Multiple sequence alignment - TraesCS2B01G197300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G197300 chr2B 100.000 5049 0 0 353 5401 175067097 175072145 0.000000e+00 9324.0
1 TraesCS2B01G197300 chr2B 87.015 593 67 9 4812 5401 599218038 599217453 0.000000e+00 660.0
2 TraesCS2B01G197300 chr2B 85.333 600 74 10 4812 5401 699087385 699086790 4.630000e-170 608.0
3 TraesCS2B01G197300 chr2B 100.000 166 0 0 1 166 175066745 175066910 1.890000e-79 307.0
4 TraesCS2B01G197300 chr2B 94.483 145 6 2 23 166 364489861 364490004 7.040000e-54 222.0
5 TraesCS2B01G197300 chr2B 95.588 136 6 0 1830 1965 633577300 633577435 9.110000e-53 219.0
6 TraesCS2B01G197300 chr2D 94.788 2859 124 10 1965 4809 122050082 122052929 0.000000e+00 4431.0
7 TraesCS2B01G197300 chr2D 92.575 1293 42 26 494 1771 122048826 122050079 0.000000e+00 1807.0
8 TraesCS2B01G197300 chr2D 95.833 144 6 0 23 166 20321594 20321451 3.250000e-57 233.0
9 TraesCS2B01G197300 chr2D 94.872 39 2 0 1792 1830 539170024 539170062 1.620000e-05 62.1
10 TraesCS2B01G197300 chr2A 92.514 2872 141 24 1964 4809 126478152 126480975 0.000000e+00 4045.0
11 TraesCS2B01G197300 chr2A 90.673 1426 76 21 353 1760 126476760 126478146 0.000000e+00 1844.0
12 TraesCS2B01G197300 chr2A 90.909 44 3 1 1788 1830 364005985 364006028 2.100000e-04 58.4
13 TraesCS2B01G197300 chr4B 95.455 594 20 6 4812 5401 642422640 642422050 0.000000e+00 941.0
14 TraesCS2B01G197300 chr4B 96.324 136 5 0 1830 1965 7037094 7036959 1.960000e-54 224.0
15 TraesCS2B01G197300 chr4B 93.706 143 9 0 22 164 660870081 660870223 1.180000e-51 215.0
16 TraesCS2B01G197300 chr6B 88.167 600 59 8 4811 5401 26223630 26224226 0.000000e+00 704.0
17 TraesCS2B01G197300 chrUn 87.625 598 61 12 4811 5401 246203844 246203253 0.000000e+00 682.0
18 TraesCS2B01G197300 chrUn 87.625 598 61 12 4811 5401 246216043 246215452 0.000000e+00 682.0
19 TraesCS2B01G197300 chrUn 87.625 598 61 12 4811 5401 271870119 271869528 0.000000e+00 682.0
20 TraesCS2B01G197300 chrUn 94.872 39 2 0 1792 1830 80232709 80232747 1.620000e-05 62.1
21 TraesCS2B01G197300 chr5B 86.522 601 63 13 4813 5401 75708449 75709043 0.000000e+00 645.0
22 TraesCS2B01G197300 chr5B 93.750 144 8 1 23 166 551459056 551459198 1.180000e-51 215.0
23 TraesCS2B01G197300 chr5B 94.872 39 2 0 1792 1830 82456940 82456902 1.620000e-05 62.1
24 TraesCS2B01G197300 chr7B 85.644 606 70 11 4810 5401 702456821 702456219 5.940000e-174 621.0
25 TraesCS2B01G197300 chr7B 94.853 136 7 0 1830 1965 618428150 618428285 4.240000e-51 213.0
26 TraesCS2B01G197300 chr3D 96.552 145 5 0 22 166 578281096 578281240 1.940000e-59 241.0
27 TraesCS2B01G197300 chr3D 94.964 139 7 0 1830 1968 200383953 200383815 9.110000e-53 219.0
28 TraesCS2B01G197300 chr3D 94.928 138 7 0 1830 1967 137981615 137981478 3.280000e-52 217.0
29 TraesCS2B01G197300 chr3D 91.892 148 10 2 1830 1975 537154727 537154874 7.090000e-49 206.0
30 TraesCS2B01G197300 chr5D 97.794 136 3 0 1830 1965 383645349 383645484 9.040000e-58 235.0
31 TraesCS2B01G197300 chr6D 95.833 144 6 0 23 166 408551473 408551330 3.250000e-57 233.0
32 TraesCS2B01G197300 chr6D 94.161 137 8 0 1830 1966 117920244 117920380 5.480000e-50 209.0
33 TraesCS2B01G197300 chr6D 94.872 39 2 0 1792 1830 423084284 423084246 1.620000e-05 62.1
34 TraesCS2B01G197300 chr7D 95.172 145 7 0 22 166 1983153 1983297 4.210000e-56 230.0
35 TraesCS2B01G197300 chr7D 94.928 138 7 0 1830 1967 530858110 530857973 3.280000e-52 217.0
36 TraesCS2B01G197300 chr7D 94.872 39 2 0 1792 1830 14440424 14440386 1.620000e-05 62.1
37 TraesCS2B01G197300 chr1A 93.878 147 9 0 20 166 530527738 530527884 7.040000e-54 222.0
38 TraesCS2B01G197300 chr5A 93.197 147 10 0 20 166 511875751 511875605 3.280000e-52 217.0
39 TraesCS2B01G197300 chr7A 100.000 39 0 0 1792 1830 545926008 545926046 7.500000e-09 73.1
40 TraesCS2B01G197300 chr7A 95.000 40 1 1 1792 1830 62497814 62497853 1.620000e-05 62.1
41 TraesCS2B01G197300 chr4D 93.023 43 2 1 1789 1830 102385087 102385129 1.620000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G197300 chr2B 175066745 175072145 5400 False 4815.5 9324 100.0000 1 5401 2 chr2B.!!$F3 5400
1 TraesCS2B01G197300 chr2B 599217453 599218038 585 True 660.0 660 87.0150 4812 5401 1 chr2B.!!$R1 589
2 TraesCS2B01G197300 chr2B 699086790 699087385 595 True 608.0 608 85.3330 4812 5401 1 chr2B.!!$R2 589
3 TraesCS2B01G197300 chr2D 122048826 122052929 4103 False 3119.0 4431 93.6815 494 4809 2 chr2D.!!$F2 4315
4 TraesCS2B01G197300 chr2A 126476760 126480975 4215 False 2944.5 4045 91.5935 353 4809 2 chr2A.!!$F2 4456
5 TraesCS2B01G197300 chr4B 642422050 642422640 590 True 941.0 941 95.4550 4812 5401 1 chr4B.!!$R2 589
6 TraesCS2B01G197300 chr6B 26223630 26224226 596 False 704.0 704 88.1670 4811 5401 1 chr6B.!!$F1 590
7 TraesCS2B01G197300 chrUn 246203253 246203844 591 True 682.0 682 87.6250 4811 5401 1 chrUn.!!$R1 590
8 TraesCS2B01G197300 chrUn 246215452 246216043 591 True 682.0 682 87.6250 4811 5401 1 chrUn.!!$R2 590
9 TraesCS2B01G197300 chrUn 271869528 271870119 591 True 682.0 682 87.6250 4811 5401 1 chrUn.!!$R3 590
10 TraesCS2B01G197300 chr5B 75708449 75709043 594 False 645.0 645 86.5220 4813 5401 1 chr5B.!!$F1 588
11 TraesCS2B01G197300 chr7B 702456219 702456821 602 True 621.0 621 85.6440 4810 5401 1 chr7B.!!$R1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.034477 TTAGGGCCTAAAGCAGTGGC 60.034 55.0 23.49 0.00 46.50 5.01 F
163 164 0.328258 AGGCCTAAACCAGCGACATT 59.672 50.0 1.29 0.00 0.00 2.71 F
429 430 0.904865 TCTCAGCACCCACCTACCAG 60.905 60.0 0.00 0.00 0.00 4.00 F
2056 2085 0.617935 TGCCATTGCTGCTACACCTA 59.382 50.0 0.00 0.00 38.71 3.08 F
2166 2195 0.376152 GCATGACTTGATCTGTGCCG 59.624 55.0 0.00 0.00 35.12 5.69 F
2855 2897 0.387367 AAGCTGACAGACTGCGTACG 60.387 55.0 11.84 11.84 45.80 3.67 F
3832 3875 0.036306 ACAAGGAAGGCGTTCGGAAT 59.964 50.0 12.65 0.00 32.92 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 1448 0.878523 TCACTTCAAACGCCCGACAG 60.879 55.000 0.00 0.00 0.00 3.51 R
2030 2059 0.967380 AGCAGCAATGGCACCTTACC 60.967 55.000 0.00 0.00 44.61 2.85 R
2156 2185 1.448540 CTGGACACCGGCACAGATC 60.449 63.158 0.00 0.00 32.86 2.75 R
3141 3183 1.001641 CCTGAAGGGCCTGTTCCAG 60.002 63.158 6.92 12.30 0.00 3.86 R
3581 3624 1.147153 GGGGCTGCTGACATAGTCC 59.853 63.158 0.00 2.65 37.97 3.85 R
4334 4377 0.755686 CCCTCATGTAGCCTCCAGAC 59.244 60.000 0.00 0.00 0.00 3.51 R
4949 5008 2.076184 GTATGGGGTGGCTGGCCTA 61.076 63.158 13.05 0.00 36.94 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.744570 GATTGTTTGTTAGGGCCTAAAGC 58.255 43.478 26.95 16.19 42.60 3.51
23 24 3.231207 TGTTTGTTAGGGCCTAAAGCA 57.769 42.857 26.95 18.56 46.50 3.91
24 25 3.153919 TGTTTGTTAGGGCCTAAAGCAG 58.846 45.455 26.95 0.00 46.50 4.24
