Multiple sequence alignment - TraesCS2B01G196600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G196600 chr2B 100.000 3548 0 0 1 3548 174665205 174661658 0.000000e+00 6553.0
1 TraesCS2B01G196600 chr2B 86.369 807 66 26 2773 3548 43279689 43280482 0.000000e+00 841.0
2 TraesCS2B01G196600 chr2B 93.074 231 16 0 1256 1486 174593448 174593218 4.390000e-89 339.0
3 TraesCS2B01G196600 chr2D 90.446 1120 66 24 1692 2772 121355276 121354159 0.000000e+00 1437.0
4 TraesCS2B01G196600 chr2D 84.721 949 68 38 659 1571 121356479 121355572 0.000000e+00 878.0
5 TraesCS2B01G196600 chr2D 85.378 807 71 27 2772 3548 29502406 29503195 0.000000e+00 793.0
6 TraesCS2B01G196600 chr2D 78.165 861 152 27 1691 2531 121060875 121060031 1.890000e-142 516.0
7 TraesCS2B01G196600 chr2D 84.049 489 48 20 999 1482 121061622 121061159 9.040000e-121 444.0
8 TraesCS2B01G196600 chr2D 85.019 267 39 1 1 266 560324822 560325088 1.620000e-68 270.0
9 TraesCS2B01G196600 chr2D 85.019 267 35 4 1 264 584537298 584537562 2.100000e-67 267.0
10 TraesCS2B01G196600 chr2D 90.741 108 10 0 549 656 121356803 121356696 1.030000e-30 145.0
11 TraesCS2B01G196600 chr2D 83.117 154 22 2 358 507 121356960 121356807 1.720000e-28 137.0
12 TraesCS2B01G196600 chr2A 89.479 998 65 22 1691 2648 125458874 125457877 0.000000e+00 1225.0
13 TraesCS2B01G196600 chr2A 91.121 687 38 10 2870 3546 90069776 90070449 0.000000e+00 909.0
14 TraesCS2B01G196600 chr2A 94.521 365 18 2 665 1028 125460353 125459990 2.390000e-156 562.0
15 TraesCS2B01G196600 chr2A 78.436 844 145 29 1692 2531 125252320 125251510 1.890000e-142 516.0
16 TraesCS2B01G196600 chr2A 89.873 316 18 7 1256 1571 125459448 125459147 9.230000e-106 394.0
17 TraesCS2B01G196600 chr2A 89.362 282 23 5 1207 1487 125252883 125252608 7.290000e-92 348.0
18 TraesCS2B01G196600 chr2A 89.113 248 14 5 2498 2733 125456522 125456276 2.680000e-76 296.0
19 TraesCS2B01G196600 chr2A 92.258 155 10 2 461 614 125460618 125460465 5.960000e-53 219.0
20 TraesCS2B01G196600 chr2A 97.115 104 2 1 2772 2875 90069323 90069425 1.310000e-39 174.0
21 TraesCS2B01G196600 chr2A 94.595 111 4 2 2780 2888 4635732 4635842 1.690000e-38 171.0
22 TraesCS2B01G196600 chr2A 86.709 158 12 6 999 1147 125253072 125252915 2.190000e-37 167.0
23 TraesCS2B01G196600 chr2A 95.833 96 4 0 2674 2769 125457880 125457785 4.740000e-34 156.0
24 TraesCS2B01G196600 chr7B 95.106 756 21 5 2794 3548 73669672 73670412 0.000000e+00 1177.0
25 TraesCS2B01G196600 chr3B 95.080 752 24 5 2799 3548 478553687 478554427 0.000000e+00 1171.0
26 TraesCS2B01G196600 chr3B 85.551 263 32 6 1 260 822840262 822840003 1.620000e-68 270.0
27 TraesCS2B01G196600 chr3D 93.333 690 25 10 2772 3453 45648665 45649341 0.000000e+00 1000.0
28 TraesCS2B01G196600 chr3D 85.000 260 36 3 9 266 120634051 120633793 9.770000e-66 261.0
29 TraesCS2B01G196600 chr3D 98.039 51 1 0 3498 3548 45649345 45649395 4.880000e-14 89.8
30 TraesCS2B01G196600 chr1A 86.364 726 57 22 2844 3544 500869473 500870181 0.000000e+00 754.0
31 TraesCS2B01G196600 chr1A 83.599 817 72 30 2772 3546 121573631 121572835 0.000000e+00 710.0
32 TraesCS2B01G196600 chr1A 84.211 437 53 10 2842 3266 13815468 13815036 9.170000e-111 411.0
33 TraesCS2B01G196600 chr4A 85.948 733 58 35 2842 3548 703680079 703679366 0.000000e+00 741.0
34 TraesCS2B01G196600 chr4A 86.142 267 36 1 1 266 165413190 165412924 1.610000e-73 287.0
35 TraesCS2B01G196600 chr4B 83.679 772 67 32 2768 3493 671719532 671720290 0.000000e+00 673.0
36 TraesCS2B01G196600 chr1D 87.648 591 42 15 2772 3337 405386108 405386692 0.000000e+00 658.0
37 TraesCS2B01G196600 chr6B 86.207 638 47 27 2842 3458 710078216 710078833 0.000000e+00 652.0
38 TraesCS2B01G196600 chr6B 78.661 478 60 30 3080 3548 699975248 699975692 2.700000e-71 279.0
39 TraesCS2B01G196600 chr6B 85.019 267 38 2 2 266 468730187 468730453 1.620000e-68 270.0
40 TraesCS2B01G196600 chr5B 89.076 476 30 14 3080 3548 646374917 646375377 3.970000e-159 571.0
41 TraesCS2B01G196600 chr5A 82.749 342 38 10 2768 3089 709418638 709418298 5.800000e-73 285.0
42 TraesCS2B01G196600 chr3A 85.338 266 37 2 2 266 419477115 419476851 1.250000e-69 274.0
43 TraesCS2B01G196600 chrUn 85.338 266 36 1 1 266 52976401 52976663 4.510000e-69 272.0
44 TraesCS2B01G196600 chr6D 84.701 268 37 4 1 266 388556961 388556696 7.550000e-67 265.0
45 TraesCS2B01G196600 chr7A 80.000 335 48 15 3113 3435 643467974 643467647 2.750000e-56 230.0
46 TraesCS2B01G196600 chr1B 86.829 205 16 5 3346 3548 545428823 545429018 5.960000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G196600 chr2B 174661658 174665205 3547 True 6553.000000 6553 100.000000 1 3548 1 chr2B.!!$R2 3547
1 TraesCS2B01G196600 chr2B 43279689 43280482 793 False 841.000000 841 86.369000 2773 3548 1 chr2B.!!$F1 775
2 TraesCS2B01G196600 chr2D 29502406 29503195 789 False 793.000000 793 85.378000 2772 3548 1 chr2D.!!$F1 776
3 TraesCS2B01G196600 chr2D 121354159 121356960 2801 True 649.250000 1437 87.256250 358 2772 4 chr2D.!!$R2 2414
4 TraesCS2B01G196600 chr2D 121060031 121061622 1591 True 480.000000 516 81.107000 999 2531 2 chr2D.!!$R1 1532
5 TraesCS2B01G196600 chr2A 90069323 90070449 1126 False 541.500000 909 94.118000 2772 3546 2 chr2A.!!$F2 774
6 TraesCS2B01G196600 chr2A 125456276 125460618 4342 True 475.333333 1225 91.846167 461 2769 6 chr2A.!!$R2 2308
7 TraesCS2B01G196600 chr2A 125251510 125253072 1562 True 343.666667 516 84.835667 999 2531 3 chr2A.!!$R1 1532
8 TraesCS2B01G196600 chr7B 73669672 73670412 740 False 1177.000000 1177 95.106000 2794 3548 1 chr7B.!!$F1 754
9 TraesCS2B01G196600 chr3B 478553687 478554427 740 False 1171.000000 1171 95.080000 2799 3548 1 chr3B.!!$F1 749
10 TraesCS2B01G196600 chr3D 45648665 45649395 730 False 544.900000 1000 95.686000 2772 3548 2 chr3D.!!$F1 776
11 TraesCS2B01G196600 chr1A 500869473 500870181 708 False 754.000000 754 86.364000 2844 3544 1 chr1A.!!$F1 700
12 TraesCS2B01G196600 chr1A 121572835 121573631 796 True 710.000000 710 83.599000 2772 3546 1 chr1A.!!$R2 774
13 TraesCS2B01G196600 chr4A 703679366 703680079 713 True 741.000000 741 85.948000 2842 3548 1 chr4A.!!$R2 706
14 TraesCS2B01G196600 chr4B 671719532 671720290 758 False 673.000000 673 83.679000 2768 3493 1 chr4B.!!$F1 725
15 TraesCS2B01G196600 chr1D 405386108 405386692 584 False 658.000000 658 87.648000 2772 3337 1 chr1D.!!$F1 565
16 TraesCS2B01G196600 chr6B 710078216 710078833 617 False 652.000000 652 86.207000 2842 3458 1 chr6B.!!$F3 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 306 0.030235 CATTGTCAGGATGCATGCGG 59.970 55.0 14.09 12.46 34.76 5.69 F
591 597 0.031178 ACGTTTTAGTCGCGACAGGT 59.969 50.0 37.85 25.39 0.00 4.00 F
1592 2196 0.043652 GTGTGCGTACGTGTGTTGTC 60.044 55.0 17.90 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1573 2153 0.043652 GACAACACACGTACGCACAC 60.044 55.0 16.72 0.0 0.0 3.82 R
1934 2708 0.389948 GTGGAGCTTGGTGAGGTACG 60.390 60.0 0.00 0.0 39.7 3.67 R
2739 3582 1.934220 CTTCAGTCCTCGCGCCACTA 61.934 60.0 0.00 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.513209 CCACCCATCCGGCTTTTAT 57.487 52.632 0.00 0.00 33.26 1.40
19 20 1.032014 CCACCCATCCGGCTTTTATG 58.968 55.000 0.00 0.00 33.26 1.90
20 21 0.385390 CACCCATCCGGCTTTTATGC 59.615 55.000 0.00 0.00 33.26 3.14
29 30 1.751437 GGCTTTTATGCCGGAGAACT 58.249 50.000 5.05 0.00 43.74 3.01
30 31 1.401905 GGCTTTTATGCCGGAGAACTG 59.598 52.381 5.05 0.00 43.74 3.16
31 32 1.202188 GCTTTTATGCCGGAGAACTGC 60.202 52.381 5.05 0.00 0.00 4.40
32 33 2.359900 CTTTTATGCCGGAGAACTGCT 58.640 47.619 5.05 0.00 0.00 4.24
33 34 2.024176 TTTATGCCGGAGAACTGCTC 57.976 50.000 5.05 0.00 43.17 4.26
34 35 1.195115 TTATGCCGGAGAACTGCTCT 58.805 50.000 5.05 0.00 43.43 4.09
35 36 1.195115 TATGCCGGAGAACTGCTCTT 58.805 50.000 5.05 0.00 43.43 2.85
36 37 0.326264 ATGCCGGAGAACTGCTCTTT 59.674 50.000 5.05 0.00 43.43 2.52
37 38 0.108585 TGCCGGAGAACTGCTCTTTT 59.891 50.000 5.05 0.00 43.43 2.27
38 39 0.519077 GCCGGAGAACTGCTCTTTTG 59.481 55.000 5.05 0.00 43.43 2.44
39 40 1.160137 CCGGAGAACTGCTCTTTTGG 58.840 55.000 0.00 0.00 43.43 3.28
40 41 0.519077 CGGAGAACTGCTCTTTTGGC 59.481 55.000 0.00 0.00 43.43 4.52
41 42 1.879796 CGGAGAACTGCTCTTTTGGCT 60.880 52.381 0.00 0.00 43.43 4.75
42 43 1.809547 GGAGAACTGCTCTTTTGGCTC 59.190 52.381 0.00 0.00 43.43 4.70
43 44 1.462670 GAGAACTGCTCTTTTGGCTCG 59.537 52.381 0.00 0.00 40.61 5.03
44 45 1.202698 AGAACTGCTCTTTTGGCTCGT 60.203 47.619 0.00 0.00 0.00 4.18
