Multiple sequence alignment - TraesCS2B01G196900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G196900 chr2B 100.000 3213 0 0 1 3213 174828665 174825453 0.000000e+00 5934.0
1 TraesCS2B01G196900 chr2B 91.398 93 8 0 2589 2681 461094795 461094703 9.360000e-26 128.0
2 TraesCS2B01G196900 chr2B 87.654 81 7 2 2727 2804 62623596 62623516 1.230000e-14 91.6
3 TraesCS2B01G196900 chr2B 87.654 81 7 2 2727 2804 62625411 62625331 1.230000e-14 91.6
4 TraesCS2B01G196900 chr2D 91.710 2907 174 24 1 2866 121703386 121700506 0.000000e+00 3971.0
5 TraesCS2B01G196900 chr2D 88.889 378 38 3 2146 2523 121546371 121546744 2.260000e-126 462.0
6 TraesCS2B01G196900 chr2D 91.398 93 8 0 2589 2681 389280072 389279980 9.360000e-26 128.0
7 TraesCS2B01G196900 chr2D 100.000 29 0 0 128 156 33904394 33904366 2.000000e-03 54.7
8 TraesCS2B01G196900 chr2A 89.720 1537 108 24 1 1509 125900600 125899086 0.000000e+00 1917.0
9 TraesCS2B01G196900 chr2A 87.168 865 84 8 661 1509 125899084 125898231 0.000000e+00 957.0
10 TraesCS2B01G196900 chr2A 88.860 386 35 1 1132 1509 125897792 125897407 4.850000e-128 468.0
11 TraesCS2B01G196900 chr2A 85.618 445 47 6 661 1097 125898229 125897794 4.890000e-123 451.0
12 TraesCS2B01G196900 chr2A 84.988 433 53 4 810 1240 125796925 125796503 2.290000e-116 429.0
13 TraesCS2B01G196900 chr2A 89.189 222 16 3 661 874 125897405 125897184 1.470000e-68 270.0
14 TraesCS2B01G196900 chr2A 89.247 93 10 0 2589 2681 526066775 526066683 2.030000e-22 117.0
15 TraesCS2B01G196900 chr7A 91.089 101 6 2 2584 2681 597553002 597552902 2.010000e-27 134.0
16 TraesCS2B01G196900 chr7A 90.217 92 9 0 2590 2681 177331497 177331406 1.570000e-23 121.0
17 TraesCS2B01G196900 chr1D 90.816 98 7 1 2586 2681 349803228 349803131 2.600000e-26 130.0
18 TraesCS2B01G196900 chr1D 83.750 80 7 6 2730 2804 45494344 45494266 1.600000e-08 71.3
19 TraesCS2B01G196900 chr1D 93.333 45 1 2 2762 2804 45496216 45496172 7.440000e-07 65.8
20 TraesCS2B01G196900 chr7B 90.426 94 7 1 2590 2681 140935682 140935589 4.350000e-24 122.0
21 TraesCS2B01G196900 chr3A 75.940 266 45 12 1286 1539 20232630 20232888 5.630000e-23 119.0
22 TraesCS2B01G196900 chr1A 88.776 98 9 1 2586 2681 450560624 450560527 5.630000e-23 119.0
23 TraesCS2B01G196900 chr3B 77.717 184 28 7 1286 1458 23709192 23709373 2.040000e-17 100.0
24 TraesCS2B01G196900 chr6D 88.095 84 8 1 2729 2810 57999725 57999642 7.340000e-17 99.0
25 TraesCS2B01G196900 chr6D 85.714 77 9 1 2730 2804 63799689 63799613 2.660000e-11 80.5
26 TraesCS2B01G196900 chr5A 87.143 70 5 2 2730 2796 705848316 705848384 3.440000e-10 76.8
27 TraesCS2B01G196900 chr4A 93.878 49 3 0 2756 2804 563405362 563405314 1.240000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G196900 chr2B 174825453 174828665 3212 True 5934.0 5934 100.000 1 3213 1 chr2B.!!$R1 3212
1 TraesCS2B01G196900 chr2D 121700506 121703386 2880 True 3971.0 3971 91.710 1 2866 1 chr2D.!!$R2 2865
2 TraesCS2B01G196900 chr2A 125897184 125900600 3416 True 812.6 1917 88.111 1 1509 5 chr2A.!!$R3 1508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 1724 1.003839 TCTGGGTGTCAATCGGTGC 60.004 57.895 0.00 0.0 0.00 5.01 F
1266 2992 0.389948 GTGAGAACTGGCCTACCACG 60.390 60.000 3.32 0.0 42.67 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 3928 0.595567 TCCGAACAACGAGTGGAACG 60.596 55.0 0.00 0.0 45.77 3.95 R
3009 4755 0.107703 CCCATTAGACAGCGCTCCAA 60.108 55.0 7.13 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.336632 GGTGCTGCTGGAGATCCTCT 61.337 60.000 0.00 0.00 36.82 3.69
490 494 2.717809 GCCGACGACGACAAGAAGC 61.718 63.158 9.28 0.00 42.66 3.86
555 562 3.606687 TGTGCTGTACATACGAGAGAGA 58.393 45.455 0.00 0.00 33.42 3.10
556 563 4.007659 TGTGCTGTACATACGAGAGAGAA 58.992 43.478 0.00 0.00 33.42 2.87
677 1561 6.959639 TCTTTTGCTTTGGATCTGTAAGTT 57.040 33.333 0.00 0.00 33.76 2.66
734 1618 7.343316 AGTGGAGCTATATCAAACAAGAGTACT 59.657 37.037 0.00 0.00 0.00 2.73
759 1643 8.909708 TGATTGATCAACATAACGGAAATTTC 57.090 30.769 11.07 9.83 33.08 2.17
799 1687 2.640346 TGAAGCTACGACAATGCGTA 57.360 45.000 8.93 8.93 43.61 4.42
804 1694 3.116300 AGCTACGACAATGCGTATTCAG 58.884 45.455 9.52 3.09 44.65 3.02
806 1707 3.061139 GCTACGACAATGCGTATTCAGTC 60.061 47.826 9.52 1.34 44.65 3.51
823 1724 1.003839 TCTGGGTGTCAATCGGTGC 60.004 57.895 0.00 0.00 0.00 5.01
857 1760 2.649331 ACAATCGGTCTTCTACGTGG 57.351 50.000 0.00 0.00 0.00 4.94
867 1770 2.227388 TCTTCTACGTGGTCTCGGTTTC 59.773 50.000 0.00 0.00 34.94 2.78
874 1777 1.039068 TGGTCTCGGTTTCGGTTGTA 58.961 50.000 0.00 0.00 36.95 2.41
875 1778 1.269726 TGGTCTCGGTTTCGGTTGTAC 60.270 52.381 0.00 0.00 36.95 2.90
876 1779 1.269726 GGTCTCGGTTTCGGTTGTACA 60.270 52.381 0.00 0.00 36.95 2.90
877 1780 2.472816 GTCTCGGTTTCGGTTGTACAA 58.527 47.619 3.59 3.59 36.95 2.41
878 1781 3.062042 GTCTCGGTTTCGGTTGTACAAT 58.938 45.455 12.26 0.00 36.95 2.71
879 1782 3.122445 GTCTCGGTTTCGGTTGTACAATC 59.878 47.826 12.26 10.52 36.95 2.67
880 1783 3.006110 TCTCGGTTTCGGTTGTACAATCT 59.994 43.478 16.56 0.00 36.95 2.40
881 1784 3.319755 TCGGTTTCGGTTGTACAATCTC 58.680 45.455 16.56 6.85 36.95 2.75
882 1785 3.006110 TCGGTTTCGGTTGTACAATCTCT 59.994 43.478 16.56 0.00 36.95 3.10
883 1786 3.744426 CGGTTTCGGTTGTACAATCTCTT 59.256 43.478 16.56 0.00 0.00 2.85
885 1788 5.277634 CGGTTTCGGTTGTACAATCTCTTTT 60.278 40.000 16.56 0.00 0.00 2.27
886 1789 6.500910 GGTTTCGGTTGTACAATCTCTTTTT 58.499 36.000 16.56 0.00 0.00 1.94
911 1814 9.771534 TTTTATTTGGAAATCTTGTCCGAAAAT 57.228 25.926 0.00 0.00 41.04 1.82
918 1821 9.893634 TGGAAATCTTGTCCGAAAATTACTATA 57.106 29.630 0.00 0.00 38.06 1.31
970 1873 3.005472 TCCACTACCAATAGCATCGTAGC 59.995 47.826 0.00 0.00 33.06 3.58
994 1897 4.987832 TGTTTGTTTTTCTGCATGTACGT 58.012 34.783 0.00 0.00 0.00 3.57
996 1899 3.889196 TGTTTTTCTGCATGTACGTCC 57.111 42.857 0.00 0.00 0.00 4.79
1010 1913 0.670546 ACGTCCGCCATGAAGACTTG 60.671 55.000 0.00 0.00 0.00 3.16
1031 1934 0.617935 AAGAAGCAGAGGAGGAAGGC 59.382 55.000 0.00 0.00 0.00 4.35
1032 1935 0.546267 AGAAGCAGAGGAGGAAGGCA 60.546 55.000 0.00 0.00 0.00 4.75
1086 1989 1.146930 GATCCTGATTCGGCTGCCA 59.853 57.895 20.29 0.00 0.00 4.92
1112 2015 3.343972 GCTCCTGCGTTTCAAGCA 58.656 55.556 0.00 0.00 42.99 3.91
1115 2018 0.455633 CTCCTGCGTTTCAAGCATGC 60.456 55.000 10.51 10.51 44.26 4.06
1116 2019 1.798725 CCTGCGTTTCAAGCATGCG 60.799 57.895 13.01 0.00 44.26 4.73
1151 2054 1.813513 GCAATCATATCCGACCCCTG 58.186 55.000 0.00 0.00 0.00 4.45
1152 2055 1.611673 GCAATCATATCCGACCCCTGG 60.612 57.143 0.00 0.00 0.00 4.45
1187 2913 1.814772 CTCCAGCTATCCGCCTCCAG 61.815 65.000 0.00 0.00 40.39 3.86
1243 2969 0.955905 TTGTCTCGACCGTGTCATCA 59.044 50.000 5.15 0.00 32.09 3.07