25 26 3.154710 GTTTGTTAGGGCCTAAAGCAGT 58.845 45.455 26.95 0.00 46.50 4.40
26 27 2.489938 TGTTAGGGCCTAAAGCAGTG 57.510 50.000 26.95 0.00 46.50 3.66
27 28 1.004277 TGTTAGGGCCTAAAGCAGTGG 59.996 52.381 26.95 0.00 46.50 4.00
28 29 0.034477 TTAGGGCCTAAAGCAGTGGC 60.034 55.000 23.49 0.00 46.50 5.01
29 30 2.252072 TAGGGCCTAAAGCAGTGGCG 62.252 60.000 11.78 0.00 46.97 5.69
30 31 3.134127 GGCCTAAAGCAGTGGCGG 61.134 66.667 0.00 0.00 46.97 6.13
31 32 3.622060 GGCCTAAAGCAGTGGCGGA 62.622 63.158 0.00 0.00 46.97 5.54
50 51 4.432712 CGGAGCCAGGAAAATTAAATTGG 58.567 43.478 0.00 0.00 0.00 3.16
51 52 4.680440 CGGAGCCAGGAAAATTAAATTGGG 60.680 45.833 0.00 0.00 0.00 4.12
52 53 4.469586 GGAGCCAGGAAAATTAAATTGGGA 59.530 41.667 0.00 0.00 0.00 4.37
53 54 5.395657 GGAGCCAGGAAAATTAAATTGGGAG 60.396 44.000 0.00 0.00 0.00 4.30
54 55 5.093677 AGCCAGGAAAATTAAATTGGGAGT 58.906 37.500 0.00 0.00 0.00 3.85
55 56 5.046376 AGCCAGGAAAATTAAATTGGGAGTG 60.046 40.000 0.00 0.00 0.00 3.51
56 57 5.178061 CCAGGAAAATTAAATTGGGAGTGC 58.822 41.667 0.00 0.00 0.00 4.40
57 58 5.178061 CAGGAAAATTAAATTGGGAGTGCC 58.822 41.667 0.00 0.00 0.00 5.01
58 59 4.843516 AGGAAAATTAAATTGGGAGTGCCA 59.156 37.500 0.00 0.00 35.15 4.92
59 60 5.309282 AGGAAAATTAAATTGGGAGTGCCAA 59.691 36.000 19.31 19.31 35.15 4.52
60 61 6.000840 GGAAAATTAAATTGGGAGTGCCAAA 58.999 36.000 20.90 3.91 35.15 3.28
61 62 6.072728 GGAAAATTAAATTGGGAGTGCCAAAC 60.073 38.462 20.90 3.89 35.15 2.93
62 63 3.651803 TTAAATTGGGAGTGCCAAACG 57.348 42.857 20.90 0.00 35.15 3.60
63 64 1.408969 AAATTGGGAGTGCCAAACGT 58.591 45.000 20.90 6.01 35.15 3.99
64 65 1.408969 AATTGGGAGTGCCAAACGTT 58.591 45.000 20.90 7.56 35.15 3.99
65 66 0.673437 ATTGGGAGTGCCAAACGTTG 59.327 50.000 20.90 0.00 35.15 4.10
76 77 3.786516 CCAAACGTTGGTAAACCTTGT 57.213 42.857 0.00 0.00 45.93 3.16
77 78 4.112716 CCAAACGTTGGTAAACCTTGTT 57.887 40.909 0.00 0.26 45.93 2.83
78 79 4.496360 CCAAACGTTGGTAAACCTTGTTT 58.504 39.130 0.00 6.04 45.93 2.83
79 80 4.327627 CCAAACGTTGGTAAACCTTGTTTG 59.672 41.667 23.01 23.01 45.93 2.93
80 81 3.786516 ACGTTGGTAAACCTTGTTTGG 57.213 42.857 0.02 0.00 36.82 3.28
81 82 2.427812 ACGTTGGTAAACCTTGTTTGGG 59.572 45.455 0.02 0.00 36.82 4.12
82 83 2.688958 CGTTGGTAAACCTTGTTTGGGA 59.311 45.455 0.02 0.00 36.82 4.37
83 84 3.243267 CGTTGGTAAACCTTGTTTGGGAG 60.243 47.826 0.02 0.00 36.82 4.30
84 85 2.952116 TGGTAAACCTTGTTTGGGAGG 58.048 47.619 0.02 0.00 39.02 4.30
85 86 2.244695 GGTAAACCTTGTTTGGGAGGG 58.755 52.381 2.60 0.00 37.36 4.30
86 87 1.616865 GTAAACCTTGTTTGGGAGGGC 59.383 52.381 2.60 0.00 37.36 5.19
87 88 0.762842 AAACCTTGTTTGGGAGGGCC 60.763 55.000 0.00 0.00 37.36 5.80
88 89 1.955458 AACCTTGTTTGGGAGGGCCA 61.955 55.000 6.18 0.00 37.36 5.36
89 90 1.079073 CCTTGTTTGGGAGGGCCAT 59.921 57.895 6.18 0.00 35.15 4.40
90 91 0.334676 CCTTGTTTGGGAGGGCCATA 59.665 55.000 6.18 0.00 35.15 2.74
91 92 1.062962 CCTTGTTTGGGAGGGCCATAT 60.063 52.381 6.18 0.00 35.15 1.78
92 93 2.310538 CTTGTTTGGGAGGGCCATATC 58.689 52.381 6.18 0.00 35.15 1.63
93 94 1.303898 TGTTTGGGAGGGCCATATCA 58.696 50.000 6.18 0.00 35.15 2.15
94 95 1.858910 TGTTTGGGAGGGCCATATCAT 59.141 47.619 6.18 0.00 35.15 2.45
95 96 2.247111 TGTTTGGGAGGGCCATATCATT 59.753 45.455 6.18 0.00 35.15 2.57
96 97 3.465210 TGTTTGGGAGGGCCATATCATTA 59.535 43.478 6.18 0.00 35.15 1.90
97 98 4.078922 TGTTTGGGAGGGCCATATCATTAA 60.079 41.667 6.18 0.00 35.15 1.40
98 99 4.823364 TTGGGAGGGCCATATCATTAAA 57.177 40.909 6.18 0.00 35.15 1.52
99 100 4.823364 TGGGAGGGCCATATCATTAAAA 57.177 40.909 6.18 0.00 35.15 1.52
100 101 5.352700 TGGGAGGGCCATATCATTAAAAT 57.647 39.130 6.18 0.00 35.15 1.82
101 102 5.085920 TGGGAGGGCCATATCATTAAAATG 58.914 41.667 6.18 0.00 35.16 2.32
102 103 4.081476 GGGAGGGCCATATCATTAAAATGC 60.081 45.833 6.18 0.00 34.38 3.56
103 104 4.527816 GGAGGGCCATATCATTAAAATGCA 59.472 41.667 6.18 0.00 36.36 3.96
104 105 5.188359 GGAGGGCCATATCATTAAAATGCAT 59.812 40.000 6.18 0.00 36.36 3.96
105 106 6.296030 GGAGGGCCATATCATTAAAATGCATT 60.296 38.462 5.99 5.99 36.36 3.56
106 107 6.469410 AGGGCCATATCATTAAAATGCATTG 58.531 36.000 13.82 0.11 36.36 2.82
107 108 6.043474 AGGGCCATATCATTAAAATGCATTGT 59.957 34.615 13.82 10.46 36.36 2.71
108 109 6.711645 GGGCCATATCATTAAAATGCATTGTT 59.288 34.615 13.82 11.63 36.36 2.83
109 110 7.229106 GGGCCATATCATTAAAATGCATTGTTT 59.771 33.333 13.82 7.16 36.36 2.83
110 111 8.623030 GGCCATATCATTAAAATGCATTGTTTT 58.377 29.630 13.82 7.22 36.36 2.43
117 118 9.049523 TCATTAAAATGCATTGTTTTAACAGCA 57.950 25.926 13.82 10.65 41.25 4.41
118 119 9.661187 CATTAAAATGCATTGTTTTAACAGCAA 57.339 25.926 13.82 0.00 41.43 3.91
121 122 8.976986 AAAATGCATTGTTTTAACAGCAAAAA 57.023 23.077 13.82 0.00 41.43 1.94
147 148 8.943909 AGTCAATGTTTACACTAGTATTAGGC 57.056 34.615 0.00 0.00 0.00 3.93
148 149 7.985752 AGTCAATGTTTACACTAGTATTAGGCC 59.014 37.037 0.00 0.00 0.00 5.19
149 150 7.985752 GTCAATGTTTACACTAGTATTAGGCCT 59.014 37.037 11.78 11.78 0.00 5.19
150 151 9.204337 TCAATGTTTACACTAGTATTAGGCCTA 57.796 33.333 8.91 8.91 0.00 3.93
151 152 9.826574 CAATGTTTACACTAGTATTAGGCCTAA 57.173 33.333 27.11 27.11 0.00 2.69
153 154 9.828039 ATGTTTACACTAGTATTAGGCCTAAAC 57.172 33.333 28.50 23.95 32.11 2.01
154 155 8.260114 TGTTTACACTAGTATTAGGCCTAAACC 58.740 37.037 28.50 20.38 31.41 3.27
155 156 7.976414 TTACACTAGTATTAGGCCTAAACCA 57.024 36.000 28.50 14.13 0.00 3.67
156 157 6.481434 ACACTAGTATTAGGCCTAAACCAG 57.519 41.667 28.50 23.52 0.00 4.00
157 158 5.163332 ACACTAGTATTAGGCCTAAACCAGC 60.163 44.000 28.50 15.86 0.00 4.85
158 159 3.470645 AGTATTAGGCCTAAACCAGCG 57.529 47.619 28.50 0.00 0.00 5.18
159 160 3.036091 AGTATTAGGCCTAAACCAGCGA 58.964 45.455 28.50 3.97 0.00 4.93
160 161 2.327200 ATTAGGCCTAAACCAGCGAC 57.673 50.000 28.50 0.00 0.00 5.19
161 162 0.978151 TTAGGCCTAAACCAGCGACA 59.022 50.000 23.21 0.00 0.00 4.35
162 163 1.200519 TAGGCCTAAACCAGCGACAT 58.799 50.000 10.98 0.00 0.00 3.06
163 164 0.328258 AGGCCTAAACCAGCGACATT 59.672 50.000 1.29 0.00 0.00 2.71
164 165 1.557832 AGGCCTAAACCAGCGACATTA 59.442 47.619 1.29 0.00 0.00 1.90
165 166 1.940613 GGCCTAAACCAGCGACATTAG 59.059 52.381 0.00 0.00 0.00 1.73
383 384 2.047655 TCGCGGGCGATTTCAAGT 60.048 55.556 12.26 0.00 44.01 3.16
388 389 1.668751 GCGGGCGATTTCAAGTTGATA 59.331 47.619 6.36 1.98 0.00 2.15
389 390 2.286418 GCGGGCGATTTCAAGTTGATAG 60.286 50.000 6.36 0.15 0.00 2.08
402 403 1.401905 GTTGATAGCTTTCTTGGGGCG 59.598 52.381 5.74 0.00 0.00 6.13
414 415 3.379445 GGGGCGGTTCGAGTCTCA 61.379 66.667 0.00 0.00 0.00 3.27
415 416 2.182030 GGGCGGTTCGAGTCTCAG 59.818 66.667 0.00 0.00 0.00 3.35
425 426 0.965866 CGAGTCTCAGCACCCACCTA 60.966 60.000 0.00 0.00 0.00 3.08
429 430 0.904865 TCTCAGCACCCACCTACCAG 60.905 60.000 0.00 0.00 0.00 4.00
464 465 3.979911 TCAAGGATGGTTAATGCCACAT 58.020 40.909 0.00 0.00 41.94 3.21
