
269 270 1.146041 GATGCATGCGAGGTGGGTA 59.854 57.895 14.09 0.00 0.00 3.69
270 271 2.124570 GATGCATGCGAGGTGGGT 60.125 61.111 14.09 0.00 0.00 4.51
295 386 4.680237 CACTTCCAGCCGCCGTCA 62.680 66.667 0.00 0.00 0.00 4.35
302 393 2.045536 CAGGAGCCACTTCCAGCC 60.046 66.667 0.00 0.00 39.84 4.85
309 400 3.699894 CTGTCGCCAGGAGCCACT 61.700 66.667 0.00 0.00 38.78 4.00
317 408 4.154347 GCCTCCTCCTGTCGCCAG 62.154 72.222 0.00 0.00 38.50 4.85
320 411 4.500116 GTCGCCTCCTCCTGTCGC 62.500 72.222 0.00 0.00 0.00 5.19
321 412 4.180946 CGTCGCCTCCTCCTGTCG 62.181 72.222 0.00 0.00 0.00 4.35
322 413 4.500116 GCGTCGCCTCCTCCTGTC 62.500 72.222 5.75 0.00 0.00 3.51
324 415 4.200283 GAGCGTCGCCTCCTCCTG 62.200 72.222 14.86 0.00 0.00 3.86
376 490 2.164624 GCTCAACACTCACGTAGGAGAT 59.835 50.000 9.68 0.00 38.30 2.75
377 491 1.540267 GCTCAACACTCACGTAGGAGA 59.460 52.381 9.68 0.00 38.30 3.71
378 492 1.729472 CGCTCAACACTCACGTAGGAG 60.729 57.143 1.56 1.56 40.79 3.69
379 493 0.240145 CGCTCAACACTCACGTAGGA 59.760 55.000 0.00 0.00 0.00 2.94
383 497 2.029073 CCCGCTCAACACTCACGT 59.971 61.111 0.00 0.00 0.00 4.49
404 518 0.249741 AGTTCGTGGGTTCGGTCAAG 60.250 55.000 0.00 0.00 0.00 3.02
472 587 2.734755 TGGGATCCACATGTCATTCC 57.265 50.000 15.23 0.00 0.00 3.01
486 601 4.794311 TGACCATTATGACATGTGGGAT 57.206 40.909 19.77 0.00 36.05 3.85
547 662 2.906897 CATATGTGGCCCACCCGC 60.907 66.667 12.25 0.00 44.67 6.13
579 696 8.664798 TGTTTAATGACCGATTGAGTAGAAATG 58.335 33.333 0.00 0.00 0.00 2.32
584 701 7.545965 ACTTCTGTTTAATGACCGATTGAGTAG 59.454 37.037 0.00 0.00 0.00 2.57
586 703 6.147821 CACTTCTGTTTAATGACCGATTGAGT 59.852 38.462 0.00 0.00 0.00 3.41
623 740 6.233905 ACCACTTTTGCTCTAATTTTTGGT 57.766 33.333 0.00 0.00 0.00 3.67
687 809 3.057876 GCATAATTTGGACAACCGTGACA 60.058 43.478 0.00 0.00 39.42 3.58
771 906 9.930693 CCTAGACTATCTTTAAACAGTCAACTT 57.069 33.333 16.44 4.72 39.90 2.66
796 932 8.942338 AATTTCTACAACAAACTTTTCCTTCC 57.058 30.769 0.00 0.00 0.00 3.46
797 933 9.031360 GGAATTTCTACAACAAACTTTTCCTTC 57.969 33.333 0.00 0.00 0.00 3.46
800 936 7.042725 GCAGGAATTTCTACAACAAACTTTTCC 60.043 37.037 0.00 0.00 0.00 3.13
998 1151 2.809601 GCGTCGACGAAGGCATGT 60.810 61.111 39.74 0.00 43.02 3.21
1254 1410 1.595993 CGCCGAAGAAGAGGAGGTCA 61.596 60.000 0.00 0.00 0.00 4.02
1659 1823 0.457035 CGAAAGATGGTGGCCATTGG 59.543 55.000 9.72 0.00 45.26 3.16
1677 1841 5.519927 GGATGGGAAAATAATTCAAACAGCG 59.480 40.000 0.00 0.00 0.00 5.18
1679 1843 6.348498 GGGGATGGGAAAATAATTCAAACAG 58.652 40.000 0.00 0.00 0.00 3.16