45 46 1.195674 GAACTGCTCTTTTGGCTCGTC 59.804 52.381 0.00 0.00 0.00 4.20
46 47 0.946221 ACTGCTCTTTTGGCTCGTCG 60.946 55.000 0.00 0.00 0.00 5.12
47 48 1.630244 CTGCTCTTTTGGCTCGTCGG 61.630 60.000 0.00 0.00 0.00 4.79
48 49 1.374252 GCTCTTTTGGCTCGTCGGA 60.374 57.895 0.00 0.00 0.00 4.55
49 50 0.741221 GCTCTTTTGGCTCGTCGGAT 60.741 55.000 0.00 0.00 0.00 4.18
50 51 1.002366 CTCTTTTGGCTCGTCGGATG 58.998 55.000 0.00 0.00 0.00 3.51
51 52 1.019278 TCTTTTGGCTCGTCGGATGC 61.019 55.000 0.00 0.00 0.00 3.91
52 53 1.982073 CTTTTGGCTCGTCGGATGCC 61.982 60.000 14.72 14.72 46.26 4.40
55 56 2.663188 GGCTCGTCGGATGCCATC 60.663 66.667 16.06 0.00 45.46 3.51
56 57 3.032609 GCTCGTCGGATGCCATCG 61.033 66.667 0.00 0.00 0.00 3.84
57 58 2.721859 CTCGTCGGATGCCATCGA 59.278 61.111 0.00 0.00 0.00 3.59
58 59 1.065764 CTCGTCGGATGCCATCGAA 59.934 57.895 0.00 0.00 37.14 3.71
59 60 0.527600 CTCGTCGGATGCCATCGAAA 60.528 55.000 0.00 0.00 37.14 3.46
60 61 0.527600 TCGTCGGATGCCATCGAAAG 60.528 55.000 0.00 0.00 37.14 2.62
77 78 5.793817 TCGAAAGAGTGGAGAAAATGATGA 58.206 37.500 0.00 0.00 34.84 2.92
78 79 6.230472 TCGAAAGAGTGGAGAAAATGATGAA 58.770 36.000 0.00 0.00 34.84 2.57
79 80 6.369890 TCGAAAGAGTGGAGAAAATGATGAAG 59.630 38.462 0.00 0.00 34.84 3.02
80 81 6.402983 CGAAAGAGTGGAGAAAATGATGAAGG 60.403 42.308 0.00 0.00 0.00 3.46
81 82 5.768980 AGAGTGGAGAAAATGATGAAGGA 57.231 39.130 0.00 0.00 0.00 3.36
82 83 5.743117 AGAGTGGAGAAAATGATGAAGGAG 58.257 41.667 0.00 0.00 0.00 3.69
83 84 4.853007 AGTGGAGAAAATGATGAAGGAGG 58.147 43.478 0.00 0.00 0.00 4.30
84 85 4.537688 AGTGGAGAAAATGATGAAGGAGGA 59.462 41.667 0.00 0.00 0.00 3.71
85 86 4.880696 GTGGAGAAAATGATGAAGGAGGAG 59.119 45.833 0.00 0.00 0.00 3.69
86 87 4.784838 TGGAGAAAATGATGAAGGAGGAGA 59.215 41.667 0.00 0.00 0.00 3.71
87 88 5.431073 TGGAGAAAATGATGAAGGAGGAGAT 59.569 40.000 0.00 0.00 0.00 2.75
88 89 5.764192 GGAGAAAATGATGAAGGAGGAGATG 59.236 44.000 0.00 0.00 0.00 2.90
89 90 5.692928 AGAAAATGATGAAGGAGGAGATGG 58.307 41.667 0.00 0.00 0.00 3.51
90 91 4.450305 AAATGATGAAGGAGGAGATGGG 57.550 45.455 0.00 0.00 0.00 4.00
91 92 1.811778 TGATGAAGGAGGAGATGGGG 58.188 55.000 0.00 0.00 0.00 4.96
92 93 1.294986 TGATGAAGGAGGAGATGGGGA 59.705 52.381 0.00 0.00 0.00 4.81
93 94 1.977129 GATGAAGGAGGAGATGGGGAG 59.023 57.143 0.00 0.00 0.00 4.30
94 95 0.692419 TGAAGGAGGAGATGGGGAGC 60.692 60.000 0.00 0.00 0.00 4.70
95 96 1.753368 GAAGGAGGAGATGGGGAGCG 61.753 65.000 0.00 0.00 0.00 5.03
96 97 3.237741 GGAGGAGATGGGGAGCGG 61.238 72.222 0.00 0.00 0.00 5.52
97 98 3.934962 GAGGAGATGGGGAGCGGC 61.935 72.222 0.00 0.00 0.00 6.53
111 112 4.988598 CGGCGGAGTGGTGCACTT 62.989 66.667 17.98 2.54 45.44 3.16
112 113 3.050275 GGCGGAGTGGTGCACTTC 61.050 66.667 17.98 11.85 45.44 3.01
113 114 2.031163 GCGGAGTGGTGCACTTCT 59.969 61.111 17.98 14.79 45.44 2.85
114 115 1.598130 GCGGAGTGGTGCACTTCTT 60.598 57.895 17.98 0.00 45.44 2.52
115 116 1.845809 GCGGAGTGGTGCACTTCTTG 61.846 60.000 17.98 12.13 45.44 3.02
126 127 2.869358 CACTTCTTGCACGACATCTG 57.131 50.000 0.00 0.00 0.00 2.90
127 128 1.462283 CACTTCTTGCACGACATCTGG 59.538 52.381 0.00 0.00 0.00 3.86
128 129 0.445436 CTTCTTGCACGACATCTGGC 59.555 55.000 0.00 0.00 0.00 4.85
129 130 0.955428 TTCTTGCACGACATCTGGCC 60.955 55.000 0.00 0.00 0.00 5.36
130 131 1.376424 CTTGCACGACATCTGGCCT 60.376 57.895 3.32 0.00 0.00 5.19
131 132 1.364626 CTTGCACGACATCTGGCCTC 61.365 60.000 3.32 0.00 0.00 4.70
132 133 2.887568 GCACGACATCTGGCCTCG 60.888 66.667 3.32 7.10 0.00 4.63
133 134 2.573869 CACGACATCTGGCCTCGT 59.426 61.111 10.90 10.90 41.23 4.18
134 135 1.079819 CACGACATCTGGCCTCGTT 60.080 57.895 13.73 0.00 38.57 3.85
135 136 0.670546 CACGACATCTGGCCTCGTTT 60.671 55.000 13.73 0.00 38.57 3.60
136 137 0.892755 ACGACATCTGGCCTCGTTTA 59.107 50.000 10.90 0.00 37.35 2.01
137 138 1.274167 ACGACATCTGGCCTCGTTTAA 59.726 47.619 10.90 0.00 37.35 1.52
138 139 2.289195 ACGACATCTGGCCTCGTTTAAA 60.289 45.455 10.90 0.00 37.35 1.52
139 140 2.936498 CGACATCTGGCCTCGTTTAAAT 59.064 45.455 3.32 0.00 0.00 1.40
140 141 4.116961 CGACATCTGGCCTCGTTTAAATA 58.883 43.478 3.32 0.00 0.00 1.40
141 142 4.209288 CGACATCTGGCCTCGTTTAAATAG 59.791 45.833 3.32 0.00 0.00 1.73
142 143 5.353394 ACATCTGGCCTCGTTTAAATAGA 57.647 39.130 3.32 0.00 0.00 1.98
143 144 5.930135 ACATCTGGCCTCGTTTAAATAGAT 58.070 37.500 3.32 0.00 0.00 1.98
144 145 5.760253 ACATCTGGCCTCGTTTAAATAGATG 59.240 40.000 16.62 16.62 43.47 2.90
145 146 5.607939 TCTGGCCTCGTTTAAATAGATGA 57.392 39.130 3.32 0.00 0.00 2.92
146 147 5.357257 TCTGGCCTCGTTTAAATAGATGAC 58.643 41.667 3.32 0.00 0.00 3.06
147 148 4.116961 TGGCCTCGTTTAAATAGATGACG 58.883 43.478 3.32 0.00 35.24 4.35
148 149 3.493503 GGCCTCGTTTAAATAGATGACGG 59.506 47.826 0.00 0.00 34.72 4.79
149 150 4.365723 GCCTCGTTTAAATAGATGACGGA 58.634 43.478 0.00 0.00 34.72 4.69
150 151 4.208666 GCCTCGTTTAAATAGATGACGGAC 59.791 45.833 0.00 0.00 34.72 4.79
151 152 5.345702 CCTCGTTTAAATAGATGACGGACA 58.654 41.667 0.00 0.00 34.72 4.02
152 153 5.459107 CCTCGTTTAAATAGATGACGGACAG 59.541 44.000 0.00 0.00 34.72 3.51
153 154 6.198650 TCGTTTAAATAGATGACGGACAGA 57.801 37.500 0.00 0.00 34.72 3.41
154 155 6.623486 TCGTTTAAATAGATGACGGACAGAA 58.377 36.000 0.00 0.00 34.72 3.02
155 156 6.750501 TCGTTTAAATAGATGACGGACAGAAG 59.249 38.462 0.00 0.00 34.72 2.85
156 157 6.750501 CGTTTAAATAGATGACGGACAGAAGA 59.249 38.462 0.00 0.00 0.00 2.87
157 158 7.274904 CGTTTAAATAGATGACGGACAGAAGAA 59.725 37.037 0.00 0.00 0.00 2.52
158 159 8.596380 GTTTAAATAGATGACGGACAGAAGAAG 58.404 37.037 0.00 0.00 0.00 2.85
159 160 2.663826 AGATGACGGACAGAAGAAGC 57.336 50.000 0.00 0.00 0.00 3.86
160 161 1.205893 AGATGACGGACAGAAGAAGCC 59.794 52.381 0.00 0.00 0.00 4.35
161 162 1.205893 GATGACGGACAGAAGAAGCCT 59.794 52.381 0.00 0.00 0.00 4.58
162 163 0.318441 TGACGGACAGAAGAAGCCTG 59.682 55.000 0.00 0.00 37.64 4.85
163 164 1.004440 ACGGACAGAAGAAGCCTGC 60.004 57.895 0.00 0.00 35.14 4.85
164 165 1.743252 CGGACAGAAGAAGCCTGCC 60.743 63.158 0.00 0.00 35.14 4.85
165 166 1.682257 GGACAGAAGAAGCCTGCCT 59.318 57.895 0.00 0.00 35.14 4.75
166 167 0.905357 GGACAGAAGAAGCCTGCCTA 59.095 55.000 0.00 0.00 35.14 3.93
167 168 1.134551 GGACAGAAGAAGCCTGCCTAG 60.135 57.143 0.00 0.00 35.14 3.02
168 169 1.827969 GACAGAAGAAGCCTGCCTAGA 59.172 52.381 0.00 0.00 35.14 2.43
169 170 1.830477 ACAGAAGAAGCCTGCCTAGAG 59.170 52.381 0.00 0.00 35.14 2.43
170 171 1.830477 CAGAAGAAGCCTGCCTAGAGT 59.170 52.381 0.00 0.00 0.00 3.24
171 172 2.235898 CAGAAGAAGCCTGCCTAGAGTT 59.764 50.000 0.00 0.00 0.00 3.01
172 173 2.235898 AGAAGAAGCCTGCCTAGAGTTG 59.764 50.000 0.00 0.00 0.00 3.16
173 174 0.251634 AGAAGCCTGCCTAGAGTTGC 59.748 55.000 0.00 0.00 0.00 4.17
174 175 1.078848 AAGCCTGCCTAGAGTTGCG 60.079 57.895 0.00 0.00 0.00 4.85
175 176 1.831652 AAGCCTGCCTAGAGTTGCGT 61.832 55.000 0.00 0.00 0.00 5.24
176 177 1.376037 GCCTGCCTAGAGTTGCGTT 60.376 57.895 0.00 0.00 0.00 4.84
177 178 0.955919 GCCTGCCTAGAGTTGCGTTT 60.956 55.000 0.00 0.00 0.00 3.60
178 179 1.674817 GCCTGCCTAGAGTTGCGTTTA 60.675 52.381 0.00 0.00 0.00 2.01
179 180 2.695359 CCTGCCTAGAGTTGCGTTTAA 58.305 47.619 0.00 0.00 0.00 1.52
180 181 3.270877 CCTGCCTAGAGTTGCGTTTAAT 58.729 45.455 0.00 0.00 0.00 1.40
181 182 3.063997 CCTGCCTAGAGTTGCGTTTAATG 59.936 47.826 0.00 0.00 0.00 1.90
182 183 2.418628 TGCCTAGAGTTGCGTTTAATGC 59.581 45.455 1.67 1.67 0.00 3.56
183 184 2.223272 GCCTAGAGTTGCGTTTAATGCC 60.223 50.000 6.70 0.00 0.00 4.40
184 185 3.270877 CCTAGAGTTGCGTTTAATGCCT 58.729 45.455 6.70 0.00 0.00 4.75
185 186 3.063997 CCTAGAGTTGCGTTTAATGCCTG 59.936 47.826 6.70 0.00 0.00 4.85
186 187 1.200020 AGAGTTGCGTTTAATGCCTGC 59.800 47.619 6.70 0.00 0.00 4.85
187 188 0.243636 AGTTGCGTTTAATGCCTGCC 59.756 50.000 6.70 0.00 0.00 4.85
188 189 0.735978 GTTGCGTTTAATGCCTGCCC 60.736 55.000 6.70 0.00 0.00 5.36
189 190 2.102161 GCGTTTAATGCCTGCCCG 59.898 61.111 0.00 0.00 0.00 6.13
190 191 2.696759 GCGTTTAATGCCTGCCCGT 61.697 57.895 0.00 0.00 0.00 5.28
191 192 1.880186 CGTTTAATGCCTGCCCGTT 59.120 52.632 0.00 0.00 0.00 4.44
192 193 0.179174 CGTTTAATGCCTGCCCGTTC 60.179 55.000 0.00 0.00 0.00 3.95
193 194 0.179174 GTTTAATGCCTGCCCGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
194 195 0.606944 TTTAATGCCTGCCCGTTCGT 60.607 50.000 0.00 0.00 0.00 3.85
195 196 1.302383 TTAATGCCTGCCCGTTCGTG 61.302 55.000 0.00 0.00 0.00 4.35
196 197 2.173758 TAATGCCTGCCCGTTCGTGA 62.174 55.000 0.00 0.00 0.00 4.35
197 198 3.545124 ATGCCTGCCCGTTCGTGAA 62.545 57.895 0.00 0.00 0.00 3.18