467 468 4.518278 AGGATGGTTAATGCCACATACA 57.482 40.909 0.00 0.00 41.94 2.29
468 469 4.464008 AGGATGGTTAATGCCACATACAG 58.536 43.478 0.00 0.00 41.94 2.74
479 480 1.665679 CCACATACAGGTTGATGCGTC 59.334 52.381 0.00 0.00 0.00 5.19
527 528 2.703536 TGCTCTTTAGAGGTGACCAACA 59.296 45.455 3.63 0.00 42.29 3.33
541 542 0.948623 CCAACATTGGTCGAGACGCA 60.949 55.000 2.22 0.00 43.43 5.24
609 610 3.263261 TCTTTGTGTGCGTGTAAGTTGA 58.737 40.909 0.00 0.00 0.00 3.18
617 618 1.937899 GCGTGTAAGTTGAAGTGGTGT 59.062 47.619 0.00 0.00 0.00 4.16
639 640 1.144716 GCCTCTCATCGGCATGTGA 59.855 57.895 0.00 0.00 46.77 3.58
643 644 1.069668 CTCTCATCGGCATGTGATGGA 59.930 52.381 21.99 17.77 42.73 3.41
652 658 2.557924 GGCATGTGATGGAAGTTTGTCA 59.442 45.455 0.00 0.00 0.00 3.58
683 689 9.851686 TCTTGTATTTAATCATGTGCCTTCTAT 57.148 29.630 0.00 0.00 0.00 1.98
804 811 5.353394 TGGCGACTTGAGGTCTAAAATAT 57.647 39.130 0.00 0.00 42.44 1.28
816 824 7.093201 TGAGGTCTAAAATATAAACGACCACCT 60.093 37.037 13.42 0.00 42.49 4.00
927 942 1.307866 TCCAATCTCCACCTCCCCC 60.308 63.158 0.00 0.00 0.00 5.40
928 943 1.619363 CCAATCTCCACCTCCCCCA 60.619 63.158 0.00 0.00 0.00 4.96
929 944 1.609783 CAATCTCCACCTCCCCCAC 59.390 63.158 0.00 0.00 0.00 4.61
930 945 0.916358 CAATCTCCACCTCCCCCACT 60.916 60.000 0.00 0.00 0.00 4.00
940 955 3.017581 CCCCCACTCCCCCTCTTG 61.018 72.222 0.00 0.00 0.00 3.02
941 956 3.732849 CCCCACTCCCCCTCTTGC 61.733 72.222 0.00 0.00 0.00 4.01
942 957 3.732849 CCCACTCCCCCTCTTGCC 61.733 72.222 0.00 0.00 0.00 4.52
1152 1167 4.148825 CGGACTCCGCCTTCCCTG 62.149 72.222 4.10 0.00 41.17 4.45
1188 1203 2.285743 GACCAAGGGGAGGCTCCT 60.286 66.667 31.39 12.11 36.57 3.69
1189 1204 2.285743 ACCAAGGGGAGGCTCCTC 60.286 66.667 31.39 29.17 37.26 3.71
1190 1205 3.474570 CCAAGGGGAGGCTCCTCG 61.475 72.222 31.39 16.77 43.53 4.63
1191 1206 2.364317 CAAGGGGAGGCTCCTCGA 60.364 66.667 31.39 0.00 43.53 4.04
1433 1448 4.160635 CATCGTTTCGGCGTGGCC 62.161 66.667 6.85 0.00 46.75 5.36
1522 1544 2.043652 AGCGGCGACCCTTACCTA 60.044 61.111 12.98 0.00 0.00 3.08
1771 1800 8.024285 GGCTCACTGATATGTACTGTAACTATC 58.976 40.741 0.00 9.38 0.00 2.08
1772 1801 8.788806 GCTCACTGATATGTACTGTAACTATCT 58.211 37.037 14.20 0.20 0.00 1.98
1778 1807 9.736414 TGATATGTACTGTAACTATCTACTCCC 57.264 37.037 14.20 0.00 0.00 4.30
1779 1808 9.962809 GATATGTACTGTAACTATCTACTCCCT 57.037 37.037 0.00 0.00 0.00 4.20
1780 1809 9.962809 ATATGTACTGTAACTATCTACTCCCTC 57.037 37.037 0.00 0.00 0.00 4.30
1781 1810 6.599445 TGTACTGTAACTATCTACTCCCTCC 58.401 44.000 0.00 0.00 0.00 4.30
1782 1811 4.716794 ACTGTAACTATCTACTCCCTCCG 58.283 47.826 0.00 0.00 0.00 4.63
1783 1812 4.165758 ACTGTAACTATCTACTCCCTCCGT 59.834 45.833 0.00 0.00 0.00 4.69
1784 1813 5.121380 TGTAACTATCTACTCCCTCCGTT 57.879 43.478 0.00 0.00 0.00 4.44
1785 1814 5.128919 TGTAACTATCTACTCCCTCCGTTC 58.871 45.833 0.00 0.00 0.00 3.95
1786 1815 3.226682 ACTATCTACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
1787 1816 2.784682 ACTATCTACTCCCTCCGTTCCT 59.215 50.000 0.00 0.00 0.00 3.36
1788 1817 3.979347 ACTATCTACTCCCTCCGTTCCTA 59.021 47.826 0.00 0.00 0.00 2.94
1789 1818 4.602732 ACTATCTACTCCCTCCGTTCCTAT 59.397 45.833 0.00 0.00 0.00 2.57
1790 1819 5.789575 ACTATCTACTCCCTCCGTTCCTATA 59.210 44.000 0.00 0.00 0.00 1.31
1791 1820 5.799978 ATCTACTCCCTCCGTTCCTATAT 57.200 43.478 0.00 0.00 0.00 0.86
1792 1821 5.595814 TCTACTCCCTCCGTTCCTATATT 57.404 43.478 0.00 0.00 0.00 1.28
1793 1822 5.568392 TCTACTCCCTCCGTTCCTATATTC 58.432 45.833 0.00 0.00 0.00 1.75
1794 1823 4.194678 ACTCCCTCCGTTCCTATATTCA 57.805 45.455 0.00 0.00 0.00 2.57
1795 1824 4.553678 ACTCCCTCCGTTCCTATATTCAA 58.446 43.478 0.00 0.00 0.00 2.69
1796 1825 5.155905 ACTCCCTCCGTTCCTATATTCAAT 58.844 41.667 0.00 0.00 0.00 2.57
1797 1826 5.012148 ACTCCCTCCGTTCCTATATTCAATG 59.988 44.000 0.00 0.00 0.00 2.82
1798 1827 4.003648 CCCTCCGTTCCTATATTCAATGC 58.996 47.826 0.00 0.00 0.00 3.56
1799 1828 4.504864 CCCTCCGTTCCTATATTCAATGCA 60.505 45.833 0.00 0.00 0.00 3.96
1800 1829 5.063204 CCTCCGTTCCTATATTCAATGCAA 58.937 41.667 0.00 0.00 0.00 4.08
1801 1830 5.530915 CCTCCGTTCCTATATTCAATGCAAA 59.469 40.000 0.00 0.00 0.00 3.68
1802 1831 6.371809 TCCGTTCCTATATTCAATGCAAAC 57.628 37.500 0.00 0.00 0.00 2.93
1803 1832 6.119536 TCCGTTCCTATATTCAATGCAAACT 58.880 36.000 0.00 0.00 0.00 2.66
1804 1833 7.276658 TCCGTTCCTATATTCAATGCAAACTA 58.723 34.615 0.00 0.00 0.00 2.24
1805 1834 7.225931 TCCGTTCCTATATTCAATGCAAACTAC 59.774 37.037 0.00 0.00 0.00 2.73
1806 1835 7.063456 CGTTCCTATATTCAATGCAAACTACG 58.937 38.462 0.00 0.00 0.00 3.51
1807 1836 7.254319 CGTTCCTATATTCAATGCAAACTACGT 60.254 37.037 0.00 0.00 0.00 3.57
1808 1837 9.037737 GTTCCTATATTCAATGCAAACTACGTA 57.962 33.333 0.00 0.00 0.00 3.57
1809 1838 8.583810 TCCTATATTCAATGCAAACTACGTAC 57.416 34.615 0.00 0.00 0.00 3.67
1810 1839 7.380333 TCCTATATTCAATGCAAACTACGTACG 59.620 37.037 15.01 15.01 0.00 3.67
1811 1840 4.593597 ATTCAATGCAAACTACGTACGG 57.406 40.909 21.06 5.00 0.00 4.02
1812 1841 3.300852 TCAATGCAAACTACGTACGGA 57.699 42.857 21.06 10.81 0.00 4.69
1813 1842 3.852286 TCAATGCAAACTACGTACGGAT 58.148 40.909 21.06 1.34 0.00 4.18
1814 1843 3.615056 TCAATGCAAACTACGTACGGATG 59.385 43.478 21.06 7.77 0.00 3.51
1815 1844 2.728690 TGCAAACTACGTACGGATGT 57.271 45.000 21.06 11.85 0.00 3.06
1816 1845 3.846423 TGCAAACTACGTACGGATGTA 57.154 42.857 21.06 2.97 0.00 2.29
1817 1846 4.374843 TGCAAACTACGTACGGATGTAT 57.625 40.909 21.06 0.00 32.11 2.29
1818 1847 5.497635 TGCAAACTACGTACGGATGTATA 57.502 39.130 21.06 0.30 32.11 1.47
1819 1848 6.075762 TGCAAACTACGTACGGATGTATAT 57.924 37.500 21.06 0.00 32.11 0.86
1820 1849 7.200778 TGCAAACTACGTACGGATGTATATA 57.799 36.000 21.06 0.00 32.11 0.86
1821 1850 7.300320 TGCAAACTACGTACGGATGTATATAG 58.700 38.462 21.06 11.46 32.11 1.31
1822 1851 7.173047 TGCAAACTACGTACGGATGTATATAGA 59.827 37.037 21.06 0.00 32.11 1.98
1823 1852 7.479916 GCAAACTACGTACGGATGTATATAGAC 59.520 40.741 21.06 0.00 32.11 2.59
1824 1853 8.498358 CAAACTACGTACGGATGTATATAGACA 58.502 37.037 21.06 2.07 32.11 3.41
1825 1854 8.783833 AACTACGTACGGATGTATATAGACAT 57.216 34.615 21.06 12.70 42.82 3.06
1826 1855 9.875691 AACTACGTACGGATGTATATAGACATA 57.124 33.333 21.06 0.00 40.18 2.29
1852 1881 8.816640 TTTCTTTCTAGGATTTCAATGCAAAC 57.183 30.769 0.00 0.00 0.00 2.93
1853 1882 7.765695 TCTTTCTAGGATTTCAATGCAAACT 57.234 32.000 0.00 0.00 0.00 2.66
1854 1883 8.862325 TCTTTCTAGGATTTCAATGCAAACTA 57.138 30.769 0.00 0.00 0.00 2.24
1855 1884 8.730680 TCTTTCTAGGATTTCAATGCAAACTAC 58.269 33.333 0.00 0.00 0.00 2.73
1856 1885 7.994425 TTCTAGGATTTCAATGCAAACTACA 57.006 32.000 0.00 0.00 0.00 2.74
1857 1886 8.579850 TTCTAGGATTTCAATGCAAACTACAT 57.420 30.769 0.00 0.00 0.00 2.29
1858 1887 9.679661 TTCTAGGATTTCAATGCAAACTACATA 57.320 29.630 0.00 0.00 0.00 2.29