1266 2992 0.389948 GTGAGAACTGGCCTACCACG 60.390 60.000 3.32 0.00 42.67 4.94
1305 3031 4.715523 TACCGGTGGCAGCAAGGC 62.716 66.667 19.93 0.00 44.50 4.35
1338 3064 2.046023 CTCGTGCATGGCAGGGAA 60.046 61.111 5.98 0.00 43.44 3.97
1555 3289 4.840005 CGCTCCTTCTTCCGCCCC 62.840 72.222 0.00 0.00 0.00 5.80
1567 3301 2.335369 CGCCCCCGAGATCGTAAG 59.665 66.667 1.09 0.00 37.74 2.34
1597 3331 0.918983 TCAACATGGGGATGGAGGTC 59.081 55.000 0.00 0.00 0.00 3.85
1635 3372 4.114997 CCGCCGCCATTGTTGGAC 62.115 66.667 0.00 0.00 46.92 4.02
1663 3400 2.504519 GCAGATCCACCGTACCCC 59.495 66.667 0.00 0.00 0.00 4.95
1733 3470 2.700371 ACCATCGACATAAGCCATCTCA 59.300 45.455 0.00 0.00 0.00 3.27
1738 3475 2.742856 CGACATAAGCCATCTCAAGCCA 60.743 50.000 0.00 0.00 0.00 4.75
1744 3481 1.296392 CCATCTCAAGCCACGTCCA 59.704 57.895 0.00 0.00 0.00 4.02
1872 3609 2.467880 GGGGGAGTTATGTCTGACTGA 58.532 52.381 9.51 0.00 0.00 3.41
1904 3647 3.302347 GAGCCTGACGACCACCCTG 62.302 68.421 0.00 0.00 0.00 4.45
1917 3660 1.773052 CCACCCTGTGATGATCTGGAT 59.227 52.381 0.00 0.00 35.23 3.41
1918 3661 2.974794 CCACCCTGTGATGATCTGGATA 59.025 50.000 0.00 0.00 35.23 2.59
1931 3674 3.081710 TCTGGATACTCGTGGAAGACA 57.918 47.619 0.00 0.00 37.61 3.41
1943 3686 3.175710 AAGACAACGGGCCCAGGT 61.176 61.111 24.92 16.58 0.00 4.00
1969 3712 0.390209 GGGAACCGCGTTACAAGCTA 60.390 55.000 4.92 0.00 40.86 3.32
2046 3789 0.937699 TCGCTGTTCGACAAACTCCG 60.938 55.000 0.00 0.00 43.16 4.63
2055 3798 1.429148 GACAAACTCCGGCGCTATGG 61.429 60.000 7.64 7.51 0.00 2.74
2068 3811 0.459585 GCTATGGTCCGCAGTCGAAA 60.460 55.000 0.00 0.00 38.10 3.46
2078 3821 1.453524 CGCAGTCGAAAGAACTGACAG 59.546 52.381 7.42 0.00 45.01 3.51
2118 3861 2.202756 GAGGTTCCGGCGTGCTAG 60.203 66.667 6.01 0.00 0.00 3.42
2126 3869 1.509463 CGGCGTGCTAGTAGGTCAA 59.491 57.895 5.97 0.00 0.00 3.18
2185 3928 0.404812 TCCCCTATACGGAGAGCCTC 59.595 60.000 0.00 0.00 33.16 4.70
2186 3929 0.961358 CCCCTATACGGAGAGCCTCG 60.961 65.000 0.00 0.00 33.16 4.63
2195 3938 1.137825 GAGAGCCTCGTTCCACTCG 59.862 63.158 0.00 0.00 34.31 4.18
2215 3958 4.666975 CGTTGTTCGGAGCAGCTAATGC 62.667 54.545 0.00 0.00 44.93 3.56
2238 3981 5.183713 GCTGGCAGCATATTTGGATGTAATA 59.816 40.000 33.33 0.00 41.89 0.98
2243 3986 8.090214 GGCAGCATATTTGGATGTAATAATGTT 58.910 33.333 0.00 0.00 0.00 2.71
2369 4112 8.200024 AGCTATCTACACCATCTGTTTATCAT 57.800 34.615 0.00 0.00 33.91 2.45
2377 4120 6.769822 ACACCATCTGTTTATCATTGAGATCC 59.230 38.462 0.00 0.00 38.19 3.36
2395 4138 0.867746 CCGTGTGTCACTTCACCATG 59.132 55.000 4.27 0.00 37.51 3.66
2403 4146 3.643320 TGTCACTTCACCATGTCTTCTCT 59.357 43.478 0.00 0.00 0.00 3.10
2406 4149 3.007290 CACTTCACCATGTCTTCTCTCCA 59.993 47.826 0.00 0.00 0.00 3.86
2409 4152 2.300152 TCACCATGTCTTCTCTCCACAC 59.700 50.000 0.00 0.00 0.00 3.82
2434 4177 8.027771 ACTGAAATTTCTCAGAAATGCATTCTC 58.972 33.333 13.58 12.15 45.42 2.87
2491 4234 4.201891 GCAAGGTTCAATGCTGTCAGATAG 60.202 45.833 3.32 0.00 39.46 2.08
2500 4243 1.866063 GCTGTCAGATAGTAGCCGTGC 60.866 57.143 3.32 0.00 0.00 5.34
2514 4257 2.652530 GTGCCGGTACCTCAACGA 59.347 61.111 12.25 0.00 0.00 3.85
2515 4258 1.445582 GTGCCGGTACCTCAACGAG 60.446 63.158 12.25 0.00 0.00 4.18
2518 4261 2.183555 CGGTACCTCAACGAGCCC 59.816 66.667 10.90 0.00 0.00 5.19
2523 4266 1.180456 TACCTCAACGAGCCCGACAA 61.180 55.000 0.00 0.00 39.50 3.18
2527 4270 1.736645 CAACGAGCCCGACAACGAT 60.737 57.895 0.00 0.00 42.66 3.73
2528 4271 1.005394 AACGAGCCCGACAACGATT 60.005 52.632 0.00 0.00 42.66 3.34
2529 4272 0.244450 AACGAGCCCGACAACGATTA 59.756 50.000 0.00 0.00 42.66 1.75
2546 4289 8.568732 CAACGATTATTGTTGGTAGTTTTGTT 57.431 30.769 15.60 0.00 42.27 2.83
2547 4290 8.476142 CAACGATTATTGTTGGTAGTTTTGTTG 58.524 33.333 15.60 0.00 42.27 3.33
2558 4301 9.308318 GTTGGTAGTTTTGTTGAAATATGTGTT 57.692 29.630 0.00 0.00 0.00 3.32
2560 4303 8.470805 TGGTAGTTTTGTTGAAATATGTGTTGT 58.529 29.630 0.00 0.00 0.00 3.32
2585 4328 5.764487 ATTAGGTGTACGAGTTAGGCTAC 57.236 43.478 0.00 0.00 0.00 3.58
2586 4329 3.077484 AGGTGTACGAGTTAGGCTACA 57.923 47.619 0.00 0.00 0.00 2.74
2597 4340 5.533903 CGAGTTAGGCTACAATTACTCCCTA 59.466 44.000 14.56 0.00 30.79 3.53
2605 4348 9.388672 AGGCTACAATTACTCCCTATGTTTATA 57.611 33.333 0.00 0.00 0.00 0.98
2699 4443 9.552114 GATTCACTTACACGTATATATAAGCGT 57.448 33.333 5.68 8.53 38.14 5.07
2706 4450 6.387465 ACACGTATATATAAGCGTCTGCATT 58.613 36.000 10.66 0.00 46.23 3.56
2707 4451 6.527023 ACACGTATATATAAGCGTCTGCATTC 59.473 38.462 10.66 0.00 46.23 2.67
2708 4452 5.737757 ACGTATATATAAGCGTCTGCATTCG 59.262 40.000 5.68 6.35 46.23 3.34
2709 4453 5.737757 CGTATATATAAGCGTCTGCATTCGT 59.262 40.000 11.22 0.00 46.23 3.85
2710 4454 6.903479 CGTATATATAAGCGTCTGCATTCGTA 59.097 38.462 11.22 0.00 46.23 3.43
2748 4492 9.860898 AAAAGGATGTAGATTCACTTATTTTGC 57.139 29.630 0.00 0.00 0.00 3.68
2750 4494 8.443953 AGGATGTAGATTCACTTATTTTGCTC 57.556 34.615 0.00 0.00 0.00 4.26
2752 4496 8.125448 GGATGTAGATTCACTTATTTTGCTCAC 58.875 37.037 0.00 0.00 0.00 3.51
2754 4500 9.890629 ATGTAGATTCACTTATTTTGCTCACTA 57.109 29.630 0.00 0.00 0.00 2.74
2804 4550 9.237706 AGGTCTTATATTTAGAAATGGAGGGAA 57.762 33.333 0.00 0.00 0.00 3.97
2805 4551 9.862149 GGTCTTATATTTAGAAATGGAGGGAAA 57.138 33.333 0.00 0.00 0.00 3.13
2858 4604 3.065786 AGAGTCGAACACGTGTAACTTGA 59.934 43.478 23.69 13.09 38.55 3.02
2866 4612 4.638304 ACACGTGTAACTTGAGCCTATTT 58.362 39.130 21.98 0.00 38.55 1.40
2867 4613 4.689345 ACACGTGTAACTTGAGCCTATTTC 59.311 41.667 21.98 0.00 38.55 2.17
2868 4614 4.688879 CACGTGTAACTTGAGCCTATTTCA 59.311 41.667 7.58 0.00 38.55 2.69
2869 4615 5.351465 CACGTGTAACTTGAGCCTATTTCAT 59.649 40.000 7.58 0.00 38.55 2.57
2870 4616 6.533723 CACGTGTAACTTGAGCCTATTTCATA 59.466 38.462 7.58 0.00 38.55 2.15
2871 4617 7.064134 CACGTGTAACTTGAGCCTATTTCATAA 59.936 37.037 7.58 0.00 38.55 1.90
2872 4618 7.277981 ACGTGTAACTTGAGCCTATTTCATAAG 59.722 37.037 0.00 0.00 31.75 1.73
2873 4619 7.254455 CGTGTAACTTGAGCCTATTTCATAAGG 60.254 40.741 0.00 0.00 31.75 2.69
2874 4620 7.769044 GTGTAACTTGAGCCTATTTCATAAGGA 59.231 37.037 0.00 0.00 0.00 3.36
2875 4621 7.769044 TGTAACTTGAGCCTATTTCATAAGGAC 59.231 37.037 0.00 0.00 0.00 3.85
2876 4622 6.313519 ACTTGAGCCTATTTCATAAGGACA 57.686 37.500 0.00 0.00 0.00 4.02
2877 4623 6.116126 ACTTGAGCCTATTTCATAAGGACAC 58.884 40.000 0.00 0.00 0.00 3.67
2878 4624 5.957771 TGAGCCTATTTCATAAGGACACT 57.042 39.130 0.00 0.00 0.00 3.55
2879 4625 7.125811 ACTTGAGCCTATTTCATAAGGACACTA 59.874 37.037 0.00 0.00 0.00 2.74
2880 4626 7.618019 TGAGCCTATTTCATAAGGACACTAT 57.382 36.000 0.00 0.00 0.00 2.12
2881 4627 7.445121 TGAGCCTATTTCATAAGGACACTATG 58.555 38.462 0.00 0.00 0.00 2.23
2882 4628 7.071196 TGAGCCTATTTCATAAGGACACTATGT 59.929 37.037 0.00 0.00 0.00 2.29