198 199 3.723348 GCCTGCCCGTTCGTGAAC 61.723 66.667 2.63 2.63 37.92 3.18
206 207 4.002037 GTTCGTGAACGGACGTGT 57.998 55.556 0.00 0.00 38.18 4.49
207 208 1.556484 GTTCGTGAACGGACGTGTG 59.444 57.895 0.00 0.00 38.18 3.82
208 209 1.589461 TTCGTGAACGGACGTGTGG 60.589 57.895 0.00 0.00 40.34 4.17
209 210 2.278989 CGTGAACGGACGTGTGGT 60.279 61.111 0.00 0.00 34.56 4.16
210 211 1.879430 CGTGAACGGACGTGTGGTT 60.879 57.895 0.00 0.00 34.56 3.67
211 212 1.639534 GTGAACGGACGTGTGGTTG 59.360 57.895 0.00 0.00 0.00 3.77
212 213 1.521906 TGAACGGACGTGTGGTTGG 60.522 57.895 0.00 0.00 0.00 3.77
213 214 1.227321 GAACGGACGTGTGGTTGGA 60.227 57.895 0.00 0.00 0.00 3.53
214 215 1.219522 GAACGGACGTGTGGTTGGAG 61.220 60.000 0.00 0.00 0.00 3.86
215 216 1.963464 AACGGACGTGTGGTTGGAGT 61.963 55.000 0.00 0.00 0.00 3.85
216 217 1.108727 ACGGACGTGTGGTTGGAGTA 61.109 55.000 0.00 0.00 0.00 2.59
217 218 0.032403 CGGACGTGTGGTTGGAGTAA 59.968 55.000 0.00 0.00 0.00 2.24
218 219 1.792006 GGACGTGTGGTTGGAGTAAG 58.208 55.000 0.00 0.00 0.00 2.34
219 220 1.069668 GGACGTGTGGTTGGAGTAAGT 59.930 52.381 0.00 0.00 0.00 2.24
220 221 2.484241 GGACGTGTGGTTGGAGTAAGTT 60.484 50.000 0.00 0.00 0.00 2.66
221 222 3.200483 GACGTGTGGTTGGAGTAAGTTT 58.800 45.455 0.00 0.00 0.00 2.66
222 223 3.200483 ACGTGTGGTTGGAGTAAGTTTC 58.800 45.455 0.00 0.00 0.00 2.78
223 224 3.118519 ACGTGTGGTTGGAGTAAGTTTCT 60.119 43.478 0.00 0.00 0.00 2.52
224 225 3.875134 CGTGTGGTTGGAGTAAGTTTCTT 59.125 43.478 0.00 0.00 0.00 2.52
225 226 4.260620 CGTGTGGTTGGAGTAAGTTTCTTG 60.261 45.833 0.00 0.00 0.00 3.02
226 227 4.036380 GTGTGGTTGGAGTAAGTTTCTTGG 59.964 45.833 0.00 0.00 0.00 3.61
227 228 4.204799 GTGGTTGGAGTAAGTTTCTTGGT 58.795 43.478 0.00 0.00 0.00 3.67
228 229 4.643334 GTGGTTGGAGTAAGTTTCTTGGTT 59.357 41.667 0.00 0.00 0.00 3.67
229 230 5.126545 GTGGTTGGAGTAAGTTTCTTGGTTT 59.873 40.000 0.00 0.00 0.00 3.27
230 231 5.358725 TGGTTGGAGTAAGTTTCTTGGTTTC 59.641 40.000 0.00 0.00 0.00 2.78
231 232 5.221185 GGTTGGAGTAAGTTTCTTGGTTTCC 60.221 44.000 0.00 0.00 0.00 3.13
232 233 5.118729 TGGAGTAAGTTTCTTGGTTTCCA 57.881 39.130 0.00 0.00 0.00 3.53
233 234 4.885325 TGGAGTAAGTTTCTTGGTTTCCAC 59.115 41.667 0.00 0.00 30.78 4.02
234 235 4.024302 GGAGTAAGTTTCTTGGTTTCCACG 60.024 45.833 0.00 0.00 30.78 4.94
235 236 4.520179 AGTAAGTTTCTTGGTTTCCACGT 58.480 39.130 0.00 0.00 30.78 4.49
236 237 3.775661 AAGTTTCTTGGTTTCCACGTG 57.224 42.857 9.08 9.08 30.78 4.49
237 238 2.718563 AGTTTCTTGGTTTCCACGTGT 58.281 42.857 15.65 0.00 30.78 4.49
238 239 2.422127 AGTTTCTTGGTTTCCACGTGTG 59.578 45.455 15.65 6.24 30.78 3.82
239 240 2.116827 TTCTTGGTTTCCACGTGTGT 57.883 45.000 15.65 0.00 30.78 3.72
240 241 2.116827 TCTTGGTTTCCACGTGTGTT 57.883 45.000 15.65 0.00 30.78 3.32
241 242 2.438411 TCTTGGTTTCCACGTGTGTTT 58.562 42.857 15.65 0.00 30.78 2.83
242 243 3.607741 TCTTGGTTTCCACGTGTGTTTA 58.392 40.909 15.65 0.00 30.78 2.01
243 244 3.623960 TCTTGGTTTCCACGTGTGTTTAG 59.376 43.478 15.65 3.20 30.78 1.85
244 245 2.988570 TGGTTTCCACGTGTGTTTAGT 58.011 42.857 15.65 0.00 0.00 2.24
245 246 2.678836 TGGTTTCCACGTGTGTTTAGTG 59.321 45.455 15.65 0.00 35.79 2.74
250 251 0.865769 CACGTGTGTTTAGTGGAGGC 59.134 55.000 7.58 0.00 32.68 4.70
251 252 0.599204 ACGTGTGTTTAGTGGAGGCG 60.599 55.000 0.00 0.00 0.00 5.52
252 253 0.599204 CGTGTGTTTAGTGGAGGCGT 60.599 55.000 0.00 0.00 0.00 5.68
253 254 1.589803 GTGTGTTTAGTGGAGGCGTT 58.410 50.000 0.00 0.00 0.00 4.84
254 255 1.944709 GTGTGTTTAGTGGAGGCGTTT 59.055 47.619 0.00 0.00 0.00 3.60
255 256 1.944024 TGTGTTTAGTGGAGGCGTTTG 59.056 47.619 0.00 0.00 0.00 2.93
256 257 2.215196 GTGTTTAGTGGAGGCGTTTGA 58.785 47.619 0.00 0.00 0.00 2.69
257 258 2.614983 GTGTTTAGTGGAGGCGTTTGAA 59.385 45.455 0.00 0.00 0.00 2.69
258 259 3.252458 GTGTTTAGTGGAGGCGTTTGAAT 59.748 43.478 0.00 0.00 0.00 2.57
259 260 3.252215 TGTTTAGTGGAGGCGTTTGAATG 59.748 43.478 0.00 0.00 0.00 2.67
260 261 2.851263 TAGTGGAGGCGTTTGAATGT 57.149 45.000 0.00 0.00 0.00 2.71
261 262 1.238439 AGTGGAGGCGTTTGAATGTG 58.762 50.000 0.00 0.00 0.00 3.21
262 263 0.240945 GTGGAGGCGTTTGAATGTGG 59.759 55.000 0.00 0.00 0.00 4.17
263 264 1.212751 GGAGGCGTTTGAATGTGGC 59.787 57.895 0.00 0.00 0.00 5.01
264 265 1.154225 GAGGCGTTTGAATGTGGCG 60.154 57.895 0.00 0.00 0.00 5.69
265 266 1.573829 GAGGCGTTTGAATGTGGCGA 61.574 55.000 0.00 0.00 0.00 5.54
266 267 1.442017 GGCGTTTGAATGTGGCGAC 60.442 57.895 0.00 0.00 0.00 5.19
267 268 1.442017 GCGTTTGAATGTGGCGACC 60.442 57.895 0.00 0.00 0.00 4.79
268 269 1.209127 CGTTTGAATGTGGCGACCC 59.791 57.895 0.00 0.00 0.00 4.46
269 270 1.234615 CGTTTGAATGTGGCGACCCT 61.235 55.000 0.00 0.00 0.00 4.34
270 271 0.958822 GTTTGAATGTGGCGACCCTT 59.041 50.000 0.00 0.00 0.00 3.95
271 272 0.958091 TTTGAATGTGGCGACCCTTG 59.042 50.000 0.00 0.00 0.00 3.61
272 273 0.179004 TTGAATGTGGCGACCCTTGT 60.179 50.000 0.00 0.00 0.00 3.16
273 274 0.179004 TGAATGTGGCGACCCTTGTT 60.179 50.000 0.00 0.00 0.00 2.83
274 275 0.240945 GAATGTGGCGACCCTTGTTG 59.759 55.000 0.00 0.00 0.00 3.33
275 276 1.178534 AATGTGGCGACCCTTGTTGG 61.179 55.000 0.00 0.00 0.00 3.77
276 277 2.063015 ATGTGGCGACCCTTGTTGGA 62.063 55.000 0.00 0.00 38.35 3.53
277 278 1.303317 GTGGCGACCCTTGTTGGAT 60.303 57.895 0.00 0.00 38.35 3.41
278 279 1.002624 TGGCGACCCTTGTTGGATC 60.003 57.895 0.00 0.00 38.35 3.36
279 280 1.299976 GGCGACCCTTGTTGGATCT 59.700 57.895 0.00 0.00 38.35 2.75
280 281 1.026718 GGCGACCCTTGTTGGATCTG 61.027 60.000 0.00 0.00 38.35 2.90
281 282 1.026718 GCGACCCTTGTTGGATCTGG 61.027 60.000 0.00 0.00 38.35 3.86
282 283 0.613260 CGACCCTTGTTGGATCTGGA 59.387 55.000 0.00 0.00 38.35 3.86
283 284 1.676014 CGACCCTTGTTGGATCTGGAC 60.676 57.143 0.00 0.00 38.35 4.02
284 285 1.351017 GACCCTTGTTGGATCTGGACA 59.649 52.381 0.00 0.00 38.35 4.02
285 286 1.352352 ACCCTTGTTGGATCTGGACAG 59.648 52.381 0.00 0.00 38.35 3.51
286 287 1.457346 CCTTGTTGGATCTGGACAGC 58.543 55.000 0.00 0.00 38.35 4.40
287 288 1.271543 CCTTGTTGGATCTGGACAGCA 60.272 52.381 0.00 0.00 38.35 4.41
288 289 2.619849 CCTTGTTGGATCTGGACAGCAT 60.620 50.000 0.00 0.00 38.35 3.79
289 290 2.885135 TGTTGGATCTGGACAGCATT 57.115 45.000 0.00 0.00 0.00 3.56
290 291 2.439409 TGTTGGATCTGGACAGCATTG 58.561 47.619 0.00 0.00 0.00 2.82
291 292 2.224843 TGTTGGATCTGGACAGCATTGT 60.225 45.455 0.00 0.00 41.18 2.71
303 304 3.267900 GCATTGTCAGGATGCATGC 57.732 52.632 11.82 11.82 46.96 4.06
304 305 0.594028 GCATTGTCAGGATGCATGCG 60.594 55.000 14.09 8.03 46.96 4.73
305 306 0.030235 CATTGTCAGGATGCATGCGG 59.970 55.000 14.09 12.46 34.76 5.69
306 307 1.105167 ATTGTCAGGATGCATGCGGG 61.105 55.000 17.49 11.84 34.76 6.13
307 308 2.190313 GTCAGGATGCATGCGGGA 59.810 61.111 17.49 13.88 34.76 5.14
308 309 1.890979 GTCAGGATGCATGCGGGAG 60.891 63.158 17.49 7.45 34.76 4.30
309 310 2.593725 CAGGATGCATGCGGGAGG 60.594 66.667 14.09 0.00 0.00 4.30
310 311 3.092511 AGGATGCATGCGGGAGGT 61.093 61.111 14.09 0.00 0.00 3.85
311 312 2.124151 GGATGCATGCGGGAGGTT 60.124 61.111 14.09 0.00 0.00 3.50
312 313 1.754234 GGATGCATGCGGGAGGTTT 60.754 57.895 14.09 0.00 0.00 3.27
313 314 1.434696 GATGCATGCGGGAGGTTTG 59.565 57.895 14.09 0.00 0.00 2.93
314 315 1.001020 ATGCATGCGGGAGGTTTGA 60.001 52.632 14.09 0.00 0.00 2.69
315 316 1.033746 ATGCATGCGGGAGGTTTGAG 61.034 55.000 14.09 0.00 0.00 3.02
316 317 3.056313 GCATGCGGGAGGTTTGAGC 62.056 63.158 0.00 0.00 0.00 4.26
317 318 2.044946 ATGCGGGAGGTTTGAGCC 60.045 61.111 0.00 0.00 0.00 4.70
318 319 3.645268 ATGCGGGAGGTTTGAGCCC 62.645 63.158 0.00 0.00 38.53 5.19
319 320 4.035102 GCGGGAGGTTTGAGCCCT 62.035 66.667 0.00 0.00 39.79 5.19
320 321 2.666098 GCGGGAGGTTTGAGCCCTA 61.666 63.158 0.00 0.00 39.79 3.53
321 322 1.988015 CGGGAGGTTTGAGCCCTAA 59.012 57.895 0.00 0.00 39.79 2.69
322 323 0.326927 CGGGAGGTTTGAGCCCTAAA 59.673 55.000 0.00 0.00 39.79 1.85
323 324 1.271707 CGGGAGGTTTGAGCCCTAAAA 60.272 52.381 0.00 0.00 39.79 1.52
324 325 2.816337 CGGGAGGTTTGAGCCCTAAAAA 60.816 50.000 0.00 0.00 39.79 1.94
325 326 2.826128 GGGAGGTTTGAGCCCTAAAAAG 59.174 50.000 0.00 0.00 38.85 2.27
326 327 2.826128 GGAGGTTTGAGCCCTAAAAAGG 59.174 50.000 0.00 0.00 30.60 3.11
339 340 5.917462 CCCTAAAAAGGCATAGGAAAATGG 58.083 41.667 0.45 0.00 41.03 3.16
340 341 5.425217 CCCTAAAAAGGCATAGGAAAATGGT 59.575 40.000 0.45 0.00 41.03 3.55
341 342 6.340522 CCTAAAAAGGCATAGGAAAATGGTG 58.659 40.000 0.00 0.00 41.03 4.17
342 343 5.823861 AAAAAGGCATAGGAAAATGGTGT 57.176 34.783 0.00 0.00 0.00 4.16
343 344 6.926630 AAAAAGGCATAGGAAAATGGTGTA 57.073 33.333 0.00 0.00 0.00 2.90