1859 1888 9.109393 TCTAGGATTTCAATGCAAACTACATAC 57.891 33.333 0.00 0.00 0.00 2.39
1860 1889 6.785191 AGGATTTCAATGCAAACTACATACG 58.215 36.000 0.00 0.00 0.00 3.06
1861 1890 5.971202 GGATTTCAATGCAAACTACATACGG 59.029 40.000 0.00 0.00 0.00 4.02
1862 1891 6.183360 GGATTTCAATGCAAACTACATACGGA 60.183 38.462 0.00 0.00 0.00 4.69
1863 1892 6.751514 TTTCAATGCAAACTACATACGGAT 57.248 33.333 0.00 0.00 0.00 4.18
1864 1893 5.733226 TCAATGCAAACTACATACGGATG 57.267 39.130 5.94 5.94 39.16 3.51
1866 1895 6.342111 TCAATGCAAACTACATACGGATGTA 58.658 36.000 19.32 19.32 44.77 2.29
1867 1896 6.989759 TCAATGCAAACTACATACGGATGTAT 59.010 34.615 20.64 4.46 45.42 2.29
1868 1897 8.145122 TCAATGCAAACTACATACGGATGTATA 58.855 33.333 20.64 1.71 45.42 1.47
1869 1898 8.935844 CAATGCAAACTACATACGGATGTATAT 58.064 33.333 20.64 9.64 45.42 0.86
1871 1900 9.803315 ATGCAAACTACATACGGATGTATATAG 57.197 33.333 20.64 13.28 45.42 1.31
1872 1901 9.016438 TGCAAACTACATACGGATGTATATAGA 57.984 33.333 20.64 0.00 45.42 1.98
1873 1902 9.286946 GCAAACTACATACGGATGTATATAGAC 57.713 37.037 20.64 6.10 45.42 2.59
1904 1933 6.690194 AGAGTGTAGATTCATCCATTTTGC 57.310 37.500 0.00 0.00 0.00 3.68
1905 1934 6.421485 AGAGTGTAGATTCATCCATTTTGCT 58.579 36.000 0.00 0.00 0.00 3.91
1906 1935 6.541641 AGAGTGTAGATTCATCCATTTTGCTC 59.458 38.462 0.00 0.00 0.00 4.26
1907 1936 5.591877 AGTGTAGATTCATCCATTTTGCTCC 59.408 40.000 0.00 0.00 0.00 4.70
1908 1937 4.576053 TGTAGATTCATCCATTTTGCTCCG 59.424 41.667 0.00 0.00 0.00 4.63
1909 1938 3.624777 AGATTCATCCATTTTGCTCCGT 58.375 40.909 0.00 0.00 0.00 4.69
1910 1939 4.780815 AGATTCATCCATTTTGCTCCGTA 58.219 39.130 0.00 0.00 0.00 4.02
1911 1940 5.380043 AGATTCATCCATTTTGCTCCGTAT 58.620 37.500 0.00 0.00 0.00 3.06
1912 1941 4.898829 TTCATCCATTTTGCTCCGTATG 57.101 40.909 0.00 0.00 0.00 2.39
1913 1942 3.884895 TCATCCATTTTGCTCCGTATGT 58.115 40.909 0.00 0.00 0.00 2.29
1914 1943 5.029807 TCATCCATTTTGCTCCGTATGTA 57.970 39.130 0.00 0.00 0.00 2.29
1915 1944 5.056480 TCATCCATTTTGCTCCGTATGTAG 58.944 41.667 0.00 0.00 0.00 2.74
1916 1945 3.804036 TCCATTTTGCTCCGTATGTAGG 58.196 45.455 0.00 0.00 0.00 3.18
1917 1946 2.290641 CCATTTTGCTCCGTATGTAGGC 59.709 50.000 0.00 0.00 0.00 3.93
1918 1947 3.206150 CATTTTGCTCCGTATGTAGGCT 58.794 45.455 0.00 0.00 0.00 4.58
1919 1948 2.309528 TTTGCTCCGTATGTAGGCTG 57.690 50.000 0.00 0.00 0.00 4.85
1920 1949 1.191535 TTGCTCCGTATGTAGGCTGT 58.808 50.000 0.00 0.00 0.00 4.40
1921 1950 2.061509 TGCTCCGTATGTAGGCTGTA 57.938 50.000 0.00 0.00 0.00 2.74
1922 1951 1.954382 TGCTCCGTATGTAGGCTGTAG 59.046 52.381 0.00 0.00 0.00 2.74
1923 1952 1.955080 GCTCCGTATGTAGGCTGTAGT 59.045 52.381 0.00 0.00 0.00 2.73
1924 1953 2.287668 GCTCCGTATGTAGGCTGTAGTG 60.288 54.545 0.00 0.00 0.00 2.74
1925 1954 3.211865 CTCCGTATGTAGGCTGTAGTGA 58.788 50.000 0.00 0.00 0.00 3.41
1926 1955 3.623703 TCCGTATGTAGGCTGTAGTGAA 58.376 45.455 0.00 0.00 0.00 3.18
1927 1956 4.018490 TCCGTATGTAGGCTGTAGTGAAA 58.982 43.478 0.00 0.00 0.00 2.69
1928 1957 4.647853 TCCGTATGTAGGCTGTAGTGAAAT 59.352 41.667 0.00 0.00 0.00 2.17
1929 1958 4.982916 CCGTATGTAGGCTGTAGTGAAATC 59.017 45.833 0.00 0.00 0.00 2.17
1930 1959 5.221263 CCGTATGTAGGCTGTAGTGAAATCT 60.221 44.000 0.00 0.00 0.00 2.40
1931 1960 5.915758 CGTATGTAGGCTGTAGTGAAATCTC 59.084 44.000 0.00 0.00 0.00 2.75
1932 1961 6.238786 CGTATGTAGGCTGTAGTGAAATCTCT 60.239 42.308 0.00 0.00 0.00 3.10
1933 1962 7.041303 CGTATGTAGGCTGTAGTGAAATCTCTA 60.041 40.741 0.00 0.00 0.00 2.43
1934 1963 7.661536 ATGTAGGCTGTAGTGAAATCTCTAA 57.338 36.000 0.00 0.00 0.00 2.10
1935 1964 7.476540 TGTAGGCTGTAGTGAAATCTCTAAA 57.523 36.000 0.00 0.00 0.00 1.85
1936 1965 7.903145 TGTAGGCTGTAGTGAAATCTCTAAAA 58.097 34.615 0.00 0.00 0.00 1.52
1937 1966 8.372459 TGTAGGCTGTAGTGAAATCTCTAAAAA 58.628 33.333 0.00 0.00 0.00 1.94
1938 1967 7.913674 AGGCTGTAGTGAAATCTCTAAAAAG 57.086 36.000 0.00 0.00 0.00 2.27
1939 1968 7.680730 AGGCTGTAGTGAAATCTCTAAAAAGA 58.319 34.615 0.00 0.00 0.00 2.52
1940 1969 7.604545 AGGCTGTAGTGAAATCTCTAAAAAGAC 59.395 37.037 0.00 0.00 0.00 3.01
1941 1970 7.604545 GGCTGTAGTGAAATCTCTAAAAAGACT 59.395 37.037 0.00 0.00 0.00 3.24
1942 1971 8.994170 GCTGTAGTGAAATCTCTAAAAAGACTT 58.006 33.333 0.00 0.00 0.00 3.01
1959 1988 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1960 1989 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1962 1991 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1979 2008 6.071728 CGGAGGGAGTAGTAGAACTGTTTTTA 60.072 42.308 0.00 0.00 0.00 1.52
2019 2048 8.827677 GCTTAGTGTGGTAGTATTATTTTCTGG 58.172 37.037 0.00 0.00 0.00 3.86
2030 2059 8.040716 AGTATTATTTTCTGGAACGAACCAAG 57.959 34.615 6.76 2.73 39.59 3.61
2055 2084 0.962356 GTGCCATTGCTGCTACACCT 60.962 55.000 0.00 0.00 38.71 4.00
2056 2085 0.617935 TGCCATTGCTGCTACACCTA 59.382 50.000 0.00 0.00 38.71 3.08
2064 2093 1.209504 GCTGCTACACCTATTCCACCA 59.790 52.381 0.00 0.00 0.00 4.17
2093 2122 9.803130 CTGATAAAGTGATAATGTAGCAATTCG 57.197 33.333 0.00 0.00 30.64 3.34
2129 2158 4.171754 GGTAGATTATTCGTACCGGCATC 58.828 47.826 0.00 0.00 0.00 3.91
2131 2160 3.914312 AGATTATTCGTACCGGCATCTG 58.086 45.455 0.00 0.00 0.00 2.90
2156 2185 6.691818 GCAGATAATTTTCTGAGCATGACTTG 59.308 38.462 24.71 0.83 44.88 3.16
2166 2195 0.376152 GCATGACTTGATCTGTGCCG 59.624 55.000 0.00 0.00 35.12 5.69
2247 2276 5.523883 TTAGTTATATGGTTATGGGCCCC 57.476 43.478 22.27 2.51 0.00 5.80
2248 2277 3.620195 AGTTATATGGTTATGGGCCCCT 58.380 45.455 22.27 13.22 0.00 4.79
2249 2278 3.591977 AGTTATATGGTTATGGGCCCCTC 59.408 47.826 22.27 6.69 0.00 4.30
2251 2280 2.222461 TATGGTTATGGGCCCCTCTT 57.778 50.000 22.27 3.84 0.00 2.85
2252 2281 1.318934 ATGGTTATGGGCCCCTCTTT 58.681 50.000 22.27 0.96 0.00 2.52
2466 2505 5.277857 TCACCTCTATTAAAGTAGGCTGC 57.722 43.478 0.00 0.00 31.98 5.25
2547 2586 2.775890 ACCAGATCAAAGCAGACACAG 58.224 47.619 0.00 0.00 0.00 3.66
2548 2587 2.105477 ACCAGATCAAAGCAGACACAGT 59.895 45.455 0.00 0.00 0.00 3.55
2647 2686 2.412870 CTACATGTTGTCGCCTTGTCA 58.587 47.619 2.30 0.00 0.00 3.58
2674 2713 7.885399 GTCATCTTTATCAATATTACCCCTGCT 59.115 37.037 0.00 0.00 0.00 4.24
2686 2725 3.362372 ACCCCTGCTATATGTTAGGGT 57.638 47.619 15.03 8.64 46.89 4.34
2744 2786 5.637810 GTCGTTTGAGGACATTGAATGACTA 59.362 40.000 12.80 0.00 34.83 2.59
2804 2846 1.615392 AGTCATTTGAGCAAACTGGCC 59.385 47.619 0.00 0.00 32.51 5.36
2830 2872 2.586258 AACGATACAGCGAGCAGAAT 57.414 45.000 0.00 0.00 34.83 2.40
2847 2889 4.437121 GCAGAATTGATGAAGCTGACAGAC 60.437 45.833 6.65 0.00 0.00 3.51
2855 2897 0.387367 AAGCTGACAGACTGCGTACG 60.387 55.000 11.84 11.84 45.80 3.67
2909 2951 6.314648 CAGTGCTTATCAAACTTGCTGATAGA 59.685 38.462 0.00 0.00 37.16 1.98
2930 2972 8.687292 ATAGACTACACAATATGAGGACGTTA 57.313 34.615 0.00 0.00 0.00 3.18
2978 3020 2.289547 GTGCTTTGCGAAGGAAACACTA 59.710 45.455 15.61 0.00 44.43 2.74