1704 2123 2.859806 GCCAAACCATGCGAATATCTGC 60.860 50.000 0.00 0.00 0.00 4.26
1746 2165 5.148502 AGGTATAGGTCGATGGAATTCACT 58.851 41.667 7.93 0.00 0.00 3.41
1754 2173 4.213513 GGGGTATAGGTATAGGTCGATGG 58.786 52.174 0.00 0.00 0.00 3.51
1760 2179 2.651334 TCGCTGGGGTATAGGTATAGGT 59.349 50.000 0.00 0.00 0.00 3.08
1768 2187 1.001597 GAGTCGTTCGCTGGGGTATAG 60.002 57.143 0.00 0.00 0.00 1.31
1769 2188 1.027357 GAGTCGTTCGCTGGGGTATA 58.973 55.000 0.00 0.00 0.00 1.47
1770 2189 0.968901 TGAGTCGTTCGCTGGGGTAT 60.969 55.000 0.00 0.00 0.00 2.73
1773 2192 2.125912 CTGAGTCGTTCGCTGGGG 60.126 66.667 0.00 0.00 0.00 4.96
1789 2208 0.609681 GGACTCGACTCTGGTGTCCT 60.610 60.000 9.78 0.00 42.63 3.85
1791 2210 1.135257 CATGGACTCGACTCTGGTGTC 60.135 57.143 0.00 0.00 0.00 3.67
1792 2211 0.891373 CATGGACTCGACTCTGGTGT 59.109 55.000 0.00 0.00 0.00 4.16
1793 2212 0.891373 ACATGGACTCGACTCTGGTG 59.109 55.000 0.00 0.00 0.00 4.17
1794 2213 1.178276 GACATGGACTCGACTCTGGT 58.822 55.000 0.00 0.00 0.00 4.00
1795 2214 0.099613 CGACATGGACTCGACTCTGG 59.900 60.000 0.00 0.00 32.65 3.86
1796 2215 0.099613 CCGACATGGACTCGACTCTG 59.900 60.000 5.83 0.00 42.00 3.35
1797 2216 0.322636 ACCGACATGGACTCGACTCT 60.323 55.000 5.83 0.00 42.00 3.24
1798 2217 0.526662 AACCGACATGGACTCGACTC 59.473 55.000 5.83 0.00 42.00 3.36
1799 2218 0.243907 CAACCGACATGGACTCGACT 59.756 55.000 5.83 0.00 42.00 4.18
1800 2219 0.038526 ACAACCGACATGGACTCGAC 60.039 55.000 5.83 0.00 42.00 4.20
1801 2220 0.242825 GACAACCGACATGGACTCGA 59.757 55.000 5.83 0.00 42.00 4.04
1802 2221 0.038618 TGACAACCGACATGGACTCG 60.039 55.000 0.00 0.00 42.00 4.18
1815 2234 2.771089 TGGCTGAGTTCATCTGACAAC 58.229 47.619 0.00 0.00 41.55 3.32
1819 2238 1.699083 TGGTTGGCTGAGTTCATCTGA 59.301 47.619 0.00 0.00 0.00 3.27
1899 2719 2.033299 GCGCGGTTATGGTAGTACTGTA 59.967 50.000 8.83 0.00 0.00 2.74
1900 2720 1.202336 GCGCGGTTATGGTAGTACTGT 60.202 52.381 8.83 0.00 0.00 3.55
1901 2721 1.202325 TGCGCGGTTATGGTAGTACTG 60.202 52.381 8.83 0.00 0.00 2.74
1902 2722 1.105457 TGCGCGGTTATGGTAGTACT 58.895 50.000 8.83 0.00 0.00 2.73
1903 2723 1.589779 GTTGCGCGGTTATGGTAGTAC 59.410 52.381 8.83 0.00 0.00 2.73
2005 2825 4.776322 TGGTTGGCGGCTCGATGG 62.776 66.667 11.43 0.00 0.00 3.51
2031 2851 3.058293 GCCGTTGAATGAATGTTGTCTCA 60.058 43.478 0.00 0.00 0.00 3.27
2038 2858 1.086696 CGAGGCCGTTGAATGAATGT 58.913 50.000 0.00 0.00 0.00 2.71
2042 2862 2.435938 GGCGAGGCCGTTGAATGA 60.436 61.111 0.00 0.00 39.62 2.57