344 345 6.530019 AAAAGGCATAGGAAAATGGTGTAG 57.470 37.500 0.00 0.00 0.00 2.74
345 346 4.862641 AGGCATAGGAAAATGGTGTAGT 57.137 40.909 0.00 0.00 0.00 2.73
346 347 5.193099 AGGCATAGGAAAATGGTGTAGTT 57.807 39.130 0.00 0.00 0.00 2.24
347 348 5.580022 AGGCATAGGAAAATGGTGTAGTTT 58.420 37.500 0.00 0.00 0.00 2.66
348 349 6.016555 AGGCATAGGAAAATGGTGTAGTTTT 58.983 36.000 0.00 0.00 0.00 2.43
349 350 6.152831 AGGCATAGGAAAATGGTGTAGTTTTC 59.847 38.462 0.00 0.00 41.36 2.29
350 351 6.152831 GGCATAGGAAAATGGTGTAGTTTTCT 59.847 38.462 9.56 0.00 41.64 2.52
351 352 7.251281 GCATAGGAAAATGGTGTAGTTTTCTC 58.749 38.462 9.56 2.43 41.64 2.87
352 353 7.094377 GCATAGGAAAATGGTGTAGTTTTCTCA 60.094 37.037 9.56 0.97 41.64 3.27
353 354 6.884280 AGGAAAATGGTGTAGTTTTCTCAG 57.116 37.500 9.56 0.00 41.64 3.35
354 355 6.365520 AGGAAAATGGTGTAGTTTTCTCAGT 58.634 36.000 9.56 0.00 41.64 3.41
355 356 7.514721 AGGAAAATGGTGTAGTTTTCTCAGTA 58.485 34.615 9.56 0.00 41.64 2.74
356 357 7.996644 AGGAAAATGGTGTAGTTTTCTCAGTAA 59.003 33.333 9.56 0.00 41.64 2.24
363 364 6.362820 GGTGTAGTTTTCTCAGTAAGTTCTCG 59.637 42.308 0.00 0.00 0.00 4.04
371 372 5.529791 TCTCAGTAAGTTCTCGGAACAAAG 58.470 41.667 15.94 6.63 0.00 2.77
372 373 4.628074 TCAGTAAGTTCTCGGAACAAAGG 58.372 43.478 15.94 5.08 0.00 3.11
378 379 2.526304 TCTCGGAACAAAGGTCACAG 57.474 50.000 0.00 0.00 0.00 3.66
387 388 1.466167 CAAAGGTCACAGCATTCGGAG 59.534 52.381 0.00 0.00 0.00 4.63
389 390 0.247736 AGGTCACAGCATTCGGAGAC 59.752 55.000 0.00 0.00 34.32 3.36
390 391 0.037326 GGTCACAGCATTCGGAGACA 60.037 55.000 0.00 0.00 34.32 3.41
391 392 1.354040 GTCACAGCATTCGGAGACAG 58.646 55.000 0.00 0.00 34.32 3.51
392 393 1.067565 GTCACAGCATTCGGAGACAGA 60.068 52.381 0.00 0.00 34.32 3.41
393 394 1.067565 TCACAGCATTCGGAGACAGAC 60.068 52.381 0.00 0.00 34.32 3.51
394 395 0.109086 ACAGCATTCGGAGACAGACG 60.109 55.000 0.00 0.00 34.32 4.18
396 397 0.453793 AGCATTCGGAGACAGACGAG 59.546 55.000 0.00 0.00 40.51 4.18
397 398 1.142778 GCATTCGGAGACAGACGAGC 61.143 60.000 0.00 0.00 40.51 5.03
406 411 3.129638 GGAGACAGACGAGCAGAGTAAAT 59.870 47.826 0.00 0.00 0.00 1.40
407 412 4.335874 GGAGACAGACGAGCAGAGTAAATA 59.664 45.833 0.00 0.00 0.00 1.40
409 414 4.700692 AGACAGACGAGCAGAGTAAATACA 59.299 41.667 0.00 0.00 0.00 2.29
410 415 4.987832 ACAGACGAGCAGAGTAAATACAG 58.012 43.478 0.00 0.00 0.00 2.74
416 421 4.672862 CGAGCAGAGTAAATACAGTCGATG 59.327 45.833 0.00 0.00 0.00 3.84
422 427 7.255569 CAGAGTAAATACAGTCGATGTTACCA 58.744 38.462 5.94 0.00 39.96 3.25
427 432 2.423577 ACAGTCGATGTTACCAAAGCC 58.576 47.619 0.00 0.00 39.96 4.35
439 444 3.525800 ACCAAAGCCTACAAATCCACT 57.474 42.857 0.00 0.00 0.00 4.00
453 458 4.942761 AATCCACTGAACAACTGCAATT 57.057 36.364 0.00 0.00 0.00 2.32
486 491 5.447683 CCACATAAATTGGTCGACAGTGATG 60.448 44.000 18.91 13.91 0.00 3.07
507 512 4.183865 TGCCACGAATAGAGATCACAAAG 58.816 43.478 0.00 0.00 0.00 2.77
561 567 5.932883 ACCCTTTTCTCGTTTCAGATAGAAC 59.067 40.000 0.00 0.00 35.56 3.01
591 597 0.031178 ACGTTTTAGTCGCGACAGGT 59.969 50.000 37.85 25.39 0.00 4.00
647 653 2.763292 AGGCCAGATGAGCGAGCT 60.763 61.111 5.01 0.00 0.00 4.09
740 989 0.179073 GGTGACGTGATGGATCCCAG 60.179 60.000 9.90 0.00 36.75 4.45
943 1201 2.436646 CTTCGCGGTCCCTTGCAT 60.437 61.111 6.13 0.00 0.00 3.96
994 1255 0.665369 ACGTTGGGTTCATCGTCGAC 60.665 55.000 5.18 5.18 43.30 4.20
1154 1424 4.563786 CCTCCTCCAGGTCAGTTACTTTTC 60.564 50.000 0.00 0.00 37.53 2.29
1165 1435 2.741486 TTACTTTTCAGCGCCGCCCT 62.741 55.000 4.98 0.00 0.00 5.19
1167 1437 3.328288 CTTTTCAGCGCCGCCCTTC 62.328 63.158 4.98 0.00 0.00 3.46
1188 1458 2.921754 CCATCCTTTCGTTCGTGTACTC 59.078 50.000 0.00 0.00 0.00 2.59
1189 1459 3.367087 CCATCCTTTCGTTCGTGTACTCT 60.367 47.826 0.00 0.00 0.00 3.24
1195 1470 5.349817 CCTTTCGTTCGTGTACTCTCTACTA 59.650 44.000 0.00 0.00 0.00 1.82
1210 1485 6.154203 TCTCTACTAGTCGATCGGTTCTTA 57.846 41.667 16.41 1.17 0.00 2.10
1213 1488 3.614092 ACTAGTCGATCGGTTCTTACCA 58.386 45.455 16.41 0.00 45.31 3.25
1229 1505 2.506217 CATGTCACGCCGCGTACT 60.506 61.111 19.71 0.33 38.32 2.73
1232 1508 2.867333 ATGTCACGCCGCGTACTGAG 62.867 60.000 19.71 5.94 38.32 3.35
1234 1510 4.415332 CACGCCGCGTACTGAGGT 62.415 66.667 19.71 0.00 38.32 3.85
1242 1518 1.668101 GCGTACTGAGGTCTGAGGGG 61.668 65.000 0.00 0.00 0.00 4.79
1258 1833 1.569072 AGGGGGTGATGGTTTGGTATC 59.431 52.381 0.00 0.00 0.00 2.24
1482 2057 3.782244 CTGCGACGCTCACAAGGC 61.782 66.667 22.08 0.00 0.00 4.35
1489 2064 3.058160 GCTCACAAGGCACGCCAT 61.058 61.111 11.35 0.00 38.92 4.40
1490 2065 2.872557 CTCACAAGGCACGCCATG 59.127 61.111 11.35 11.47 40.31 3.66
1516 2091 4.271816 CTCCCGTCGCGCTATGCT 62.272 66.667 5.56 0.00 43.27 3.79
1517 2092 4.266070 TCCCGTCGCGCTATGCTC 62.266 66.667 5.56 0.00 43.27 4.26
1519 2094 4.569023 CCGTCGCGCTATGCTCCA 62.569 66.667 5.56 0.00 43.27 3.86
1520 2095 2.582226 CGTCGCGCTATGCTCCAA 60.582 61.111 5.56 0.00 43.27 3.53
1527 2102 3.106986 GCTATGCTCCAAGGCCGGA 62.107 63.158 5.05 0.00 0.00 5.14
1571 2151 1.909700 TTTAGCTGTTTCTGGCCTGG 58.090 50.000 10.07 0.00 0.00 4.45
1573 2153 2.803155 TAGCTGTTTCTGGCCTGGCG 62.803 60.000 13.40 0.00 0.00 5.69
1588 2192 3.324671 GCGTGTGCGTACGTGTGT 61.325 61.111 17.90 0.00 45.36 3.72
1589 2193 2.862776 GCGTGTGCGTACGTGTGTT 61.863 57.895 17.90 0.00 45.36 3.32
1590 2194 1.084541 CGTGTGCGTACGTGTGTTG 60.085 57.895 17.90 0.00 39.13 3.33
1591 2195 1.744811 CGTGTGCGTACGTGTGTTGT 61.745 55.000 17.90 0.00 39.13 3.32
1592 2196 0.043652 GTGTGCGTACGTGTGTTGTC 60.044 55.000 17.90 0.00 0.00 3.18
1593 2197 0.179132 TGTGCGTACGTGTGTTGTCT 60.179 50.000 17.90 0.00 0.00 3.41
1594 2198 0.228742 GTGCGTACGTGTGTTGTCTG 59.771 55.000 17.90 0.00 0.00 3.51
1596 2200 1.202203 GCGTACGTGTGTTGTCTGAA 58.798 50.000 17.90 0.00 0.00 3.02
1598 2202 2.409752 GCGTACGTGTGTTGTCTGAATG 60.410 50.000 17.90 0.00 0.00 2.67
1599 2203 2.792674 CGTACGTGTGTTGTCTGAATGT 59.207 45.455 7.22 0.00 0.00 2.71
1600 2204 3.361627 CGTACGTGTGTTGTCTGAATGTG 60.362 47.826 7.22 0.00 0.00 3.21
1602 2206 3.266636 ACGTGTGTTGTCTGAATGTGAA 58.733 40.909 0.00 0.00 0.00 3.18
1615 2281 5.029807 TGAATGTGAACTCTGTTGGTGTA 57.970 39.130 0.00 0.00 0.00 2.90
1620 2289 6.371809 TGTGAACTCTGTTGGTGTATTTTC 57.628 37.500 0.00 0.00 0.00 2.29
1634 2303 4.638865 GTGTATTTTCGGCAGGGATTACTT 59.361 41.667 0.00 0.00 0.00 2.24
1639 2308 2.914059 TCGGCAGGGATTACTTAAAGC 58.086 47.619 0.00 0.00 0.00 3.51
1682 2351 2.511600 GCATCCACGGTCGAAGGG 60.512 66.667 0.00 0.00 0.00 3.95
1706 2480 2.746277 ATCAGGTTTGCCGACGCC 60.746 61.111 0.00 0.00 40.50 5.68
1712 2486 2.095847 GTTTGCCGACGCCGTGATA 61.096 57.895 0.00 0.00 0.00 2.15
1752 2526 2.921538 CTACTTCAGCGACGGGAGCG 62.922 65.000 0.00 0.00 40.04 5.03
1934 2708 2.682494 TGCGAGTCCTGGGGGTAC 60.682 66.667 0.00 0.00 0.00 3.34
1936 2710 2.362120 CGAGTCCTGGGGGTACGT 60.362 66.667 0.00 0.00 0.00 3.57
1941 2715 1.039785 GTCCTGGGGGTACGTACCTC 61.040 65.000 36.70 34.88 46.39 3.85
1949 2723 0.893447 GGTACGTACCTCACCAAGCT 59.107 55.000 32.93 0.00 43.10 3.74
1951 2725 1.135170 GTACGTACCTCACCAAGCTCC 60.135 57.143 15.00 0.00 0.00 4.70
1952 2726 0.830444 ACGTACCTCACCAAGCTCCA 60.830 55.000 0.00 0.00 0.00 3.86
1954 2728 0.036294 GTACCTCACCAAGCTCCACC 60.036 60.000 0.00 0.00 0.00 4.61
1956 2730 2.743928 CTCACCAAGCTCCACCGC 60.744 66.667 0.00 0.00 0.00 5.68
1957 2731 3.535629 CTCACCAAGCTCCACCGCA 62.536 63.158 0.00 0.00 0.00 5.69
1960 2734 2.360350 CCAAGCTCCACCGCACAT 60.360 61.111 0.00 0.00 0.00 3.21
1961 2735 2.401766 CCAAGCTCCACCGCACATC 61.402 63.158 0.00 0.00 0.00 3.06
1963 2737 3.958147 AAGCTCCACCGCACATCCG 62.958 63.158 0.00 0.00 0.00 4.18
1986 2760 0.663688 GCTCGCCGTTGATCTCTCTA 59.336 55.000 0.00 0.00 0.00 2.43
1987 2761 1.598430 GCTCGCCGTTGATCTCTCTAC 60.598 57.143 0.00 0.00 0.00 2.59
1995 2795 4.498850 CCGTTGATCTCTCTACTGACCATG 60.499 50.000 0.00 0.00 0.00 3.66
1996 2796 4.336713 CGTTGATCTCTCTACTGACCATGA 59.663 45.833 0.00 0.00 0.00 3.07
1997 2797 5.505489 CGTTGATCTCTCTACTGACCATGAG 60.505 48.000 0.00 0.00 0.00 2.90
2001 2801 6.838090 TGATCTCTCTACTGACCATGAGATTT 59.162 38.462 0.00 0.00 40.15 2.17
2004 2804 5.423015 TCTCTACTGACCATGAGATTTTGC 58.577 41.667 0.00 0.00 31.53 3.68
2007 2807 2.744202 ACTGACCATGAGATTTTGCGAC 59.256 45.455 0.00 0.00 0.00 5.19
2024 2824 0.671781 GACGTGCAGGTTCAGATGCT 60.672 55.000 14.12 0.00 42.98 3.79
2026 2826 1.364626 CGTGCAGGTTCAGATGCTCC 61.365 60.000 0.00 0.00 42.98 4.70
2028 2828 0.401356 TGCAGGTTCAGATGCTCCAA 59.599 50.000 0.00 0.00 42.98 3.53
2158 2958 0.679505 TTCTCCAGGTCACACTTCCG 59.320 55.000 0.00 0.00 0.00 4.30