3077 3119 5.049129 GCATCTTTACCCAGAGCAATATGAC 60.049 44.000 0.00 0.00 0.00 3.06
3141 3183 1.063166 GCAGCTGCAATAAGGCGAC 59.937 57.895 33.36 0.00 41.59 5.19
3172 3214 2.122768 CCTTCAGGTGAGAGGGCTATT 58.877 52.381 0.00 0.00 0.00 1.73
3206 3248 0.747283 CAGGGAGGCACAAGAGCATC 60.747 60.000 0.00 0.00 44.01 3.91
3245 3287 2.605837 TGACAAGGTAAACTCGTGCA 57.394 45.000 0.00 0.00 0.00 4.57
3267 3309 5.750067 GCATCATGTTTTCATTATGGTGTCC 59.250 40.000 0.00 0.00 40.35 4.02
3276 3318 9.444600 GTTTTCATTATGGTGTCCTTACTAGAA 57.555 33.333 0.00 0.00 0.00 2.10
3280 3322 9.444600 TCATTATGGTGTCCTTACTAGAAAAAC 57.555 33.333 0.00 0.00 0.00 2.43
3281 3323 9.226606 CATTATGGTGTCCTTACTAGAAAAACA 57.773 33.333 0.00 0.00 0.00 2.83
3282 3324 9.802039 ATTATGGTGTCCTTACTAGAAAAACAA 57.198 29.630 0.00 0.00 0.00 2.83
3283 3325 9.629878 TTATGGTGTCCTTACTAGAAAAACAAA 57.370 29.630 0.00 0.00 0.00 2.83
3412 3455 1.319541 TGCTAGCCGGAGAGACATAC 58.680 55.000 13.29 0.00 0.00 2.39
3441 3484 7.219535 CACTAAACATGCTAATGTGATTGCTTC 59.780 37.037 0.00 0.00 46.58 3.86
3581 3624 5.590663 GCCTAGAATTCCTGGGAAGTTTAAG 59.409 44.000 13.96 0.98 45.62 1.85
3678 3721 8.154856 AGAAAAGTATGTCAAGGTGCTAACTTA 58.845 33.333 0.00 0.00 0.00 2.24
3688 3731 6.490040 TCAAGGTGCTAACTTAATGCTTCTTT 59.510 34.615 0.00 0.00 0.00 2.52
3826 3869 0.323957 GGAGGTACAAGGAAGGCGTT 59.676 55.000 0.00 0.00 0.00 4.84
3829 3872 1.017701 GGTACAAGGAAGGCGTTCGG 61.018 60.000 12.65 7.61 32.92 4.30
3832 3875 0.036306 ACAAGGAAGGCGTTCGGAAT 59.964 50.000 12.65 0.00 32.92 3.01
3937 3980 1.376037 GCCTCCTGGACTTGGTTCG 60.376 63.158 0.00 0.00 34.57 3.95
4057 4100 9.807921 ATACTTCTGGAGAATGAAAAGGTTAAA 57.192 29.630 0.00 0.00 33.01 1.52
4058 4101 8.533569 ACTTCTGGAGAATGAAAAGGTTAAAA 57.466 30.769 0.00 0.00 33.01 1.52
4084 4127 4.684703 ACCGTCATAATATTTCACGCTAGC 59.315 41.667 4.06 4.06 0.00 3.42
4099 4142 2.033662 CGCTAGCGCTTTCTGATTAACC 60.034 50.000 26.07 0.00 0.00 2.85
4110 4153 6.292328 GCTTTCTGATTAACCAAAGTTGCAAC 60.292 38.462 22.17 22.17 36.68 4.17
4184 4227 1.131638 TGTCAGTGCAAGAACTCCCT 58.868 50.000 0.00 0.00 0.00 4.20
4316 4359 1.446792 CGACGTGCTGGAGCTGATT 60.447 57.895 0.00 0.00 42.66 2.57
4327 4370 2.639347 TGGAGCTGATTCCTTCAACTCA 59.361 45.455 0.00 0.00 45.51 3.41
4334 4377 5.381174 TGATTCCTTCAACTCAATGCAAG 57.619 39.130 0.00 0.00 0.00 4.01
4356 4399 0.339859 TGGAGGCTACATGAGGGAGT 59.660 55.000 0.00 0.00 0.00 3.85
4368 4411 2.238521 TGAGGGAGTTCAACCAAATGC 58.761 47.619 0.00 0.00 0.00 3.56
4373 4416 2.029918 GGAGTTCAACCAAATGCCTGAC 60.030 50.000 0.00 0.00 0.00 3.51
4420 4463 0.176680 CAGCCGTAGACCAGCAGATT 59.823 55.000 0.00 0.00 0.00 2.40
4429 4472 4.778534 AGACCAGCAGATTTTGTGAATG 57.221 40.909 0.00 0.00 0.00 2.67
4473 4516 4.764050 TTGTCTGAAGTTTAGGTGACCA 57.236 40.909 3.63 0.00 0.00 4.02
4494 4537 6.586344 ACCACACTGATAGAATCATAACAGG 58.414 40.000 0.00 0.00 38.85 4.00
4638 4693 5.007724 CGAGAAAATAGAACATGGTTAGGCC 59.992 44.000 0.00 0.00 37.90 5.19
4697 4752 6.292488 GGCTATGAATTTGCAATTACATGTGC 60.292 38.462 9.11 18.00 41.29 4.57
4809 4865 9.651913 GATTTGAGTTCTCTTCTAATTCAGACT 57.348 33.333 1.53 0.00 31.12 3.24
4857 4913 4.080243 TGCCCCTTCCGATTTTCATTACTA 60.080 41.667 0.00 0.00 0.00 1.82
4885 4941 4.051922 CACTGAGTTCTACAAGCGAGTTT 58.948 43.478 0.00 0.00 0.00 2.66
4896 4954 3.942748 ACAAGCGAGTTTAAACAGGAACA 59.057 39.130 20.06 0.00 0.00 3.18
4949 5008 0.751643 GCATCCCTAACGGCCAACAT 60.752 55.000 2.24 0.00 0.00 2.71
5024 5085 4.201657 TGCCTTGATCACCATTACATCAG 58.798 43.478 0.00 0.00 0.00 2.90
5037 5098 5.346822 CCATTACATCAGAGCAAAAGCAAAC 59.653 40.000 0.00 0.00 0.00 2.93
5039 5100 3.973657 ACATCAGAGCAAAAGCAAACAG 58.026 40.909 0.00 0.00 0.00 3.16
5040 5101 2.497107 TCAGAGCAAAAGCAAACAGC 57.503 45.000 0.00 0.00 46.19 4.40
5141 5214 3.047857 TGCTACATTGATCCTCCATCCA 58.952 45.455 0.00 0.00 0.00 3.41
5144 5217 4.506271 GCTACATTGATCCTCCATCCATGT 60.506 45.833 6.56 6.56 45.53 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.156477 TGCTTTAGGCCCTAACAAACAAT 58.844 39.130 1.72 0.00 40.92 2.71
4 5 3.057526 CACTGCTTTAGGCCCTAACAAAC 60.058 47.826 1.72 0.00 40.92 2.93
6 7 2.554344 CCACTGCTTTAGGCCCTAACAA 60.554 50.000 1.72 0.00 40.92 2.83
10 11 1.607612 GCCACTGCTTTAGGCCCTA 59.392 57.895 0.00 0.00 42.58 3.53
11 12 2.356667 GCCACTGCTTTAGGCCCT 59.643 61.111 0.00 0.00 42.58 5.19
12 13 3.134127 CGCCACTGCTTTAGGCCC 61.134 66.667 0.00 0.00 45.56 5.80
13 14 3.134127 CCGCCACTGCTTTAGGCC 61.134 66.667 0.00 0.00 45.56 5.19
14 15 2.046314 TCCGCCACTGCTTTAGGC 60.046 61.111 0.00 0.00 44.89 3.93
15 16 2.109126 GCTCCGCCACTGCTTTAGG 61.109 63.158 0.00 0.00 34.43 2.69
16 17 3.490890 GCTCCGCCACTGCTTTAG 58.509 61.111 0.00 0.00 34.43 1.85
27 28 3.801114 ATTTAATTTTCCTGGCTCCGC 57.199 42.857 0.00 0.00 0.00 5.54
28 29 4.432712 CCAATTTAATTTTCCTGGCTCCG 58.567 43.478 0.00 0.00 0.00 4.63
29 30 4.469586 TCCCAATTTAATTTTCCTGGCTCC 59.530 41.667 0.00 0.00 0.00 4.70
30 31 5.187772 ACTCCCAATTTAATTTTCCTGGCTC 59.812 40.000 0.00 0.00 0.00 4.70
31 32 5.046376 CACTCCCAATTTAATTTTCCTGGCT 60.046 40.000 0.00 0.00 0.00 4.75
32 33 5.178061 CACTCCCAATTTAATTTTCCTGGC 58.822 41.667 0.00 0.00 0.00 4.85
33 34 5.178061 GCACTCCCAATTTAATTTTCCTGG 58.822 41.667 0.00 0.00 0.00 4.45
34 35 5.178061 GGCACTCCCAATTTAATTTTCCTG 58.822 41.667 0.00 0.00 0.00 3.86
35 36 4.843516 TGGCACTCCCAATTTAATTTTCCT 59.156 37.500 0.00 0.00 41.82 3.36
36 37 5.159273 TGGCACTCCCAATTTAATTTTCC 57.841 39.130 0.00 0.00 41.82 3.13
48 49 1.826054 CCAACGTTTGGCACTCCCA 60.826 57.895 0.00 0.00 45.17 4.37
49 50 3.039134 CCAACGTTTGGCACTCCC 58.961 61.111 0.00 0.00 45.17 4.30
57 58 4.327627 CCAAACAAGGTTTACCAACGTTTG 59.672 41.667 21.54 21.54 43.50 2.93
58 59 4.496360 CCAAACAAGGTTTACCAACGTTT 58.504 39.130 0.00 4.92 38.63 3.60
59 60 3.119065 CCCAAACAAGGTTTACCAACGTT 60.119 43.478 0.00 0.00 40.79 3.99
60 61 2.427812 CCCAAACAAGGTTTACCAACGT 59.572 45.455 1.13 0.00 38.89 3.99
61 62 2.688958 TCCCAAACAAGGTTTACCAACG 59.311 45.455 1.13 0.00 38.89 4.10
62 63 3.069016 CCTCCCAAACAAGGTTTACCAAC 59.931 47.826 1.13 0.00 38.89 3.77
63 64 3.301274 CCTCCCAAACAAGGTTTACCAA 58.699 45.455 1.13 0.00 38.89 3.67
64 65 2.425102 CCCTCCCAAACAAGGTTTACCA 60.425 50.000 1.13 0.00 38.89 3.25
65 66 2.244695 CCCTCCCAAACAAGGTTTACC 58.755 52.381 0.00 0.00 0.00 2.85
66 67 1.616865 GCCCTCCCAAACAAGGTTTAC 59.383 52.381 0.00 0.00 0.00 2.01
67 68 1.481615 GGCCCTCCCAAACAAGGTTTA 60.482 52.381 0.00 0.00 0.00 2.01
68 69 0.762842 GGCCCTCCCAAACAAGGTTT 60.763 55.000 0.00 0.00 0.00 3.27
69 70 1.152333 GGCCCTCCCAAACAAGGTT 60.152 57.895 0.00 0.00 0.00 3.50
70 71 2.399607 TGGCCCTCCCAAACAAGGT 61.400 57.895 0.00 0.00 41.82 3.50
71 72 2.525592 TGGCCCTCCCAAACAAGG 59.474 61.111 0.00 0.00 41.82 3.61
75 76 7.955800 CATTTTAATGATATGGCCCTCCCAAAC 60.956 40.741 0.00 0.00 42.19 2.93