2883 4629 7.220030 AGCCTATTTCATAAGGACACTATGTG 58.780 38.462 0.00 0.00 39.75 3.21
2884 4630 6.428159 GCCTATTTCATAAGGACACTATGTGG 59.572 42.308 2.72 0.00 37.94 4.17
2885 4631 7.509546 CCTATTTCATAAGGACACTATGTGGT 58.490 38.462 2.72 0.00 37.94 4.16
2886 4632 8.647796 CCTATTTCATAAGGACACTATGTGGTA 58.352 37.037 2.72 0.00 37.94 3.25
2887 4633 9.698309 CTATTTCATAAGGACACTATGTGGTAG 57.302 37.037 2.72 0.00 37.94 3.18
2888 4634 5.531122 TCATAAGGACACTATGTGGTAGC 57.469 43.478 2.72 0.00 37.94 3.58
2889 4635 4.344102 TCATAAGGACACTATGTGGTAGCC 59.656 45.833 2.72 0.00 37.94 3.93
2890 4636 2.247699 AGGACACTATGTGGTAGCCA 57.752 50.000 2.72 0.00 37.94 4.75
2891 4637 2.546899 AGGACACTATGTGGTAGCCAA 58.453 47.619 2.72 0.00 37.94 4.52
2892 4638 3.115390 AGGACACTATGTGGTAGCCAAT 58.885 45.455 2.72 0.00 37.94 3.16
2893 4639 3.118261 AGGACACTATGTGGTAGCCAATG 60.118 47.826 2.72 0.00 37.94 2.82
2894 4640 3.206150 GACACTATGTGGTAGCCAATGG 58.794 50.000 0.00 0.00 37.94 3.16
2895 4641 2.843730 ACACTATGTGGTAGCCAATGGA 59.156 45.455 2.05 0.00 37.94 3.41
2896 4642 3.206150 CACTATGTGGTAGCCAATGGAC 58.794 50.000 2.05 0.00 34.18 4.02
2897 4643 3.115390 ACTATGTGGTAGCCAATGGACT 58.885 45.455 2.05 2.11 34.18 3.85
2898 4644 4.100963 CACTATGTGGTAGCCAATGGACTA 59.899 45.833 2.05 1.01 34.18 2.59
2899 4645 3.845781 ATGTGGTAGCCAATGGACTAG 57.154 47.619 2.05 0.00 34.18 2.57
2900 4646 2.827755 TGTGGTAGCCAATGGACTAGA 58.172 47.619 2.05 0.00 34.18 2.43
2901 4647 2.500098 TGTGGTAGCCAATGGACTAGAC 59.500 50.000 2.05 4.98 34.18 2.59
2902 4648 2.500098 GTGGTAGCCAATGGACTAGACA 59.500 50.000 2.05 4.06 34.18 3.41
2903 4649 3.134804 GTGGTAGCCAATGGACTAGACAT 59.865 47.826 2.05 0.00 34.18 3.06
2904 4650 4.344102 GTGGTAGCCAATGGACTAGACATA 59.656 45.833 2.05 0.00 34.18 2.29
2905 4651 4.966168 TGGTAGCCAATGGACTAGACATAA 59.034 41.667 2.05 0.00 0.00 1.90
2906 4652 5.427157 TGGTAGCCAATGGACTAGACATAAA 59.573 40.000 2.05 0.00 0.00 1.40
2907 4653 5.758784 GGTAGCCAATGGACTAGACATAAAC 59.241 44.000 2.05 0.00 0.00 2.01
2908 4654 5.435686 AGCCAATGGACTAGACATAAACA 57.564 39.130 2.05 0.00 0.00 2.83
2909 4655 5.815581 AGCCAATGGACTAGACATAAACAA 58.184 37.500 2.05 0.00 0.00 2.83
2910 4656 6.426587 AGCCAATGGACTAGACATAAACAAT 58.573 36.000 2.05 0.00 0.00 2.71
2911 4657 7.573710 AGCCAATGGACTAGACATAAACAATA 58.426 34.615 2.05 0.00 0.00 1.90
2912 4658 7.716998 AGCCAATGGACTAGACATAAACAATAG 59.283 37.037 2.05 0.00 0.00 1.73
2913 4659 7.041098 GCCAATGGACTAGACATAAACAATAGG 60.041 40.741 2.05 0.00 0.00 2.57
2914 4660 7.445402 CCAATGGACTAGACATAAACAATAGGG 59.555 40.741 0.00 0.00 0.00 3.53
2915 4661 6.494666 TGGACTAGACATAAACAATAGGGG 57.505 41.667 0.00 0.00 0.00 4.79
2916 4662 5.968167 TGGACTAGACATAAACAATAGGGGT 59.032 40.000 0.00 0.00 0.00 4.95
2917 4663 6.445786 TGGACTAGACATAAACAATAGGGGTT 59.554 38.462 0.00 0.00 0.00 4.11
2918 4664 7.037153 TGGACTAGACATAAACAATAGGGGTTT 60.037 37.037 0.00 0.00 41.11 3.27
2919 4665 7.498239 GGACTAGACATAAACAATAGGGGTTTC 59.502 40.741 0.00 0.00 39.12 2.78
2920 4666 8.159229 ACTAGACATAAACAATAGGGGTTTCT 57.841 34.615 0.00 0.00 39.12 2.52
2921 4667 8.265764 ACTAGACATAAACAATAGGGGTTTCTC 58.734 37.037 0.00 0.00 39.12 2.87
2922 4668 7.027874 AGACATAAACAATAGGGGTTTCTCA 57.972 36.000 0.00 0.00 39.12 3.27
2923 4669 7.466804 AGACATAAACAATAGGGGTTTCTCAA 58.533 34.615 0.00 0.00 39.12 3.02
2924 4670 7.947890 AGACATAAACAATAGGGGTTTCTCAAA 59.052 33.333 0.00 0.00 39.12 2.69
2925 4671 8.485578 ACATAAACAATAGGGGTTTCTCAAAA 57.514 30.769 0.00 0.00 39.12 2.44
2926 4672 8.929487 ACATAAACAATAGGGGTTTCTCAAAAA 58.071 29.630 0.00 0.00 39.12 1.94
2953 4699 8.763984 AAAAGATAGGGTAGAAGAGATTACGA 57.236 34.615 0.00 0.00 0.00 3.43
2954 4700 7.989416 AAGATAGGGTAGAAGAGATTACGAG 57.011 40.000 0.00 0.00 0.00 4.18
2955 4701 7.319052 AGATAGGGTAGAAGAGATTACGAGA 57.681 40.000 0.00 0.00 0.00 4.04
2956 4702 7.391620 AGATAGGGTAGAAGAGATTACGAGAG 58.608 42.308 0.00 0.00 0.00 3.20
2957 4703 4.721132 AGGGTAGAAGAGATTACGAGAGG 58.279 47.826 0.00 0.00 0.00 3.69
2958 4704 4.166531 AGGGTAGAAGAGATTACGAGAGGT 59.833 45.833 0.00 0.00 0.00 3.85
2959 4705 5.369110 AGGGTAGAAGAGATTACGAGAGGTA 59.631 44.000 0.00 0.00 0.00 3.08
2960 4706 5.469760 GGGTAGAAGAGATTACGAGAGGTAC 59.530 48.000 0.00 0.00 0.00 3.34
2961 4707 6.054295 GGTAGAAGAGATTACGAGAGGTACA 58.946 44.000 0.00 0.00 0.00 2.90
2962 4708 6.203338 GGTAGAAGAGATTACGAGAGGTACAG 59.797 46.154 0.00 0.00 0.00 2.74
2963 4709 5.747342 AGAAGAGATTACGAGAGGTACAGT 58.253 41.667 0.00 0.00 0.00 3.55
2964 4710 6.181908 AGAAGAGATTACGAGAGGTACAGTT 58.818 40.000 0.00 0.00 0.00 3.16
2965 4711 6.660094 AGAAGAGATTACGAGAGGTACAGTTT 59.340 38.462 0.00 0.00 0.00 2.66
2966 4712 6.197364 AGAGATTACGAGAGGTACAGTTTG 57.803 41.667 0.00 0.00 0.00 2.93
2967 4713 5.125739 AGAGATTACGAGAGGTACAGTTTGG 59.874 44.000 0.00 0.00 0.00 3.28
2968 4714 3.308438 TTACGAGAGGTACAGTTTGGC 57.692 47.619 0.00 0.00 0.00 4.52
2969 4715 0.320697 ACGAGAGGTACAGTTTGGCC 59.679 55.000 0.00 0.00 0.00 5.36
2970 4716 0.320374 CGAGAGGTACAGTTTGGCCA 59.680 55.000 0.00 0.00 0.00 5.36
2971 4717 1.270625 CGAGAGGTACAGTTTGGCCAA 60.271 52.381 16.05 16.05 0.00 4.52
2972 4718 2.152016 GAGAGGTACAGTTTGGCCAAC 58.848 52.381 20.35 13.66 35.32 3.77
2973 4719 1.202891 AGAGGTACAGTTTGGCCAACC 60.203 52.381 20.35 16.28 35.77 3.77
2983 4729 1.929745 TGGCCAACCATATCAGGGG 59.070 57.895 0.61 0.00 42.67 4.79
2984 4730 0.923729 TGGCCAACCATATCAGGGGT 60.924 55.000 0.61 0.00 42.67 4.95
2985 4731 0.468029 GGCCAACCATATCAGGGGTG 60.468 60.000 0.00 0.00 42.95 4.61
2986 4732 1.109323 GCCAACCATATCAGGGGTGC 61.109 60.000 0.00 0.00 41.94 5.01
2987 4733 0.468029 CCAACCATATCAGGGGTGCC 60.468 60.000 0.00 0.00 41.94 5.01
2988 4734 0.468029 CAACCATATCAGGGGTGCCC 60.468 60.000 0.00 0.00 45.90 5.36
3009 4755 4.415150 CTGGCCATGGCGAGTGGT 62.415 66.667 33.78 0.00 41.12 4.16
3010 4756 3.925630 CTGGCCATGGCGAGTGGTT 62.926 63.158 33.78 0.00 41.12 3.67
3011 4757 3.443045 GGCCATGGCGAGTGGTTG 61.443 66.667 29.90 0.00 43.06 3.77
3012 4758 3.443045 GCCATGGCGAGTGGTTGG 61.443 66.667 23.48 0.00 39.01 3.77
3013 4759 2.350895 CCATGGCGAGTGGTTGGA 59.649 61.111 0.00 0.00 31.96 3.53
3014 4760 1.746615 CCATGGCGAGTGGTTGGAG 60.747 63.158 0.00 0.00 31.96 3.86
3015 4761 2.045926 ATGGCGAGTGGTTGGAGC 60.046 61.111 0.00 0.00 0.00 4.70
3016 4762 3.958147 ATGGCGAGTGGTTGGAGCG 62.958 63.158 0.00 0.00 0.00 5.03
3019 4765 3.114616 CGAGTGGTTGGAGCGCTG 61.115 66.667 18.48 0.00 36.47 5.18
3020 4766 2.031163 GAGTGGTTGGAGCGCTGT 59.969 61.111 18.48 0.00 36.47 4.40
3021 4767 2.029844 GAGTGGTTGGAGCGCTGTC 61.030 63.158 18.48 7.66 36.47 3.51
3022 4768 2.031163 GTGGTTGGAGCGCTGTCT 59.969 61.111 18.48 0.00 0.00 3.41
3023 4769 1.185618 AGTGGTTGGAGCGCTGTCTA 61.186 55.000 18.48 0.12 34.85 2.59