2346 3175 4.776322 CCCATCAAGGCGACGGCA 62.776 66.667 24.23 2.93 42.47 5.69
2443 3272 1.691976 TCCACTTCATCACTTCCGTGT 59.308 47.619 0.00 0.00 41.89 4.49
2611 3453 9.713684 TCCATTTCCAGTGGAATAATAAAGATT 57.286 29.630 25.12 0.00 42.56 2.40
2641 3484 1.253100 ACCCAACTGGCAATTTACGG 58.747 50.000 0.00 0.00 37.83 4.02
2642 3485 0.530288 CCCAACTGGCAATTTACGGG 59.470 55.000 0.00 0.00 0.00 5.28
2652 3495 3.194755 GGCAATTTACGGGTTCCTGAATT 59.805 43.478 4.54 0.00 0.00 2.17
2653 3496 4.421058 GCAATTTACGGGTTCCTGAATTC 58.579 43.478 4.54 0.00 0.00 2.17
2661 3504 2.289565 GGTTCCTGAATTCGGATGGTC 58.710 52.381 16.17 8.54 0.00 4.02
2663 3506 3.545703 GTTCCTGAATTCGGATGGTCAT 58.454 45.455 16.17 0.00 0.00 3.06
2670 3513 5.192176 TGAATTCGGATGGTCATTTCATCA 58.808 37.500 0.04 0.00 41.89 3.07
2739 3582 3.070734 AGCGACTTGGAGATGATGCTTAT 59.929 43.478 0.00 0.00 0.00 1.73
2972 4242 8.085296 CGTTGCAACTCTATCCTAGATATTCTT 58.915 37.037 26.09 0.00 33.66 2.52
3364 4908 6.462552 TTTGTGAGTGAGAGGAGAGATATG 57.537 41.667 0.00 0.00 0.00 1.78
3365 4909 3.888323 TGTGAGTGAGAGGAGAGATATGC 59.112 47.826 0.00 0.00 0.00 3.14
3366 4910 3.888323 GTGAGTGAGAGGAGAGATATGCA 59.112 47.826 0.00 0.00 0.00 3.96
3367 4911 4.022935 GTGAGTGAGAGGAGAGATATGCAG 60.023 50.000 0.00 0.00 0.00 4.41
3369 4913 3.117169 AGTGAGAGGAGAGATATGCAGGT 60.117 47.826 0.00 0.00 0.00 4.00
3389 4935 5.583457 CAGGTATAACTACGGGGAAAAGTTG 59.417 44.000 0.00 0.00 35.23 3.16
3391 4937 5.582269 GGTATAACTACGGGGAAAAGTTGTC 59.418 44.000 0.00 0.00 35.23 3.18
3392 4938 3.564053 AACTACGGGGAAAAGTTGTCA 57.436 42.857 0.00 0.00 32.38 3.58
3393 4939 3.121738 ACTACGGGGAAAAGTTGTCAG 57.878 47.619 0.00 0.00 0.00 3.51
3395 4941 0.841289 ACGGGGAAAAGTTGTCAGGA 59.159 50.000 0.00 0.00 0.00 3.86
3415 5020 4.953579 AGGACTCAGGAGAAATAGTGACTC 59.046 45.833 2.79 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.041153 GGCATAAAAGCCGGATGGG 58.959 57.895 5.05 0.00 46.12 4.00
11 12 1.202188 GCAGTTCTCCGGCATAAAAGC 60.202 52.381 0.00 0.00 0.00 3.51
12 13 2.352960 GAGCAGTTCTCCGGCATAAAAG 59.647 50.000 0.00 0.00 35.77 2.27
13 14 2.027192 AGAGCAGTTCTCCGGCATAAAA 60.027 45.455 0.00 0.00 42.90 1.52
14 15 1.555075 AGAGCAGTTCTCCGGCATAAA 59.445 47.619 0.00 0.00 42.90 1.40
15 16 1.195115 AGAGCAGTTCTCCGGCATAA 58.805 50.000 0.00 0.00 42.90 1.90
16 17 1.195115 AAGAGCAGTTCTCCGGCATA 58.805 50.000 0.00 0.00 42.90 3.14
17 18 0.326264 AAAGAGCAGTTCTCCGGCAT 59.674 50.000 0.00 0.00 42.90 4.40
18 19 0.108585 AAAAGAGCAGTTCTCCGGCA 59.891 50.000 0.00 0.00 42.90 5.69
19 20 0.519077 CAAAAGAGCAGTTCTCCGGC 59.481 55.000 0.00 0.00 42.90 6.13
20 21 1.160137 CCAAAAGAGCAGTTCTCCGG 58.840 55.000 0.00 0.00 42.90 5.14
21 22 0.519077 GCCAAAAGAGCAGTTCTCCG 59.481 55.000 0.00 0.00 42.90 4.63
22 23 1.809547 GAGCCAAAAGAGCAGTTCTCC 59.190 52.381 0.00 0.00 42.90 3.71
23 24 1.462670 CGAGCCAAAAGAGCAGTTCTC 59.537 52.381 0.00 0.00 42.21 2.87
24 25 1.202698 ACGAGCCAAAAGAGCAGTTCT 60.203 47.619 0.00 0.00 37.93 3.01
25 26 1.195674 GACGAGCCAAAAGAGCAGTTC 59.804 52.381 0.00 0.00 0.00 3.01
26 27 1.230324 GACGAGCCAAAAGAGCAGTT 58.770 50.000 0.00 0.00 0.00 3.16
27 28 0.946221 CGACGAGCCAAAAGAGCAGT 60.946 55.000 0.00 0.00 0.00 4.40
28 29 1.630244 CCGACGAGCCAAAAGAGCAG 61.630 60.000 0.00 0.00 0.00 4.24
29 30 1.667830 CCGACGAGCCAAAAGAGCA 60.668 57.895 0.00 0.00 0.00 4.26
30 31 0.741221 ATCCGACGAGCCAAAAGAGC 60.741 55.000 0.00 0.00 0.00 4.09
31 32 1.002366 CATCCGACGAGCCAAAAGAG 58.998 55.000 0.00 0.00 0.00 2.85
32 33 1.019278 GCATCCGACGAGCCAAAAGA 61.019 55.000 0.00 0.00 0.00 2.52
33 34 1.425428 GCATCCGACGAGCCAAAAG 59.575 57.895 0.00 0.00 0.00 2.27
34 35 3.573558 GCATCCGACGAGCCAAAA 58.426 55.556 0.00 0.00 0.00 2.44
39 40 2.954020 TTCGATGGCATCCGACGAGC 62.954 60.000 21.20 0.00 35.88 5.03
40 41 0.527600 TTTCGATGGCATCCGACGAG 60.528 55.000 21.20 6.68 35.88 4.18
41 42 0.527600 CTTTCGATGGCATCCGACGA 60.528 55.000 21.20 12.94 34.26 4.20
42 43 0.527600 TCTTTCGATGGCATCCGACG 60.528 55.000 21.20 10.72 34.26 5.12
43 44 1.212616 CTCTTTCGATGGCATCCGAC 58.787 55.000 21.20 0.00 34.26 4.79
44 45 0.824109 ACTCTTTCGATGGCATCCGA 59.176 50.000 21.20 17.64 0.00 4.55
45 46 0.933097 CACTCTTTCGATGGCATCCG 59.067 55.000 21.20 15.75 0.00 4.18
46 47 1.134401 TCCACTCTTTCGATGGCATCC 60.134 52.381 21.20 4.53 33.20 3.51
47 48 2.159043 TCTCCACTCTTTCGATGGCATC 60.159 50.000 17.58 17.58 33.20 3.91
48 49 1.833630 TCTCCACTCTTTCGATGGCAT 59.166 47.619 0.00 0.00 33.20 4.40
49 50 1.266178 TCTCCACTCTTTCGATGGCA 58.734 50.000 0.00 0.00 33.20 4.92
50 51 2.386661 TTCTCCACTCTTTCGATGGC 57.613 50.000 0.00 0.00 33.20 4.40
51 52 4.937620 TCATTTTCTCCACTCTTTCGATGG 59.062 41.667 0.00 0.00 34.58 3.51
52 53 6.314648 TCATCATTTTCTCCACTCTTTCGATG 59.685 38.462 0.00 0.00 0.00 3.84
53 54 6.409704 TCATCATTTTCTCCACTCTTTCGAT 58.590 36.000 0.00 0.00 0.00 3.59
54 55 5.793817 TCATCATTTTCTCCACTCTTTCGA 58.206 37.500 0.00 0.00 0.00 3.71
55 56 6.402983 CCTTCATCATTTTCTCCACTCTTTCG 60.403 42.308 0.00 0.00 0.00 3.46
56 57 6.656693 TCCTTCATCATTTTCTCCACTCTTTC 59.343 38.462 0.00 0.00 0.00 2.62
57 58 6.546484 TCCTTCATCATTTTCTCCACTCTTT 58.454 36.000 0.00 0.00 0.00 2.52
58 59 6.131972 TCCTTCATCATTTTCTCCACTCTT 57.868 37.500 0.00 0.00 0.00 2.85
59 60 5.339035 CCTCCTTCATCATTTTCTCCACTCT 60.339 44.000 0.00 0.00 0.00 3.24
60 61 4.880696 CCTCCTTCATCATTTTCTCCACTC 59.119 45.833 0.00 0.00 0.00 3.51
61 62 4.537688 TCCTCCTTCATCATTTTCTCCACT 59.462 41.667 0.00 0.00 0.00 4.00
62 63 4.848357 TCCTCCTTCATCATTTTCTCCAC 58.152 43.478 0.00 0.00 0.00 4.02
63 64 4.784838 TCTCCTCCTTCATCATTTTCTCCA 59.215 41.667 0.00 0.00 0.00 3.86
64 65 5.365021 TCTCCTCCTTCATCATTTTCTCC 57.635 43.478 0.00 0.00 0.00 3.71
65 66 5.764192 CCATCTCCTCCTTCATCATTTTCTC 59.236 44.000 0.00 0.00 0.00 2.87
66 67 5.398809 CCCATCTCCTCCTTCATCATTTTCT 60.399 44.000 0.00 0.00 0.00 2.52
67 68 4.826183 CCCATCTCCTCCTTCATCATTTTC 59.174 45.833 0.00 0.00 0.00 2.29
68 69 4.387211 CCCCATCTCCTCCTTCATCATTTT 60.387 45.833 0.00 0.00 0.00 1.82
69 70 3.139770 CCCCATCTCCTCCTTCATCATTT 59.860 47.826 0.00 0.00 0.00 2.32
70 71 2.715336 CCCCATCTCCTCCTTCATCATT 59.285 50.000 0.00 0.00 0.00 2.57
71 72 2.089753 TCCCCATCTCCTCCTTCATCAT 60.090 50.000 0.00 0.00 0.00 2.45
72 73 1.294986 TCCCCATCTCCTCCTTCATCA 59.705 52.381 0.00 0.00 0.00 3.07
73 74 1.977129 CTCCCCATCTCCTCCTTCATC 59.023 57.143 0.00 0.00 0.00 2.92
74 75 2.044469 GCTCCCCATCTCCTCCTTCAT 61.044 57.143 0.00 0.00 0.00 2.57
75 76 0.692419 GCTCCCCATCTCCTCCTTCA 60.692 60.000 0.00 0.00 0.00 3.02
76 77 1.753368 CGCTCCCCATCTCCTCCTTC 61.753 65.000 0.00 0.00 0.00 3.46
77 78 1.764054 CGCTCCCCATCTCCTCCTT 60.764 63.158 0.00 0.00 0.00 3.36
78 79 2.123077 CGCTCCCCATCTCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
79 80 3.237741 CCGCTCCCCATCTCCTCC 61.238 72.222 0.00 0.00 0.00 4.30
80 81 3.934962 GCCGCTCCCCATCTCCTC 61.935 72.222 0.00 0.00 0.00 3.71
94 95 4.988598 AAGTGCACCACTCCGCCG 62.989 66.667 14.63 0.00 44.62 6.46
95 96 3.050275 GAAGTGCACCACTCCGCC 61.050 66.667 14.63 0.00 44.62 6.13
96 97 1.598130 AAGAAGTGCACCACTCCGC 60.598 57.895 14.63 0.00 44.62 5.54
97 98 2.238353 CAAGAAGTGCACCACTCCG 58.762 57.895 14.63 4.77 44.62 4.63
107 108 1.462283 CCAGATGTCGTGCAAGAAGTG 59.538 52.381 3.20 0.00 0.00 3.16
108 109 1.800805 CCAGATGTCGTGCAAGAAGT 58.199 50.000 3.20 0.00 0.00 3.01
109 110 0.445436 GCCAGATGTCGTGCAAGAAG 59.555 55.000 3.20 0.00 0.00 2.85
110 111 0.955428 GGCCAGATGTCGTGCAAGAA 60.955 55.000 3.20 0.00 0.00 2.52
111 112 1.375908 GGCCAGATGTCGTGCAAGA 60.376 57.895 0.00 0.00 0.00 3.02
112 113 1.364626 GAGGCCAGATGTCGTGCAAG 61.365 60.000 5.01 0.00 0.00 4.01
113 114 1.375908 GAGGCCAGATGTCGTGCAA 60.376 57.895 5.01 0.00 0.00 4.08
114 115 2.265739 GAGGCCAGATGTCGTGCA 59.734 61.111 5.01 0.00 0.00 4.57
115 116 2.887568 CGAGGCCAGATGTCGTGC 60.888 66.667 5.01 0.00 0.00 5.34
116 117 0.670546 AAACGAGGCCAGATGTCGTG 60.671 55.000 16.63 0.00 45.83 4.35
118 119 2.004583 TTAAACGAGGCCAGATGTCG 57.995 50.000 5.01 7.80 39.63 4.35
119 120 5.357257 TCTATTTAAACGAGGCCAGATGTC 58.643 41.667 5.01 0.00 0.00 3.06
120 121 5.353394 TCTATTTAAACGAGGCCAGATGT 57.647 39.130 5.01 0.00 0.00 3.06
121 122 5.991606 TCATCTATTTAAACGAGGCCAGATG 59.008 40.000 5.01 10.68 39.51 2.90
122 123 5.992217 GTCATCTATTTAAACGAGGCCAGAT 59.008 40.000 5.01 0.00 0.00 2.90
123 124 5.357257 GTCATCTATTTAAACGAGGCCAGA 58.643 41.667 5.01 0.00 0.00 3.86
124 125 4.209288 CGTCATCTATTTAAACGAGGCCAG 59.791 45.833 5.01 0.00 35.45 4.85