76 77 6.043012 CATTTTAATGATATGGCCCTCCCAAA 59.957 38.462 0.00 0.00 42.19 3.28
77 78 5.543405 CATTTTAATGATATGGCCCTCCCAA 59.457 40.000 0.00 0.00 42.19 4.12
78 79 5.085920 CATTTTAATGATATGGCCCTCCCA 58.914 41.667 0.00 0.00 42.72 4.37
79 80 4.081476 GCATTTTAATGATATGGCCCTCCC 60.081 45.833 0.00 0.00 38.70 4.30
80 81 4.527816 TGCATTTTAATGATATGGCCCTCC 59.472 41.667 0.00 0.00 38.70 4.30
81 82 5.726980 TGCATTTTAATGATATGGCCCTC 57.273 39.130 0.00 0.00 38.70 4.30
82 83 6.043474 ACAATGCATTTTAATGATATGGCCCT 59.957 34.615 9.83 0.00 38.70 5.19
83 84 6.232692 ACAATGCATTTTAATGATATGGCCC 58.767 36.000 9.83 0.00 38.70 5.80
84 85 7.733402 AACAATGCATTTTAATGATATGGCC 57.267 32.000 9.83 0.00 38.70 5.36
91 92 9.049523 TGCTGTTAAAACAATGCATTTTAATGA 57.950 25.926 9.83 4.29 41.25 2.57
92 93 9.661187 TTGCTGTTAAAACAATGCATTTTAATG 57.339 25.926 9.83 10.87 41.25 1.90
96 97 8.976986 TTTTTGCTGTTAAAACAATGCATTTT 57.023 23.077 9.83 5.44 39.05 1.82
121 122 9.379791 GCCTAATACTAGTGTAAACATTGACTT 57.620 33.333 5.39 0.00 31.80 3.01
122 123 7.985752 GGCCTAATACTAGTGTAAACATTGACT 59.014 37.037 5.39 0.00 31.80 3.41
123 124 7.985752 AGGCCTAATACTAGTGTAAACATTGAC 59.014 37.037 1.29 0.00 31.80 3.18
124 125 8.086143 AGGCCTAATACTAGTGTAAACATTGA 57.914 34.615 1.29 0.00 31.80 2.57
125 126 9.826574 TTAGGCCTAATACTAGTGTAAACATTG 57.173 33.333 21.68 0.00 31.80 2.82
127 128 9.828039 GTTTAGGCCTAATACTAGTGTAAACAT 57.172 33.333 25.70 0.00 31.16 2.71
128 129 8.260114 GGTTTAGGCCTAATACTAGTGTAAACA 58.740 37.037 25.70 2.85 31.70 2.83
129 130 8.260114 TGGTTTAGGCCTAATACTAGTGTAAAC 58.740 37.037 25.70 16.69 30.65 2.01
130 131 8.378115 TGGTTTAGGCCTAATACTAGTGTAAA 57.622 34.615 25.70 5.43 31.80 2.01
131 132 7.418254 GCTGGTTTAGGCCTAATACTAGTGTAA 60.418 40.741 29.60 13.96 31.80 2.41
132 133 6.041296 GCTGGTTTAGGCCTAATACTAGTGTA 59.959 42.308 29.60 14.49 0.00 2.90
133 134 5.163332 GCTGGTTTAGGCCTAATACTAGTGT 60.163 44.000 29.60 0.00 0.00 3.55
134 135 5.298347 GCTGGTTTAGGCCTAATACTAGTG 58.702 45.833 29.60 18.78 0.00 2.74
135 136 4.038883 CGCTGGTTTAGGCCTAATACTAGT 59.961 45.833 29.60 0.00 0.00 2.57
136 137 4.280174 TCGCTGGTTTAGGCCTAATACTAG 59.720 45.833 27.68 27.68 0.00 2.57
137 138 4.038402 GTCGCTGGTTTAGGCCTAATACTA 59.962 45.833 25.70 20.26 0.00 1.82
138 139 3.036091 TCGCTGGTTTAGGCCTAATACT 58.964 45.455 25.70 0.00 0.00 2.12
139 140 3.129109 GTCGCTGGTTTAGGCCTAATAC 58.871 50.000 25.70 22.62 0.00 1.89
140 141 2.767394 TGTCGCTGGTTTAGGCCTAATA 59.233 45.455 25.70 13.67 0.00 0.98
141 142 1.557832 TGTCGCTGGTTTAGGCCTAAT 59.442 47.619 25.70 0.00 0.00 1.73
142 143 0.978151 TGTCGCTGGTTTAGGCCTAA 59.022 50.000 21.68 21.68 0.00 2.69
143 144 1.200519 ATGTCGCTGGTTTAGGCCTA 58.799 50.000 8.91 8.91 0.00 3.93
144 145 0.328258 AATGTCGCTGGTTTAGGCCT 59.672 50.000 11.78 11.78 0.00 5.19
145 146 1.940613 CTAATGTCGCTGGTTTAGGCC 59.059 52.381 0.00 0.00 0.00 5.19
352 353 0.593263 CCGCGACGGTGAATAGTACC 60.593 60.000 8.23 0.00 42.73 3.34
353 354 0.593263 CCCGCGACGGTGAATAGTAC 60.593 60.000 8.23 0.00 46.80 2.73
354 355 1.729276 CCCGCGACGGTGAATAGTA 59.271 57.895 8.23 0.00 46.80 1.82
355 356 2.493030 CCCGCGACGGTGAATAGT 59.507 61.111 8.23 0.00 46.80 2.12
356 357 2.960129 GCCCGCGACGGTGAATAG 60.960 66.667 8.23 2.56 46.80 1.73
357 358 4.858433 CGCCCGCGACGGTGAATA 62.858 66.667 8.23 0.00 46.80 1.75
373 374 6.744537 CCAAGAAAGCTATCAACTTGAAATCG 59.255 38.462 14.98 0.00 39.84 3.34
378 379 4.335416 CCCCAAGAAAGCTATCAACTTGA 58.665 43.478 14.98 0.00 39.84 3.02
383 384 1.681780 CCGCCCCAAGAAAGCTATCAA 60.682 52.381 0.00 0.00 0.00 2.57
388 389 1.603739 GAACCGCCCCAAGAAAGCT 60.604 57.895 0.00 0.00 0.00 3.74
389 390 2.962569 GAACCGCCCCAAGAAAGC 59.037 61.111 0.00 0.00 0.00 3.51
402 403 1.079750 GGGTGCTGAGACTCGAACC 60.080 63.158 13.26 13.26 0.00 3.62
414 415 2.203998 AGCTGGTAGGTGGGTGCT 60.204 61.111 0.00 0.00 0.00 4.40
415 416 1.842381 AAGAGCTGGTAGGTGGGTGC 61.842 60.000 0.00 0.00 0.00 5.01
425 426 3.439857 TGATTGCCTAAAAGAGCTGGT 57.560 42.857 0.00 0.00 0.00 4.00
429 430 4.202090 CCATCCTTGATTGCCTAAAAGAGC 60.202 45.833 0.00 0.00 0.00 4.09
464 465 1.447140 GCCGACGCATCAACCTGTA 60.447 57.895 0.00 0.00 34.03 2.74
467 468 2.031919 TTGCCGACGCATCAACCT 59.968 55.556 0.00 0.00 46.67 3.50
468 469 2.480555 CTTGCCGACGCATCAACC 59.519 61.111 0.00 0.00 46.67 3.77
479 480 3.641437 TCAAACAAATTCTCCTTGCCG 57.359 42.857 0.00 0.00 0.00 5.69
485 486 5.812127 AGCAACAACTTCAAACAAATTCTCC 59.188 36.000 0.00 0.00 0.00 3.71
490 491 8.250332 TCTAAAGAGCAACAACTTCAAACAAAT 58.750 29.630 0.00 0.00 0.00 2.32
527 528 1.446792 CAGCTGCGTCTCGACCAAT 60.447 57.895 0.00 0.00 0.00 3.16
541 542 2.283145 ATTGACCAACAAGAGCAGCT 57.717 45.000 0.00 0.00 42.02 4.24
609 610 2.435372 TGAGAGGCAAAACACCACTT 57.565 45.000 0.00 0.00 0.00 3.16
639 640 6.966534 ACAAGAATTCTGACAAACTTCCAT 57.033 33.333 9.17 0.00 0.00 3.41
652 658 9.193806 AGGCACATGATTAAATACAAGAATTCT 57.806 29.630 0.88 0.88 0.00 2.40
804 811 3.196254 GTGGGAAGATAGGTGGTCGTTTA 59.804 47.826 0.00 0.00 0.00 2.01
816 824 2.750141 AGCCTACTCGTGGGAAGATA 57.250 50.000 3.41 0.00 32.26 1.98
927 942 3.732849 GGGGCAAGAGGGGGAGTG 61.733 72.222 0.00 0.00 0.00 3.51
1140 1155 2.203938 AAGGACAGGGAAGGCGGA 60.204 61.111 0.00 0.00 0.00 5.54
1188 1203 3.452786 CTTCGGCAGGGAGCTCGA 61.453 66.667 7.83 0.00 44.79 4.04
1190 1205 4.847444 GGCTTCGGCAGGGAGCTC 62.847 72.222 4.71 4.71 44.79 4.09
1433 1448 0.878523 TCACTTCAAACGCCCGACAG 60.879 55.000 0.00 0.00 0.00 3.51
1440 1455 2.943653 CCCGGTCACTTCAAACGC 59.056 61.111 0.00 0.00 0.00 4.84
1478 1500 2.608752 GCATCTGCAGAAACCACCAAAG 60.609 50.000 22.50 2.12 41.59 2.77
1760 1789 4.165758 ACGGAGGGAGTAGATAGTTACAGT 59.834 45.833 0.00 0.00 0.00 3.55
1761 1790 4.716794 ACGGAGGGAGTAGATAGTTACAG 58.283 47.826 0.00 0.00 0.00 2.74
1771 1800 5.322754 TGAATATAGGAACGGAGGGAGTAG 58.677 45.833 0.00 0.00 0.00 2.57
1772 1801 5.329191 TGAATATAGGAACGGAGGGAGTA 57.671 43.478 0.00 0.00 0.00 2.59
1773 1802 4.194678 TGAATATAGGAACGGAGGGAGT 57.805 45.455 0.00 0.00 0.00 3.85
1774 1803 5.482908 CATTGAATATAGGAACGGAGGGAG 58.517 45.833 0.00 0.00 0.00 4.30
1775 1804 4.262894 GCATTGAATATAGGAACGGAGGGA 60.263 45.833 0.00 0.00 0.00 4.20
1776 1805 4.003648 GCATTGAATATAGGAACGGAGGG 58.996 47.826 0.00 0.00 0.00 4.30
1777 1806 4.641396 TGCATTGAATATAGGAACGGAGG 58.359 43.478 0.00 0.00 0.00 4.30
1778 1807 6.260936 AGTTTGCATTGAATATAGGAACGGAG 59.739 38.462 0.00 0.00 0.00 4.63
1779 1808 6.119536 AGTTTGCATTGAATATAGGAACGGA 58.880 36.000 0.00 0.00 0.00 4.69
1780 1809 6.377327 AGTTTGCATTGAATATAGGAACGG 57.623 37.500 0.00 0.00 0.00 4.44
1781 1810 7.063456 CGTAGTTTGCATTGAATATAGGAACG 58.937 38.462 0.00 0.00 0.00 3.95
1782 1811 7.916552 ACGTAGTTTGCATTGAATATAGGAAC 58.083 34.615 0.00 0.00 37.78 3.62
1783 1812 9.037737 GTACGTAGTTTGCATTGAATATAGGAA 57.962 33.333 0.00 0.00 37.78 3.36
