Multiple sequence alignment - TraesCS2B01G196500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G196500 chr2B 100.000 3733 0 0 1 3733 174594762 174591030 0.000000e+00 6894.0
1 TraesCS2B01G196500 chr2B 93.074 231 16 0 1315 1545 174663950 174663720 4.620000e-89 339.0
2 TraesCS2B01G196500 chr2B 89.925 268 18 6 299 558 69039329 69039595 1.660000e-88 337.0
3 TraesCS2B01G196500 chr2B 92.925 212 14 1 637 848 627773016 627772806 1.300000e-79 307.0
4 TraesCS2B01G196500 chr2D 88.091 2032 127 43 848 2820 121061831 121059856 0.000000e+00 2305.0
5 TraesCS2B01G196500 chr2D 81.818 1056 146 31 1623 2642 121355464 121354419 0.000000e+00 845.0
6 TraesCS2B01G196500 chr2D 87.443 661 38 20 2775 3401 121059839 121059190 0.000000e+00 719.0
7 TraesCS2B01G196500 chr2D 84.375 480 50 17 1078 1546 121356109 121355644 7.350000e-122 448.0
8 TraesCS2B01G196500 chr2D 88.809 277 20 7 292 558 581406595 581406870 2.780000e-86 329.0
9 TraesCS2B01G196500 chr2D 89.513 267 15 8 1 255 121062133 121061868 3.600000e-85 326.0
10 TraesCS2B01G196500 chr2D 90.728 151 10 3 3581 3731 121059148 121059002 8.180000e-47 198.0
11 TraesCS2B01G196500 chr2A 86.898 1992 114 58 852 2771 125253292 125251376 0.000000e+00 2097.0
12 TraesCS2B01G196500 chr2A 88.501 974 52 28 2771 3715 125251099 125250157 0.000000e+00 1123.0
13 TraesCS2B01G196500 chr2A 81.165 1030 155 31 1641 2650 125459010 125458000 0.000000e+00 791.0
14 TraesCS2B01G196500 chr2A 93.534 232 15 0 1315 1546 125459448 125459217 2.760000e-91 346.0
15 TraesCS2B01G196500 chr2A 93.578 218 11 3 636 852 710461218 710461433 4.650000e-84 322.0
16 TraesCS2B01G196500 chr5D 90.672 268 16 5 299 558 336960517 336960783 7.670000e-92 348.0
17 TraesCS2B01G196500 chr5D 89.179 268 20 5 299 558 217185491 217185757 3.600000e-85 326.0
18 TraesCS2B01G196500 chr3B 90.299 268 17 5 299 558 382660316 382660582 3.570000e-90 342.0
19 TraesCS2B01G196500 chr3B 92.891 211 14 1 637 847 183471221 183471430 4.680000e-79 305.0
20 TraesCS2B01G196500 chr7B 89.338 272 18 6 299 561 203310789 203311058 7.730000e-87 331.0
21 TraesCS2B01G196500 chr7B 92.891 211 14 1 637 847 91506444 91506235 4.680000e-79 305.0
22 TraesCS2B01G196500 chr7D 89.179 268 20 5 299 558 387603762 387604028 3.600000e-85 326.0
23 TraesCS2B01G196500 chr7D 93.333 60 2 1 251 310 391747862 391747805 1.850000e-13 87.9
24 TraesCS2B01G196500 chr7D 95.918 49 2 0 251 299 387603686 387603734 3.090000e-11 80.5
25 TraesCS2B01G196500 chr6D 89.179 268 20 5 299 558 459199240 459199506 3.600000e-85 326.0
26 TraesCS2B01G196500 chr5A 88.686 274 20 6 299 564 208745849 208745579 1.290000e-84 324.0
27 TraesCS2B01G196500 chr6B 92.488 213 16 0 637 849 8734816 8734604 4.680000e-79 305.0
28 TraesCS2B01G196500 chr6B 92.019 213 17 0 637 849 8671126 8670914 2.180000e-77 300.0
29 TraesCS2B01G196500 chr6B 92.019 213 17 0 637 849 8700560 8700348 2.180000e-77 300.0
30 TraesCS2B01G196500 chrUn 92.019 213 17 0 637 849 200670027 200670239 2.180000e-77 300.0
31 TraesCS2B01G196500 chrUn 92.019 213 17 0 637 849 413842420 413842632 2.180000e-77 300.0
32 TraesCS2B01G196500 chr4B 98.000 50 1 0 250 299 652268242 652268291 1.850000e-13 87.9
33 TraesCS2B01G196500 chr4B 93.103 58 2 1 252 309 4138059 4138004 2.390000e-12 84.2
34 TraesCS2B01G196500 chr4D 97.959 49 1 0 251 299 289883619 289883667 6.640000e-13 86.1
35 TraesCS2B01G196500 chr4D 93.220 59 2 1 251 309 462994673 462994617 6.640000e-13 86.1
36 TraesCS2B01G196500 chr4D 95.918 49 2 0 251 299 285796275 285796323 3.090000e-11 80.5
37 TraesCS2B01G196500 chr4A 97.959 49 1 0 251 299 134178712 134178760 6.640000e-13 86.1
38 TraesCS2B01G196500 chr3A 97.959 49 1 0 251 299 199719295 199719343 6.640000e-13 86.1
39 TraesCS2B01G196500 chr3A 93.220 59 2 1 251 309 429149192 429149136 6.640000e-13 86.1
40 TraesCS2B01G196500 chr3A 93.220 59 2 1 251 309 435916833 435916777 6.640000e-13 86.1
41 TraesCS2B01G196500 chr6A 100.000 45 0 0 255 299 248791852 248791896 2.390000e-12 84.2
42 TraesCS2B01G196500 chr3D 94.545 55 1 1 255 309 118003653 118003601 2.390000e-12 84.2
43 TraesCS2B01G196500 chr1A 94.545 55 1 1 255 309 482658127 482658075 2.390000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G196500 chr2B 174591030 174594762 3732 True 6894.0 6894 100.00000 1 3733 1 chr2B.!!$R1 3732
1 TraesCS2B01G196500 chr2D 121059002 121062133 3131 True 887.0 2305 88.94375 1 3731 4 chr2D.!!$R1 3730
2 TraesCS2B01G196500 chr2D 121354419 121356109 1690 True 646.5 845 83.09650 1078 2642 2 chr2D.!!$R2 1564
3 TraesCS2B01G196500 chr2A 125250157 125253292 3135 True 1610.0 2097 87.69950 852 3715 2 chr2A.!!$R1 2863
4 TraesCS2B01G196500 chr2A 125458000 125459448 1448 True 568.5 791 87.34950 1315 2650 2 chr2A.!!$R2 1335

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 422 0.032540 AACCGAGTTTACGACGCCTT 59.967 50.0 0.00 0.0 35.09 4.35 F
422 435 0.036010 ACGCCTTCAGATTGTCCAGG 60.036 55.0 0.00 0.0 0.00 4.45 F
687 700 0.036164 CCATCCGTGTTCCCACTTCA 59.964 55.0 0.00 0.0 39.55 3.02 F
698 711 0.179073 CCCACTTCATCCTACGGCTG 60.179 60.0 0.00 0.0 0.00 4.85 F
1759 1937 0.305313 GAAAACTGCAACGTGCCGTA 59.695 50.0 7.27 0.0 44.23 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 1636 0.254178 AATGATTCTGTCCTGCGGCT 59.746 50.000 0.00 0.0 0.00 5.52 R
1704 1866 0.682852 AACCGAACCTGATCGTGGAA 59.317 50.000 10.99 0.0 41.16 3.53 R
2655 2880 0.036671 AACTAGGAAGAAACCGCCGG 60.037 55.000 0.00 0.0 34.73 6.13 R
2685 2910 4.617959 GATGGCAATGGATGATGAAACTG 58.382 43.478 0.00 0.0 0.00 3.16 R
2860 3432 0.947244 AGCCACAGAAGCTCAAAACG 59.053 50.000 0.00 0.0 34.91 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 0.250252 TGCAACGAATCTGCACCTCA 60.250 50.000 0.00 0.00 44.67 3.86
115 116 1.089920 GCAACGAATCTGCACCTCAT 58.910 50.000 0.00 0.00 39.69 2.90
120 121 2.290260 ACGAATCTGCACCTCATTCCAA 60.290 45.455 0.00 0.00 0.00 3.53
126 127 1.355381 TGCACCTCATTCCAACTCCAT 59.645 47.619 0.00 0.00 0.00 3.41
180 181 0.460311 GCCTAGCTAGCTTCCGAACA 59.540 55.000 24.88 1.10 0.00 3.18
183 184 3.126831 CCTAGCTAGCTTCCGAACATTG 58.873 50.000 24.88 0.00 0.00 2.82
184 185 2.029838 AGCTAGCTTCCGAACATTGG 57.970 50.000 12.68 0.00 0.00 3.16
186 187 1.666189 GCTAGCTTCCGAACATTGGAC 59.334 52.381 7.70 0.00 34.56 4.02
187 188 2.280628 CTAGCTTCCGAACATTGGACC 58.719 52.381 0.00 0.00 34.56 4.46
188 189 0.322546 AGCTTCCGAACATTGGACCC 60.323 55.000 0.00 0.00 34.56 4.46
189 190 0.322546 GCTTCCGAACATTGGACCCT 60.323 55.000 0.00 0.00 34.56 4.34
193 206 1.279846 TCCGAACATTGGACCCTAACC 59.720 52.381 0.00 0.00 0.00 2.85
195 208 1.680860 CGAACATTGGACCCTAACCCC 60.681 57.143 0.00 0.00 0.00 4.95
202 215 0.622446 GGACCCTAACCCCCAGCTAA 60.622 60.000 0.00 0.00 0.00 3.09
225 238 3.047280 CAGCAACGCCCGTGCTAA 61.047 61.111 14.10 0.00 37.11 3.09
255 268 3.476646 CAGCAGCGACGCACTGAG 61.477 66.667 28.69 12.77 37.23 3.35
256 269 3.674523 AGCAGCGACGCACTGAGA 61.675 61.111 23.70 0.00 37.32 3.27
257 270 3.177920 GCAGCGACGCACTGAGAG 61.178 66.667 23.70 3.62 37.32 3.20
258 271 3.177920 CAGCGACGCACTGAGAGC 61.178 66.667 23.70 0.00 37.32 4.09
259 272 3.674523 AGCGACGCACTGAGAGCA 61.675 61.111 23.70 0.00 0.00 4.26