2055 2875 0.107703 CTTGGTGGAAGCTATGGCGA 60.108 55.000 0.00 0.00 44.37 5.54
2085 2905 0.096976 GACGTTACGCGCTACCTACA 59.903 55.000 5.73 0.00 46.11 2.74
2102 2953 8.841444 TTCGTTATTTATGTAGGACTAACGAC 57.159 34.615 13.05 0.00 45.59 4.34
2253 3135 9.839185 ATACCTGGACTATGTATTAGGTACAAT 57.161 33.333 0.00 0.00 45.87 2.71
2254 3136 9.305555 GATACCTGGACTATGTATTAGGTACAA 57.694 37.037 0.00 0.00 45.87 2.41
2257 3139 7.693132 ACGATACCTGGACTATGTATTAGGTA 58.307 38.462 0.00 0.00 42.87 3.08
2258 3140 6.550163 ACGATACCTGGACTATGTATTAGGT 58.450 40.000 0.00 0.00 41.17 3.08
2259 3141 7.828223 ACTACGATACCTGGACTATGTATTAGG 59.172 40.741 0.00 0.00 31.68 2.69
2260 3142 8.789825 ACTACGATACCTGGACTATGTATTAG 57.210 38.462 0.00 0.00 0.00 1.73
2261 3143 9.658799 GTACTACGATACCTGGACTATGTATTA 57.341 37.037 0.00 0.00 0.00 0.98
2262 3144 8.159447 TGTACTACGATACCTGGACTATGTATT 58.841 37.037 0.00 0.00 0.00 1.89
2263 3145 7.683578 TGTACTACGATACCTGGACTATGTAT 58.316 38.462 0.00 0.00 0.00 2.29
2264 3146 7.066307 TGTACTACGATACCTGGACTATGTA 57.934 40.000 0.00 0.00 0.00 2.29
2265 3147 5.933617 TGTACTACGATACCTGGACTATGT 58.066 41.667 0.00 0.00 0.00 2.29
2266 3148 6.709397 TCTTGTACTACGATACCTGGACTATG 59.291 42.308 0.00 0.00 0.00 2.23
2268 3150 6.239217 TCTTGTACTACGATACCTGGACTA 57.761 41.667 0.00 0.00 0.00 2.59
2269 3151 5.108187 TCTTGTACTACGATACCTGGACT 57.892 43.478 0.00 0.00 0.00 3.85
2270 3152 6.388435 AATCTTGTACTACGATACCTGGAC 57.612 41.667 0.00 0.00 0.00 4.02
2272 3154 8.794553 AGATTAATCTTGTACTACGATACCTGG 58.205 37.037 12.37 0.00 31.97 4.45
2311 4022 9.712305 AGTATATCTATTAAGTGTGAATGTGGC 57.288 33.333 0.00 0.00 0.00 5.01
2454 4170 8.548721 CAAAGTCTCTAATTAAACGTGACAACT 58.451 33.333 0.00 0.00 0.00 3.16
2473 4189 7.310237 CCATCCATTTCTTTTGATCCAAAGTCT 60.310 37.037 16.48 3.25 34.72 3.24
2560 4277 7.065563 ACTGCAGCAAAATGTTTTATTTGTGAA 59.934 29.630 15.27 0.00 38.48 3.18
2633 4350 4.376223 TGTCTTTGTTCCCCAGGGATATA 58.624 43.478 7.25 0.00 44.74 0.86
2689 4406 7.311092 TGTTTGTCAGGAAAGTTAGAGGATA 57.689 36.000 0.00 0.00 0.00 2.59
2708 4425 3.672867 ACTTTGTTCGTTGTGCTTGTTTG 59.327 39.130 0.00 0.00 0.00 2.93
2788 4507 0.041535 TTGCTGAAAGATGGGGGCAT 59.958 50.000 0.00 0.00 34.07 4.40
2789 4508 0.612732 CTTGCTGAAAGATGGGGGCA 60.613 55.000 0.00 0.00 38.24 5.36
3126 4847 5.432885 TTCTCAACCATCTTTCCGAAAAC 57.567 39.130 0.00 0.00 0.00 2.43
3321 5057 3.072330 TCCAGTTGGTAGCAAAGATCACA 59.928 43.478 9.30 0.00 36.34 3.58
3322 5058 3.674997 TCCAGTTGGTAGCAAAGATCAC 58.325 45.455 9.30 0.00 36.34 3.06