1784 1813 7.380333 CGTACGTAGTTTGCATTGAATATAGGA 59.620 37.037 7.22 0.00 37.78 2.94
1785 1814 7.358931 CCGTACGTAGTTTGCATTGAATATAGG 60.359 40.741 15.21 0.00 37.78 2.57
1786 1815 7.380333 TCCGTACGTAGTTTGCATTGAATATAG 59.620 37.037 15.21 0.00 37.78 1.31
1787 1816 7.201835 TCCGTACGTAGTTTGCATTGAATATA 58.798 34.615 15.21 0.00 37.78 0.86
1788 1817 6.044046 TCCGTACGTAGTTTGCATTGAATAT 58.956 36.000 15.21 0.00 37.78 1.28
1789 1818 5.409211 TCCGTACGTAGTTTGCATTGAATA 58.591 37.500 15.21 0.00 37.78 1.75
1790 1819 4.247258 TCCGTACGTAGTTTGCATTGAAT 58.753 39.130 15.21 0.00 37.78 2.57
1791 1820 3.651206 TCCGTACGTAGTTTGCATTGAA 58.349 40.909 15.21 0.00 37.78 2.69
1792 1821 3.300852 TCCGTACGTAGTTTGCATTGA 57.699 42.857 15.21 0.00 37.78 2.57
1793 1822 3.369756 ACATCCGTACGTAGTTTGCATTG 59.630 43.478 15.21 0.00 37.78 2.82
1794 1823 3.592059 ACATCCGTACGTAGTTTGCATT 58.408 40.909 15.21 0.00 37.78 3.56
1795 1824 3.241067 ACATCCGTACGTAGTTTGCAT 57.759 42.857 15.21 0.00 37.78 3.96
1796 1825 2.728690 ACATCCGTACGTAGTTTGCA 57.271 45.000 15.21 0.00 37.78 4.08
1797 1826 7.479916 GTCTATATACATCCGTACGTAGTTTGC 59.520 40.741 15.21 0.00 37.78 3.68
1798 1827 8.498358 TGTCTATATACATCCGTACGTAGTTTG 58.502 37.037 15.21 6.57 37.78 2.93
1799 1828 8.607441 TGTCTATATACATCCGTACGTAGTTT 57.393 34.615 15.21 7.24 37.78 2.66
1800 1829 8.783833 ATGTCTATATACATCCGTACGTAGTT 57.216 34.615 15.21 0.00 37.47 2.24
1826 1855 9.428097 GTTTGCATTGAAATCCTAGAAAGAAAT 57.572 29.630 0.00 0.00 0.00 2.17
1827 1856 8.641541 AGTTTGCATTGAAATCCTAGAAAGAAA 58.358 29.630 0.00 0.00 0.00 2.52
1828 1857 8.181904 AGTTTGCATTGAAATCCTAGAAAGAA 57.818 30.769 0.00 0.00 0.00 2.52
1829 1858 7.765695 AGTTTGCATTGAAATCCTAGAAAGA 57.234 32.000 0.00 0.00 0.00 2.52
1830 1859 8.514594 TGTAGTTTGCATTGAAATCCTAGAAAG 58.485 33.333 0.00 0.00 0.00 2.62
1831 1860 8.402798 TGTAGTTTGCATTGAAATCCTAGAAA 57.597 30.769 0.00 0.00 0.00 2.52
1832 1861 7.994425 TGTAGTTTGCATTGAAATCCTAGAA 57.006 32.000 0.00 0.00 0.00 2.10
1833 1862 9.109393 GTATGTAGTTTGCATTGAAATCCTAGA 57.891 33.333 0.00 0.00 0.00 2.43
1834 1863 8.064222 CGTATGTAGTTTGCATTGAAATCCTAG 58.936 37.037 0.00 0.00 0.00 3.02
1835 1864 7.011950 CCGTATGTAGTTTGCATTGAAATCCTA 59.988 37.037 0.00 0.00 0.00 2.94
1836 1865 6.183360 CCGTATGTAGTTTGCATTGAAATCCT 60.183 38.462 0.00 0.00 0.00 3.24
1837 1866 5.971202 CCGTATGTAGTTTGCATTGAAATCC 59.029 40.000 0.00 0.00 0.00 3.01
1838 1867 6.781138 TCCGTATGTAGTTTGCATTGAAATC 58.219 36.000 0.00 0.00 0.00 2.17
1839 1868 6.751514 TCCGTATGTAGTTTGCATTGAAAT 57.248 33.333 0.00 0.00 0.00 2.17
1840 1869 6.150307 ACATCCGTATGTAGTTTGCATTGAAA 59.850 34.615 0.00 0.00 44.66 2.69
1841 1870 5.645929 ACATCCGTATGTAGTTTGCATTGAA 59.354 36.000 0.00 0.00 44.66 2.69
1842 1871 5.182487 ACATCCGTATGTAGTTTGCATTGA 58.818 37.500 0.00 0.00 44.66 2.57
1843 1872 5.484173 ACATCCGTATGTAGTTTGCATTG 57.516 39.130 0.00 0.00 44.66 2.82
1878 1907 8.677300 GCAAAATGGATGAATCTACACTCTAAA 58.323 33.333 0.00 0.00 0.00 1.85
1879 1908 8.049117 AGCAAAATGGATGAATCTACACTCTAA 58.951 33.333 0.00 0.00 0.00 2.10
1880 1909 7.568349 AGCAAAATGGATGAATCTACACTCTA 58.432 34.615 0.00 0.00 0.00 2.43
1881 1910 6.421485 AGCAAAATGGATGAATCTACACTCT 58.579 36.000 0.00 0.00 0.00 3.24
1882 1911 6.238593 GGAGCAAAATGGATGAATCTACACTC 60.239 42.308 0.00 0.00 0.00 3.51
1883 1912 5.591877 GGAGCAAAATGGATGAATCTACACT 59.408 40.000 0.00 0.00 0.00 3.55
1884 1913 5.504665 CGGAGCAAAATGGATGAATCTACAC 60.505 44.000 0.00 0.00 0.00 2.90
1885 1914 4.576053 CGGAGCAAAATGGATGAATCTACA 59.424 41.667 0.00 0.00 0.00 2.74
1886 1915 4.576463 ACGGAGCAAAATGGATGAATCTAC 59.424 41.667 0.00 0.00 0.00 2.59
1887 1916 4.780815 ACGGAGCAAAATGGATGAATCTA 58.219 39.130 0.00 0.00 0.00 1.98
1888 1917 3.624777 ACGGAGCAAAATGGATGAATCT 58.375 40.909 0.00 0.00 0.00 2.40
1889 1918 5.009010 ACATACGGAGCAAAATGGATGAATC 59.991 40.000 0.00 0.00 0.00 2.52
1890 1919 4.889409 ACATACGGAGCAAAATGGATGAAT 59.111 37.500 0.00 0.00 0.00 2.57
1891 1920 4.269183 ACATACGGAGCAAAATGGATGAA 58.731 39.130 0.00 0.00 0.00 2.57
1892 1921 3.884895 ACATACGGAGCAAAATGGATGA 58.115 40.909 0.00 0.00 0.00 2.92
1893 1922 4.214119 CCTACATACGGAGCAAAATGGATG 59.786 45.833 0.00 0.00 0.00 3.51
1894 1923 4.389374 CCTACATACGGAGCAAAATGGAT 58.611 43.478 0.00 0.00 0.00 3.41
1895 1924 3.804036 CCTACATACGGAGCAAAATGGA 58.196 45.455 0.00 0.00 0.00 3.41
1896 1925 2.290641 GCCTACATACGGAGCAAAATGG 59.709 50.000 0.00 0.00 0.00 3.16
1897 1926 3.002656 CAGCCTACATACGGAGCAAAATG 59.997 47.826 0.00 0.00 0.00 2.32
1898 1927 3.206150 CAGCCTACATACGGAGCAAAAT 58.794 45.455 0.00 0.00 0.00 1.82
1899 1928 2.027561 ACAGCCTACATACGGAGCAAAA 60.028 45.455 0.00 0.00 0.00 2.44
1900 1929 1.553248 ACAGCCTACATACGGAGCAAA 59.447 47.619 0.00 0.00 0.00 3.68
1901 1930 1.191535 ACAGCCTACATACGGAGCAA 58.808 50.000 0.00 0.00 0.00 3.91
1902 1931 1.954382 CTACAGCCTACATACGGAGCA 59.046 52.381 0.00 0.00 0.00 4.26
1903 1932 1.955080 ACTACAGCCTACATACGGAGC 59.045 52.381 0.00 0.00 0.00 4.70
1904 1933 3.211865 TCACTACAGCCTACATACGGAG 58.788 50.000 0.00 0.00 0.00 4.63
1905 1934 3.286329 TCACTACAGCCTACATACGGA 57.714 47.619 0.00 0.00 0.00 4.69
1906 1935 4.380841 TTTCACTACAGCCTACATACGG 57.619 45.455 0.00 0.00 0.00 4.02
1907 1936 5.833082 AGATTTCACTACAGCCTACATACG 58.167 41.667 0.00 0.00 0.00 3.06
1908 1937 7.045126 AGAGATTTCACTACAGCCTACATAC 57.955 40.000 0.00 0.00 0.00 2.39
1909 1938 8.762481 TTAGAGATTTCACTACAGCCTACATA 57.238 34.615 0.00 0.00 0.00 2.29
1910 1939 7.661536 TTAGAGATTTCACTACAGCCTACAT 57.338 36.000 0.00 0.00 0.00 2.29
1911 1940 7.476540 TTTAGAGATTTCACTACAGCCTACA 57.523 36.000 0.00 0.00 0.00 2.74
1912 1941 8.773404 TTTTTAGAGATTTCACTACAGCCTAC 57.227 34.615 0.00 0.00 0.00 3.18
1913 1942 8.812972 TCTTTTTAGAGATTTCACTACAGCCTA 58.187 33.333 0.00 0.00 0.00 3.93
1914 1943 7.604545 GTCTTTTTAGAGATTTCACTACAGCCT 59.395 37.037 0.00 0.00 0.00 4.58
1915 1944 7.604545 AGTCTTTTTAGAGATTTCACTACAGCC 59.395 37.037 0.00 0.00 0.00 4.85
1916 1945 8.541133 AGTCTTTTTAGAGATTTCACTACAGC 57.459 34.615 0.00 0.00 0.00 4.40
1933 1962 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1934 1963 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1935 1964 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1936 1965 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1937 1966 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1938 1967 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1939 1968 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1940 1969 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1941 1970 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
1942 1971 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