260 273 2.507992 GCGACGCACTGAGAGCAT 60.508 61.111 16.42 0.00 0.00 3.79
261 274 2.512301 GCGACGCACTGAGAGCATC 61.512 63.158 16.42 0.00 0.00 3.91
276 289 2.225963 GAGCATCTCCAATAGCATGTGC 59.774 50.000 0.00 0.00 42.49 4.57
277 290 1.951602 GCATCTCCAATAGCATGTGCA 59.048 47.619 7.83 0.00 45.16 4.57
278 291 2.557056 GCATCTCCAATAGCATGTGCAT 59.443 45.455 7.83 0.00 45.16 3.96
279 292 3.754850 GCATCTCCAATAGCATGTGCATA 59.245 43.478 7.83 0.00 45.16 3.14
280 293 4.398358 GCATCTCCAATAGCATGTGCATAT 59.602 41.667 7.83 0.00 45.16 1.78
281 294 5.105877 GCATCTCCAATAGCATGTGCATATT 60.106 40.000 7.83 5.97 45.16 1.28
282 295 6.571731 GCATCTCCAATAGCATGTGCATATTT 60.572 38.462 7.83 0.00 45.16 1.40
283 296 6.321848 TCTCCAATAGCATGTGCATATTTG 57.678 37.500 7.83 0.00 45.16 2.32
284 297 5.242171 TCTCCAATAGCATGTGCATATTTGG 59.758 40.000 15.04 15.04 45.16 3.28
285 298 5.139001 TCCAATAGCATGTGCATATTTGGA 58.861 37.500 18.25 18.25 45.16 3.53
286 299 5.776208 TCCAATAGCATGTGCATATTTGGAT 59.224 36.000 18.25 0.35 45.16 3.41
287 300 5.867174 CCAATAGCATGTGCATATTTGGATG 59.133 40.000 15.79 4.25 45.16 3.51
288 301 6.452242 CAATAGCATGTGCATATTTGGATGT 58.548 36.000 7.83 0.00 45.16 3.06
289 302 4.579454 AGCATGTGCATATTTGGATGTC 57.421 40.909 7.83 0.00 45.16 3.06
290 303 4.212716 AGCATGTGCATATTTGGATGTCT 58.787 39.130 7.83 0.00 45.16 3.41
291 304 5.379187 AGCATGTGCATATTTGGATGTCTA 58.621 37.500 7.83 0.00 45.16 2.59
292 305 6.008331 AGCATGTGCATATTTGGATGTCTAT 58.992 36.000 7.83 0.00 45.16 1.98
293 306 7.170277 AGCATGTGCATATTTGGATGTCTATA 58.830 34.615 7.83 0.00 45.16 1.31
294 307 7.832685 AGCATGTGCATATTTGGATGTCTATAT 59.167 33.333 7.83 0.00 45.16 0.86
295 308 9.112725 GCATGTGCATATTTGGATGTCTATATA 57.887 33.333 0.00 0.00 41.59 0.86
323 336 9.678941 TCTCATATATACGTTCAGTTTCACATC 57.321 33.333 0.00 0.00 0.00 3.06
324 337 9.463443 CTCATATATACGTTCAGTTTCACATCA 57.537 33.333 0.00 0.00 0.00 3.07
325 338 9.463443 TCATATATACGTTCAGTTTCACATCAG 57.537 33.333 0.00 0.00 0.00 2.90
326 339 9.463443 CATATATACGTTCAGTTTCACATCAGA 57.537 33.333 0.00 0.00 0.00 3.27
328 341 4.795970 ACGTTCAGTTTCACATCAGAAC 57.204 40.909 0.00 0.00 33.82 3.01
330 343 4.795970 GTTCAGTTTCACATCAGAACGT 57.204 40.909 0.00 0.00 0.00 3.99
331 344 4.762809 GTTCAGTTTCACATCAGAACGTC 58.237 43.478 0.00 0.00 0.00 4.34
332 345 4.322080 TCAGTTTCACATCAGAACGTCT 57.678 40.909 0.00 0.00 0.00 4.18
333 346 5.447624 TCAGTTTCACATCAGAACGTCTA 57.552 39.130 0.00 0.00 0.00 2.59
334 347 6.025749 TCAGTTTCACATCAGAACGTCTAT 57.974 37.500 0.00 0.00 0.00 1.98
335 348 7.153217 TCAGTTTCACATCAGAACGTCTATA 57.847 36.000 0.00 0.00 0.00 1.31
336 349 7.772166 TCAGTTTCACATCAGAACGTCTATAT 58.228 34.615 0.00 0.00 0.00 0.86
337 350 8.899771 TCAGTTTCACATCAGAACGTCTATATA 58.100 33.333 0.00 0.00 0.00 0.86
338 351 8.959058 CAGTTTCACATCAGAACGTCTATATAC 58.041 37.037 0.00 0.00 0.00 1.47
339 352 8.683615 AGTTTCACATCAGAACGTCTATATACA 58.316 33.333 0.00 0.00 0.00 2.29
340 353 8.959058 GTTTCACATCAGAACGTCTATATACAG 58.041 37.037 0.00 0.00 0.00 2.74
341 354 7.203255 TCACATCAGAACGTCTATATACAGG 57.797 40.000 0.00 0.00 0.00 4.00
342 355 6.206829 TCACATCAGAACGTCTATATACAGGG 59.793 42.308 0.00 0.00 0.00 4.45
343 356 6.206829 CACATCAGAACGTCTATATACAGGGA 59.793 42.308 0.00 0.00 0.00 4.20
344 357 6.207025 ACATCAGAACGTCTATATACAGGGAC 59.793 42.308 0.00 0.00 0.00 4.46
345 358 5.068636 TCAGAACGTCTATATACAGGGACC 58.931 45.833 0.00 0.00 0.00 4.46
346 359 4.825634 CAGAACGTCTATATACAGGGACCA 59.174 45.833 0.00 0.00 0.00 4.02
347 360 5.477291 CAGAACGTCTATATACAGGGACCAT 59.523 44.000 0.00 0.00 0.00 3.55
348 361 5.477291 AGAACGTCTATATACAGGGACCATG 59.523 44.000 4.17 4.17 0.00 3.66
349 362 4.994282 ACGTCTATATACAGGGACCATGA 58.006 43.478 14.23 0.00 0.00 3.07
350 363 4.765856 ACGTCTATATACAGGGACCATGAC 59.234 45.833 14.23 0.00 0.00 3.06
351 364 4.765339 CGTCTATATACAGGGACCATGACA 59.235 45.833 14.23 0.03 0.00 3.58
352 365 5.106118 CGTCTATATACAGGGACCATGACAG 60.106 48.000 14.23 2.45 0.00 3.51
353 366 5.186021 GTCTATATACAGGGACCATGACAGG 59.814 48.000 14.23 0.00 0.00 4.00
354 367 2.270434 ATACAGGGACCATGACAGGT 57.730 50.000 14.23 0.00 46.82 4.00
355 368 1.275666 TACAGGGACCATGACAGGTG 58.724 55.000 14.23 0.00 43.38 4.00
356 369 1.300963 CAGGGACCATGACAGGTGG 59.699 63.158 0.00 0.00 43.38 4.61
357 370 1.925455 AGGGACCATGACAGGTGGG 60.925 63.158 0.00 0.00 43.38 4.61
358 371 2.044946 GGACCATGACAGGTGGGC 60.045 66.667 0.00 0.00 43.38 5.36
359 372 2.044946 GACCATGACAGGTGGGCC 60.045 66.667 0.00 0.00 43.38 5.80
360 373 2.858476 ACCATGACAGGTGGGCCA 60.858 61.111 0.00 0.00 41.30 5.36
361 374 2.215451 GACCATGACAGGTGGGCCAT 62.215 60.000 10.70 0.00 43.38 4.40
362 375 1.454479 CCATGACAGGTGGGCCATC 60.454 63.158 10.70 10.00 37.19 3.51
363 376 1.820906 CATGACAGGTGGGCCATCG 60.821 63.158 10.70 8.41 37.19 3.84
364 377 3.704231 ATGACAGGTGGGCCATCGC 62.704 63.158 10.70 4.81 37.19 4.58
365 378 4.101448 GACAGGTGGGCCATCGCT 62.101 66.667 10.70 0.00 37.19 4.93
366 379 4.415150 ACAGGTGGGCCATCGCTG 62.415 66.667 10.70 7.05 37.19 5.18
367 380 4.415150 CAGGTGGGCCATCGCTGT 62.415 66.667 10.70 0.00 37.19 4.40
368 381 4.415150 AGGTGGGCCATCGCTGTG 62.415 66.667 10.70 0.00 37.19 3.66
369 382 4.408821 GGTGGGCCATCGCTGTGA 62.409 66.667 10.70 0.00 34.44 3.58
370 383 2.821366 GTGGGCCATCGCTGTGAG 60.821 66.667 10.70 0.00 34.44 3.51
371 384 3.002583 TGGGCCATCGCTGTGAGA 61.003 61.111 0.00 0.00 34.44 3.27
372 385 2.202987 GGGCCATCGCTGTGAGAG 60.203 66.667 4.39 0.00 34.44 3.20
373 386 2.725312 GGGCCATCGCTGTGAGAGA 61.725 63.158 4.39 0.00 34.44 3.10
374 387 1.219124 GGCCATCGCTGTGAGAGAA 59.781 57.895 0.00 0.00 34.44 2.87
375 388 0.391661 GGCCATCGCTGTGAGAGAAA 60.392 55.000 0.00 0.00 34.44 2.52
376 389 1.005340 GCCATCGCTGTGAGAGAAAG 58.995 55.000 0.00 0.00 0.00 2.62
377 390 1.404717 GCCATCGCTGTGAGAGAAAGA 60.405 52.381 0.00 0.00 0.00 2.52
378 391 2.932622 GCCATCGCTGTGAGAGAAAGAA 60.933 50.000 0.00 0.00 0.00 2.52
379 392 3.329386 CCATCGCTGTGAGAGAAAGAAA 58.671 45.455 0.00 0.00 0.00 2.52
380 393 3.937706 CCATCGCTGTGAGAGAAAGAAAT 59.062 43.478 0.00 0.00 0.00 2.17
381 394 4.033817 CCATCGCTGTGAGAGAAAGAAATC 59.966 45.833 0.00 0.00 0.00 2.17
382 395 4.257267 TCGCTGTGAGAGAAAGAAATCA 57.743 40.909 0.00 0.00 0.00 2.57
383 396 4.825422 TCGCTGTGAGAGAAAGAAATCAT 58.175 39.130 0.00 0.00 0.00 2.45
384 397 4.628766 TCGCTGTGAGAGAAAGAAATCATG 59.371 41.667 0.00 0.00 0.00 3.07
385 398 4.628766 CGCTGTGAGAGAAAGAAATCATGA 59.371 41.667 0.00 0.00 0.00 3.07
386 399 5.445673 CGCTGTGAGAGAAAGAAATCATGAC 60.446 44.000 0.00 0.00 0.00 3.06
387 400 5.642919 GCTGTGAGAGAAAGAAATCATGACT 59.357 40.000 0.00 0.00 0.00 3.41
388 401 6.815641 GCTGTGAGAGAAAGAAATCATGACTA 59.184 38.462 0.00 0.00 0.00 2.59
389 402 7.201513 GCTGTGAGAGAAAGAAATCATGACTAC 60.202 40.741 0.00 0.00 0.00 2.73
390 403 7.670364 TGTGAGAGAAAGAAATCATGACTACA 58.330 34.615 0.00 0.00 0.00 2.74
391 404 8.150296 TGTGAGAGAAAGAAATCATGACTACAA 58.850 33.333 0.00 0.00 0.00 2.41
392 405 8.439286 GTGAGAGAAAGAAATCATGACTACAAC 58.561 37.037 0.00 0.00 0.00 3.32
393 406 7.604164 TGAGAGAAAGAAATCATGACTACAACC 59.396 37.037 0.00 0.00 0.00 3.77
394 407 6.591834 AGAGAAAGAAATCATGACTACAACCG 59.408 38.462 0.00 0.00 0.00 4.44