3024 4770 0.320421 GTGGTTGGAGCGCTGTCTAA 60.320 55.000 18.48 2.17 0.00 2.10
3025 4771 0.613260 TGGTTGGAGCGCTGTCTAAT 59.387 50.000 18.48 0.00 0.00 1.73
3026 4772 1.009829 GGTTGGAGCGCTGTCTAATG 58.990 55.000 18.48 0.00 0.00 1.90
3027 4773 1.009829 GTTGGAGCGCTGTCTAATGG 58.990 55.000 18.48 0.00 0.00 3.16
3028 4774 0.107703 TTGGAGCGCTGTCTAATGGG 60.108 55.000 18.48 0.00 0.00 4.00
3029 4775 1.889573 GGAGCGCTGTCTAATGGGC 60.890 63.158 18.48 0.00 41.52 5.36
3030 4776 3.313874 AGCGCTGTCTAATGGGCT 58.686 55.556 10.39 0.00 45.46 5.19
3031 4777 4.225497 GCGCTGTCTAATGGGCTT 57.775 55.556 0.00 0.00 38.77 4.35
3032 4778 1.723870 GCGCTGTCTAATGGGCTTG 59.276 57.895 0.00 0.00 38.77 4.01
3033 4779 1.718757 GCGCTGTCTAATGGGCTTGG 61.719 60.000 0.00 0.00 38.77 3.61
3034 4780 0.392998 CGCTGTCTAATGGGCTTGGT 60.393 55.000 0.00 0.00 0.00 3.67
3035 4781 1.098050 GCTGTCTAATGGGCTTGGTG 58.902 55.000 0.00 0.00 0.00 4.17
3036 4782 1.755179 CTGTCTAATGGGCTTGGTGG 58.245 55.000 0.00 0.00 0.00 4.61
3037 4783 1.004745 CTGTCTAATGGGCTTGGTGGT 59.995 52.381 0.00 0.00 0.00 4.16
3038 4784 1.427368 TGTCTAATGGGCTTGGTGGTT 59.573 47.619 0.00 0.00 0.00 3.67
3039 4785 2.158385 TGTCTAATGGGCTTGGTGGTTT 60.158 45.455 0.00 0.00 0.00 3.27
3040 4786 2.897326 GTCTAATGGGCTTGGTGGTTTT 59.103 45.455 0.00 0.00 0.00 2.43
3041 4787 3.323691 GTCTAATGGGCTTGGTGGTTTTT 59.676 43.478 0.00 0.00 0.00 1.94
3070 4816 8.628630 TCAACTGTATCATTTCATTTGGTACA 57.371 30.769 0.00 0.00 38.13 2.90
3071 4817 9.241919 TCAACTGTATCATTTCATTTGGTACAT 57.758 29.630 0.00 0.00 39.33 2.29
3072 4818 9.292846 CAACTGTATCATTTCATTTGGTACATG 57.707 33.333 0.00 0.00 39.33 3.21
3073 4819 7.999679 ACTGTATCATTTCATTTGGTACATGG 58.000 34.615 0.00 0.00 39.33 3.66
3074 4820 7.068593 ACTGTATCATTTCATTTGGTACATGGG 59.931 37.037 0.00 0.00 39.33 4.00
3075 4821 5.874897 ATCATTTCATTTGGTACATGGGG 57.125 39.130 0.00 0.00 39.30 4.96
3076 4822 4.940483 TCATTTCATTTGGTACATGGGGA 58.060 39.130 0.00 0.00 39.30 4.81
3077 4823 4.955450 TCATTTCATTTGGTACATGGGGAG 59.045 41.667 0.00 0.00 39.30 4.30
3078 4824 4.666412 TTTCATTTGGTACATGGGGAGA 57.334 40.909 0.00 0.00 39.30 3.71
3079 4825 4.666412 TTCATTTGGTACATGGGGAGAA 57.334 40.909 0.00 0.00 39.30 2.87
3080 4826 4.235079 TCATTTGGTACATGGGGAGAAG 57.765 45.455 0.00 0.00 39.30 2.85
3081 4827 2.507407 TTTGGTACATGGGGAGAAGC 57.493 50.000 0.00 0.00 39.30 3.86
3082 4828 0.251916 TTGGTACATGGGGAGAAGCG 59.748 55.000 0.00 0.00 39.30 4.68
3083 4829 0.907704 TGGTACATGGGGAGAAGCGT 60.908 55.000 0.00 0.00 0.00 5.07
3084 4830 0.179081 GGTACATGGGGAGAAGCGTC 60.179 60.000 0.00 0.00 0.00 5.19
3085 4831 0.824759 GTACATGGGGAGAAGCGTCT 59.175 55.000 0.31 0.31 36.55 4.18
3086 4832 0.824109 TACATGGGGAGAAGCGTCTG 59.176 55.000 6.97 0.00 32.80 3.51
3087 4833 1.194781 ACATGGGGAGAAGCGTCTGT 61.195 55.000 6.97 0.00 32.80 3.41
3088 4834 0.824109 CATGGGGAGAAGCGTCTGTA 59.176 55.000 6.97 0.00 32.80 2.74
3089 4835 1.115467 ATGGGGAGAAGCGTCTGTAG 58.885 55.000 6.97 0.00 32.80 2.74
3090 4836 0.251653 TGGGGAGAAGCGTCTGTAGT 60.252 55.000 6.97 0.00 32.80 2.73
3091 4837 0.456628 GGGGAGAAGCGTCTGTAGTC 59.543 60.000 6.97 0.00 32.80 2.59
3092 4838 1.174783 GGGAGAAGCGTCTGTAGTCA 58.825 55.000 6.97 0.00 32.80 3.41
3093 4839 1.751924 GGGAGAAGCGTCTGTAGTCAT 59.248 52.381 6.97 0.00 32.80 3.06
3094 4840 2.480416 GGGAGAAGCGTCTGTAGTCATG 60.480 54.545 6.97 0.00 32.80 3.07
3095 4841 2.189342 GAGAAGCGTCTGTAGTCATGC 58.811 52.381 6.97 0.00 32.80 4.06
3096 4842 1.134965 AGAAGCGTCTGTAGTCATGCC 60.135 52.381 0.00 0.00 30.83 4.40
3097 4843 0.898320 AAGCGTCTGTAGTCATGCCT 59.102 50.000 0.00 0.00 0.00 4.75
3098 4844 0.174389 AGCGTCTGTAGTCATGCCTG 59.826 55.000 0.00 0.00 0.00 4.85
3099 4845 0.173481 GCGTCTGTAGTCATGCCTGA 59.827 55.000 0.00 0.00 0.00 3.86
3100 4846 1.404181 GCGTCTGTAGTCATGCCTGAA 60.404 52.381 0.00 0.00 31.85 3.02
3101 4847 2.534298 CGTCTGTAGTCATGCCTGAAG 58.466 52.381 0.00 0.00 31.85 3.02
3102 4848 2.164422 CGTCTGTAGTCATGCCTGAAGA 59.836 50.000 0.00 0.00 31.85 2.87
3103 4849 3.181482 CGTCTGTAGTCATGCCTGAAGAT 60.181 47.826 0.00 0.00 31.85 2.40
3104 4850 4.118410 GTCTGTAGTCATGCCTGAAGATG 58.882 47.826 0.00 0.00 31.85 2.90
3105 4851 3.771479 TCTGTAGTCATGCCTGAAGATGT 59.229 43.478 0.00 0.00 31.85 3.06
3106 4852 4.956075 TCTGTAGTCATGCCTGAAGATGTA 59.044 41.667 0.00 0.00 31.85 2.29
3107 4853 5.068329 TCTGTAGTCATGCCTGAAGATGTAG 59.932 44.000 0.00 0.00 31.85 2.74
3108 4854 4.956075 TGTAGTCATGCCTGAAGATGTAGA 59.044 41.667 0.00 0.00 31.85 2.59
3109 4855 5.600069 TGTAGTCATGCCTGAAGATGTAGAT 59.400 40.000 0.00 0.00 31.85 1.98
3110 4856 6.777580 TGTAGTCATGCCTGAAGATGTAGATA 59.222 38.462 0.00 0.00 31.85 1.98
3111 4857 6.931790 AGTCATGCCTGAAGATGTAGATAT 57.068 37.500 0.00 0.00 31.85 1.63
3112 4858 6.699366 AGTCATGCCTGAAGATGTAGATATG 58.301 40.000 0.00 0.00 31.85 1.78
3113 4859 6.269538 AGTCATGCCTGAAGATGTAGATATGT 59.730 38.462 0.00 0.00 31.85 2.29
3114 4860 6.933521 GTCATGCCTGAAGATGTAGATATGTT 59.066 38.462 0.00 0.00 31.85 2.71
3115 4861 6.932960 TCATGCCTGAAGATGTAGATATGTTG 59.067 38.462 0.00 0.00 0.00 3.33
3116 4862 6.484364 TGCCTGAAGATGTAGATATGTTGA 57.516 37.500 0.00 0.00 0.00 3.18
3117 4863 7.071069 TGCCTGAAGATGTAGATATGTTGAT 57.929 36.000 0.00 0.00 0.00 2.57
3118 4864 7.512130 TGCCTGAAGATGTAGATATGTTGATT 58.488 34.615 0.00 0.00 0.00 2.57
3119 4865 7.994911 TGCCTGAAGATGTAGATATGTTGATTT 59.005 33.333 0.00 0.00 0.00 2.17
3120 4866 8.502387 GCCTGAAGATGTAGATATGTTGATTTC 58.498 37.037 0.00 0.00 0.00 2.17
3121 4867 9.775854 CCTGAAGATGTAGATATGTTGATTTCT 57.224 33.333 0.00 0.00 0.00 2.52
3125 4871 8.915057 AGATGTAGATATGTTGATTTCTTGGG 57.085 34.615 0.00 0.00 0.00 4.12
3126 4872 6.942532 TGTAGATATGTTGATTTCTTGGGC 57.057 37.500 0.00 0.00 0.00 5.36
3127 4873 6.662755 TGTAGATATGTTGATTTCTTGGGCT 58.337 36.000 0.00 0.00 0.00 5.19
3128 4874 7.118723 TGTAGATATGTTGATTTCTTGGGCTT 58.881 34.615 0.00 0.00 0.00 4.35
3129 4875 6.705863 AGATATGTTGATTTCTTGGGCTTC 57.294 37.500 0.00 0.00 0.00 3.86
3130 4876 6.430007 AGATATGTTGATTTCTTGGGCTTCT 58.570 36.000 0.00 0.00 0.00 2.85
3131 4877 7.577303 AGATATGTTGATTTCTTGGGCTTCTA 58.423 34.615 0.00 0.00 0.00 2.10
3132 4878 7.718753 AGATATGTTGATTTCTTGGGCTTCTAG 59.281 37.037 0.00 0.00 0.00 2.43
3133 4879 4.985538 TGTTGATTTCTTGGGCTTCTAGT 58.014 39.130 0.00 0.00 0.00 2.57
3134 4880 5.003804 TGTTGATTTCTTGGGCTTCTAGTC 58.996 41.667 0.00 0.00 0.00 2.59
3135 4881 4.908601 TGATTTCTTGGGCTTCTAGTCA 57.091 40.909 0.00 0.00 0.00 3.41
3136 4882 4.836825 TGATTTCTTGGGCTTCTAGTCAG 58.163 43.478 0.00 0.00 0.00 3.51
3137 4883 4.287067 TGATTTCTTGGGCTTCTAGTCAGT 59.713 41.667 0.00 0.00 0.00 3.41
3138 4884 4.706842 TTTCTTGGGCTTCTAGTCAGTT 57.293 40.909 0.00 0.00 0.00 3.16