1943 1972 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1944 1973 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1945 1974 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1946 1975 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1947 1976 3.782523 TCTACTACTCCCTCCGTTCCTAA 59.217 47.826 0.00 0.00 0.00 2.69
1948 1977 3.387962 TCTACTACTCCCTCCGTTCCTA 58.612 50.000 0.00 0.00 0.00 2.94
1949 1978 2.203584 TCTACTACTCCCTCCGTTCCT 58.796 52.381 0.00 0.00 0.00 3.36
1950 1979 2.687425 GTTCTACTACTCCCTCCGTTCC 59.313 54.545 0.00 0.00 0.00 3.62
1951 1980 3.377798 CAGTTCTACTACTCCCTCCGTTC 59.622 52.174 0.00 0.00 0.00 3.95
1952 1981 3.245193 ACAGTTCTACTACTCCCTCCGTT 60.245 47.826 0.00 0.00 0.00 4.44
1953 1982 2.308275 ACAGTTCTACTACTCCCTCCGT 59.692 50.000 0.00 0.00 0.00 4.69
1954 1983 3.002038 ACAGTTCTACTACTCCCTCCG 57.998 52.381 0.00 0.00 0.00 4.63
1955 1984 5.741962 AAAACAGTTCTACTACTCCCTCC 57.258 43.478 0.00 0.00 0.00 4.30
1956 1985 8.751242 AGATAAAAACAGTTCTACTACTCCCTC 58.249 37.037 0.00 0.00 0.00 4.30
1957 1986 8.532819 CAGATAAAAACAGTTCTACTACTCCCT 58.467 37.037 0.00 0.00 0.00 4.20
1958 1987 8.312564 ACAGATAAAAACAGTTCTACTACTCCC 58.687 37.037 0.00 0.00 0.00 4.30
1959 1988 9.708092 AACAGATAAAAACAGTTCTACTACTCC 57.292 33.333 0.00 0.00 0.00 3.85
1979 2008 5.408604 CCACACTAAGCGAGTTTTAACAGAT 59.591 40.000 0.00 0.00 35.64 2.90
2019 2048 1.534163 GCACCTTACCTTGGTTCGTTC 59.466 52.381 0.00 0.00 35.28 3.95
2030 2059 0.967380 AGCAGCAATGGCACCTTACC 60.967 55.000 0.00 0.00 44.61 2.85
2093 2122 4.479786 AATCTACCAGTGAAGAAGCTCC 57.520 45.455 0.00 0.00 0.00 4.70
2129 2158 6.038382 AGTCATGCTCAGAAAATTATCTGCAG 59.962 38.462 7.63 7.63 45.21 4.41
2131 2160 6.374565 AGTCATGCTCAGAAAATTATCTGC 57.625 37.500 0.00 0.00 45.21 4.26
2156 2185 1.448540 CTGGACACCGGCACAGATC 60.449 63.158 0.00 0.00 32.86 2.75
2166 2195 1.639635 ATGGCCTGATCCTGGACACC 61.640 60.000 11.97 0.00 43.11 4.16
2252 2281 9.243637 CAACACCGAGAAAGATGAAAATAAAAA 57.756 29.630 0.00 0.00 0.00 1.94
2547 2586 8.871686 AGAAGACACATAAAATCACCAAAAAC 57.128 30.769 0.00 0.00 0.00 2.43
2548 2587 9.883142 AAAGAAGACACATAAAATCACCAAAAA 57.117 25.926 0.00 0.00 0.00 1.94
2647 2686 7.885399 GCAGGGGTAATATTGATAAAGATGACT 59.115 37.037 0.00 0.00 0.00 3.41
2721 2760 4.641396 AGTCATTCAATGTCCTCAAACGA 58.359 39.130 0.00 0.00 0.00 3.85
2744 2786 7.870954 TGTCAAATATTCGACACAACTAAGTCT 59.129 33.333 5.09 0.00 37.23 3.24
2830 2872 2.420642 GCAGTCTGTCAGCTTCATCAA 58.579 47.619 0.93 0.00 0.00 2.57
2847 2889 1.352156 GCAAGGAAGACCGTACGCAG 61.352 60.000 10.49 0.00 41.83 5.18
2855 2897 1.004745 TCCTCCATTGCAAGGAAGACC 59.995 52.381 13.66 0.00 38.74 3.85
2909 2951 7.584122 ATCTAACGTCCTCATATTGTGTAGT 57.416 36.000 0.00 0.00 0.00 2.73
2930 2972 4.773674 TGTTTGATCTTGGGCAATGAATCT 59.226 37.500 0.00 0.00 0.00 2.40
2966 3008 7.225734 GGAGCAAATATCTCTAGTGTTTCCTTC 59.774 40.741 0.00 0.00 0.00 3.46
2978 3020 3.144506 CGCCAATGGAGCAAATATCTCT 58.855 45.455 2.05 0.00 0.00 3.10
3077 3119 2.766313 TGAAGGTTGGATGACAGTTCG 58.234 47.619 0.00 0.00 0.00 3.95
3141 3183 1.001641 CCTGAAGGGCCTGTTCCAG 60.002 63.158 6.92 12.30 0.00 3.86
3172 3214 4.344978 CCTCCCTGATATGGAACGATAGA 58.655 47.826 0.00 0.00 41.38 1.98
3245 3287 7.722949 AAGGACACCATAATGAAAACATGAT 57.277 32.000 0.00 0.00 0.00 2.45
3345 3388 9.008965 TGAAGTTAGTGCAGCAATTATCTAAAA 57.991 29.630 0.00 0.00 0.00 1.52
3346 3389 8.560355 TGAAGTTAGTGCAGCAATTATCTAAA 57.440 30.769 0.00 0.00 0.00 1.85
3347 3390 8.450964 GTTGAAGTTAGTGCAGCAATTATCTAA 58.549 33.333 0.00 0.00 0.00 2.10
3357 3400 3.365364 GGTCATGTTGAAGTTAGTGCAGC 60.365 47.826 0.00 0.00 0.00 5.25
3412 3455 3.373748 TCACATTAGCATGTTTAGTGGCG 59.626 43.478 0.00 0.00 41.16 5.69
3581 3624 1.147153 GGGGCTGCTGACATAGTCC 59.853 63.158 0.00 2.65 37.97 3.85
3642 3685 9.643693 CCTTGACATACTTTTCTTTTTATGCAT 57.356 29.630 3.79 3.79 0.00 3.96
3643 3686 8.637986 ACCTTGACATACTTTTCTTTTTATGCA 58.362 29.630 0.00 0.00 0.00 3.96
3645 3688 8.915654 GCACCTTGACATACTTTTCTTTTTATG 58.084 33.333 0.00 0.00 0.00 1.90
3646 3689 8.860088 AGCACCTTGACATACTTTTCTTTTTAT 58.140 29.630 0.00 0.00 0.00 1.40
3647 3690 8.232913 AGCACCTTGACATACTTTTCTTTTTA 57.767 30.769 0.00 0.00 0.00 1.52
3648 3691 7.112452 AGCACCTTGACATACTTTTCTTTTT 57.888 32.000 0.00 0.00 0.00 1.94
3653 3696 6.803154 AGTTAGCACCTTGACATACTTTTC 57.197 37.500 0.00 0.00 0.00 2.29
3657 3700 6.316390 GCATTAAGTTAGCACCTTGACATACT 59.684 38.462 0.00 0.00 0.00 2.12
3666 3709 7.168905 AGTAAAGAAGCATTAAGTTAGCACCT 58.831 34.615 0.00 0.00 0.00 4.00
3678 3721 6.775708 TGGTACCTACAAGTAAAGAAGCATT 58.224 36.000 14.36 0.00 0.00 3.56
3688 3731 3.429822 GCAGCGATTGGTACCTACAAGTA 60.430 47.826 14.36 0.00 0.00 2.24
3826 3869 3.790091 CAGAGATGAAGAGCAATTCCGA 58.210 45.455 0.00 0.00 0.00 4.55
3829 3872 3.312973 CAGGCAGAGATGAAGAGCAATTC 59.687 47.826 0.00 0.00 0.00 2.17
3832 3875 1.904537 TCAGGCAGAGATGAAGAGCAA 59.095 47.619 0.00 0.00 0.00 3.91
4057 4100 5.815740 AGCGTGAAATATTATGACGGTTCTT 59.184 36.000 10.85 0.00 37.47 2.52
4058 4101 5.357257 AGCGTGAAATATTATGACGGTTCT 58.643 37.500 10.85 1.85 37.47 3.01
4084 4127 4.382754 GCAACTTTGGTTAATCAGAAAGCG 59.617 41.667 0.88 0.00 33.88 4.68
4099 4142 7.672351 TCTAAATTAACACGTTGCAACTTTG 57.328 32.000 26.09 23.02 0.00 2.77
4110 4153 5.348724 TCTGCTGCTCTTCTAAATTAACACG 59.651 40.000 0.00 0.00 0.00 4.49
4184 4227 8.801882 ATAGGTCCAGTATTTTCGAATTTTGA 57.198 30.769 0.00 0.00 0.00 2.69
4316 4359 3.817084 CAGACTTGCATTGAGTTGAAGGA 59.183 43.478 0.00 0.00 0.00 3.36
4327 4370 1.630369 TGTAGCCTCCAGACTTGCATT 59.370 47.619 0.00 0.00 0.00 3.56
4334 4377 0.755686 CCCTCATGTAGCCTCCAGAC 59.244 60.000 0.00 0.00 0.00 3.51
4356 4399 1.686052 GTGGTCAGGCATTTGGTTGAA 59.314 47.619 0.00 0.00 0.00 2.69
4368 4411 4.778415 CGCGAGACGGTGGTCAGG 62.778 72.222 0.00 0.00 45.92 3.86
4420 4463 5.750650 CGCTGTCATATATGCATTCACAAA 58.249 37.500 3.54 0.00 0.00 2.83
4429 4472 1.436600 AGCTGCGCTGTCATATATGC 58.563 50.000 16.05 4.27 37.57 3.14
4453 4496 3.452990 TGTGGTCACCTAAACTTCAGACA 59.547 43.478 0.00 0.00 0.00 3.41
4473 4516 8.417106 CACTACCTGTTATGATTCTATCAGTGT 58.583 37.037 0.00 0.00 43.53 3.55
4529 4572 9.516314 AACTATTTTTGCTCTACTTGAACAAAC 57.484 29.630 0.00 0.00 39.55 2.93
4638 4693 7.721286 ACAAGTAGAGAACTGAAATCACTTG 57.279 36.000 9.02 9.02 44.42 3.16
4857 4913 4.035208 CGCTTGTAGAACTCAGTGGTTTTT 59.965 41.667 0.00 0.00 0.00 1.94
4885 4941 6.908284 CGTTTCGATCTTTTTGTTCCTGTTTA 59.092 34.615 0.00 0.00 0.00 2.01
4896 4954 4.201970 TGTTGGCTTCGTTTCGATCTTTTT 60.202 37.500 0.00 0.00 35.23 1.94
4949 5008 2.076184 GTATGGGGTGGCTGGCCTA 61.076 63.158 13.05 0.00 36.94 3.93
5141 5214 3.023119 TGAAGTGTTCACAGCCAAACAT 58.977 40.909 5.74 0.00 37.67 2.71
5144 5217 4.431809 CAAATGAAGTGTTCACAGCCAAA 58.568 39.130 5.74 0.00 43.48 3.28
5208 5281 4.637276 TGCAGATAAAGGAGTCGTCAAAA 58.363 39.130 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.