395 408 6.464222 AGAAAGAAATCATGACTACAACCGA 58.536 36.000 0.00 0.00 0.00 4.69
396 409 6.591834 AGAAAGAAATCATGACTACAACCGAG 59.408 38.462 0.00 0.00 0.00 4.63
397 410 5.407407 AGAAATCATGACTACAACCGAGT 57.593 39.130 0.00 0.00 0.00 4.18
398 411 5.794894 AGAAATCATGACTACAACCGAGTT 58.205 37.500 0.00 0.00 0.00 3.01
399 412 6.231211 AGAAATCATGACTACAACCGAGTTT 58.769 36.000 0.00 0.00 0.00 2.66
400 413 7.383687 AGAAATCATGACTACAACCGAGTTTA 58.616 34.615 0.00 0.00 0.00 2.01
401 414 6.963049 AATCATGACTACAACCGAGTTTAC 57.037 37.500 0.00 0.00 0.00 2.01
402 415 4.478699 TCATGACTACAACCGAGTTTACG 58.521 43.478 0.00 0.00 0.00 3.18
403 416 4.216042 TCATGACTACAACCGAGTTTACGA 59.784 41.667 0.00 0.00 35.09 3.43
404 417 3.888934 TGACTACAACCGAGTTTACGAC 58.111 45.455 0.00 0.00 35.09 4.34
405 418 2.904932 GACTACAACCGAGTTTACGACG 59.095 50.000 0.00 0.00 35.09 5.12
406 419 1.645751 CTACAACCGAGTTTACGACGC 59.354 52.381 0.00 0.00 35.09 5.19
407 420 0.940991 ACAACCGAGTTTACGACGCC 60.941 55.000 0.00 0.00 35.09 5.68
408 421 0.665369 CAACCGAGTTTACGACGCCT 60.665 55.000 0.00 0.00 35.09 5.52
409 422 0.032540 AACCGAGTTTACGACGCCTT 59.967 50.000 0.00 0.00 35.09 4.35
410 423 0.387750 ACCGAGTTTACGACGCCTTC 60.388 55.000 0.00 0.00 35.09 3.46
411 424 0.387622 CCGAGTTTACGACGCCTTCA 60.388 55.000 0.00 0.00 35.09 3.02
412 425 0.982673 CGAGTTTACGACGCCTTCAG 59.017 55.000 0.00 0.00 35.09 3.02
413 426 1.400629 CGAGTTTACGACGCCTTCAGA 60.401 52.381 0.00 0.00 35.09 3.27
414 427 2.731341 CGAGTTTACGACGCCTTCAGAT 60.731 50.000 0.00 0.00 35.09 2.90
415 428 3.251571 GAGTTTACGACGCCTTCAGATT 58.748 45.455 0.00 0.00 0.00 2.40
416 429 2.993899 AGTTTACGACGCCTTCAGATTG 59.006 45.455 0.00 0.00 0.00 2.67
417 430 2.735134 GTTTACGACGCCTTCAGATTGT 59.265 45.455 0.00 0.00 0.00 2.71
418 431 2.273370 TACGACGCCTTCAGATTGTC 57.727 50.000 0.00 0.00 0.00 3.18
419 432 0.389948 ACGACGCCTTCAGATTGTCC 60.390 55.000 0.00 0.00 0.00 4.02
420 433 0.389817 CGACGCCTTCAGATTGTCCA 60.390 55.000 0.00 0.00 0.00 4.02
421 434 1.363744 GACGCCTTCAGATTGTCCAG 58.636 55.000 0.00 0.00 0.00 3.86
422 435 0.036010 ACGCCTTCAGATTGTCCAGG 60.036 55.000 0.00 0.00 0.00 4.45
423 436 1.372087 CGCCTTCAGATTGTCCAGGC 61.372 60.000 0.00 0.00 45.73 4.85
424 437 3.963733 CCTTCAGATTGTCCAGGCA 57.036 52.632 0.00 0.00 0.00 4.75
425 438 2.431954 CCTTCAGATTGTCCAGGCAT 57.568 50.000 0.00 0.00 0.00 4.40
426 439 2.022195 CCTTCAGATTGTCCAGGCATG 58.978 52.381 0.00 0.00 0.00 4.06
437 450 3.157727 CAGGCATGGACATTGTCGA 57.842 52.632 10.56 7.34 32.65 4.20
438 451 1.012086 CAGGCATGGACATTGTCGAG 58.988 55.000 10.56 4.40 32.65 4.04
439 452 0.107508 AGGCATGGACATTGTCGAGG 60.108 55.000 10.56 9.66 32.65 4.63
440 453 0.392998 GGCATGGACATTGTCGAGGT 60.393 55.000 13.66 0.00 32.65 3.85
441 454 1.009829 GCATGGACATTGTCGAGGTC 58.990 55.000 13.66 0.00 38.31 3.85
442 455 1.280982 CATGGACATTGTCGAGGTCG 58.719 55.000 10.56 0.00 39.90 4.79
455 468 4.730949 TCGAGGTCGATTTAAAGGATGT 57.269 40.909 0.00 0.00 44.22 3.06
456 469 4.430007 TCGAGGTCGATTTAAAGGATGTG 58.570 43.478 0.00 0.00 44.22 3.21
457 470 4.081862 TCGAGGTCGATTTAAAGGATGTGT 60.082 41.667 0.00 0.00 44.22 3.72
458 471 5.125900 TCGAGGTCGATTTAAAGGATGTGTA 59.874 40.000 0.00 0.00 44.22 2.90
459 472 5.983720 CGAGGTCGATTTAAAGGATGTGTAT 59.016 40.000 0.00 0.00 43.02 2.29
460 473 7.013559 TCGAGGTCGATTTAAAGGATGTGTATA 59.986 37.037 0.00 0.00 44.22 1.47
461 474 7.813148 CGAGGTCGATTTAAAGGATGTGTATAT 59.187 37.037 0.00 0.00 43.02 0.86
462 475 9.490379 GAGGTCGATTTAAAGGATGTGTATATT 57.510 33.333 0.00 0.00 0.00 1.28
463 476 9.847224 AGGTCGATTTAAAGGATGTGTATATTT 57.153 29.630 0.00 0.00 0.00 1.40
464 477 9.878599 GGTCGATTTAAAGGATGTGTATATTTG 57.121 33.333 0.00 0.00 0.00 2.32
465 478 9.878599 GTCGATTTAAAGGATGTGTATATTTGG 57.121 33.333 0.00 0.00 0.00 3.28
466 479 9.839817 TCGATTTAAAGGATGTGTATATTTGGA 57.160 29.630 0.00 0.00 0.00 3.53
467 480 9.878599 CGATTTAAAGGATGTGTATATTTGGAC 57.121 33.333 0.00 0.00 0.00 4.02
468 481 9.878599 GATTTAAAGGATGTGTATATTTGGACG 57.121 33.333 0.00 0.00 0.00 4.79
469 482 9.621629 ATTTAAAGGATGTGTATATTTGGACGA 57.378 29.630 0.00 0.00 0.00 4.20
470 483 6.920569 AAAGGATGTGTATATTTGGACGAC 57.079 37.500 0.00 0.00 0.00 4.34
471 484 4.957296 AGGATGTGTATATTTGGACGACC 58.043 43.478 0.00 0.00 0.00 4.79
472 485 4.407621 AGGATGTGTATATTTGGACGACCA 59.592 41.667 1.37 1.37 45.34 4.02
473 486 5.071788 AGGATGTGTATATTTGGACGACCAT 59.928 40.000 7.61 0.00 46.34 3.55
474 487 6.269077 AGGATGTGTATATTTGGACGACCATA 59.731 38.462 7.61 3.12 46.34 2.74
475 488 7.038302 AGGATGTGTATATTTGGACGACCATAT 60.038 37.037 7.61 11.10 46.34 1.78
476 489 8.255206 GGATGTGTATATTTGGACGACCATATA 58.745 37.037 16.40 16.40 46.34 0.86
477 490 9.302345 GATGTGTATATTTGGACGACCATATAG 57.698 37.037 18.22 0.00 46.34 1.31
478 491 8.411991 TGTGTATATTTGGACGACCATATAGA 57.588 34.615 18.22 13.12 46.34 1.98
479 492 8.301720 TGTGTATATTTGGACGACCATATAGAC 58.698 37.037 23.98 23.98 44.55 2.59
482 495 9.701098 GTATATTTGGACGACCATATAGACAAA 57.299 33.333 24.99 10.28 44.16 2.83
483 496 6.920569 ATTTGGACGACCATATAGACAAAC 57.079 37.500 7.61 0.00 46.34 2.93
484 497 5.670792 TTGGACGACCATATAGACAAACT 57.329 39.130 7.61 0.00 46.34 2.66
485 498 5.006153 TGGACGACCATATAGACAAACTG 57.994 43.478 1.37 0.00 41.77 3.16
486 499 4.464951 TGGACGACCATATAGACAAACTGT 59.535 41.667 1.37 0.00 41.77 3.55
487 500 5.046878 TGGACGACCATATAGACAAACTGTT 60.047 40.000 1.37 0.00 41.77 3.16
488 501 5.291128 GGACGACCATATAGACAAACTGTTG 59.709 44.000 0.00 0.00 37.15 3.33
489 502 5.175859 ACGACCATATAGACAAACTGTTGG 58.824 41.667 0.00 0.00 39.22 3.77
490 503 5.046878 ACGACCATATAGACAAACTGTTGGA 60.047 40.000 1.05 0.00 39.22 3.53
491 504 5.291128 CGACCATATAGACAAACTGTTGGAC 59.709 44.000 1.05 0.00 39.22 4.02
492 505 5.175859 ACCATATAGACAAACTGTTGGACG 58.824 41.667 1.05 0.00 39.22 4.79
493 506 5.175859 CCATATAGACAAACTGTTGGACGT 58.824 41.667 1.05 0.00 39.22 4.34
494 507 5.063438 CCATATAGACAAACTGTTGGACGTG 59.937 44.000 1.05 0.00 39.22 4.49
495 508 2.396590 AGACAAACTGTTGGACGTGT 57.603 45.000 1.05 0.00 39.22 4.49
496 509 2.006888 AGACAAACTGTTGGACGTGTG 58.993 47.619 1.05 0.00 39.22 3.82
497 510 1.063469 GACAAACTGTTGGACGTGTGG 59.937 52.381 1.05 0.00 39.22 4.17
498 511 0.380378 CAAACTGTTGGACGTGTGGG 59.620 55.000 0.00 0.00 0.00 4.61
499 512 1.381165 AAACTGTTGGACGTGTGGGC 61.381 55.000 0.00 0.00 0.00 5.36
500 513 2.111043 CTGTTGGACGTGTGGGCT 59.889 61.111 0.00 0.00 0.00 5.19
501 514 1.961277 CTGTTGGACGTGTGGGCTC 60.961 63.158 0.00 0.00 0.00 4.70
502 515 2.110213 GTTGGACGTGTGGGCTCA 59.890 61.111 0.00 0.00 0.00 4.26
503 516 1.302511 GTTGGACGTGTGGGCTCAT 60.303 57.895 0.00 0.00 0.00 2.90
504 517 1.302431 TTGGACGTGTGGGCTCATG 60.302 57.895 0.00 0.00 0.00 3.07
505 518 2.050836 TTGGACGTGTGGGCTCATGT 62.051 55.000 0.00 7.53 39.81 3.21
506 519 3.876300 GACGTGTGGGCTCATGTC 58.124 61.111 15.33 15.33 43.74 3.06
507 520 2.048222 ACGTGTGGGCTCATGTCG 60.048 61.111 0.00 0.00 32.95 4.35
508 521 2.048222 CGTGTGGGCTCATGTCGT 60.048 61.111 0.00 0.00 0.00 4.34
509 522 2.382746 CGTGTGGGCTCATGTCGTG 61.383 63.158 0.00 0.00 0.00 4.35
510 523 1.005037 GTGTGGGCTCATGTCGTGA 60.005 57.895 0.00 0.00 35.05 4.35
511 524 0.602638 GTGTGGGCTCATGTCGTGAA 60.603 55.000 0.00 0.00 36.14 3.18