3325 5061 4.640771 TCTTCCAGTTGGTAGCAAAGAT 57.359 40.909 9.30 0.00 33.22 2.40
3326 5062 4.134563 GTTCTTCCAGTTGGTAGCAAAGA 58.865 43.478 9.30 5.44 33.22 2.52
3327 5063 3.882888 TGTTCTTCCAGTTGGTAGCAAAG 59.117 43.478 9.30 5.21 33.22 2.77
3379 5131 4.192317 GTCCTACTGGATCCACAATTCAC 58.808 47.826 11.44 0.00 45.29 3.18
3408 5160 0.983467 TACCACAGCAGCTGGATTCA 59.017 50.000 26.38 4.71 35.51 2.57
3433 5185 9.420118 TGGCCAGATTTTATGACATTATTAACT 57.580 29.630 0.00 0.00 0.00 2.24
3438 5190 7.510001 TCCAATGGCCAGATTTTATGACATTAT 59.490 33.333 13.05 0.00 0.00 1.28
3583 5340 6.698008 TGTTGAGAGATTTCTTCTTTTGCA 57.302 33.333 0.00 0.00 33.74 4.08
3594 5351 8.355913 GTCTTTTCCAGATTTGTTGAGAGATTT 58.644 33.333 0.00 0.00 32.60 2.17
3602 5359 7.141363 CCACTTAGTCTTTTCCAGATTTGTTG 58.859 38.462 0.00 0.00 32.60 3.33
3617 5374 5.627182 ATGAGATTGATGCCACTTAGTCT 57.373 39.130 0.00 0.00 0.00 3.24
3690 5573 7.260387 TGGAGGGAGTACAACATTATAAACA 57.740 36.000 0.00 0.00 0.00 2.83
3707 5590 3.449737 ACGAGTAATTTCGAATGGAGGGA 59.550 43.478 6.54 0.00 43.03 4.20
3708 5591 3.793559 ACGAGTAATTTCGAATGGAGGG 58.206 45.455 6.54 0.00 43.03 4.30
3709 5592 3.802685 GGACGAGTAATTTCGAATGGAGG 59.197 47.826 6.54 0.00 43.03 4.30
3710 5593 4.430007 TGGACGAGTAATTTCGAATGGAG 58.570 43.478 6.54 0.00 43.03 3.86
3711 5594 4.459390 TGGACGAGTAATTTCGAATGGA 57.541 40.909 6.54 0.00 43.03 3.41
3712 5595 4.868171 TCTTGGACGAGTAATTTCGAATGG 59.132 41.667 6.54 0.00 43.03 3.16
3713 5596 6.403333 TTCTTGGACGAGTAATTTCGAATG 57.597 37.500 6.54 0.00 43.03 2.67
3714 5597 7.333423 TCATTTCTTGGACGAGTAATTTCGAAT 59.667 33.333 6.54 0.00 43.03 3.34
3715 5598 6.647481 TCATTTCTTGGACGAGTAATTTCGAA 59.353 34.615 6.54 0.00 43.03 3.71
3716 5599 6.160684 TCATTTCTTGGACGAGTAATTTCGA 58.839 36.000 6.54 0.00 43.03 3.71
3717 5600 6.403333 TCATTTCTTGGACGAGTAATTTCG 57.597 37.500 0.00 0.00 45.70 3.46
3718 5601 8.237267 ACATTCATTTCTTGGACGAGTAATTTC 58.763 33.333 0.00 0.00 0.00 2.17
3719 5602 8.110860 ACATTCATTTCTTGGACGAGTAATTT 57.889 30.769 0.00 0.00 0.00 1.82
3720 5603 7.687941 ACATTCATTTCTTGGACGAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
3721 5604 8.964476 ATACATTCATTTCTTGGACGAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
3722 5605 8.258007 AGATACATTCATTTCTTGGACGAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
3723 5606 7.782049 AGATACATTCATTTCTTGGACGAGTA 58.218 34.615 0.00 0.00 0.00 2.59
3724 5607 6.644347 AGATACATTCATTTCTTGGACGAGT 58.356 36.000 0.00 0.00 0.00 4.18