3139 4885 4.706842 TTCTTGGGCTTCTAGTCAGTTT 57.293 40.909 0.00 0.00 0.00 2.66
3140 4886 4.706842 TCTTGGGCTTCTAGTCAGTTTT 57.293 40.909 0.00 0.00 0.00 2.43
3141 4887 5.048846 TCTTGGGCTTCTAGTCAGTTTTT 57.951 39.130 0.00 0.00 0.00 1.94
3142 4888 5.063880 TCTTGGGCTTCTAGTCAGTTTTTC 58.936 41.667 0.00 0.00 0.00 2.29
3143 4889 4.431416 TGGGCTTCTAGTCAGTTTTTCA 57.569 40.909 0.00 0.00 0.00 2.69
3144 4890 4.134563 TGGGCTTCTAGTCAGTTTTTCAC 58.865 43.478 0.00 0.00 0.00 3.18
3145 4891 3.502595 GGGCTTCTAGTCAGTTTTTCACC 59.497 47.826 0.00 0.00 0.00 4.02
3146 4892 3.502595 GGCTTCTAGTCAGTTTTTCACCC 59.497 47.826 0.00 0.00 0.00 4.61
3147 4893 4.134563 GCTTCTAGTCAGTTTTTCACCCA 58.865 43.478 0.00 0.00 0.00 4.51
3148 4894 4.214332 GCTTCTAGTCAGTTTTTCACCCAG 59.786 45.833 0.00 0.00 0.00 4.45
3149 4895 5.611374 CTTCTAGTCAGTTTTTCACCCAGA 58.389 41.667 0.00 0.00 0.00 3.86
3150 4896 5.623956 TCTAGTCAGTTTTTCACCCAGAA 57.376 39.130 0.00 0.00 0.00 3.02
3151 4897 5.996644 TCTAGTCAGTTTTTCACCCAGAAA 58.003 37.500 0.00 0.00 44.21 2.52
3162 4908 6.817765 TTTCACCCAGAAAACAGCTATTAG 57.182 37.500 0.00 0.00 43.00 1.73
3163 4909 5.499004 TCACCCAGAAAACAGCTATTAGT 57.501 39.130 0.00 0.00 0.00 2.24
3164 4910 5.876357 TCACCCAGAAAACAGCTATTAGTT 58.124 37.500 0.00 0.00 0.00 2.24
3165 4911 6.303839 TCACCCAGAAAACAGCTATTAGTTT 58.696 36.000 0.00 0.00 39.46 2.66
3167 4913 7.286775 TCACCCAGAAAACAGCTATTAGTTTTT 59.713 33.333 12.35 1.07 45.09 1.94
3168 4914 8.573035 CACCCAGAAAACAGCTATTAGTTTTTA 58.427 33.333 12.35 0.00 45.09 1.52
3169 4915 8.573885 ACCCAGAAAACAGCTATTAGTTTTTAC 58.426 33.333 12.35 3.48 45.09 2.01
3170 4916 8.573035 CCCAGAAAACAGCTATTAGTTTTTACA 58.427 33.333 12.35 0.00 45.09 2.41
3171 4917 9.612620 CCAGAAAACAGCTATTAGTTTTTACAG 57.387 33.333 12.35 5.26 45.09 2.74
3172 4918 9.612620 CAGAAAACAGCTATTAGTTTTTACAGG 57.387 33.333 12.35 1.06 45.09 4.00
3173 4919 9.569122 AGAAAACAGCTATTAGTTTTTACAGGA 57.431 29.630 12.35 0.00 45.09 3.86
3174 4920 9.827411 GAAAACAGCTATTAGTTTTTACAGGAG 57.173 33.333 12.35 0.00 45.09 3.69
3175 4921 6.986904 ACAGCTATTAGTTTTTACAGGAGC 57.013 37.500 0.00 0.00 0.00 4.70
3176 4922 6.712276 ACAGCTATTAGTTTTTACAGGAGCT 58.288 36.000 0.00 0.00 38.24 4.09
3177 4923 7.009568 CAGCTATTAGTTTTTACAGGAGCTG 57.990 40.000 5.74 5.74 45.77 4.24
3178 4924 6.037610 CAGCTATTAGTTTTTACAGGAGCTGG 59.962 42.308 11.30 0.00 46.70 4.85
3179 4925 6.070194 AGCTATTAGTTTTTACAGGAGCTGGA 60.070 38.462 0.00 0.00 36.44 3.86
3180 4926 6.768381 GCTATTAGTTTTTACAGGAGCTGGAT 59.232 38.462 0.00 0.00 35.51 3.41
3181 4927 7.931948 GCTATTAGTTTTTACAGGAGCTGGATA 59.068 37.037 0.00 0.00 35.51 2.59
3184 4930 9.700831 ATTAGTTTTTACAGGAGCTGGATATTT 57.299 29.630 0.00 0.00 35.51 1.40
3185 4931 9.528489 TTAGTTTTTACAGGAGCTGGATATTTT 57.472 29.630 0.00 0.00 35.51 1.82
3186 4932 8.422577 AGTTTTTACAGGAGCTGGATATTTTT 57.577 30.769 0.00 0.00 35.51 1.94
3187 4933 9.528489 AGTTTTTACAGGAGCTGGATATTTTTA 57.472 29.630 0.00 0.00 35.51 1.52
3192 4938 9.528489 TTACAGGAGCTGGATATTTTTAAAACT 57.472 29.630 0.00 0.00 35.51 2.66
3194 4940 9.700831 ACAGGAGCTGGATATTTTTAAAACTAT 57.299 29.630 9.79 9.79 35.51 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 3.546543 GGGTCCATGATCCGGCGA 61.547 66.667 9.30 0.00 0.00 5.54
288 289 3.542676 ACGAACAGCACCACCGGA 61.543 61.111 9.46 0.00 0.00 5.14
547 554 2.091541 AGCACCTCTCTTTCTCTCTCG 58.908 52.381 0.00 0.00 0.00 4.04
555 562 3.710209 ACAATAGCAGCACCTCTCTTT 57.290 42.857 0.00 0.00 0.00 2.52
556 563 3.710209 AACAATAGCAGCACCTCTCTT 57.290 42.857 0.00 0.00 0.00 2.85
677 1561 5.173664 CACATTCTGCATCTCACTGTAAGA 58.826 41.667 0.00 0.00 37.43 2.10
734 1618 7.696035 CGAAATTTCCGTTATGTTGATCAATCA 59.304 33.333 12.12 11.70 34.44 2.57
759 1643 1.006825 TCCAAGACGAACATGCGACG 61.007 55.000 0.00 0.00 34.83 5.12
798 1686 3.118775 CCGATTGACACCCAGACTGAATA 60.119 47.826 3.32 0.00 0.00 1.75
799 1687 2.355108 CCGATTGACACCCAGACTGAAT 60.355 50.000 3.32 0.00 0.00 2.57
804 1694 1.298859 GCACCGATTGACACCCAGAC 61.299 60.000 0.00 0.00 0.00 3.51
806 1707 0.249120 TAGCACCGATTGACACCCAG 59.751 55.000 0.00 0.00 0.00 4.45
823 1724 7.042335 AGACCGATTGTTTCCTGTTATCTTAG 58.958 38.462 0.00 0.00 0.00 2.18
857 1760 2.138596 TGTACAACCGAAACCGAGAC 57.861 50.000 0.00 0.00 0.00 3.36
885 1788 9.771534 ATTTTCGGACAAGATTTCCAAATAAAA 57.228 25.926 0.00 0.00 31.94 1.52
886 1789 9.771534 AATTTTCGGACAAGATTTCCAAATAAA 57.228 25.926 0.00 0.00 31.94 1.40
888 1791 9.849166 GTAATTTTCGGACAAGATTTCCAAATA 57.151 29.630 0.00 0.00 31.94 1.40
889 1792 8.585018 AGTAATTTTCGGACAAGATTTCCAAAT 58.415 29.630 0.00 0.00 31.94 2.32
890 1793 7.947282 AGTAATTTTCGGACAAGATTTCCAAA 58.053 30.769 0.00 0.00 31.94 3.28
891 1794 7.519032 AGTAATTTTCGGACAAGATTTCCAA 57.481 32.000 0.00 0.00 31.94 3.53
892 1795 8.801882 ATAGTAATTTTCGGACAAGATTTCCA 57.198 30.769 0.00 0.00 31.94 3.53
944 1847 4.587262 ACGATGCTATTGGTAGTGGATGTA 59.413 41.667 0.00 0.00 0.00 2.29
955 1858 2.533266 ACAGGCTACGATGCTATTGG 57.467 50.000 0.00 0.00 0.00 3.16
961 1864 2.989422 AAACAAACAGGCTACGATGC 57.011 45.000 0.00 0.00 0.00 3.91
970 1873 4.440758 CGTACATGCAGAAAAACAAACAGG 59.559 41.667 0.00 0.00 0.00 4.00
994 1897 0.250684 TTGCAAGTCTTCATGGCGGA 60.251 50.000 0.00 0.00 0.00 5.54
996 1899 1.159285 TCTTGCAAGTCTTCATGGCG 58.841 50.000 25.19 0.00 0.00 5.69
1010 1913 1.678425 CCTTCCTCCTCTGCTTCTTGC 60.678 57.143 0.00 0.00 43.25 4.01
1130 2033 0.034896 GGGGTCGGATATGATTGCGT 59.965 55.000 0.00 0.00 0.00 5.24
1151 2054 1.079503 GAGGTGCGACTGAATGAACC 58.920 55.000 0.00 0.00 0.00 3.62
1152 2055 1.079503 GGAGGTGCGACTGAATGAAC 58.920 55.000 0.00 0.00 0.00 3.18
1187 2913 2.065483 GATGGCCTCTCCTCCCATC 58.935 63.158 3.32 3.43 45.65 3.51
1195 2921 0.473326 ATGAGCAAGGATGGCCTCTC 59.527 55.000 3.32 0.00 46.28 3.20
1199 2925 1.105759 GGTGATGAGCAAGGATGGCC 61.106 60.000 0.00 0.00 33.19 5.36
1243 2969 1.351350 GGTAGGCCAGTTCTCACCTTT 59.649 52.381 5.01 0.00 33.60 3.11
1266 2992 2.399916 AGAAGATGCTGCTGGAGAAC 57.600 50.000 0.00 0.00 0.00 3.01
1338 3064 1.133407 GAGCTGAATTCTCCGTCGAGT 59.867 52.381 7.05 0.00 37.40 4.18
1395 3121 2.446994 TTGGTGTCGGTGGGGACT 60.447 61.111 0.00 0.00 37.81 3.85
1555 3289 1.008767 GCCCGTCTTACGATCTCGG 60.009 63.158 4.44 0.00 46.05 4.63
1567 3301 0.734889 CCATGTTGAAGATGCCCGTC 59.265 55.000 0.00 0.00 0.00 4.79
1663 3400 3.041940 GTGACCCACGCCTCAACG 61.042 66.667 0.00 0.00 39.50 4.10
1733 3470 1.078426 GGCTATGTGGACGTGGCTT 60.078 57.895 0.00 0.00 39.05 4.35
1738 3475 1.135083 CGAAGAAGGCTATGTGGACGT 60.135 52.381 0.00 0.00 0.00 4.34
1744 3481 2.359900 CCAAAGCGAAGAAGGCTATGT 58.640 47.619 0.00 0.00 40.53 2.29
1830 3567 2.743664 CGCATCACATTCAGGTTGAAGA 59.256 45.455 0.00 0.00 40.05 2.87
1870 3607 0.955428 GCTCGCCAACAGGATTGTCA 60.955 55.000 0.00 0.00 36.23 3.58