512 525 0.107643 TGTGGGCTCATGTCGTGAAA 59.892 50.000 0.00 0.00 36.14 2.69
513 526 1.234821 GTGGGCTCATGTCGTGAAAA 58.765 50.000 0.00 0.00 36.14 2.29
514 527 1.606668 GTGGGCTCATGTCGTGAAAAA 59.393 47.619 0.00 0.00 36.14 1.94
515 528 1.606668 TGGGCTCATGTCGTGAAAAAC 59.393 47.619 0.00 0.00 36.14 2.43
516 529 1.880027 GGGCTCATGTCGTGAAAAACT 59.120 47.619 0.00 0.00 36.14 2.66
517 530 2.350772 GGGCTCATGTCGTGAAAAACTG 60.351 50.000 0.00 0.00 36.14 3.16
518 531 2.548057 GGCTCATGTCGTGAAAAACTGA 59.452 45.455 0.00 0.00 36.14 3.41
519 532 3.364366 GGCTCATGTCGTGAAAAACTGAG 60.364 47.826 0.00 0.00 36.14 3.35
520 533 3.248602 GCTCATGTCGTGAAAAACTGAGT 59.751 43.478 0.00 0.00 36.14 3.41
521 534 4.447724 GCTCATGTCGTGAAAAACTGAGTA 59.552 41.667 0.00 0.00 36.14 2.59
522 535 5.120830 GCTCATGTCGTGAAAAACTGAGTAT 59.879 40.000 0.00 0.00 36.14 2.12
523 536 6.310467 GCTCATGTCGTGAAAAACTGAGTATA 59.690 38.462 0.00 0.00 36.14 1.47
524 537 7.463383 GCTCATGTCGTGAAAAACTGAGTATAG 60.463 40.741 0.00 0.00 36.14 1.31
525 538 7.599171 TCATGTCGTGAAAAACTGAGTATAGA 58.401 34.615 0.00 0.00 32.78 1.98
526 539 7.541091 TCATGTCGTGAAAAACTGAGTATAGAC 59.459 37.037 0.00 0.00 32.78 2.59
527 540 6.741109 TGTCGTGAAAAACTGAGTATAGACA 58.259 36.000 0.00 0.00 0.00 3.41
528 541 7.375834 TGTCGTGAAAAACTGAGTATAGACAT 58.624 34.615 0.00 0.00 0.00 3.06
529 542 7.541091 TGTCGTGAAAAACTGAGTATAGACATC 59.459 37.037 0.00 0.00 0.00 3.06
530 543 7.009357 GTCGTGAAAAACTGAGTATAGACATCC 59.991 40.741 0.00 0.00 0.00 3.51
531 544 6.811665 CGTGAAAAACTGAGTATAGACATCCA 59.188 38.462 0.00 0.00 0.00 3.41
532 545 7.330946 CGTGAAAAACTGAGTATAGACATCCAA 59.669 37.037 0.00 0.00 0.00 3.53
533 546 8.999431 GTGAAAAACTGAGTATAGACATCCAAA 58.001 33.333 0.00 0.00 0.00 3.28
534 547 9.739276 TGAAAAACTGAGTATAGACATCCAAAT 57.261 29.630 0.00 0.00 0.00 2.32
539 552 8.768501 ACTGAGTATAGACATCCAAATAGACA 57.231 34.615 0.00 0.00 0.00 3.41
540 553 9.201989 ACTGAGTATAGACATCCAAATAGACAA 57.798 33.333 0.00 0.00 0.00 3.18
541 554 9.689976 CTGAGTATAGACATCCAAATAGACAAG 57.310 37.037 0.00 0.00 0.00 3.16
542 555 9.201989 TGAGTATAGACATCCAAATAGACAAGT 57.798 33.333 0.00 0.00 0.00 3.16
548 561 8.511604 AGACATCCAAATAGACAAGTTATTGG 57.488 34.615 0.00 0.00 40.97 3.16
549 562 8.328758 AGACATCCAAATAGACAAGTTATTGGA 58.671 33.333 7.43 7.43 40.97 3.53
550 563 8.511604 ACATCCAAATAGACAAGTTATTGGAG 57.488 34.615 10.41 5.96 40.97 3.86
551 564 8.328758 ACATCCAAATAGACAAGTTATTGGAGA 58.671 33.333 10.41 0.00 40.97 3.71
552 565 9.347240 CATCCAAATAGACAAGTTATTGGAGAT 57.653 33.333 10.41 0.00 40.97 2.75
553 566 8.737168 TCCAAATAGACAAGTTATTGGAGATG 57.263 34.615 1.12 0.00 40.97 2.90
554 567 7.283127 TCCAAATAGACAAGTTATTGGAGATGC 59.717 37.037 1.12 0.00 40.97 3.91
555 568 7.284034 CCAAATAGACAAGTTATTGGAGATGCT 59.716 37.037 0.00 0.00 40.97 3.79
556 569 8.341173 CAAATAGACAAGTTATTGGAGATGCTC 58.659 37.037 0.00 0.00 40.97 4.26
564 577 0.390340 TTGGAGATGCTCTGACACGC 60.390 55.000 0.00 0.00 0.00 5.34
566 579 1.875813 GAGATGCTCTGACACGCGG 60.876 63.158 12.47 1.27 0.00 6.46
585 598 4.681978 GGCTGACCGTTCGGTGCT 62.682 66.667 21.61 0.00 38.85 4.40
586 599 3.414700 GCTGACCGTTCGGTGCTG 61.415 66.667 21.61 15.74 38.85 4.41
587 600 3.414700 CTGACCGTTCGGTGCTGC 61.415 66.667 21.61 7.65 38.85 5.25
612 625 1.486439 CGGTGCAAACAAACATCCAC 58.514 50.000 0.00 0.00 0.00 4.02
640 653 4.933064 CGCTGCTCGGACCGGATC 62.933 72.222 15.25 1.18 33.78 3.36
641 654 4.593864 GCTGCTCGGACCGGATCC 62.594 72.222 15.25 10.97 45.20 3.36
653 666 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
654 667 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
655 668 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
658 671 4.729918 CGGCTTGCCTGCTCCCTT 62.730 66.667 10.12 0.00 0.00 3.95
659 672 2.283460 GGCTTGCCTGCTCCCTTT 60.283 61.111 4.11 0.00 0.00 3.11
660 673 2.346541 GGCTTGCCTGCTCCCTTTC 61.347 63.158 4.11 0.00 0.00 2.62
661 674 2.346541 GCTTGCCTGCTCCCTTTCC 61.347 63.158 0.00 0.00 0.00 3.13
662 675 2.034066 TTGCCTGCTCCCTTTCCG 59.966 61.111 0.00 0.00 0.00 4.30
663 676 2.754664 CTTGCCTGCTCCCTTTCCGT 62.755 60.000 0.00 0.00 0.00 4.69
664 677 2.747855 GCCTGCTCCCTTTCCGTG 60.748 66.667 0.00 0.00 0.00 4.94
665 678 2.747855 CCTGCTCCCTTTCCGTGC 60.748 66.667 0.00 0.00 0.00 5.34
666 679 2.348998 CTGCTCCCTTTCCGTGCT 59.651 61.111 0.00 0.00 0.00 4.40
667 680 1.743252 CTGCTCCCTTTCCGTGCTC 60.743 63.158 0.00 0.00 0.00 4.26
668 681 2.436824 GCTCCCTTTCCGTGCTCC 60.437 66.667 0.00 0.00 0.00 4.70
669 682 2.269241 CTCCCTTTCCGTGCTCCC 59.731 66.667 0.00 0.00 0.00 4.30
670 683 2.528127 TCCCTTTCCGTGCTCCCA 60.528 61.111 0.00 0.00 0.00 4.37
671 684 1.915078 CTCCCTTTCCGTGCTCCCAT 61.915 60.000 0.00 0.00 0.00 4.00
672 685 1.452108 CCCTTTCCGTGCTCCCATC 60.452 63.158 0.00 0.00 0.00 3.51
673 686 1.452108 CCTTTCCGTGCTCCCATCC 60.452 63.158 0.00 0.00 0.00 3.51
674 687 1.815421 CTTTCCGTGCTCCCATCCG 60.815 63.158 0.00 0.00 0.00 4.18
675 688 2.521958 CTTTCCGTGCTCCCATCCGT 62.522 60.000 0.00 0.00 0.00 4.69
676 689 2.796483 TTTCCGTGCTCCCATCCGTG 62.796 60.000 0.00 0.00 0.00 4.94
677 690 4.082523 CCGTGCTCCCATCCGTGT 62.083 66.667 0.00 0.00 0.00 4.49
678 691 2.047274 CGTGCTCCCATCCGTGTT 60.047 61.111 0.00 0.00 0.00 3.32
679 692 2.100631 CGTGCTCCCATCCGTGTTC 61.101 63.158 0.00 0.00 0.00 3.18
680 693 1.745489 GTGCTCCCATCCGTGTTCC 60.745 63.158 0.00 0.00 0.00 3.62
681 694 2.124695 GCTCCCATCCGTGTTCCC 60.125 66.667 0.00 0.00 0.00 3.97
682 695 2.966732 GCTCCCATCCGTGTTCCCA 61.967 63.158 0.00 0.00 0.00 4.37
683 696 1.078426 CTCCCATCCGTGTTCCCAC 60.078 63.158 0.00 0.00 38.27 4.61
684 697 1.537889 TCCCATCCGTGTTCCCACT 60.538 57.895 0.00 0.00 39.55 4.00
685 698 1.131303 TCCCATCCGTGTTCCCACTT 61.131 55.000 0.00 0.00 39.55 3.16
686 699 0.676782 CCCATCCGTGTTCCCACTTC 60.677 60.000 0.00 0.00 39.55 3.01
687 700 0.036164 CCATCCGTGTTCCCACTTCA 59.964 55.000 0.00 0.00 39.55 3.02
688 701 1.340017 CCATCCGTGTTCCCACTTCAT 60.340 52.381 0.00 0.00 39.55 2.57
689 702 2.009774 CATCCGTGTTCCCACTTCATC 58.990 52.381 0.00 0.00 39.55 2.92
690 703 0.323629 TCCGTGTTCCCACTTCATCC 59.676 55.000 0.00 0.00 39.55 3.51
691 704 0.324943 CCGTGTTCCCACTTCATCCT 59.675 55.000 0.00 0.00 39.55 3.24
692 705 1.553248 CCGTGTTCCCACTTCATCCTA 59.447 52.381 0.00 0.00 39.55 2.94
693 706 2.618053 CGTGTTCCCACTTCATCCTAC 58.382 52.381 0.00 0.00 39.55 3.18
694 707 2.618053 GTGTTCCCACTTCATCCTACG 58.382 52.381 0.00 0.00 38.61 3.51
695 708 1.553248 TGTTCCCACTTCATCCTACGG 59.447 52.381 0.00 0.00 0.00 4.02
696 709 0.539986 TTCCCACTTCATCCTACGGC 59.460 55.000 0.00 0.00 0.00 5.68
697 710 0.325296 TCCCACTTCATCCTACGGCT 60.325 55.000 0.00 0.00 0.00 5.52
698 711 0.179073 CCCACTTCATCCTACGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
699 712 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
700 713 1.471676 CCACTTCATCCTACGGCTGTC 60.472 57.143 0.00 0.00 0.00 3.51
701 714 1.478510 CACTTCATCCTACGGCTGTCT 59.521 52.381 0.00 0.00 0.00 3.41
702 715 2.093973 CACTTCATCCTACGGCTGTCTT 60.094 50.000 0.00 0.00 0.00 3.01
703 716 2.567615 ACTTCATCCTACGGCTGTCTTT 59.432 45.455 0.00 0.00 0.00 2.52
704 717 3.008049 ACTTCATCCTACGGCTGTCTTTT 59.992 43.478 0.00 0.00 0.00 2.27