125 126 4.116961 CGTCATCTATTTAAACGAGGCCA 58.883 43.478 5.01 0.00 35.45 5.36
126 127 3.493503 CCGTCATCTATTTAAACGAGGCC 59.506 47.826 0.00 0.00 35.45 5.19
127 128 4.208666 GTCCGTCATCTATTTAAACGAGGC 59.791 45.833 0.00 0.00 35.45 4.70
128 129 5.345702 TGTCCGTCATCTATTTAAACGAGG 58.654 41.667 0.00 0.00 35.45 4.63
129 130 6.263344 TCTGTCCGTCATCTATTTAAACGAG 58.737 40.000 0.00 0.00 35.45 4.18
130 131 6.198650 TCTGTCCGTCATCTATTTAAACGA 57.801 37.500 0.00 0.00 35.45 3.85
131 132 6.750501 TCTTCTGTCCGTCATCTATTTAAACG 59.249 38.462 0.00 0.00 0.00 3.60
132 133 8.475331 TTCTTCTGTCCGTCATCTATTTAAAC 57.525 34.615 0.00 0.00 0.00 2.01
133 134 7.277981 GCTTCTTCTGTCCGTCATCTATTTAAA 59.722 37.037 0.00 0.00 0.00 1.52
134 135 6.757010 GCTTCTTCTGTCCGTCATCTATTTAA 59.243 38.462 0.00 0.00 0.00 1.52
135 136 6.273825 GCTTCTTCTGTCCGTCATCTATTTA 58.726 40.000 0.00 0.00 0.00 1.40
136 137 5.112686 GCTTCTTCTGTCCGTCATCTATTT 58.887 41.667 0.00 0.00 0.00 1.40
137 138 4.442192 GGCTTCTTCTGTCCGTCATCTATT 60.442 45.833 0.00 0.00 0.00 1.73
138 139 3.068873 GGCTTCTTCTGTCCGTCATCTAT 59.931 47.826 0.00 0.00 0.00 1.98
139 140 2.427453 GGCTTCTTCTGTCCGTCATCTA 59.573 50.000 0.00 0.00 0.00 1.98
140 141 1.205893 GGCTTCTTCTGTCCGTCATCT 59.794 52.381 0.00 0.00 0.00 2.90
141 142 1.205893 AGGCTTCTTCTGTCCGTCATC 59.794 52.381 0.00 0.00 0.00 2.92
142 143 1.066573 CAGGCTTCTTCTGTCCGTCAT 60.067 52.381 0.00 0.00 0.00 3.06
143 144 0.318441 CAGGCTTCTTCTGTCCGTCA 59.682 55.000 0.00 0.00 0.00 4.35
144 145 1.016653 GCAGGCTTCTTCTGTCCGTC 61.017 60.000 0.00 0.00 34.89 4.79
145 146 1.004440 GCAGGCTTCTTCTGTCCGT 60.004 57.895 0.00 0.00 34.89 4.69
146 147 1.743252 GGCAGGCTTCTTCTGTCCG 60.743 63.158 0.00 0.00 34.89 4.79
147 148 0.905357 TAGGCAGGCTTCTTCTGTCC 59.095 55.000 0.00 0.00 37.55 4.02
148 149 1.827969 TCTAGGCAGGCTTCTTCTGTC 59.172 52.381 0.00 0.00 37.14 3.51
149 150 1.830477 CTCTAGGCAGGCTTCTTCTGT 59.170 52.381 0.00 0.00 34.89 3.41
150 151 1.830477 ACTCTAGGCAGGCTTCTTCTG 59.170 52.381 0.00 0.00 35.49 3.02
151 152 2.235898 CAACTCTAGGCAGGCTTCTTCT 59.764 50.000 0.00 0.00 0.00 2.85
152 153 2.626840 CAACTCTAGGCAGGCTTCTTC 58.373 52.381 0.00 0.00 0.00 2.87
153 154 1.339535 GCAACTCTAGGCAGGCTTCTT 60.340 52.381 0.00 0.00 0.00 2.52
154 155 0.251634 GCAACTCTAGGCAGGCTTCT 59.748 55.000 0.00 0.00 0.00 2.85
155 156 1.086634 CGCAACTCTAGGCAGGCTTC 61.087 60.000 0.00 0.00 0.00 3.86
156 157 1.078848 CGCAACTCTAGGCAGGCTT 60.079 57.895 0.00 0.00 0.00 4.35
157 158 1.831652 AACGCAACTCTAGGCAGGCT 61.832 55.000 0.38 0.38 0.00 4.58
158 159 0.955919 AAACGCAACTCTAGGCAGGC 60.956 55.000 0.00 0.00 0.00 4.85
159 160 2.380084 TAAACGCAACTCTAGGCAGG 57.620 50.000 0.00 0.00 0.00 4.85
160 161 3.485877 GCATTAAACGCAACTCTAGGCAG 60.486 47.826 0.00 0.00 0.00 4.85
161 162 2.418628 GCATTAAACGCAACTCTAGGCA 59.581 45.455 0.00 0.00 0.00 4.75
162 163 2.223272 GGCATTAAACGCAACTCTAGGC 60.223 50.000 3.02 0.00 0.00 3.93
163 164 3.063997 CAGGCATTAAACGCAACTCTAGG 59.936 47.826 3.02 0.00 0.00 3.02
164 165 3.485877 GCAGGCATTAAACGCAACTCTAG 60.486 47.826 3.02 0.00 0.00 2.43
165 166 2.418628 GCAGGCATTAAACGCAACTCTA 59.581 45.455 3.02 0.00 0.00 2.43
166 167 1.200020 GCAGGCATTAAACGCAACTCT 59.800 47.619 3.02 0.00 0.00 3.24
167 168 1.617740 GCAGGCATTAAACGCAACTC 58.382 50.000 3.02 0.00 0.00 3.01
168 169 0.243636 GGCAGGCATTAAACGCAACT 59.756 50.000 3.02 0.00 0.00 3.16
169 170 0.735978 GGGCAGGCATTAAACGCAAC 60.736 55.000 0.00 0.00 0.00 4.17
170 171 1.589113 GGGCAGGCATTAAACGCAA 59.411 52.632 0.00 0.00 0.00 4.85
171 172 2.695759 CGGGCAGGCATTAAACGCA 61.696 57.895 0.00 0.00 0.00 5.24
172 173 2.102161 CGGGCAGGCATTAAACGC 59.898 61.111 0.00 0.00 0.00 4.84
173 174 0.179174 GAACGGGCAGGCATTAAACG 60.179 55.000 0.00 0.00 0.00 3.60
174 175 0.179174 CGAACGGGCAGGCATTAAAC 60.179 55.000 0.00 0.00 0.00 2.01
175 176 0.606944 ACGAACGGGCAGGCATTAAA 60.607 50.000 0.00 0.00 0.00 1.52
176 177 1.003112 ACGAACGGGCAGGCATTAA 60.003 52.632 0.00 0.00 0.00 1.40
177 178 1.743623 CACGAACGGGCAGGCATTA 60.744 57.895 0.00 0.00 0.00 1.90
178 179 3.055719 CACGAACGGGCAGGCATT 61.056 61.111 0.00 0.00 0.00 3.56
179 180 3.545124 TTCACGAACGGGCAGGCAT 62.545 57.895 0.00 0.00 0.00 4.40
180 181 4.243008 TTCACGAACGGGCAGGCA 62.243 61.111 0.00 0.00 0.00 4.75
181 182 3.723348 GTTCACGAACGGGCAGGC 61.723 66.667 0.00 0.00 0.00 4.85
189 190 1.556484 CACACGTCCGTTCACGAAC 59.444 57.895 0.00 0.00 42.69 3.95
190 191 1.589461 CCACACGTCCGTTCACGAA 60.589 57.895 0.00 0.00 42.69 3.85
191 192 2.026445 CCACACGTCCGTTCACGA 59.974 61.111 0.00 0.00 42.69 4.35
192 193 1.879430 AACCACACGTCCGTTCACG 60.879 57.895 0.00 0.00 45.65 4.35
193 194 1.639534 CAACCACACGTCCGTTCAC 59.360 57.895 0.00 0.00 0.00 3.18
194 195 1.521906 CCAACCACACGTCCGTTCA 60.522 57.895 0.00 0.00 0.00 3.18
195 196 1.219522 CTCCAACCACACGTCCGTTC 61.220 60.000 0.00 0.00 0.00 3.95
196 197 1.227438 CTCCAACCACACGTCCGTT 60.227 57.895 0.00 0.00 0.00 4.44
197 198 1.108727 TACTCCAACCACACGTCCGT 61.109 55.000 0.00 0.00 0.00 4.69
198 199 0.032403 TTACTCCAACCACACGTCCG 59.968 55.000 0.00 0.00 0.00 4.79
199 200 1.069668 ACTTACTCCAACCACACGTCC 59.930 52.381 0.00 0.00 0.00 4.79
200 201 2.521105 ACTTACTCCAACCACACGTC 57.479 50.000 0.00 0.00 0.00 4.34
201 202 2.994186 AACTTACTCCAACCACACGT 57.006 45.000 0.00 0.00 0.00 4.49
202 203 3.463944 AGAAACTTACTCCAACCACACG 58.536 45.455 0.00 0.00 0.00 4.49
203 204 4.036380 CCAAGAAACTTACTCCAACCACAC 59.964 45.833 0.00 0.00 0.00 3.82
204 205 4.204012 CCAAGAAACTTACTCCAACCACA 58.796 43.478 0.00 0.00 0.00 4.17
205 206 4.204799 ACCAAGAAACTTACTCCAACCAC 58.795 43.478 0.00 0.00 0.00 4.16
206 207 4.513406 ACCAAGAAACTTACTCCAACCA 57.487 40.909 0.00 0.00 0.00 3.67
207 208 5.221185 GGAAACCAAGAAACTTACTCCAACC 60.221 44.000 0.00 0.00 0.00 3.77
208 209 5.358725 TGGAAACCAAGAAACTTACTCCAAC 59.641 40.000 0.00 0.00 0.00 3.77
209 210 5.358725 GTGGAAACCAAGAAACTTACTCCAA 59.641 40.000 0.00 0.00 34.18 3.53
210 211 4.885325 GTGGAAACCAAGAAACTTACTCCA 59.115 41.667 0.00 0.00 34.18 3.86
211 212 4.024302 CGTGGAAACCAAGAAACTTACTCC 60.024 45.833 0.00 0.00 35.05 3.85
212 213 4.573607 ACGTGGAAACCAAGAAACTTACTC 59.426 41.667 10.29 0.00 36.54 2.59
213 214 4.334481 CACGTGGAAACCAAGAAACTTACT 59.666 41.667 7.95 0.00 36.54 2.24
214 215 4.095334 ACACGTGGAAACCAAGAAACTTAC 59.905 41.667 21.57 0.00 36.54 2.34
215 216 4.095185 CACACGTGGAAACCAAGAAACTTA 59.905 41.667 21.57 0.00 36.54 2.24
216 217 3.086282 ACACGTGGAAACCAAGAAACTT 58.914 40.909 21.57 0.00 36.54 2.66
217 218 2.422127 CACACGTGGAAACCAAGAAACT 59.578 45.455 21.57 0.00 36.54 2.66
218 219 2.162809 ACACACGTGGAAACCAAGAAAC 59.837 45.455 21.57 0.00 36.54 2.78
219 220 2.438411 ACACACGTGGAAACCAAGAAA 58.562 42.857 21.57 0.00 36.54 2.52
220 221 2.116827 ACACACGTGGAAACCAAGAA 57.883 45.000 21.57 0.00 36.54 2.52
221 222 2.116827 AACACACGTGGAAACCAAGA 57.883 45.000 21.57 0.00 36.54 3.02
222 223 2.931512 AAACACACGTGGAAACCAAG 57.068 45.000 21.57 0.00 38.88 3.61
223 224 3.127203 CACTAAACACACGTGGAAACCAA 59.873 43.478 21.57 0.00 34.18 3.67
224 225 2.678836 CACTAAACACACGTGGAAACCA 59.321 45.455 21.57 0.00 34.19 3.67
225 226 3.328237 CACTAAACACACGTGGAAACC 57.672 47.619 21.57 0.00 34.19 3.27
231 232 0.865769 GCCTCCACTAAACACACGTG 59.134 55.000 15.48 15.48 0.00 4.49
232 233 0.599204 CGCCTCCACTAAACACACGT 60.599 55.000 0.00 0.00 0.00 4.49
233 234 0.599204 ACGCCTCCACTAAACACACG 60.599 55.000 0.00 0.00 0.00 4.49
234 235 1.589803 AACGCCTCCACTAAACACAC 58.410 50.000 0.00 0.00 0.00 3.82
235 236 1.944024 CAAACGCCTCCACTAAACACA 59.056 47.619 0.00 0.00 0.00 3.72
236 237 2.215196 TCAAACGCCTCCACTAAACAC 58.785 47.619 0.00 0.00 0.00 3.32
237 238 2.623878 TCAAACGCCTCCACTAAACA 57.376 45.000 0.00 0.00 0.00 2.83
238 239 3.252458 ACATTCAAACGCCTCCACTAAAC 59.748 43.478 0.00 0.00 0.00 2.01
239 240 3.252215 CACATTCAAACGCCTCCACTAAA 59.748 43.478 0.00 0.00 0.00 1.85
240 241 2.811431 CACATTCAAACGCCTCCACTAA 59.189 45.455 0.00 0.00 0.00 2.24
241 242 2.422597 CACATTCAAACGCCTCCACTA 58.577 47.619 0.00 0.00 0.00 2.74
242 243 1.238439 CACATTCAAACGCCTCCACT 58.762 50.000 0.00 0.00 0.00 4.00
243 244 0.240945 CCACATTCAAACGCCTCCAC 59.759 55.000 0.00 0.00 0.00 4.02
244 245 1.523154 GCCACATTCAAACGCCTCCA 61.523 55.000 0.00 0.00 0.00 3.86
245 246 1.212751 GCCACATTCAAACGCCTCC 59.787 57.895 0.00 0.00 0.00 4.30
246 247 1.154225 CGCCACATTCAAACGCCTC 60.154 57.895 0.00 0.00 0.00 4.70
247 248 1.599518 TCGCCACATTCAAACGCCT 60.600 52.632 0.00 0.00 0.00 5.52
248 249 1.442017 GTCGCCACATTCAAACGCC 60.442 57.895 0.00 0.00 0.00 5.68