3725 5608 8.138074 TCTAGATACATTCATTTCTTGGACGAG 58.862 37.037 0.00 0.00 0.00 4.18
3726 5609 8.007405 TCTAGATACATTCATTTCTTGGACGA 57.993 34.615 0.00 0.00 0.00 4.20
3727 5610 8.706936 CATCTAGATACATTCATTTCTTGGACG 58.293 37.037 4.54 0.00 0.00 4.79
3728 5611 9.553064 ACATCTAGATACATTCATTTCTTGGAC 57.447 33.333 4.54 0.00 0.00 4.02
3784 5667 9.453325 GTTCGGAATTACTTGTTACAAAAATGA 57.547 29.630 0.00 0.00 0.00 2.57
3785 5668 8.414173 CGTTCGGAATTACTTGTTACAAAAATG 58.586 33.333 0.00 0.00 0.00 2.32
3786 5669 7.592164 CCGTTCGGAATTACTTGTTACAAAAAT 59.408 33.333 5.19 0.00 0.00 1.82
3787 5670 6.911511 CCGTTCGGAATTACTTGTTACAAAAA 59.088 34.615 5.19 0.00 0.00 1.94
3788 5671 6.259608 TCCGTTCGGAATTACTTGTTACAAAA 59.740 34.615 11.66 0.00 0.00 2.44
3789 5672 5.757320 TCCGTTCGGAATTACTTGTTACAAA 59.243 36.000 11.66 0.00 0.00 2.83
3790 5673 5.295950 TCCGTTCGGAATTACTTGTTACAA 58.704 37.500 11.66 0.00 0.00 2.41
3791 5674 4.880759 TCCGTTCGGAATTACTTGTTACA 58.119 39.130 11.66 0.00 0.00 2.41
3792 5675 4.328169 CCTCCGTTCGGAATTACTTGTTAC 59.672 45.833 14.79 0.00 33.41 2.50
3793 5676 4.497300 CCTCCGTTCGGAATTACTTGTTA 58.503 43.478 14.79 0.00 33.41 2.41
3794 5677 3.332034 CCTCCGTTCGGAATTACTTGTT 58.668 45.455 14.79 0.00 33.41 2.83
3795 5678 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3796 5679 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3797 5680 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3798 5681 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3799 5682 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3800 5683 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3801 5684 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
3802 5685 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
3803 5686 1.308069 CGTACTCCCTCCGTTCGGAA 61.308 60.000 14.79 0.04 33.41 4.30
3804 5687 1.746615 CGTACTCCCTCCGTTCGGA 60.747 63.158 13.34 13.34 0.00 4.55
3805 5688 0.744414 TACGTACTCCCTCCGTTCGG 60.744 60.000 4.74 4.74 36.12 4.30
3806 5689 0.654683 CTACGTACTCCCTCCGTTCG 59.345 60.000 0.00 0.00 36.12 3.95
3807 5690 1.020437 CCTACGTACTCCCTCCGTTC 58.980 60.000 0.00 0.00 36.12 3.95
3808 5691 0.620556 TCCTACGTACTCCCTCCGTT 59.379 55.000 0.00 0.00 36.12 4.44
3809 5692 0.842635 ATCCTACGTACTCCCTCCGT 59.157 55.000 0.00 0.00 38.53 4.69
3810 5693 1.878734 GAATCCTACGTACTCCCTCCG 59.121 57.143 0.00 0.00 0.00 4.63
3811 5694 2.941480 TGAATCCTACGTACTCCCTCC 58.059 52.381 0.00 0.00 0.00 4.30
3812 5695 4.205587 TCTTGAATCCTACGTACTCCCTC 58.794 47.826 0.00 0.00 0.00 4.30