705 718 3.695830 TCATCCTACGGCTGTCTTTTT 57.304 42.857 0.00 0.00 0.00 1.94
737 750 9.853177 TTTCCTTTCTAATCTAATCATCTTCCC 57.147 33.333 0.00 0.00 0.00 3.97
738 751 7.978925 TCCTTTCTAATCTAATCATCTTCCCC 58.021 38.462 0.00 0.00 0.00 4.81
739 752 7.017651 TCCTTTCTAATCTAATCATCTTCCCCC 59.982 40.741 0.00 0.00 0.00 5.40
758 771 2.159179 CCTGATTTTAAGGGGGTGGG 57.841 55.000 0.00 0.00 0.00 4.61
759 772 1.643811 CCTGATTTTAAGGGGGTGGGA 59.356 52.381 0.00 0.00 0.00 4.37
760 773 2.623239 CCTGATTTTAAGGGGGTGGGAC 60.623 54.545 0.00 0.00 0.00 4.46
761 774 1.359818 TGATTTTAAGGGGGTGGGACC 59.640 52.381 0.00 0.00 37.60 4.46
762 775 0.333652 ATTTTAAGGGGGTGGGACCG 59.666 55.000 0.00 0.00 39.83 4.79
763 776 1.791695 TTTTAAGGGGGTGGGACCGG 61.792 60.000 0.00 0.00 39.83 5.28
764 777 2.709721 TTTAAGGGGGTGGGACCGGA 62.710 60.000 9.46 0.00 39.83 5.14
765 778 3.929723 TAAGGGGGTGGGACCGGAC 62.930 68.421 9.46 0.00 39.83 4.79
769 782 2.284847 GGGTGGGACCGGACCTTA 60.285 66.667 22.36 9.44 39.83 2.69
770 783 1.691689 GGGTGGGACCGGACCTTAT 60.692 63.158 22.36 0.00 39.83 1.73
771 784 1.276859 GGGTGGGACCGGACCTTATT 61.277 60.000 22.36 0.00 39.83 1.40
772 785 0.622136 GGTGGGACCGGACCTTATTT 59.378 55.000 22.36 0.00 0.00 1.40
773 786 1.005097 GGTGGGACCGGACCTTATTTT 59.995 52.381 22.36 0.00 0.00 1.82
774 787 2.089201 GTGGGACCGGACCTTATTTTG 58.911 52.381 22.36 0.00 0.00 2.44
775 788 1.706305 TGGGACCGGACCTTATTTTGT 59.294 47.619 22.36 0.00 0.00 2.83
776 789 2.108601 TGGGACCGGACCTTATTTTGTT 59.891 45.455 22.36 0.00 0.00 2.83
777 790 2.751259 GGGACCGGACCTTATTTTGTTC 59.249 50.000 22.36 0.00 0.00 3.18
778 791 2.751259 GGACCGGACCTTATTTTGTTCC 59.249 50.000 16.26 0.00 0.00 3.62
779 792 3.414269 GACCGGACCTTATTTTGTTCCA 58.586 45.455 9.46 0.00 0.00 3.53
780 793 3.822167 GACCGGACCTTATTTTGTTCCAA 59.178 43.478 9.46 0.00 0.00 3.53
781 794 4.412843 ACCGGACCTTATTTTGTTCCAAT 58.587 39.130 9.46 0.00 0.00 3.16
782 795 4.461431 ACCGGACCTTATTTTGTTCCAATC 59.539 41.667 9.46 0.00 0.00 2.67
783 796 4.461081 CCGGACCTTATTTTGTTCCAATCA 59.539 41.667 0.00 0.00 0.00 2.57
784 797 5.047660 CCGGACCTTATTTTGTTCCAATCAA 60.048 40.000 0.00 0.00 0.00 2.57
785 798 6.451393 CGGACCTTATTTTGTTCCAATCAAA 58.549 36.000 0.00 0.00 33.76 2.69
786 799 7.096551 CGGACCTTATTTTGTTCCAATCAAAT 58.903 34.615 0.00 0.00 35.25 2.32
787 800 7.275560 CGGACCTTATTTTGTTCCAATCAAATC 59.724 37.037 0.00 0.00 35.25 2.17
788 801 8.093927 GGACCTTATTTTGTTCCAATCAAATCA 58.906 33.333 0.00 0.00 35.25 2.57
789 802 9.657419 GACCTTATTTTGTTCCAATCAAATCAT 57.343 29.630 0.00 0.00 35.25 2.45
790 803 9.439500 ACCTTATTTTGTTCCAATCAAATCATG 57.561 29.630 0.00 0.00 35.25 3.07
791 804 8.392612 CCTTATTTTGTTCCAATCAAATCATGC 58.607 33.333 0.00 0.00 35.25 4.06
792 805 6.746745 ATTTTGTTCCAATCAAATCATGCC 57.253 33.333 0.00 0.00 35.25 4.40
793 806 4.886496 TTGTTCCAATCAAATCATGCCA 57.114 36.364 0.00 0.00 0.00 4.92
794 807 4.191033 TGTTCCAATCAAATCATGCCAC 57.809 40.909 0.00 0.00 0.00 5.01
795 808 3.181397 GTTCCAATCAAATCATGCCACG 58.819 45.455 0.00 0.00 0.00 4.94
796 809 2.445427 TCCAATCAAATCATGCCACGT 58.555 42.857 0.00 0.00 0.00 4.49
797 810 3.615155 TCCAATCAAATCATGCCACGTA 58.385 40.909 0.00 0.00 0.00 3.57
798 811 4.206375 TCCAATCAAATCATGCCACGTAT 58.794 39.130 0.00 0.00 0.00 3.06
799 812 5.372373 TCCAATCAAATCATGCCACGTATA 58.628 37.500 0.00 0.00 0.00 1.47
800 813 5.238432 TCCAATCAAATCATGCCACGTATAC 59.762 40.000 0.00 0.00 0.00 1.47
801 814 4.990543 ATCAAATCATGCCACGTATACG 57.009 40.909 23.24 23.24 46.33 3.06
802 815 3.127589 TCAAATCATGCCACGTATACGG 58.872 45.455 27.62 16.52 44.95 4.02
803 816 2.163818 AATCATGCCACGTATACGGG 57.836 50.000 27.62 24.38 44.95 5.28
811 824 3.120796 ACGTATACGGGAGCATGGA 57.879 52.632 27.62 0.00 44.95 3.41
812 825 1.629043 ACGTATACGGGAGCATGGAT 58.371 50.000 27.62 1.09 44.95 3.41
813 826 1.272490 ACGTATACGGGAGCATGGATG 59.728 52.381 27.62 0.00 44.95 3.51
814 827 1.404181 CGTATACGGGAGCATGGATGG 60.404 57.143 17.61 0.00 35.37 3.51
815 828 1.899814 GTATACGGGAGCATGGATGGA 59.100 52.381 0.00 0.00 0.00 3.41
816 829 1.661463 ATACGGGAGCATGGATGGAT 58.339 50.000 0.00 0.00 0.00 3.41
817 830 0.686789 TACGGGAGCATGGATGGATG 59.313 55.000 0.00 0.00 0.00 3.51
822 835 2.333938 GCATGGATGGATGCACGC 59.666 61.111 0.00 0.00 46.77 5.34
823 836 2.635338 CATGGATGGATGCACGCG 59.365 61.111 3.53 3.53 0.00 6.01
824 837 2.592574 ATGGATGGATGCACGCGG 60.593 61.111 12.47 0.00 0.00 6.46
825 838 3.105686 ATGGATGGATGCACGCGGA 62.106 57.895 12.47 0.00 0.00 5.54
826 839 2.969238 GGATGGATGCACGCGGAG 60.969 66.667 12.47 3.23 0.00 4.63
827 840 2.969238 GATGGATGCACGCGGAGG 60.969 66.667 12.47 0.00 0.00 4.30
830 843 4.899239 GGATGCACGCGGAGGGAG 62.899 72.222 12.47 0.00 46.37 4.30
839 852 3.710722 CGGAGGGAGCAGGCAAGT 61.711 66.667 0.00 0.00 0.00 3.16
840 853 2.270527 GGAGGGAGCAGGCAAGTC 59.729 66.667 0.00 0.00 0.00 3.01
841 854 2.297129 GGAGGGAGCAGGCAAGTCT 61.297 63.158 0.00 0.00 0.00 3.24
842 855 1.220477 GAGGGAGCAGGCAAGTCTC 59.780 63.158 0.00 0.00 0.00 3.36
843 856 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
844 857 2.659610 GGAGCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
845 858 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
846 859 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
847 860 2.811317 GCAGGCAAGTCTCGTCCG 60.811 66.667 0.00 0.00 0.00 4.79
848 861 2.811317 CAGGCAAGTCTCGTCCGC 60.811 66.667 0.00 0.00 0.00 5.54
849 862 2.992114 AGGCAAGTCTCGTCCGCT 60.992 61.111 0.00 0.00 0.00 5.52
850 863 2.507324 GGCAAGTCTCGTCCGCTC 60.507 66.667 0.00 0.00 0.00 5.03
934 947 0.324614 AACACAGATGTCCATCGGCA 59.675 50.000 7.24 0.00 42.48 5.69
946 959 2.628178 TCCATCGGCACAGGATAAGTAG 59.372 50.000 0.00 0.00 0.00 2.57
951 964 3.130516 TCGGCACAGGATAAGTAGAGTTG 59.869 47.826 0.00 0.00 0.00 3.16
963 991 1.466025 TAGAGTTGAACCGGCACCGT 61.466 55.000 0.00 0.00 37.81 4.83
964 992 2.590575 AGTTGAACCGGCACCGTG 60.591 61.111 0.00 2.27 37.81 4.94
965 993 4.322385 GTTGAACCGGCACCGTGC 62.322 66.667 15.50 15.50 44.08 5.34
966 994 4.555709 TTGAACCGGCACCGTGCT 62.556 61.111 22.41 2.90 44.28 4.40
967 995 3.166490 TTGAACCGGCACCGTGCTA 62.166 57.895 22.41 1.01 44.28 3.49
968 996 3.116531 GAACCGGCACCGTGCTAC 61.117 66.667 22.41 6.58 44.28 3.58
969 997 3.584868 GAACCGGCACCGTGCTACT 62.585 63.158 22.41 5.65 44.28 2.57
970 998 3.584868 AACCGGCACCGTGCTACTC 62.585 63.158 22.41 5.50 44.28 2.59
971 999 4.814294 CCGGCACCGTGCTACTCC 62.814 72.222 22.41 5.13 44.28 3.85
1056 1084 1.421485 GATCGCCACAGCTTCGTTG 59.579 57.895 0.00 0.00 36.60 4.10
1306 1351 1.739667 CGTACCGATGGCCTGATGA 59.260 57.895 3.32 0.00 0.00 2.92
1551 1596 0.387112 CCGACAAGGTACGTACGCAA 60.387 55.000 16.72 0.03 34.51 4.85
1570 1636 1.024046 AGCACAACACTGTTGCACGA 61.024 50.000 19.86 0.00 34.18 4.35
1576 1645 4.908687 ACTGTTGCACGAGCCGCA 62.909 61.111 1.39 0.32 41.13 5.69
1577 1646 4.081030 CTGTTGCACGAGCCGCAG 62.081 66.667 1.39 6.85 41.18 5.18
1620 1779 7.214449 CGATACAATCATTTCAACTGTTCGAAC 59.786 37.037 21.42 21.42 0.00 3.95
1621 1780 6.377327 ACAATCATTTCAACTGTTCGAACT 57.623 33.333 27.32 7.05 0.00 3.01
1633 1792 4.201822 ACTGTTCGAACTTTTCTCTGTTGC 60.202 41.667 27.32 0.00 0.00 4.17