1872 3609 1.675641 GGCTCGCCAACAGGATTGT 60.676 57.895 2.41 0.00 39.87 2.71
1875 3612 2.270205 CAGGCTCGCCAACAGGAT 59.730 61.111 11.02 0.00 38.92 3.24
1878 3615 3.114616 CGTCAGGCTCGCCAACAG 61.115 66.667 11.02 0.00 38.92 3.16
1879 3616 3.611674 TCGTCAGGCTCGCCAACA 61.612 61.111 11.02 0.00 38.92 3.33
1904 3647 3.570125 TCCACGAGTATCCAGATCATCAC 59.430 47.826 0.00 0.00 0.00 3.06
1917 3660 0.599558 CCCGTTGTCTTCCACGAGTA 59.400 55.000 0.00 0.00 0.00 2.59
1918 3661 1.366366 CCCGTTGTCTTCCACGAGT 59.634 57.895 0.00 0.00 0.00 4.18
1946 3689 1.159098 TTGTAACGCGGTTCCCACAC 61.159 55.000 12.47 0.00 0.00 3.82
1954 3697 2.928116 GAGATTTAGCTTGTAACGCGGT 59.072 45.455 12.47 6.42 0.00 5.68
1990 3733 1.702957 TCCGGAAGAATTGACAAGGGT 59.297 47.619 0.00 0.00 0.00 4.34
2046 3789 4.530857 ACTGCGGACCATAGCGCC 62.531 66.667 2.29 0.00 35.87 6.53
2055 3798 0.784778 CAGTTCTTTCGACTGCGGAC 59.215 55.000 0.00 0.00 38.20 4.79
2062 3805 2.540101 CACCACTGTCAGTTCTTTCGAC 59.460 50.000 1.67 0.00 0.00 4.20
2068 3811 1.831106 TCACACACCACTGTCAGTTCT 59.169 47.619 1.67 0.00 0.00 3.01
2078 3821 0.940126 CTGTCAAGCTCACACACCAC 59.060 55.000 0.00 0.00 0.00 4.16
2118 3861 1.222113 GCAGGCCTCCTTGACCTAC 59.778 63.158 0.00 0.00 30.84 3.18
2185 3928 0.595567 TCCGAACAACGAGTGGAACG 60.596 55.000 0.00 0.00 45.77 3.95
2186 3929 1.137513 CTCCGAACAACGAGTGGAAC 58.862 55.000 0.00 0.00 45.77 3.62
2195 3938 2.813779 CATTAGCTGCTCCGAACAAC 57.186 50.000 4.91 0.00 0.00 3.32
2215 3958 5.717078 ATTACATCCAAATATGCTGCCAG 57.283 39.130 0.00 0.00 0.00 4.85
2238 3981 7.822334 TCACTCCGTCTCATAACATAAAACATT 59.178 33.333 0.00 0.00 0.00 2.71
2243 3986 6.525578 ACTCACTCCGTCTCATAACATAAA 57.474 37.500 0.00 0.00 0.00 1.40
2369 4112 2.364002 TGAAGTGACACACGGATCTCAA 59.636 45.455 8.59 0.00 39.64 3.02
2377 4120 1.526887 GACATGGTGAAGTGACACACG 59.473 52.381 8.59 0.00 41.88 4.49
2395 4138 5.994668 AGAAATTTCAGTGTGGAGAGAAGAC 59.005 40.000 19.99 0.00 0.00 3.01
2403 4146 6.515531 GCATTTCTGAGAAATTTCAGTGTGGA 60.516 38.462 17.22 6.59 43.96 4.02
2406 4149 6.395426 TGCATTTCTGAGAAATTTCAGTGT 57.605 33.333 17.22 0.00 43.96 3.55
2409 4152 8.244802 AGAGAATGCATTTCTGAGAAATTTCAG 58.755 33.333 22.69 10.55 44.88 3.02
2434 4177 6.788243 TGTGTTGCAAAGATTGATGCTATAG 58.212 36.000 0.00 0.00 42.97 1.31
2500 4243 2.183555 GGCTCGTTGAGGTACCGG 59.816 66.667 6.18 0.00 0.00 5.28
2503 4246 1.153881 GTCGGGCTCGTTGAGGTAC 60.154 63.158 5.57 0.00 37.69 3.34
2514 4257 2.396590 ACAATAATCGTTGTCGGGCT 57.603 45.000 0.00 0.00 37.80 5.19
2515 4258 2.477189 CCAACAATAATCGTTGTCGGGC 60.477 50.000 0.00 0.00 41.22 6.13
2518 4261 5.773239 ACTACCAACAATAATCGTTGTCG 57.227 39.130 0.00 0.00 41.22 4.35
2523 4266 7.932335 TCAACAAAACTACCAACAATAATCGT 58.068 30.769 0.00 0.00 0.00 3.73
2551 4294 9.123902 ACTCGTACACCTAATATACAACACATA 57.876 33.333 0.00 0.00 0.00 2.29
2558 4301 7.000472 AGCCTAACTCGTACACCTAATATACA 59.000 38.462 0.00 0.00 0.00 2.29
2560 4303 8.156820 TGTAGCCTAACTCGTACACCTAATATA 58.843 37.037 0.00 0.00 0.00 0.86
2572 4315 4.099113 GGGAGTAATTGTAGCCTAACTCGT 59.901 45.833 0.00 0.00 35.34 4.18
2574 4317 5.873146 AGGGAGTAATTGTAGCCTAACTC 57.127 43.478 0.00 0.00 34.08 3.01
2682 4426 5.366829 TGCAGACGCTTATATATACGTGT 57.633 39.130 13.53 13.53 39.16 4.49
2684 4428 5.737757 CGAATGCAGACGCTTATATATACGT 59.262 40.000 9.56 9.56 42.27 3.57
2699 4443 3.660501 AGAACACAGTACGAATGCAGA 57.339 42.857 0.00 0.00 0.00 4.26
2726 4470 8.125448 GTGAGCAAAATAAGTGAATCTACATCC 58.875 37.037 0.00 0.00 0.00 3.51
2728 4472 8.798859 AGTGAGCAAAATAAGTGAATCTACAT 57.201 30.769 0.00 0.00 0.00 2.29
2776 4522 9.868160 CCCTCCATTTCTAAATATAAGACCTTT 57.132 33.333 0.00 0.00 0.00 3.11
2858 4604 7.220030 CACATAGTGTCCTTATGAAATAGGCT 58.780 38.462 0.00 0.00 0.00 4.58
2866 4612 4.344102 GGCTACCACATAGTGTCCTTATGA 59.656 45.833 0.00 0.00 32.90 2.15
2867 4613 4.100963 TGGCTACCACATAGTGTCCTTATG 59.899 45.833 0.00 0.00 32.90 1.90
2868 4614 4.295201 TGGCTACCACATAGTGTCCTTAT 58.705 43.478 0.00 0.00 32.90 1.73
2869 4615 3.715287 TGGCTACCACATAGTGTCCTTA 58.285 45.455 0.00 0.00 32.90 2.69
2870 4616 2.546899 TGGCTACCACATAGTGTCCTT 58.453 47.619 0.00 0.00 32.90 3.36
2871 4617 2.247699 TGGCTACCACATAGTGTCCT 57.752 50.000 0.00 0.00 32.90 3.85
2872 4618 3.206150 CATTGGCTACCACATAGTGTCC 58.794 50.000 0.00 0.00 30.78 4.02
2873 4619 3.118408 TCCATTGGCTACCACATAGTGTC 60.118 47.826 0.00 0.00 30.78 3.67
2874 4620 2.843730 TCCATTGGCTACCACATAGTGT 59.156 45.455 0.00 0.00 30.78 3.55
2875 4621 3.118261 AGTCCATTGGCTACCACATAGTG 60.118 47.826 0.00 0.00 30.78 2.74
2876 4622 3.115390 AGTCCATTGGCTACCACATAGT 58.885 45.455 0.00 0.00 30.78 2.12
2877 4623 3.845781 AGTCCATTGGCTACCACATAG 57.154 47.619 0.00 0.00 30.78 2.23
2878 4624 4.344102 GTCTAGTCCATTGGCTACCACATA 59.656 45.833 0.00 0.00 30.78 2.29
2879 4625 3.134804 GTCTAGTCCATTGGCTACCACAT 59.865 47.826 0.00 0.00 30.78 3.21
2880 4626 2.500098 GTCTAGTCCATTGGCTACCACA 59.500 50.000 0.00 0.00 30.78 4.17
2881 4627 2.500098 TGTCTAGTCCATTGGCTACCAC 59.500 50.000 0.00 2.31 30.78 4.16
2882 4628 2.827755 TGTCTAGTCCATTGGCTACCA 58.172 47.619 0.00 0.00 0.00 3.25
2883 4629 5.546621 TTATGTCTAGTCCATTGGCTACC 57.453 43.478 0.00 0.00 0.00 3.18
2884 4630 6.346096 TGTTTATGTCTAGTCCATTGGCTAC 58.654 40.000 0.00 0.00 0.00 3.58
2885 4631 6.553953 TGTTTATGTCTAGTCCATTGGCTA 57.446 37.500 0.00 2.55 0.00 3.93
2886 4632 5.435686 TGTTTATGTCTAGTCCATTGGCT 57.564 39.130 0.00 1.40 0.00 4.75
2887 4633 6.699575 ATTGTTTATGTCTAGTCCATTGGC 57.300 37.500 0.00 0.00 0.00 4.52
2888 4634 7.445402 CCCTATTGTTTATGTCTAGTCCATTGG 59.555 40.741 0.00 0.00 0.00 3.16
2889 4635 7.445402 CCCCTATTGTTTATGTCTAGTCCATTG 59.555 40.741 3.58 0.00 0.00 2.82
2890 4636 7.128883 ACCCCTATTGTTTATGTCTAGTCCATT 59.871 37.037 3.58 0.00 0.00 3.16
2891 4637 6.619852 ACCCCTATTGTTTATGTCTAGTCCAT 59.380 38.462 0.00 0.00 0.00 3.41
2892 4638 5.968167 ACCCCTATTGTTTATGTCTAGTCCA 59.032 40.000 0.00 0.00 0.00 4.02
2893 4639 6.496144 ACCCCTATTGTTTATGTCTAGTCC 57.504 41.667 0.00 0.00 0.00 3.85
2894 4640 8.265764 AGAAACCCCTATTGTTTATGTCTAGTC 58.734 37.037 0.00 0.00 36.13 2.59
2895 4641 8.159229 AGAAACCCCTATTGTTTATGTCTAGT 57.841 34.615 0.00 0.00 36.13 2.57
2896 4642 8.265055 TGAGAAACCCCTATTGTTTATGTCTAG 58.735 37.037 0.00 0.00 36.13 2.43
2897 4643 8.153221 TGAGAAACCCCTATTGTTTATGTCTA 57.847 34.615 0.00 0.00 36.13 2.59
2898 4644 7.027874 TGAGAAACCCCTATTGTTTATGTCT 57.972 36.000 0.00 0.00 36.13 3.41
2899 4645 7.696992 TTGAGAAACCCCTATTGTTTATGTC 57.303 36.000 0.00 0.00 36.13 3.06
2900 4646 8.485578 TTTTGAGAAACCCCTATTGTTTATGT 57.514 30.769 0.00 0.00 36.13 2.29
2927 4673 9.198475 TCGTAATCTCTTCTACCCTATCTTTTT 57.802 33.333 0.00 0.00 0.00 1.94