3813 5696 4.246712 TCTTGAATCCTACGTACTCCCT 57.753 45.455 0.00 0.00 0.00 4.20
3814 5697 4.202131 CCTTCTTGAATCCTACGTACTCCC 60.202 50.000 0.00 0.00 0.00 4.30
3815 5698 4.643784 TCCTTCTTGAATCCTACGTACTCC 59.356 45.833 0.00 0.00 0.00 3.85
3816 5699 5.125097 TGTCCTTCTTGAATCCTACGTACTC 59.875 44.000 0.00 0.00 0.00 2.59
3817 5700 5.014858 TGTCCTTCTTGAATCCTACGTACT 58.985 41.667 0.00 0.00 0.00 2.73
3818 5701 5.320549 TGTCCTTCTTGAATCCTACGTAC 57.679 43.478 0.00 0.00 0.00 3.67
3819 5702 5.681437 GCATGTCCTTCTTGAATCCTACGTA 60.681 44.000 0.00 0.00 0.00 3.57
3820 5703 4.759782 CATGTCCTTCTTGAATCCTACGT 58.240 43.478 0.00 0.00 0.00 3.57
3821 5704 3.557595 GCATGTCCTTCTTGAATCCTACG 59.442 47.826 0.00 0.00 0.00 3.51
3834 5717 5.103940 ACATAGGATTAAGTGGCATGTCCTT 60.104 40.000 12.18 0.33 37.31 3.36
3840 5723 7.961326 AGAAAAACATAGGATTAAGTGGCAT 57.039 32.000 0.00 0.00 0.00 4.40
3841 5724 7.669722 AGAAGAAAAACATAGGATTAAGTGGCA 59.330 33.333 0.00 0.00 0.00 4.92
3843 5726 9.846248 CAAGAAGAAAAACATAGGATTAAGTGG 57.154 33.333 0.00 0.00 0.00 4.00
3871 5754 5.358442 TCTTTGATTCACGGGTTTCTCAAAA 59.642 36.000 7.63 0.00 33.62 2.44
3920 5804 7.278646 TGCTCTAACACAACATGACATCTTATC 59.721 37.037 0.00 0.00 0.00 1.75
3960 5851 9.498176 GTTTACTCATCTAAAGTGTTTTAGGGA 57.502 33.333 7.08 5.28 43.83 4.20
3976 5867 6.229561 AGCGAAAGTGAAAGTTTACTCATC 57.770 37.500 0.00 0.00 40.14 2.92
3978 5869 6.431198 AAAGCGAAAGTGAAAGTTTACTCA 57.569 33.333 0.00 0.00 40.14 3.41
3996 5887 4.089636 GTGAAAGGTTACTCGTCTAAAGCG 59.910 45.833 0.00 0.00 0.00 4.68
3997 5888 5.228665 AGTGAAAGGTTACTCGTCTAAAGC 58.771 41.667 0.00 0.00 0.00 3.51
3998 5889 7.710766 AAAGTGAAAGGTTACTCGTCTAAAG 57.289 36.000 0.00 0.00 0.00 1.85
3999 5890 9.034544 GTAAAAGTGAAAGGTTACTCGTCTAAA 57.965 33.333 0.00 0.00 0.00 1.85
4000 5891 8.416329 AGTAAAAGTGAAAGGTTACTCGTCTAA 58.584 33.333 0.00 0.00 32.62 2.10
4001 5892 7.945134 AGTAAAAGTGAAAGGTTACTCGTCTA 58.055 34.615 0.00 0.00 32.62 2.59
4002 5893 6.814043 AGTAAAAGTGAAAGGTTACTCGTCT 58.186 36.000 0.00 0.00 32.62 4.18
4003 5894 7.103159 GAGTAAAAGTGAAAGGTTACTCGTC 57.897 40.000 6.66 0.00 41.30 4.20
4017 5908 6.929606 AGGTGCAGTTTAGTAGAGTAAAAGTG 59.070 38.462 0.00 0.00 36.87 3.16
4027 5918 3.887621 TGGCTAGGTGCAGTTTAGTAG 57.112 47.619 0.00 0.00 45.15 2.57
4028 5919 3.581332 AGTTGGCTAGGTGCAGTTTAGTA 59.419 43.478 0.00 0.00 45.15 1.82
4077 5968 2.584391 GGGCGGCCGAAGAGGATAT 61.584 63.158 33.48 0.00 45.00 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.