1635 1794 5.113383 TGTTCGAACTTTTCTCTGTTGCTA 58.887 37.500 27.32 0.00 0.00 3.49
1636 1795 5.006358 TGTTCGAACTTTTCTCTGTTGCTAC 59.994 40.000 27.32 0.00 0.00 3.58
1638 1797 3.734231 CGAACTTTTCTCTGTTGCTACGA 59.266 43.478 0.00 0.00 0.00 3.43
1645 1807 4.002906 TCTCTGTTGCTACGAATTTGGT 57.997 40.909 0.00 0.00 0.00 3.67
1692 1854 1.078759 GTGTGACCATTCTCGCCTCG 61.079 60.000 0.00 0.00 0.00 4.63
1757 1935 0.657368 GAGAAAACTGCAACGTGCCG 60.657 55.000 7.38 4.22 44.23 5.69
1758 1936 1.063488 GAAAACTGCAACGTGCCGT 59.937 52.632 7.38 4.77 44.23 5.68
1759 1937 0.305313 GAAAACTGCAACGTGCCGTA 59.695 50.000 7.27 0.00 44.23 4.02
1761 1939 0.812412 AAACTGCAACGTGCCGTACT 60.812 50.000 7.27 0.00 44.23 2.73
1762 1940 1.495584 AACTGCAACGTGCCGTACTG 61.496 55.000 7.27 4.12 44.23 2.74
1763 1941 1.663388 CTGCAACGTGCCGTACTGA 60.663 57.895 7.38 0.00 44.23 3.41
1764 1942 1.005512 TGCAACGTGCCGTACTGAT 60.006 52.632 7.38 0.00 44.23 2.90
1772 1968 2.416296 CGTGCCGTACTGATCCTTGTTA 60.416 50.000 0.00 0.00 0.00 2.41
2100 2296 3.518998 GCAGGCAGCAGCTCCATG 61.519 66.667 11.98 3.76 44.79 3.66
2107 2303 0.663688 CAGCAGCTCCATGATCAAGC 59.336 55.000 9.45 9.45 36.27 4.01
2127 2323 2.094417 GCGACCAGTTAATTCTGTGAGC 59.906 50.000 0.00 0.00 34.02 4.26
2333 2552 4.832248 ACCATCTATCTGACGAAAAGCAA 58.168 39.130 0.00 0.00 0.00 3.91
2360 2584 5.049680 TCTCGTAATTCTTGGTTGCTCAAAC 60.050 40.000 0.00 0.00 38.12 2.93
2685 2910 3.883669 TCTTCCTAGTTCCTAGACGGTC 58.116 50.000 0.00 0.00 36.26 4.79
2701 2927 3.941483 GACGGTCAGTTTCATCATCCATT 59.059 43.478 2.62 0.00 0.00 3.16
2719 2945 6.573664 TCCATTGCCATCGGAATAATAAAG 57.426 37.500 0.00 0.00 0.00 1.85
2720 2946 5.048083 TCCATTGCCATCGGAATAATAAAGC 60.048 40.000 0.00 0.00 0.00 3.51
2721 2947 4.481930 TTGCCATCGGAATAATAAAGCG 57.518 40.909 0.00 0.00 0.00 4.68
2722 2948 3.734463 TGCCATCGGAATAATAAAGCGA 58.266 40.909 0.00 0.00 0.00 4.93
2724 2950 3.125316 GCCATCGGAATAATAAAGCGAGG 59.875 47.826 0.00 0.00 0.00 4.63
2727 2965 4.659111 TCGGAATAATAAAGCGAGGTCA 57.341 40.909 0.00 0.00 0.00 4.02
2729 2967 3.493503 CGGAATAATAAAGCGAGGTCACC 59.506 47.826 0.00 0.00 0.00 4.02
2760 2998 0.108585 AGGTTCCGCACTGTGTCATT 59.891 50.000 9.86 0.00 0.00 2.57
2860 3432 1.519455 CCGACGGATGAGCAGGTTC 60.519 63.158 8.64 0.00 0.00 3.62
2864 3436 0.034896 ACGGATGAGCAGGTTCGTTT 59.965 50.000 0.00 0.00 0.00 3.60
2868 3440 2.160417 GGATGAGCAGGTTCGTTTTGAG 59.840 50.000 0.00 0.00 0.00 3.02
2872 3444 1.604278 AGCAGGTTCGTTTTGAGCTTC 59.396 47.619 0.00 0.00 0.00 3.86
2911 3491 0.035739 TGAGACCCCACGCTAAAACC 59.964 55.000 0.00 0.00 0.00 3.27
2941 3521 6.567602 ACTAGGAGAAATTGCAGTCCTATT 57.432 37.500 2.59 0.00 40.22 1.73
3039 3619 2.146342 CGCCTCAACACAGTTCTGAAT 58.854 47.619 6.83 0.00 0.00 2.57
3138 3743 8.313227 CGCAAAATACTGCTACAACATTAATTG 58.687 33.333 0.00 0.00 40.33 2.32
3238 3843 5.073691 TCTGGAAAACCAAGAGAGGAAGATT 59.926 40.000 0.00 0.00 0.00 2.40
3255 3861 5.452356 GGAAGATTAATCACAATGGGCTTGG 60.452 44.000 17.56 0.00 39.30 3.61
3289 3895 5.380043 AGCTGATTCAGGAAAACTTTGAGA 58.620 37.500 15.28 0.00 31.21 3.27
3325 3932 2.681976 GCCAGCTCTGCTATCTTGGAAA 60.682 50.000 0.00 0.00 36.40 3.13
3358 3965 8.691661 AACCAAACTGTGACTTATAGACAAAT 57.308 30.769 0.00 0.00 0.00 2.32
3390 3997 4.510038 AACAACATGAGTTCAAGATGCC 57.490 40.909 0.00 0.00 35.28 4.40
3404 4011 3.762293 TGCCGCTGCACAGATTTT 58.238 50.000 0.00 0.00 44.23 1.82
3485 4092 2.671177 CCAGCCGCAACTTCACGAG 61.671 63.158 0.00 0.00 0.00 4.18
3488 4095 2.244651 GCCGCAACTTCACGAGTGT 61.245 57.895 2.97 0.00 39.00 3.55
3500 4107 5.357032 ACTTCACGAGTGTTGGAAGAAAAAT 59.643 36.000 7.19 0.00 39.20 1.82
3501 4108 5.168526 TCACGAGTGTTGGAAGAAAAATG 57.831 39.130 2.97 0.00 0.00 2.32
3502 4109 4.638421 TCACGAGTGTTGGAAGAAAAATGT 59.362 37.500 2.97 0.00 0.00 2.71
3503 4110 4.970003 CACGAGTGTTGGAAGAAAAATGTC 59.030 41.667 0.00 0.00 0.00 3.06
3505 4112 4.275936 CGAGTGTTGGAAGAAAAATGTCCT 59.724 41.667 0.00 0.00 32.28 3.85
3506 4113 5.520376 AGTGTTGGAAGAAAAATGTCCTG 57.480 39.130 0.00 0.00 32.28 3.86
3509 4118 4.952957 TGTTGGAAGAAAAATGTCCTGACA 59.047 37.500 1.93 1.93 46.44 3.58
3513 4122 6.514947 TGGAAGAAAAATGTCCTGACAAATG 58.485 36.000 3.79 0.00 45.41 2.32
3574 4183 3.818773 CGGAAACCACAAGTAGGAACAAT 59.181 43.478 0.00 0.00 0.00 2.71
3604 4213 1.375908 CGGCCTGCTGTCTGCTTTA 60.376 57.895 0.00 0.00 43.37 1.85
3611 4225 4.509600 GCCTGCTGTCTGCTTTATTAGTAG 59.490 45.833 3.20 0.00 43.37 2.57
3612 4226 5.665459 CCTGCTGTCTGCTTTATTAGTAGT 58.335 41.667 3.20 0.00 43.37 2.73
3613 4227 6.683110 GCCTGCTGTCTGCTTTATTAGTAGTA 60.683 42.308 3.20 0.00 43.37 1.82
3712 4326 7.782049 AGACATTAGGAAATACGATCAACTCA 58.218 34.615 0.00 0.00 0.00 3.41
3719 4333 4.753516 AATACGATCAACTCATGGACCA 57.246 40.909 0.00 0.00 0.00 4.02
3731 4345 7.835682 TCAACTCATGGACCATCATTTTTATCT 59.164 33.333 3.21 0.00 0.00 1.98
3732 4346 7.578310 ACTCATGGACCATCATTTTTATCTG 57.422 36.000 3.21 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.013050 TCCATCGGCATTGATTGTAAACA 58.987 39.130 0.00 0.00 0.00 2.83
16 17 2.947652 AGTTCTCCATCGGCATTGATTG 59.052 45.455 0.00 0.00 0.00 2.67
114 115 5.294734 AGCAACAAAAATGGAGTTGGAAT 57.705 34.783 0.00 0.00 42.07 3.01
115 116 4.751767 AGCAACAAAAATGGAGTTGGAA 57.248 36.364 0.00 0.00 42.07 3.53
120 121 4.469657 TGAGGTAGCAACAAAAATGGAGT 58.530 39.130 0.00 0.00 0.00 3.85
126 127 4.277423 GGCTAACTGAGGTAGCAACAAAAA 59.723 41.667 28.64 0.00 38.50 1.94
180 181 1.580994 GCTGGGGGTTAGGGTCCAAT 61.581 60.000 0.00 0.00 0.00 3.16
183 184 0.622446 TTAGCTGGGGGTTAGGGTCC 60.622 60.000 0.00 0.00 0.00 4.46
184 185 0.545171 GTTAGCTGGGGGTTAGGGTC 59.455 60.000 0.00 0.00 0.00 4.46
186 187 0.917333 TGGTTAGCTGGGGGTTAGGG 60.917 60.000 0.00 0.00 0.00 3.53
187 188 0.546598 CTGGTTAGCTGGGGGTTAGG 59.453 60.000 0.00 0.00 0.00 2.69
188 189 0.546598 CCTGGTTAGCTGGGGGTTAG 59.453 60.000 0.00 0.00 0.00 2.34
189 190 1.568118 GCCTGGTTAGCTGGGGGTTA 61.568 60.000 9.27 0.00 0.00 2.85
193 206 2.273449 CTGCCTGGTTAGCTGGGG 59.727 66.667 9.27 0.00 0.00 4.96
195 208 1.303561 TTGCTGCCTGGTTAGCTGG 60.304 57.895 20.38 2.89 40.52 4.85
219 232 3.729716 GCTGCTACGTACAGTATTAGCAC 59.270 47.826 17.28 12.67 40.67 4.40
225 238 1.268589 CGCTGCTGCTACGTACAGTAT 60.269 52.381 19.43 0.00 37.47 2.12
248 261 2.328819 ATTGGAGATGCTCTCAGTGC 57.671 50.000 13.06 0.00 45.12 4.40
251 264 3.747854 TGCTATTGGAGATGCTCTCAG 57.252 47.619 13.06 5.27 45.12 3.35
252 265 3.390311 ACATGCTATTGGAGATGCTCTCA 59.610 43.478 13.06 0.00 45.12 3.27
253 266 3.747010 CACATGCTATTGGAGATGCTCTC 59.253 47.826 0.00 5.01 42.66 3.20
254 267 3.741249 CACATGCTATTGGAGATGCTCT 58.259 45.455 0.00 0.00 0.00 4.09
255 268 2.225963 GCACATGCTATTGGAGATGCTC 59.774 50.000 0.00 0.00 38.21 4.26
256 269 2.228059 GCACATGCTATTGGAGATGCT 58.772 47.619 0.00 0.00 38.21 3.79
257 270 1.951602 TGCACATGCTATTGGAGATGC 59.048 47.619 5.31 1.27 42.66 3.91
258 271 6.510879 AATATGCACATGCTATTGGAGATG 57.489 37.500 5.31 0.00 42.66 2.90
259 272 6.071560 CCAAATATGCACATGCTATTGGAGAT 60.072 38.462 17.75 1.21 42.66 2.75
260 273 5.242171 CCAAATATGCACATGCTATTGGAGA 59.758 40.000 17.75 0.00 42.66 3.71
261 274 5.242171 TCCAAATATGCACATGCTATTGGAG 59.758 40.000 19.67 10.03 42.66 3.86