249 250 1.442017 GGTCGCCACATTCAAACGC 60.442 57.895 0.00 0.00 0.00 4.84
250 251 1.209127 GGGTCGCCACATTCAAACG 59.791 57.895 0.00 0.00 0.00 3.60
251 252 0.958822 AAGGGTCGCCACATTCAAAC 59.041 50.000 0.00 0.00 0.00 2.93
252 253 0.958091 CAAGGGTCGCCACATTCAAA 59.042 50.000 0.00 0.00 0.00 2.69
253 254 0.179004 ACAAGGGTCGCCACATTCAA 60.179 50.000 0.00 0.00 0.00 2.69
254 255 0.179004 AACAAGGGTCGCCACATTCA 60.179 50.000 0.00 0.00 0.00 2.57
255 256 0.240945 CAACAAGGGTCGCCACATTC 59.759 55.000 0.00 0.00 0.00 2.67
256 257 1.178534 CCAACAAGGGTCGCCACATT 61.179 55.000 0.00 0.00 0.00 2.71
257 258 1.603455 CCAACAAGGGTCGCCACAT 60.603 57.895 0.00 0.00 0.00 3.21
258 259 2.063015 ATCCAACAAGGGTCGCCACA 62.063 55.000 0.00 0.00 38.24 4.17
259 260 1.303317 ATCCAACAAGGGTCGCCAC 60.303 57.895 0.00 0.00 38.24 5.01
260 261 1.002624 GATCCAACAAGGGTCGCCA 60.003 57.895 0.00 0.00 37.88 5.69
261 262 3.905249 GATCCAACAAGGGTCGCC 58.095 61.111 0.00 0.00 37.88 5.54
265 266 1.352352 CTGTCCAGATCCAACAAGGGT 59.648 52.381 0.00 0.00 38.24 4.34
266 267 1.952367 GCTGTCCAGATCCAACAAGGG 60.952 57.143 0.00 0.00 38.24 3.95
267 268 1.271543 TGCTGTCCAGATCCAACAAGG 60.272 52.381 0.00 0.00 39.47 3.61
268 269 2.189594 TGCTGTCCAGATCCAACAAG 57.810 50.000 0.00 0.00 0.00 3.16
269 270 2.821378 CAATGCTGTCCAGATCCAACAA 59.179 45.455 0.00 0.00 0.00 2.83
270 271 2.224843 ACAATGCTGTCCAGATCCAACA 60.225 45.455 0.00 0.00 0.00 3.33
271 272 2.421424 GACAATGCTGTCCAGATCCAAC 59.579 50.000 0.00 0.00 45.41 3.77
272 273 2.715046 GACAATGCTGTCCAGATCCAA 58.285 47.619 0.00 0.00 45.41 3.53
273 274 2.408271 GACAATGCTGTCCAGATCCA 57.592 50.000 0.00 0.00 45.41 3.41
286 287 0.030235 CCGCATGCATCCTGACAATG 59.970 55.000 19.57 0.00 0.00 2.82
287 288 1.105167 CCCGCATGCATCCTGACAAT 61.105 55.000 19.57 0.00 0.00 2.71
288 289 1.750018 CCCGCATGCATCCTGACAA 60.750 57.895 19.57 0.00 0.00 3.18
289 290 2.124612 CCCGCATGCATCCTGACA 60.125 61.111 19.57 0.00 0.00 3.58
290 291 1.890979 CTCCCGCATGCATCCTGAC 60.891 63.158 19.57 0.00 0.00 3.51
291 292 2.507452 CTCCCGCATGCATCCTGA 59.493 61.111 19.57 5.06 0.00 3.86
292 293 2.593725 CCTCCCGCATGCATCCTG 60.594 66.667 19.57 0.00 0.00 3.86
293 294 2.215451 AAACCTCCCGCATGCATCCT 62.215 55.000 19.57 0.00 0.00 3.24
294 295 1.754234 AAACCTCCCGCATGCATCC 60.754 57.895 19.57 0.00 0.00 3.51
295 296 1.031571 TCAAACCTCCCGCATGCATC 61.032 55.000 19.57 0.00 0.00 3.91
296 297 1.001020 TCAAACCTCCCGCATGCAT 60.001 52.632 19.57 0.00 0.00 3.96
297 298 1.675310 CTCAAACCTCCCGCATGCA 60.675 57.895 19.57 0.00 0.00 3.96
298 299 3.056313 GCTCAAACCTCCCGCATGC 62.056 63.158 7.91 7.91 0.00 4.06
299 300 2.409870 GGCTCAAACCTCCCGCATG 61.410 63.158 0.00 0.00 0.00 4.06
300 301 2.044946 GGCTCAAACCTCCCGCAT 60.045 61.111 0.00 0.00 0.00 4.73
301 302 4.344865 GGGCTCAAACCTCCCGCA 62.345 66.667 0.00 0.00 0.00 5.69
302 303 2.193087 TTAGGGCTCAAACCTCCCGC 62.193 60.000 0.00 0.00 44.70 6.13
303 304 0.326927 TTTAGGGCTCAAACCTCCCG 59.673 55.000 0.00 0.00 44.70 5.14
304 305 2.597578 TTTTAGGGCTCAAACCTCCC 57.402 50.000 0.00 0.00 39.54 4.30
305 306 2.826128 CCTTTTTAGGGCTCAAACCTCC 59.174 50.000 0.00 0.00 39.54 4.30
306 307 2.231478 GCCTTTTTAGGGCTCAAACCTC 59.769 50.000 0.00 0.00 45.57 3.85
307 308 2.248248 GCCTTTTTAGGGCTCAAACCT 58.752 47.619 0.00 0.00 45.57 3.50
308 309 2.743636 GCCTTTTTAGGGCTCAAACC 57.256 50.000 0.00 0.00 45.57 3.27
316 317 5.425217 ACCATTTTCCTATGCCTTTTTAGGG 59.575 40.000 0.00 0.00 36.44 3.53
317 318 6.070824 ACACCATTTTCCTATGCCTTTTTAGG 60.071 38.462 0.00 0.00 37.00 2.69
318 319 6.935167 ACACCATTTTCCTATGCCTTTTTAG 58.065 36.000 0.00 0.00 0.00 1.85
319 320 6.926630 ACACCATTTTCCTATGCCTTTTTA 57.073 33.333 0.00 0.00 0.00 1.52
320 321 5.823861 ACACCATTTTCCTATGCCTTTTT 57.176 34.783 0.00 0.00 0.00 1.94
321 322 6.016555 ACTACACCATTTTCCTATGCCTTTT 58.983 36.000 0.00 0.00 0.00 2.27
322 323 5.580022 ACTACACCATTTTCCTATGCCTTT 58.420 37.500 0.00 0.00 0.00 3.11
323 324 5.193099 ACTACACCATTTTCCTATGCCTT 57.807 39.130 0.00 0.00 0.00 4.35
324 325 4.862641 ACTACACCATTTTCCTATGCCT 57.137 40.909 0.00 0.00 0.00 4.75
325 326 5.914898 AAACTACACCATTTTCCTATGCC 57.085 39.130 0.00 0.00 0.00 4.40
326 327 7.094377 TGAGAAAACTACACCATTTTCCTATGC 60.094 37.037 5.97 0.00 43.03 3.14
327 328 8.335532 TGAGAAAACTACACCATTTTCCTATG 57.664 34.615 5.97 0.00 43.03 2.23
328 329 8.164070 ACTGAGAAAACTACACCATTTTCCTAT 58.836 33.333 5.97 0.00 43.03 2.57
329 330 7.514721 ACTGAGAAAACTACACCATTTTCCTA 58.485 34.615 5.97 0.00 43.03 2.94
330 331 6.365520 ACTGAGAAAACTACACCATTTTCCT 58.634 36.000 5.97 0.00 43.03 3.36
331 332 6.635030 ACTGAGAAAACTACACCATTTTCC 57.365 37.500 5.97 0.48 43.03 3.13
332 333 8.837389 ACTTACTGAGAAAACTACACCATTTTC 58.163 33.333 2.02 2.02 42.58 2.29
333 334 8.747538 ACTTACTGAGAAAACTACACCATTTT 57.252 30.769 0.00 0.00 0.00 1.82
334 335 8.747538 AACTTACTGAGAAAACTACACCATTT 57.252 30.769 0.00 0.00 0.00 2.32
335 336 8.211629 AGAACTTACTGAGAAAACTACACCATT 58.788 33.333 0.00 0.00 0.00 3.16
336 337 7.736893 AGAACTTACTGAGAAAACTACACCAT 58.263 34.615 0.00 0.00 0.00 3.55
337 338 7.120923 AGAACTTACTGAGAAAACTACACCA 57.879 36.000 0.00 0.00 0.00 4.17
338 339 6.362820 CGAGAACTTACTGAGAAAACTACACC 59.637 42.308 0.00 0.00 0.00 4.16
339 340 6.362820 CCGAGAACTTACTGAGAAAACTACAC 59.637 42.308 0.00 0.00 0.00 2.90
340 341 6.263842 TCCGAGAACTTACTGAGAAAACTACA 59.736 38.462 0.00 0.00 0.00 2.74
341 342 6.675987 TCCGAGAACTTACTGAGAAAACTAC 58.324 40.000 0.00 0.00 0.00 2.73
342 343 6.889301 TCCGAGAACTTACTGAGAAAACTA 57.111 37.500 0.00 0.00 0.00 2.24
343 344 5.786264 TCCGAGAACTTACTGAGAAAACT 57.214 39.130 0.00 0.00 0.00 2.66
344 345 5.751990 TGTTCCGAGAACTTACTGAGAAAAC 59.248 40.000 14.95 0.00 0.00 2.43
345 346 5.909477 TGTTCCGAGAACTTACTGAGAAAA 58.091 37.500 14.95 0.00 0.00 2.29
346 347 5.524971 TGTTCCGAGAACTTACTGAGAAA 57.475 39.130 14.95 0.00 0.00 2.52
347 348 5.524971 TTGTTCCGAGAACTTACTGAGAA 57.475 39.130 14.95 0.41 0.00 2.87
348 349 5.509163 CCTTTGTTCCGAGAACTTACTGAGA 60.509 44.000 14.95 0.00 0.00 3.27
349 350 4.686554 CCTTTGTTCCGAGAACTTACTGAG 59.313 45.833 14.95 6.53 0.00 3.35
350 351 4.100498 ACCTTTGTTCCGAGAACTTACTGA 59.900 41.667 14.95 0.00 0.00 3.41
351 352 4.377897 ACCTTTGTTCCGAGAACTTACTG 58.622 43.478 14.95 5.78 0.00 2.74
352 353 4.100498 TGACCTTTGTTCCGAGAACTTACT 59.900 41.667 14.95 0.00 0.00 2.24
353 354 4.210746 GTGACCTTTGTTCCGAGAACTTAC 59.789 45.833 14.95 2.16 0.00 2.34
354 355 4.141892 TGTGACCTTTGTTCCGAGAACTTA 60.142 41.667 14.95 4.20 0.00 2.24
355 356 3.203716 GTGACCTTTGTTCCGAGAACTT 58.796 45.455 14.95 0.00 0.00 2.66
356 357 2.169769 TGTGACCTTTGTTCCGAGAACT 59.830 45.455 14.95 0.00 0.00 3.01
363 364 2.350772 CGAATGCTGTGACCTTTGTTCC 60.351 50.000 0.00 0.00 0.00 3.62
371 372 0.037326 TGTCTCCGAATGCTGTGACC 60.037 55.000 0.00 0.00 0.00 4.02
372 373 1.067565 TCTGTCTCCGAATGCTGTGAC 60.068 52.381 0.00 0.00 0.00 3.67
378 379 1.142778 GCTCGTCTGTCTCCGAATGC 61.143 60.000 0.00 0.00 31.92 3.56
387 388 4.982999 TGTATTTACTCTGCTCGTCTGTC 58.017 43.478 0.00 0.00 0.00 3.51
389 390 4.987832 ACTGTATTTACTCTGCTCGTCTG 58.012 43.478 0.00 0.00 0.00 3.51
390 391 4.201832 CGACTGTATTTACTCTGCTCGTCT 60.202 45.833 0.00 0.00 0.00 4.18
391 392 4.029704 CGACTGTATTTACTCTGCTCGTC 58.970 47.826 0.00 0.00 0.00 4.20
392 393 3.688185 TCGACTGTATTTACTCTGCTCGT 59.312 43.478 0.00 0.00 0.00 4.18
393 394 4.274421 TCGACTGTATTTACTCTGCTCG 57.726 45.455 0.00 0.00 0.00 5.03
394 395 5.583495 ACATCGACTGTATTTACTCTGCTC 58.417 41.667 0.00 0.00 35.91 4.26
396 397 6.198591 GGTAACATCGACTGTATTTACTCTGC 59.801 42.308 0.00 0.00 36.98 4.26
397 398 7.255569 TGGTAACATCGACTGTATTTACTCTG 58.744 38.462 0.00 0.00 46.17 3.35
416 421 4.765339 AGTGGATTTGTAGGCTTTGGTAAC 59.235 41.667 0.00 0.00 0.00 2.50
422 427 4.469657 TGTTCAGTGGATTTGTAGGCTTT 58.530 39.130 0.00 0.00 0.00 3.51
427 432 4.275689 TGCAGTTGTTCAGTGGATTTGTAG 59.724 41.667 0.00 0.00 0.00 2.74
439 444 3.797451 TTGCTCAATTGCAGTTGTTCA 57.203 38.095 19.91 15.53 44.27 3.18
486 491 4.433615 TCTTTGTGATCTCTATTCGTGGC 58.566 43.478 0.00 0.00 0.00 5.01
496 501 5.146010 AGTTGTCTCCTCTTTGTGATCTC 57.854 43.478 0.00 0.00 0.00 2.75
561 567 1.523934 ACTAAAACGTGAACGGCGAAG 59.476 47.619 16.62 1.86 44.95 3.79
608 614 3.235195 GTTACTATCTGCCGTAGCGATG 58.765 50.000 0.00 0.00 44.31 3.84
611 617 2.604855 CCTGTTACTATCTGCCGTAGCG 60.605 54.545 0.00 0.00 44.31 4.26
614 620 1.684983 GGCCTGTTACTATCTGCCGTA 59.315 52.381 0.00 0.00 0.00 4.02
647 653 2.798689 CGCGTACTCTGCTGCCTA 59.201 61.111 0.00 0.00 0.00 3.93