2928 4674 8.763984 TCGTAATCTCTTCTACCCTATCTTTT 57.236 34.615 0.00 0.00 0.00 2.27
2929 4675 8.219178 TCTCGTAATCTCTTCTACCCTATCTTT 58.781 37.037 0.00 0.00 0.00 2.52
2930 4676 7.747690 TCTCGTAATCTCTTCTACCCTATCTT 58.252 38.462 0.00 0.00 0.00 2.40
2931 4677 7.319052 TCTCGTAATCTCTTCTACCCTATCT 57.681 40.000 0.00 0.00 0.00 1.98
2932 4678 6.596497 CCTCTCGTAATCTCTTCTACCCTATC 59.404 46.154 0.00 0.00 0.00 2.08
2933 4679 6.044637 ACCTCTCGTAATCTCTTCTACCCTAT 59.955 42.308 0.00 0.00 0.00 2.57
2934 4680 5.369110 ACCTCTCGTAATCTCTTCTACCCTA 59.631 44.000 0.00 0.00 0.00 3.53
2935 4681 4.166531 ACCTCTCGTAATCTCTTCTACCCT 59.833 45.833 0.00 0.00 0.00 4.34
2936 4682 4.463070 ACCTCTCGTAATCTCTTCTACCC 58.537 47.826 0.00 0.00 0.00 3.69
2937 4683 6.054295 TGTACCTCTCGTAATCTCTTCTACC 58.946 44.000 0.00 0.00 0.00 3.18
2938 4684 6.762661 ACTGTACCTCTCGTAATCTCTTCTAC 59.237 42.308 0.00 0.00 0.00 2.59
2939 4685 6.887013 ACTGTACCTCTCGTAATCTCTTCTA 58.113 40.000 0.00 0.00 0.00 2.10
2940 4686 5.747342 ACTGTACCTCTCGTAATCTCTTCT 58.253 41.667 0.00 0.00 0.00 2.85
2941 4687 6.439675 AACTGTACCTCTCGTAATCTCTTC 57.560 41.667 0.00 0.00 0.00 2.87
2942 4688 6.350277 CCAAACTGTACCTCTCGTAATCTCTT 60.350 42.308 0.00 0.00 0.00 2.85
2943 4689 5.125739 CCAAACTGTACCTCTCGTAATCTCT 59.874 44.000 0.00 0.00 0.00 3.10
2944 4690 5.341617 CCAAACTGTACCTCTCGTAATCTC 58.658 45.833 0.00 0.00 0.00 2.75
2945 4691 4.381718 GCCAAACTGTACCTCTCGTAATCT 60.382 45.833 0.00 0.00 0.00 2.40
2946 4692 3.864003 GCCAAACTGTACCTCTCGTAATC 59.136 47.826 0.00 0.00 0.00 1.75
2947 4693 3.369157 GGCCAAACTGTACCTCTCGTAAT 60.369 47.826 0.00 0.00 0.00 1.89
2948 4694 2.028748 GGCCAAACTGTACCTCTCGTAA 60.029 50.000 0.00 0.00 0.00 3.18
2949 4695 1.547372 GGCCAAACTGTACCTCTCGTA 59.453 52.381 0.00 0.00 0.00 3.43
2950 4696 0.320697 GGCCAAACTGTACCTCTCGT 59.679 55.000 0.00 0.00 0.00 4.18
2951 4697 0.320374 TGGCCAAACTGTACCTCTCG 59.680 55.000 0.61 0.00 0.00 4.04
2952 4698 2.152016 GTTGGCCAAACTGTACCTCTC 58.848 52.381 22.47 0.00 35.75 3.20
2953 4699 1.202891 GGTTGGCCAAACTGTACCTCT 60.203 52.381 26.78 0.00 38.92 3.69
2954 4700 1.244816 GGTTGGCCAAACTGTACCTC 58.755 55.000 26.78 7.34 38.92 3.85
2955 4701 0.553819 TGGTTGGCCAAACTGTACCT 59.446 50.000 32.69 0.00 42.83 3.08
2956 4702 3.119225 TGGTTGGCCAAACTGTACC 57.881 52.632 32.69 23.26 42.83 3.34
2966 4712 0.468029 CACCCCTGATATGGTTGGCC 60.468 60.000 0.00 0.00 30.70 5.36
2967 4713 1.109323 GCACCCCTGATATGGTTGGC 61.109 60.000 0.00 0.00 30.70 4.52
2968 4714 0.468029 GGCACCCCTGATATGGTTGG 60.468 60.000 0.00 0.00 30.70 3.77
2969 4715 3.116091 GGCACCCCTGATATGGTTG 57.884 57.895 0.00 0.00 30.70 3.77
2989 4735 4.101448 ACTCGCCATGGCCAGTCC 62.101 66.667 28.95 2.83 38.09 3.85
2990 4736 2.821366 CACTCGCCATGGCCAGTC 60.821 66.667 31.30 5.09 40.41 3.51
2991 4737 4.415150 CCACTCGCCATGGCCAGT 62.415 66.667 28.95 28.95 42.99 4.00
2992 4738 3.925630 AACCACTCGCCATGGCCAG 62.926 63.158 30.79 29.10 41.31 4.85
2993 4739 3.965258 AACCACTCGCCATGGCCA 61.965 61.111 30.79 18.42 41.31 5.36
2994 4740 3.443045 CAACCACTCGCCATGGCC 61.443 66.667 30.79 13.37 41.31 5.36
2995 4741 3.443045 CCAACCACTCGCCATGGC 61.443 66.667 27.67 27.67 41.31 4.40
2996 4742 1.746615 CTCCAACCACTCGCCATGG 60.747 63.158 7.63 7.63 43.43 3.66
2997 4743 2.401766 GCTCCAACCACTCGCCATG 61.402 63.158 0.00 0.00 0.00 3.66
2998 4744 2.045926 GCTCCAACCACTCGCCAT 60.046 61.111 0.00 0.00 0.00 4.40
2999 4745 4.680237 CGCTCCAACCACTCGCCA 62.680 66.667 0.00 0.00 0.00 5.69
3002 4748 3.114616 CAGCGCTCCAACCACTCG 61.115 66.667 7.13 0.00 0.00 4.18
3003 4749 2.029844 GACAGCGCTCCAACCACTC 61.030 63.158 7.13 0.00 0.00 3.51
3004 4750 1.185618 TAGACAGCGCTCCAACCACT 61.186 55.000 7.13 1.86 0.00 4.00
3005 4751 0.320421 TTAGACAGCGCTCCAACCAC 60.320 55.000 7.13 0.00 0.00 4.16
3006 4752 0.613260 ATTAGACAGCGCTCCAACCA 59.387 50.000 7.13 0.00 0.00 3.67
3007 4753 1.009829 CATTAGACAGCGCTCCAACC 58.990 55.000 7.13 0.00 0.00 3.77
3008 4754 1.009829 CCATTAGACAGCGCTCCAAC 58.990 55.000 7.13 0.00 0.00 3.77
3009 4755 0.107703 CCCATTAGACAGCGCTCCAA 60.108 55.000 7.13 0.00 0.00 3.53
3010 4756 1.522092 CCCATTAGACAGCGCTCCA 59.478 57.895 7.13 0.00 0.00 3.86
3011 4757 1.889573 GCCCATTAGACAGCGCTCC 60.890 63.158 7.13 1.73 0.00 4.70
3012 4758 0.462759 AAGCCCATTAGACAGCGCTC 60.463 55.000 7.13 0.00 0.00 5.03
3013 4759 0.745845 CAAGCCCATTAGACAGCGCT 60.746 55.000 2.64 2.64 0.00 5.92
3014 4760 1.718757 CCAAGCCCATTAGACAGCGC 61.719 60.000 0.00 0.00 0.00 5.92
3015 4761 0.392998 ACCAAGCCCATTAGACAGCG 60.393 55.000 0.00 0.00 0.00 5.18
3016 4762 1.098050 CACCAAGCCCATTAGACAGC 58.902 55.000 0.00 0.00 0.00 4.40
3017 4763 1.004745 ACCACCAAGCCCATTAGACAG 59.995 52.381 0.00 0.00 0.00 3.51
3018 4764 1.072266 ACCACCAAGCCCATTAGACA 58.928 50.000 0.00 0.00 0.00 3.41
3019 4765 2.215942 AACCACCAAGCCCATTAGAC 57.784 50.000 0.00 0.00 0.00 2.59
3020 4766 2.990740 AAACCACCAAGCCCATTAGA 57.009 45.000 0.00 0.00 0.00 2.10
3044 4790 9.241919 TGTACCAAATGAAATGATACAGTTGAT 57.758 29.630 11.92 1.25 42.17 2.57
3045 4791 8.628630 TGTACCAAATGAAATGATACAGTTGA 57.371 30.769 11.92 0.00 42.17 3.18
3046 4792 9.292846 CATGTACCAAATGAAATGATACAGTTG 57.707 33.333 0.00 0.00 40.27 3.16
3047 4793 8.469200 CCATGTACCAAATGAAATGATACAGTT 58.531 33.333 0.00 0.00 0.00 3.16
3048 4794 7.068593 CCCATGTACCAAATGAAATGATACAGT 59.931 37.037 0.00 0.00 0.00 3.55
3049 4795 7.428020 CCCATGTACCAAATGAAATGATACAG 58.572 38.462 0.00 0.00 0.00 2.74
3050 4796 6.323482 CCCCATGTACCAAATGAAATGATACA 59.677 38.462 0.00 0.00 0.00 2.29
3051 4797 6.549364 TCCCCATGTACCAAATGAAATGATAC 59.451 38.462 0.00 0.00 0.00 2.24
3052 4798 6.677552 TCCCCATGTACCAAATGAAATGATA 58.322 36.000 0.00 0.00 0.00 2.15
3053 4799 5.527385 TCCCCATGTACCAAATGAAATGAT 58.473 37.500 0.00 0.00 0.00 2.45
3054 4800 4.940483 TCCCCATGTACCAAATGAAATGA 58.060 39.130 0.00 0.00 0.00 2.57
3055 4801 4.955450 TCTCCCCATGTACCAAATGAAATG 59.045 41.667 0.00 0.00 0.00 2.32
3056 4802 5.205517 TCTCCCCATGTACCAAATGAAAT 57.794 39.130 0.00 0.00 0.00 2.17
3057 4803 4.666412 TCTCCCCATGTACCAAATGAAA 57.334 40.909 0.00 0.00 0.00 2.69
3058 4804 4.599041 CTTCTCCCCATGTACCAAATGAA 58.401 43.478 0.00 0.00 0.00 2.57
3059 4805 3.624707 GCTTCTCCCCATGTACCAAATGA 60.625 47.826 0.00 0.00 0.00 2.57
3060 4806 2.689983 GCTTCTCCCCATGTACCAAATG 59.310 50.000 0.00 0.00 0.00 2.32
3061 4807 2.683742 CGCTTCTCCCCATGTACCAAAT 60.684 50.000 0.00 0.00 0.00 2.32
3062 4808 1.339631 CGCTTCTCCCCATGTACCAAA 60.340 52.381 0.00 0.00 0.00 3.28
3063 4809 0.251916 CGCTTCTCCCCATGTACCAA 59.748 55.000 0.00 0.00 0.00 3.67
3064 4810 0.907704 ACGCTTCTCCCCATGTACCA 60.908 55.000 0.00 0.00 0.00 3.25
3065 4811 0.179081 GACGCTTCTCCCCATGTACC 60.179 60.000 0.00 0.00 0.00 3.34
3066 4812 0.824759 AGACGCTTCTCCCCATGTAC 59.175 55.000 0.00 0.00 0.00 2.90