262 275 5.139001 TCCAAATATGCACATGCTATTGGA 58.861 37.500 19.67 19.67 42.66 3.53
263 276 5.456548 TCCAAATATGCACATGCTATTGG 57.543 39.130 17.07 17.07 42.66 3.16
264 277 6.452242 ACATCCAAATATGCACATGCTATTG 58.548 36.000 5.31 5.26 42.66 1.90
265 278 6.492429 AGACATCCAAATATGCACATGCTATT 59.508 34.615 5.31 4.49 42.66 1.73
266 279 6.008331 AGACATCCAAATATGCACATGCTAT 58.992 36.000 5.31 0.31 42.66 2.97
267 280 5.379187 AGACATCCAAATATGCACATGCTA 58.621 37.500 5.31 0.00 42.66 3.49
268 281 4.212716 AGACATCCAAATATGCACATGCT 58.787 39.130 5.31 0.00 42.66 3.79
269 282 4.579454 AGACATCCAAATATGCACATGC 57.421 40.909 0.00 0.00 42.50 4.06
297 310 9.678941 GATGTGAAACTGAACGTATATATGAGA 57.321 33.333 8.98 0.00 38.04 3.27
298 311 9.463443 TGATGTGAAACTGAACGTATATATGAG 57.537 33.333 8.98 0.00 38.04 2.90
299 312 9.463443 CTGATGTGAAACTGAACGTATATATGA 57.537 33.333 8.98 0.00 38.04 2.15
300 313 9.463443 TCTGATGTGAAACTGAACGTATATATG 57.537 33.333 0.12 0.12 38.04 1.78
302 315 9.297586 GTTCTGATGTGAAACTGAACGTATATA 57.702 33.333 0.00 0.00 38.04 0.86
303 316 8.186178 GTTCTGATGTGAAACTGAACGTATAT 57.814 34.615 0.00 0.00 38.04 0.86
304 317 7.576750 GTTCTGATGTGAAACTGAACGTATA 57.423 36.000 0.00 0.00 38.04 1.47
305 318 6.467723 GTTCTGATGTGAAACTGAACGTAT 57.532 37.500 0.00 0.00 38.04 3.06
306 319 5.900339 GTTCTGATGTGAAACTGAACGTA 57.100 39.130 0.00 0.00 38.04 3.57
307 320 4.795970 GTTCTGATGTGAAACTGAACGT 57.204 40.909 0.00 0.00 38.04 3.99
309 322 4.508124 AGACGTTCTGATGTGAAACTGAAC 59.492 41.667 0.00 0.00 39.65 3.18
310 323 4.693283 AGACGTTCTGATGTGAAACTGAA 58.307 39.130 0.00 0.00 38.04 3.02
311 324 4.322080 AGACGTTCTGATGTGAAACTGA 57.678 40.909 0.00 0.00 38.04 3.41
312 325 7.993821 ATATAGACGTTCTGATGTGAAACTG 57.006 36.000 0.00 0.00 38.04 3.16
313 326 8.683615 TGTATATAGACGTTCTGATGTGAAACT 58.316 33.333 0.00 0.00 38.04 2.66
314 327 8.851960 TGTATATAGACGTTCTGATGTGAAAC 57.148 34.615 0.00 0.00 37.35 2.78
315 328 8.135529 CCTGTATATAGACGTTCTGATGTGAAA 58.864 37.037 0.00 0.00 0.00 2.69
316 329 7.255486 CCCTGTATATAGACGTTCTGATGTGAA 60.255 40.741 0.00 0.00 0.00 3.18
317 330 6.206829 CCCTGTATATAGACGTTCTGATGTGA 59.793 42.308 0.00 0.00 0.00 3.58
318 331 6.206829 TCCCTGTATATAGACGTTCTGATGTG 59.793 42.308 0.00 0.00 0.00 3.21
319 332 6.207025 GTCCCTGTATATAGACGTTCTGATGT 59.793 42.308 0.00 0.00 0.00 3.06
320 333 6.349445 GGTCCCTGTATATAGACGTTCTGATG 60.349 46.154 0.00 0.00 0.00 3.07
321 334 5.711036 GGTCCCTGTATATAGACGTTCTGAT 59.289 44.000 0.00 0.00 0.00 2.90
322 335 5.068636 GGTCCCTGTATATAGACGTTCTGA 58.931 45.833 0.00 0.00 0.00 3.27
323 336 4.825634 TGGTCCCTGTATATAGACGTTCTG 59.174 45.833 0.00 0.00 0.00 3.02
324 337 5.057843 TGGTCCCTGTATATAGACGTTCT 57.942 43.478 0.00 0.00 0.00 3.01
325 338 5.475909 TCATGGTCCCTGTATATAGACGTTC 59.524 44.000 0.00 0.00 0.00 3.95
326 339 5.243283 GTCATGGTCCCTGTATATAGACGTT 59.757 44.000 0.00 0.00 0.00 3.99
327 340 4.765856 GTCATGGTCCCTGTATATAGACGT 59.234 45.833 0.00 0.00 0.00 4.34
328 341 4.765339 TGTCATGGTCCCTGTATATAGACG 59.235 45.833 0.00 0.00 0.00 4.18
329 342 5.186021 CCTGTCATGGTCCCTGTATATAGAC 59.814 48.000 0.00 0.00 0.00 2.59
330 343 5.162870 ACCTGTCATGGTCCCTGTATATAGA 60.163 44.000 0.00 0.00 34.86 1.98
331 344 5.047021 CACCTGTCATGGTCCCTGTATATAG 60.047 48.000 0.00 0.00 38.45 1.31
332 345 4.838423 CACCTGTCATGGTCCCTGTATATA 59.162 45.833 0.00 0.00 38.45 0.86
333 346 3.648067 CACCTGTCATGGTCCCTGTATAT 59.352 47.826 0.00 0.00 38.45 0.86
334 347 3.038280 CACCTGTCATGGTCCCTGTATA 58.962 50.000 0.00 0.00 38.45 1.47
335 348 1.839994 CACCTGTCATGGTCCCTGTAT 59.160 52.381 0.00 0.00 38.45 2.29
336 349 1.275666 CACCTGTCATGGTCCCTGTA 58.724 55.000 0.00 0.00 38.45 2.74
337 350 1.492133 CCACCTGTCATGGTCCCTGT 61.492 60.000 0.00 0.00 38.45 4.00
338 351 1.300963 CCACCTGTCATGGTCCCTG 59.699 63.158 0.00 0.00 38.45 4.45
339 352 1.925455 CCCACCTGTCATGGTCCCT 60.925 63.158 0.00 0.00 38.45 4.20
340 353 2.677228 CCCACCTGTCATGGTCCC 59.323 66.667 0.00 0.00 38.45 4.46
341 354 2.044946 GCCCACCTGTCATGGTCC 60.045 66.667 0.00 0.00 38.45 4.46
342 355 2.044946 GGCCCACCTGTCATGGTC 60.045 66.667 0.00 0.00 38.45 4.02
343 356 2.215451 GATGGCCCACCTGTCATGGT 62.215 60.000 0.00 0.00 41.77 3.55
344 357 1.454479 GATGGCCCACCTGTCATGG 60.454 63.158 0.00 0.00 36.63 3.66
345 358 1.820906 CGATGGCCCACCTGTCATG 60.821 63.158 0.00 0.00 36.63 3.07
346 359 2.591753 CGATGGCCCACCTGTCAT 59.408 61.111 0.00 0.00 36.63 3.06
347 360 4.408821 GCGATGGCCCACCTGTCA 62.409 66.667 0.00 0.00 36.63 3.58
348 361 4.101448 AGCGATGGCCCACCTGTC 62.101 66.667 0.00 0.00 41.24 3.51
349 362 4.415150 CAGCGATGGCCCACCTGT 62.415 66.667 0.00 0.00 41.24 4.00
350 363 4.415150 ACAGCGATGGCCCACCTG 62.415 66.667 5.32 4.17 41.24 4.00
351 364 4.415150 CACAGCGATGGCCCACCT 62.415 66.667 5.32 0.00 41.24 4.00
352 365 4.408821 TCACAGCGATGGCCCACC 62.409 66.667 5.32 0.00 41.24 4.61
353 366 2.821366 CTCACAGCGATGGCCCAC 60.821 66.667 5.32 0.00 41.24 4.61
354 367 3.002583 TCTCACAGCGATGGCCCA 61.003 61.111 5.32 0.00 41.24 5.36
355 368 2.202987 CTCTCACAGCGATGGCCC 60.203 66.667 5.32 0.00 41.24 5.80
356 369 0.391661 TTTCTCTCACAGCGATGGCC 60.392 55.000 5.32 0.00 41.24 5.36
357 370 1.005340 CTTTCTCTCACAGCGATGGC 58.995 55.000 5.32 0.00 40.37 4.40
358 371 2.662006 TCTTTCTCTCACAGCGATGG 57.338 50.000 5.32 0.00 0.00 3.51
359 372 4.628766 TGATTTCTTTCTCTCACAGCGATG 59.371 41.667 0.00 0.00 0.00 3.84
360 373 4.825422 TGATTTCTTTCTCTCACAGCGAT 58.175 39.130 0.00 0.00 0.00 4.58
361 374 4.257267 TGATTTCTTTCTCTCACAGCGA 57.743 40.909 0.00 0.00 0.00 4.93
362 375 4.628766 TCATGATTTCTTTCTCTCACAGCG 59.371 41.667 0.00 0.00 0.00 5.18
363 376 5.642919 AGTCATGATTTCTTTCTCTCACAGC 59.357 40.000 0.00 0.00 0.00 4.40
364 377 7.816513 TGTAGTCATGATTTCTTTCTCTCACAG 59.183 37.037 0.00 0.00 0.00 3.66
365 378 7.670364 TGTAGTCATGATTTCTTTCTCTCACA 58.330 34.615 0.00 0.00 0.00 3.58
366 379 8.439286 GTTGTAGTCATGATTTCTTTCTCTCAC 58.561 37.037 0.00 0.00 0.00 3.51
367 380 7.604164 GGTTGTAGTCATGATTTCTTTCTCTCA 59.396 37.037 0.00 0.00 0.00 3.27
368 381 7.201478 CGGTTGTAGTCATGATTTCTTTCTCTC 60.201 40.741 0.00 0.00 0.00 3.20
369 382 6.591834 CGGTTGTAGTCATGATTTCTTTCTCT 59.408 38.462 0.00 0.00 0.00 3.10
370 383 6.590292 TCGGTTGTAGTCATGATTTCTTTCTC 59.410 38.462 0.00 0.00 0.00 2.87
371 384 6.464222 TCGGTTGTAGTCATGATTTCTTTCT 58.536 36.000 0.00 0.00 0.00 2.52
372 385 6.369065 ACTCGGTTGTAGTCATGATTTCTTTC 59.631 38.462 0.00 0.00 0.00 2.62
373 386 6.231211 ACTCGGTTGTAGTCATGATTTCTTT 58.769 36.000 0.00 0.00 0.00 2.52
374 387 5.794894 ACTCGGTTGTAGTCATGATTTCTT 58.205 37.500 0.00 0.00 0.00 2.52
375 388 5.407407 ACTCGGTTGTAGTCATGATTTCT 57.593 39.130 0.00 0.00 0.00 2.52
376 389 6.481954 AAACTCGGTTGTAGTCATGATTTC 57.518 37.500 0.00 0.00 0.00 2.17
377 390 6.090358 CGTAAACTCGGTTGTAGTCATGATTT 59.910 38.462 0.00 0.00 0.00 2.17
378 391 5.575606 CGTAAACTCGGTTGTAGTCATGATT 59.424 40.000 0.00 0.00 0.00 2.57
379 392 5.100259 CGTAAACTCGGTTGTAGTCATGAT 58.900 41.667 0.00 0.00 0.00 2.45
380 393 4.216042 TCGTAAACTCGGTTGTAGTCATGA 59.784 41.667 0.00 0.00 0.00 3.07
381 394 4.322804 GTCGTAAACTCGGTTGTAGTCATG 59.677 45.833 0.00 0.00 0.00 3.07
382 395 4.479619 GTCGTAAACTCGGTTGTAGTCAT 58.520 43.478 0.00 0.00 0.00 3.06