656 662 1.298488 GTGAGCTAGGCGCGTACTC 60.298 63.158 21.92 21.92 45.59 2.59
657 663 2.772691 GGTGAGCTAGGCGCGTACT 61.773 63.158 8.43 9.48 45.59 2.73
677 903 1.445410 CACCGAAGCACCGATCGAA 60.445 57.895 18.66 0.00 41.43 3.71
720 946 1.227263 GGGATCCATCACGTCACCG 60.227 63.158 15.23 0.00 40.83 4.94
731 957 3.785859 GCGTCTGGCTGGGATCCA 61.786 66.667 15.23 0.00 39.11 3.41
784 1033 0.036010 CCGGATCAGTTTCAGCTGGT 60.036 55.000 15.13 0.00 37.12 4.00
831 1080 4.012374 CGAGCTCCGGGTTTATACCTATA 58.988 47.826 8.47 0.00 44.38 1.31
936 1194 2.534298 CGACTGTACAGAGATGCAAGG 58.466 52.381 29.30 0.00 0.00 3.61
943 1201 2.017782 GATGGAGCGACTGTACAGAGA 58.982 52.381 29.30 7.19 0.00 3.10
1069 1330 3.089838 CTGGATGGGGCAGTGGAA 58.910 61.111 0.00 0.00 0.00 3.53
1118 1388 1.345112 GGAGGAGGTTATTGGGAGGGA 60.345 57.143 0.00 0.00 0.00 4.20
1149 1419 3.328288 GAAGGGCGGCGCTGAAAAG 62.328 63.158 32.30 0.00 0.00 2.27
1165 1435 2.536761 ACACGAACGAAAGGATGGAA 57.463 45.000 0.14 0.00 0.00 3.53
1167 1437 2.921754 GAGTACACGAACGAAAGGATGG 59.078 50.000 0.14 0.00 0.00 3.51
1169 1439 3.757493 AGAGAGTACACGAACGAAAGGAT 59.243 43.478 0.14 0.00 0.00 3.24
1188 1458 5.177327 GGTAAGAACCGATCGACTAGTAGAG 59.823 48.000 18.66 0.00 35.62 2.43
1189 1459 5.053145 GGTAAGAACCGATCGACTAGTAGA 58.947 45.833 18.66 8.21 35.62 2.59
1210 1485 4.058732 TACGCGGCGTGACATGGT 62.059 61.111 35.53 10.65 41.39 3.55
1213 1488 2.506217 CAGTACGCGGCGTGACAT 60.506 61.111 35.53 16.67 41.39 3.06
1229 1505 0.618680 CATCACCCCCTCAGACCTCA 60.619 60.000 0.00 0.00 0.00 3.86
1232 1508 1.208165 AACCATCACCCCCTCAGACC 61.208 60.000 0.00 0.00 0.00 3.85
1234 1510 0.698238 CAAACCATCACCCCCTCAGA 59.302 55.000 0.00 0.00 0.00 3.27
1242 1518 2.654863 CCTGGATACCAAACCATCACC 58.345 52.381 0.00 0.00 35.54 4.02
1507 2082 3.282920 GGCCTTGGAGCATAGCGC 61.283 66.667 0.00 0.00 42.91 5.92
1508 2083 2.969238 CGGCCTTGGAGCATAGCG 60.969 66.667 0.00 0.00 0.00 4.26
1509 2084 2.592861 CCGGCCTTGGAGCATAGC 60.593 66.667 0.00 0.00 0.00 2.97
1510 2085 1.227674 GTCCGGCCTTGGAGCATAG 60.228 63.158 0.00 0.00 39.14 2.23
1511 2086 2.908015 GTCCGGCCTTGGAGCATA 59.092 61.111 0.00 0.00 39.14 3.14
1512 2087 4.473520 CGTCCGGCCTTGGAGCAT 62.474 66.667 0.00 0.00 39.14 3.79
1554 2134 1.002134 GCCAGGCCAGAAACAGCTA 60.002 57.895 5.01 0.00 0.00 3.32
1558 2138 2.594303 CACGCCAGGCCAGAAACA 60.594 61.111 5.01 0.00 0.00 2.83
1559 2139 2.594592 ACACGCCAGGCCAGAAAC 60.595 61.111 5.01 0.00 0.00 2.78
1569 2149 4.572305 ACACGTACGCACACGCCA 62.572 61.111 16.72 0.00 45.77 5.69
1570 2150 4.054455 CACACGTACGCACACGCC 62.054 66.667 16.72 0.00 45.77 5.68
1571 2151 2.862776 AACACACGTACGCACACGC 61.863 57.895 16.72 0.00 45.77 5.34
1573 2153 0.043652 GACAACACACGTACGCACAC 60.044 55.000 16.72 0.00 0.00 3.82
1581 2185 2.899976 TCACATTCAGACAACACACGT 58.100 42.857 0.00 0.00 0.00 4.49
1588 2192 4.576053 CCAACAGAGTTCACATTCAGACAA 59.424 41.667 0.00 0.00 0.00 3.18
1589 2193 4.129380 CCAACAGAGTTCACATTCAGACA 58.871 43.478 0.00 0.00 0.00 3.41
1590 2194 4.024556 CACCAACAGAGTTCACATTCAGAC 60.025 45.833 0.00 0.00 0.00 3.51
1591 2195 4.129380 CACCAACAGAGTTCACATTCAGA 58.871 43.478 0.00 0.00 0.00 3.27
1592 2196 3.879295 ACACCAACAGAGTTCACATTCAG 59.121 43.478 0.00 0.00 0.00 3.02
1593 2197 3.884895 ACACCAACAGAGTTCACATTCA 58.115 40.909 0.00 0.00 0.00 2.57
1594 2198 6.560253 AATACACCAACAGAGTTCACATTC 57.440 37.500 0.00 0.00 0.00 2.67
1596 2200 6.293407 CGAAAATACACCAACAGAGTTCACAT 60.293 38.462 0.00 0.00 0.00 3.21
1598 2202 5.440685 CGAAAATACACCAACAGAGTTCAC 58.559 41.667 0.00 0.00 0.00 3.18
1599 2203 4.513692 CCGAAAATACACCAACAGAGTTCA 59.486 41.667 0.00 0.00 0.00 3.18
1600 2204 4.612939 GCCGAAAATACACCAACAGAGTTC 60.613 45.833 0.00 0.00 0.00 3.01
1602 2206 2.812011 GCCGAAAATACACCAACAGAGT 59.188 45.455 0.00 0.00 0.00 3.24
1615 2281 5.163550 GCTTTAAGTAATCCCTGCCGAAAAT 60.164 40.000 0.00 0.00 0.00 1.82
1620 2289 2.614057 CAGCTTTAAGTAATCCCTGCCG 59.386 50.000 0.00 0.00 0.00 5.69
1634 2303 1.898154 GCGACCCTCCTCAGCTTTA 59.102 57.895 0.00 0.00 0.00 1.85
1639 2308 3.062466 TCACGCGACCCTCCTCAG 61.062 66.667 15.93 0.00 0.00 3.35
1682 2351 1.635663 CGGCAAACCTGATCGTGGAC 61.636 60.000 10.99 0.00 0.00 4.02
1706 2480 1.009900 GTCGGACGCCTCTATCACG 60.010 63.158 0.00 0.00 0.00 4.35
1728 2502 1.868251 CGTCGCTGAAGTAGACCGC 60.868 63.158 3.63 0.00 0.00 5.68
1934 2708 0.389948 GTGGAGCTTGGTGAGGTACG 60.390 60.000 0.00 0.00 39.70 3.67
1936 2710 1.541310 CGGTGGAGCTTGGTGAGGTA 61.541 60.000 0.00 0.00 35.91 3.08
1941 2715 3.357079 GTGCGGTGGAGCTTGGTG 61.357 66.667 0.00 0.00 38.13 4.17
1942 2716 3.196207 ATGTGCGGTGGAGCTTGGT 62.196 57.895 0.00 0.00 38.13 3.67
1943 2717 2.360350 ATGTGCGGTGGAGCTTGG 60.360 61.111 0.00 0.00 38.13 3.61
1966 2740 1.590259 GAGAGATCAACGGCGAGCC 60.590 63.158 16.62 3.59 0.00 4.70
1967 2741 0.663688 TAGAGAGATCAACGGCGAGC 59.336 55.000 16.62 0.00 0.00 5.03
1968 2742 1.944024 AGTAGAGAGATCAACGGCGAG 59.056 52.381 16.62 5.73 0.00 5.03
1969 2743 1.671328 CAGTAGAGAGATCAACGGCGA 59.329 52.381 16.62 0.00 0.00 5.54
1970 2744 1.671328 TCAGTAGAGAGATCAACGGCG 59.329 52.381 4.80 4.80 0.00 6.46
1971 2745 2.223618 GGTCAGTAGAGAGATCAACGGC 60.224 54.545 0.00 0.00 0.00 5.68
1972 2746 3.017442 TGGTCAGTAGAGAGATCAACGG 58.983 50.000 0.00 0.00 0.00 4.44
1973 2747 4.336713 TCATGGTCAGTAGAGAGATCAACG 59.663 45.833 0.00 0.00 0.00 4.10
1974 2748 5.592282 TCTCATGGTCAGTAGAGAGATCAAC 59.408 44.000 0.00 0.00 32.57 3.18
1975 2749 5.760131 TCTCATGGTCAGTAGAGAGATCAA 58.240 41.667 0.00 0.00 32.57 2.57
1976 2750 5.379706 TCTCATGGTCAGTAGAGAGATCA 57.620 43.478 0.00 0.00 32.57 2.92
1977 2751 6.899393 AATCTCATGGTCAGTAGAGAGATC 57.101 41.667 0.00 0.00 40.76 2.75
1978 2752 7.499292 CAAAATCTCATGGTCAGTAGAGAGAT 58.501 38.462 0.00 0.00 42.74 2.75
1981 2755 5.423015 GCAAAATCTCATGGTCAGTAGAGA 58.577 41.667 0.00 0.00 40.96 3.10
1982 2756 4.269603 CGCAAAATCTCATGGTCAGTAGAG 59.730 45.833 0.00 0.00 0.00 2.43
1986 2760 2.744202 GTCGCAAAATCTCATGGTCAGT 59.256 45.455 0.00 0.00 0.00 3.41
1987 2761 2.222886 CGTCGCAAAATCTCATGGTCAG 60.223 50.000 0.00 0.00 0.00 3.51
2004 2804 1.959899 GCATCTGAACCTGCACGTCG 61.960 60.000 0.00 0.00 38.28 5.12
2007 2807 1.364626 GGAGCATCTGAACCTGCACG 61.365 60.000 4.72 0.00 40.88 5.34
2100 2900 1.871408 CGTCTGGTGCTAGATGGATGC 60.871 57.143 0.00 0.00 31.50 3.91
2175 2975 0.461961 CCTACTAGCTGGTGAGGCAC 59.538 60.000 13.76 0.00 0.00 5.01
2346 3175 2.044946 GCCACCATCGCTCCCTTT 60.045 61.111 0.00 0.00 0.00 3.11
2641 3484 2.289565 GACCATCCGAATTCAGGAACC 58.710 52.381 18.55 8.16 41.69 3.62
2642 3485 2.985896 TGACCATCCGAATTCAGGAAC 58.014 47.619 18.55 12.47 41.69 3.62
2652 3495 4.503817 GGAGATGATGAAATGACCATCCGA 60.504 45.833 0.00 0.00 39.60 4.55
2653 3496 3.750130 GGAGATGATGAAATGACCATCCG 59.250 47.826 0.00 0.00 39.60 4.18
2661 3504 4.638865 TGTCAGCAAGGAGATGATGAAATG 59.361 41.667 0.00 0.00 46.19 2.32
2663 3506 4.290711 TGTCAGCAAGGAGATGATGAAA 57.709 40.909 0.00 0.00 46.19 2.69
2670 3513 3.094572 CCCAATTTGTCAGCAAGGAGAT 58.905 45.455 0.00 0.00 35.82 2.75
2739 3582 1.934220 CTTCAGTCCTCGCGCCACTA 61.934 60.000 0.00 0.00 0.00 2.74
2812 3689 5.827797 TCCTGAAATAATTAAGCGGCAGATT 59.172 36.000 1.45 1.86 0.00 2.40
3115 4430 6.067039 GCCTTACGAAACTGTAAAAACTACG 58.933 40.000 0.00 0.00 34.15 3.51
3116 4431 6.203530 AGGCCTTACGAAACTGTAAAAACTAC 59.796 38.462 0.00 0.00 34.15 2.73
3117 4432 6.290605 AGGCCTTACGAAACTGTAAAAACTA 58.709 36.000 0.00 0.00 34.15 2.24
3118 4433 5.128205 AGGCCTTACGAAACTGTAAAAACT 58.872 37.500 0.00 0.00 34.15 2.66
3304 4685 2.240279 ACTACGCTCACTCAGGTTTCT 58.760 47.619 0.00 0.00 0.00 2.52
3305 4686 2.726832 ACTACGCTCACTCAGGTTTC 57.273 50.000 0.00 0.00 0.00 2.78
3364 4908 3.825143 TTTCCCCGTAGTTATACCTGC 57.175 47.619 0.00 0.00 0.00 4.85
3365 4909 5.349061 ACTTTTCCCCGTAGTTATACCTG 57.651 43.478 0.00 0.00 0.00 4.00
3366 4910 5.249163 ACAACTTTTCCCCGTAGTTATACCT 59.751 40.000 0.00 0.00 31.30 3.08
3367 4911 5.491070 ACAACTTTTCCCCGTAGTTATACC 58.509 41.667 0.00 0.00 31.30 2.73
3369 4913 6.357579 TGACAACTTTTCCCCGTAGTTATA 57.642 37.500 0.00 0.00 31.30 0.98
3389 4935 4.707448 TCACTATTTCTCCTGAGTCCTGAC 59.293 45.833 0.00 0.00 0.00 3.51
3391 4937 4.709397 AGTCACTATTTCTCCTGAGTCCTG 59.291 45.833 0.00 0.00 0.00 3.86
3392 4938 4.941713 AGTCACTATTTCTCCTGAGTCCT 58.058 43.478 0.00 0.00 0.00 3.85
3393 4939 4.707448 TGAGTCACTATTTCTCCTGAGTCC 59.293 45.833 0.00 0.00 33.74 3.85
3395 4941 6.438741 TCAATGAGTCACTATTTCTCCTGAGT 59.561 38.462 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.