3067 4813 0.824109 CAGACGCTTCTCCCCATGTA 59.176 55.000 0.00 0.00 0.00 2.29
3068 4814 1.194781 ACAGACGCTTCTCCCCATGT 61.195 55.000 0.00 0.00 0.00 3.21
3069 4815 0.824109 TACAGACGCTTCTCCCCATG 59.176 55.000 0.00 0.00 0.00 3.66
3070 4816 1.115467 CTACAGACGCTTCTCCCCAT 58.885 55.000 0.00 0.00 0.00 4.00
3071 4817 0.251653 ACTACAGACGCTTCTCCCCA 60.252 55.000 0.00 0.00 0.00 4.96
3072 4818 0.456628 GACTACAGACGCTTCTCCCC 59.543 60.000 0.00 0.00 0.00 4.81
3073 4819 1.174783 TGACTACAGACGCTTCTCCC 58.825 55.000 0.00 0.00 0.00 4.30
3074 4820 2.803451 CATGACTACAGACGCTTCTCC 58.197 52.381 0.00 0.00 0.00 3.71
3075 4821 2.189342 GCATGACTACAGACGCTTCTC 58.811 52.381 0.00 0.00 0.00 2.87
3076 4822 1.134965 GGCATGACTACAGACGCTTCT 60.135 52.381 0.00 0.00 0.00 2.85
3077 4823 1.134965 AGGCATGACTACAGACGCTTC 60.135 52.381 0.00 0.00 0.00 3.86
3078 4824 0.898320 AGGCATGACTACAGACGCTT 59.102 50.000 0.00 0.00 0.00 4.68
3079 4825 0.174389 CAGGCATGACTACAGACGCT 59.826 55.000 0.00 0.00 0.00 5.07
3080 4826 0.173481 TCAGGCATGACTACAGACGC 59.827 55.000 0.00 0.00 0.00 5.19
3081 4827 2.164422 TCTTCAGGCATGACTACAGACG 59.836 50.000 0.00 0.00 34.35 4.18
3082 4828 3.876274 TCTTCAGGCATGACTACAGAC 57.124 47.619 0.00 0.00 34.35 3.51
3083 4829 3.771479 ACATCTTCAGGCATGACTACAGA 59.229 43.478 0.00 5.98 34.35 3.41
3084 4830 4.134379 ACATCTTCAGGCATGACTACAG 57.866 45.455 0.00 0.00 34.35 2.74
3085 4831 4.956075 TCTACATCTTCAGGCATGACTACA 59.044 41.667 0.00 0.00 34.35 2.74
3086 4832 5.521906 TCTACATCTTCAGGCATGACTAC 57.478 43.478 0.00 0.00 34.35 2.73
3087 4833 7.452813 ACATATCTACATCTTCAGGCATGACTA 59.547 37.037 0.00 0.00 34.35 2.59
3088 4834 6.269538 ACATATCTACATCTTCAGGCATGACT 59.730 38.462 0.00 0.00 34.35 3.41
3089 4835 6.462500 ACATATCTACATCTTCAGGCATGAC 58.538 40.000 0.00 0.00 34.35 3.06
3090 4836 6.676990 ACATATCTACATCTTCAGGCATGA 57.323 37.500 0.00 0.00 0.00 3.07
3091 4837 6.932960 TCAACATATCTACATCTTCAGGCATG 59.067 38.462 0.00 0.00 0.00 4.06
3092 4838 7.071069 TCAACATATCTACATCTTCAGGCAT 57.929 36.000 0.00 0.00 0.00 4.40
3093 4839 6.484364 TCAACATATCTACATCTTCAGGCA 57.516 37.500 0.00 0.00 0.00 4.75
3094 4840 7.976135 AATCAACATATCTACATCTTCAGGC 57.024 36.000 0.00 0.00 0.00 4.85
3095 4841 9.775854 AGAAATCAACATATCTACATCTTCAGG 57.224 33.333 0.00 0.00 0.00 3.86
3099 4845 9.347240 CCCAAGAAATCAACATATCTACATCTT 57.653 33.333 0.00 0.00 0.00 2.40
3100 4846 7.446625 GCCCAAGAAATCAACATATCTACATCT 59.553 37.037 0.00 0.00 0.00 2.90
3101 4847 7.446625 AGCCCAAGAAATCAACATATCTACATC 59.553 37.037 0.00 0.00 0.00 3.06
3102 4848 7.293073 AGCCCAAGAAATCAACATATCTACAT 58.707 34.615 0.00 0.00 0.00 2.29
3103 4849 6.662755 AGCCCAAGAAATCAACATATCTACA 58.337 36.000 0.00 0.00 0.00 2.74
3104 4850 7.500559 AGAAGCCCAAGAAATCAACATATCTAC 59.499 37.037 0.00 0.00 0.00 2.59
3105 4851 7.577303 AGAAGCCCAAGAAATCAACATATCTA 58.423 34.615 0.00 0.00 0.00 1.98
3106 4852 6.430007 AGAAGCCCAAGAAATCAACATATCT 58.570 36.000 0.00 0.00 0.00 1.98
3107 4853 6.705863 AGAAGCCCAAGAAATCAACATATC 57.294 37.500 0.00 0.00 0.00 1.63
3108 4854 7.349598 ACTAGAAGCCCAAGAAATCAACATAT 58.650 34.615 0.00 0.00 0.00 1.78
3109 4855 6.721318 ACTAGAAGCCCAAGAAATCAACATA 58.279 36.000 0.00 0.00 0.00 2.29
3110 4856 5.574188 ACTAGAAGCCCAAGAAATCAACAT 58.426 37.500 0.00 0.00 0.00 2.71
3111 4857 4.985538 ACTAGAAGCCCAAGAAATCAACA 58.014 39.130 0.00 0.00 0.00 3.33
3112 4858 5.003804 TGACTAGAAGCCCAAGAAATCAAC 58.996 41.667 0.00 0.00 0.00 3.18
3113 4859 5.221925 ACTGACTAGAAGCCCAAGAAATCAA 60.222 40.000 0.00 0.00 0.00 2.57
3114 4860 4.287067 ACTGACTAGAAGCCCAAGAAATCA 59.713 41.667 0.00 0.00 0.00 2.57
3115 4861 4.837972 ACTGACTAGAAGCCCAAGAAATC 58.162 43.478 0.00 0.00 0.00 2.17
3116 4862 4.917906 ACTGACTAGAAGCCCAAGAAAT 57.082 40.909 0.00 0.00 0.00 2.17
3117 4863 4.706842 AACTGACTAGAAGCCCAAGAAA 57.293 40.909 0.00 0.00 0.00 2.52
3118 4864 4.706842 AAACTGACTAGAAGCCCAAGAA 57.293 40.909 0.00 0.00 0.00 2.52
3119 4865 4.706842 AAAACTGACTAGAAGCCCAAGA 57.293 40.909 0.00 0.00 0.00 3.02
3120 4866 4.821805 TGAAAAACTGACTAGAAGCCCAAG 59.178 41.667 0.00 0.00 0.00 3.61
3121 4867 4.578928 GTGAAAAACTGACTAGAAGCCCAA 59.421 41.667 0.00 0.00 0.00 4.12
3122 4868 4.134563 GTGAAAAACTGACTAGAAGCCCA 58.865 43.478 0.00 0.00 0.00 5.36
3123 4869 3.502595 GGTGAAAAACTGACTAGAAGCCC 59.497 47.826 0.00 0.00 0.00 5.19
3124 4870 3.502595 GGGTGAAAAACTGACTAGAAGCC 59.497 47.826 0.00 0.00 0.00 4.35
3125 4871 4.134563 TGGGTGAAAAACTGACTAGAAGC 58.865 43.478 0.00 0.00 0.00 3.86
3126 4872 5.611374 TCTGGGTGAAAAACTGACTAGAAG 58.389 41.667 0.00 0.00 0.00 2.85
3127 4873 5.623956 TCTGGGTGAAAAACTGACTAGAA 57.376 39.130 0.00 0.00 0.00 2.10
3128 4874 5.623956 TTCTGGGTGAAAAACTGACTAGA 57.376 39.130 0.00 0.00 0.00 2.43
3139 4885 6.303839 ACTAATAGCTGTTTTCTGGGTGAAA 58.696 36.000 0.00 0.00 42.33 2.69
3140 4886 5.876357 ACTAATAGCTGTTTTCTGGGTGAA 58.124 37.500 0.00 0.00 0.00 3.18
3141 4887 5.499004 ACTAATAGCTGTTTTCTGGGTGA 57.501 39.130 0.00 0.00 0.00 4.02
3142 4888 6.575162 AAACTAATAGCTGTTTTCTGGGTG 57.425 37.500 0.00 0.00 33.21 4.61
3143 4889 7.597288 AAAAACTAATAGCTGTTTTCTGGGT 57.403 32.000 11.68 0.00 43.04 4.51
3144 4890 8.573035 TGTAAAAACTAATAGCTGTTTTCTGGG 58.427 33.333 11.68 0.00 43.04 4.45
3145 4891 9.612620 CTGTAAAAACTAATAGCTGTTTTCTGG 57.387 33.333 11.68 2.43 43.04 3.86
3146 4892 9.612620 CCTGTAAAAACTAATAGCTGTTTTCTG 57.387 33.333 11.68 6.14 43.04 3.02
3147 4893 9.569122 TCCTGTAAAAACTAATAGCTGTTTTCT 57.431 29.630 11.68 6.58 43.04 2.52
3148 4894 9.827411 CTCCTGTAAAAACTAATAGCTGTTTTC 57.173 33.333 11.68 3.55 43.04 2.29
3149 4895 8.297426 GCTCCTGTAAAAACTAATAGCTGTTTT 58.703 33.333 0.00 3.91 44.91 2.43
3150 4896 7.665974 AGCTCCTGTAAAAACTAATAGCTGTTT 59.334 33.333 0.00 0.00 36.49 2.83
3151 4897 7.119846 CAGCTCCTGTAAAAACTAATAGCTGTT 59.880 37.037 11.33 0.04 45.77 3.16
3152 4898 6.595716 CAGCTCCTGTAAAAACTAATAGCTGT 59.404 38.462 11.33 0.00 45.77 4.40
3153 4899 7.009568 CAGCTCCTGTAAAAACTAATAGCTG 57.990 40.000 0.00 0.00 45.68 4.24
3154 4900 6.070194 TCCAGCTCCTGTAAAAACTAATAGCT 60.070 38.462 0.00 0.00 38.26 3.32
3155 4901 6.113411 TCCAGCTCCTGTAAAAACTAATAGC 58.887 40.000 0.00 0.00 0.00 2.97
3158 4904 9.700831 AAATATCCAGCTCCTGTAAAAACTAAT 57.299 29.630 0.00 0.00 0.00 1.73
3159 4905 9.528489 AAAATATCCAGCTCCTGTAAAAACTAA 57.472 29.630 0.00 0.00 0.00 2.24
3160 4906 9.528489 AAAAATATCCAGCTCCTGTAAAAACTA 57.472 29.630 0.00 0.00 0.00 2.24
3161 4907 8.422577 AAAAATATCCAGCTCCTGTAAAAACT 57.577 30.769 0.00 0.00 0.00 2.66
3166 4912 9.528489 AGTTTTAAAAATATCCAGCTCCTGTAA 57.472 29.630 1.31 0.00 0.00 2.41
3168 4914 9.700831 ATAGTTTTAAAAATATCCAGCTCCTGT 57.299 29.630 13.66 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.