383 396 3.606846 CGTCGTAAACTCGGTTGTAGTCA 60.607 47.826 0.00 0.00 0.00 3.41
384 397 2.904932 CGTCGTAAACTCGGTTGTAGTC 59.095 50.000 0.00 0.00 0.00 2.59
385 398 2.918131 GCGTCGTAAACTCGGTTGTAGT 60.918 50.000 0.00 0.00 0.00 2.73
386 399 1.645751 GCGTCGTAAACTCGGTTGTAG 59.354 52.381 0.00 0.00 0.00 2.74
387 400 1.665735 GGCGTCGTAAACTCGGTTGTA 60.666 52.381 0.00 0.00 0.00 2.41
388 401 0.940991 GGCGTCGTAAACTCGGTTGT 60.941 55.000 0.00 0.00 0.00 3.32
389 402 0.665369 AGGCGTCGTAAACTCGGTTG 60.665 55.000 0.00 0.00 0.00 3.77
390 403 0.032540 AAGGCGTCGTAAACTCGGTT 59.967 50.000 0.00 0.00 0.00 4.44
391 404 0.387750 GAAGGCGTCGTAAACTCGGT 60.388 55.000 0.00 0.00 0.00 4.69
392 405 0.387622 TGAAGGCGTCGTAAACTCGG 60.388 55.000 0.00 0.00 0.00 4.63
393 406 0.982673 CTGAAGGCGTCGTAAACTCG 59.017 55.000 0.00 0.00 0.00 4.18
394 407 2.342910 TCTGAAGGCGTCGTAAACTC 57.657 50.000 0.00 0.00 0.00 3.01
395 408 2.993899 CAATCTGAAGGCGTCGTAAACT 59.006 45.455 0.00 0.00 0.00 2.66
396 409 2.735134 ACAATCTGAAGGCGTCGTAAAC 59.265 45.455 0.00 0.00 0.00 2.01
397 410 2.991190 GACAATCTGAAGGCGTCGTAAA 59.009 45.455 0.00 0.00 0.00 2.01
398 411 2.602878 GACAATCTGAAGGCGTCGTAA 58.397 47.619 0.00 0.00 0.00 3.18
399 412 1.135199 GGACAATCTGAAGGCGTCGTA 60.135 52.381 0.00 0.00 0.00 3.43
400 413 0.389948 GGACAATCTGAAGGCGTCGT 60.390 55.000 0.00 0.00 0.00 4.34
401 414 0.389817 TGGACAATCTGAAGGCGTCG 60.390 55.000 0.00 0.00 0.00 5.12
402 415 1.363744 CTGGACAATCTGAAGGCGTC 58.636 55.000 0.00 0.00 0.00 5.19
403 416 0.036010 CCTGGACAATCTGAAGGCGT 60.036 55.000 0.00 0.00 0.00 5.68
404 417 1.372087 GCCTGGACAATCTGAAGGCG 61.372 60.000 0.00 0.00 43.64 5.52
405 418 2.486796 GCCTGGACAATCTGAAGGC 58.513 57.895 0.00 0.44 46.04 4.35
406 419 2.022195 CATGCCTGGACAATCTGAAGG 58.978 52.381 0.00 0.00 0.00 3.46
407 420 2.022195 CCATGCCTGGACAATCTGAAG 58.978 52.381 0.97 0.00 46.37 3.02
408 421 1.634973 TCCATGCCTGGACAATCTGAA 59.365 47.619 6.63 0.00 46.95 3.02
409 422 1.288188 TCCATGCCTGGACAATCTGA 58.712 50.000 6.63 0.00 46.95 3.27
410 423 3.888424 TCCATGCCTGGACAATCTG 57.112 52.632 6.63 0.00 46.95 2.90
418 431 0.392863 TCGACAATGTCCATGCCTGG 60.393 55.000 7.91 0.78 44.64 4.45
419 432 1.012086 CTCGACAATGTCCATGCCTG 58.988 55.000 7.91 0.00 0.00 4.85
420 433 0.107508 CCTCGACAATGTCCATGCCT 60.108 55.000 7.91 0.00 0.00 4.75
421 434 0.392998 ACCTCGACAATGTCCATGCC 60.393 55.000 7.91 0.00 0.00 4.40
422 435 1.009829 GACCTCGACAATGTCCATGC 58.990 55.000 7.91 0.00 0.00 4.06
423 436 1.135112 TCGACCTCGACAATGTCCATG 60.135 52.381 7.91 0.00 44.22 3.66
424 437 1.182667 TCGACCTCGACAATGTCCAT 58.817 50.000 7.91 0.00 44.22 3.41
425 438 2.648593 TCGACCTCGACAATGTCCA 58.351 52.632 7.91 0.00 44.22 4.02
435 448 4.181578 ACACATCCTTTAAATCGACCTCG 58.818 43.478 0.00 0.00 41.45 4.63
436 449 9.490379 AATATACACATCCTTTAAATCGACCTC 57.510 33.333 0.00 0.00 0.00 3.85
437 450 9.847224 AAATATACACATCCTTTAAATCGACCT 57.153 29.630 0.00 0.00 0.00 3.85
438 451 9.878599 CAAATATACACATCCTTTAAATCGACC 57.121 33.333 0.00 0.00 0.00 4.79
439 452 9.878599 CCAAATATACACATCCTTTAAATCGAC 57.121 33.333 0.00 0.00 0.00 4.20
440 453 9.839817 TCCAAATATACACATCCTTTAAATCGA 57.160 29.630 0.00 0.00 0.00 3.59
441 454 9.878599 GTCCAAATATACACATCCTTTAAATCG 57.121 33.333 0.00 0.00 0.00 3.34
442 455 9.878599 CGTCCAAATATACACATCCTTTAAATC 57.121 33.333 0.00 0.00 0.00 2.17
443 456 9.621629 TCGTCCAAATATACACATCCTTTAAAT 57.378 29.630 0.00 0.00 0.00 1.40
444 457 8.885722 GTCGTCCAAATATACACATCCTTTAAA 58.114 33.333 0.00 0.00 0.00 1.52
445 458 7.496591 GGTCGTCCAAATATACACATCCTTTAA 59.503 37.037 0.00 0.00 0.00 1.52
446 459 6.987992 GGTCGTCCAAATATACACATCCTTTA 59.012 38.462 0.00 0.00 0.00 1.85
447 460 5.820947 GGTCGTCCAAATATACACATCCTTT 59.179 40.000 0.00 0.00 0.00 3.11
448 461 5.104693 TGGTCGTCCAAATATACACATCCTT 60.105 40.000 0.00 0.00 41.25 3.36
449 462 4.407621 TGGTCGTCCAAATATACACATCCT 59.592 41.667 0.00 0.00 41.25 3.24
450 463 4.699637 TGGTCGTCCAAATATACACATCC 58.300 43.478 0.00 0.00 41.25 3.51
464 477 5.007385 ACAGTTTGTCTATATGGTCGTCC 57.993 43.478 0.00 0.00 0.00 4.79
465 478 5.291128 CCAACAGTTTGTCTATATGGTCGTC 59.709 44.000 0.00 0.00 0.00 4.20
466 479 5.046878 TCCAACAGTTTGTCTATATGGTCGT 60.047 40.000 0.00 0.00 0.00 4.34
467 480 5.291128 GTCCAACAGTTTGTCTATATGGTCG 59.709 44.000 0.00 0.00 0.00 4.79
468 481 5.291128 CGTCCAACAGTTTGTCTATATGGTC 59.709 44.000 0.00 0.00 0.00 4.02
469 482 5.175859 CGTCCAACAGTTTGTCTATATGGT 58.824 41.667 0.00 0.00 0.00 3.55
470 483 5.063438 CACGTCCAACAGTTTGTCTATATGG 59.937 44.000 0.00 0.00 0.00 2.74
471 484 5.637810 ACACGTCCAACAGTTTGTCTATATG 59.362 40.000 0.00 0.00 0.00 1.78
472 485 5.637810 CACACGTCCAACAGTTTGTCTATAT 59.362 40.000 0.00 0.00 0.00 0.86
473 486 4.986034 CACACGTCCAACAGTTTGTCTATA 59.014 41.667 0.00 0.00 0.00 1.31
474 487 3.807622 CACACGTCCAACAGTTTGTCTAT 59.192 43.478 0.00 0.00 0.00 1.98
475 488 3.191669 CACACGTCCAACAGTTTGTCTA 58.808 45.455 0.00 0.00 0.00 2.59
476 489 2.006888 CACACGTCCAACAGTTTGTCT 58.993 47.619 0.00 0.00 0.00 3.41
477 490 1.063469 CCACACGTCCAACAGTTTGTC 59.937 52.381 0.00 0.00 0.00 3.18
478 491 1.091537 CCACACGTCCAACAGTTTGT 58.908 50.000 0.00 0.00 0.00 2.83
479 492 0.380378 CCCACACGTCCAACAGTTTG 59.620 55.000 0.00 0.00 0.00 2.93
480 493 1.381165 GCCCACACGTCCAACAGTTT 61.381 55.000 0.00 0.00 0.00 2.66
481 494 1.822186 GCCCACACGTCCAACAGTT 60.822 57.895 0.00 0.00 0.00 3.16
482 495 2.203153 GCCCACACGTCCAACAGT 60.203 61.111 0.00 0.00 0.00 3.55
483 496 1.961277 GAGCCCACACGTCCAACAG 60.961 63.158 0.00 0.00 0.00 3.16
484 497 2.050836 ATGAGCCCACACGTCCAACA 62.051 55.000 0.00 0.00 0.00 3.33
485 498 1.302511 ATGAGCCCACACGTCCAAC 60.303 57.895 0.00 0.00 0.00 3.77
486 499 1.302431 CATGAGCCCACACGTCCAA 60.302 57.895 0.00 0.00 0.00 3.53
487 500 2.347114 CATGAGCCCACACGTCCA 59.653 61.111 0.00 0.00 0.00 4.02
488 501 1.741770 GACATGAGCCCACACGTCC 60.742 63.158 0.00 0.00 0.00 4.79
489 502 2.094659 CGACATGAGCCCACACGTC 61.095 63.158 0.00 0.00 0.00 4.34
490 503 2.048222 CGACATGAGCCCACACGT 60.048 61.111 0.00 0.00 0.00 4.49
491 504 2.048222 ACGACATGAGCCCACACG 60.048 61.111 0.00 0.00 0.00 4.49
492 505 0.602638 TTCACGACATGAGCCCACAC 60.603 55.000 0.00 0.00 38.99 3.82
493 506 0.107643 TTTCACGACATGAGCCCACA 59.892 50.000 0.00 0.00 38.99 4.17
494 507 1.234821 TTTTCACGACATGAGCCCAC 58.765 50.000 0.00 0.00 38.99 4.61
495 508 1.606668 GTTTTTCACGACATGAGCCCA 59.393 47.619 0.00 0.00 38.99 5.36
496 509 1.880027 AGTTTTTCACGACATGAGCCC 59.120 47.619 0.00 0.00 38.99 5.19
497 510 2.548057 TCAGTTTTTCACGACATGAGCC 59.452 45.455 0.00 0.00 38.99 4.70
498 511 3.248602 ACTCAGTTTTTCACGACATGAGC 59.751 43.478 0.00 0.00 38.99 4.26
499 512 6.712241 ATACTCAGTTTTTCACGACATGAG 57.288 37.500 0.00 0.00 38.99 2.90
500 513 7.541091 GTCTATACTCAGTTTTTCACGACATGA 59.459 37.037 0.00 0.00 34.65 3.07
501 514 7.328493 TGTCTATACTCAGTTTTTCACGACATG 59.672 37.037 0.00 0.00 0.00 3.21
502 515 7.375834 TGTCTATACTCAGTTTTTCACGACAT 58.624 34.615 0.00 0.00 0.00 3.06
503 516 6.741109 TGTCTATACTCAGTTTTTCACGACA 58.259 36.000 0.00 0.00 0.00 4.35
504 517 7.009357 GGATGTCTATACTCAGTTTTTCACGAC 59.991 40.741 0.00 0.00 0.00 4.34
505 518 7.033791 GGATGTCTATACTCAGTTTTTCACGA 58.966 38.462 0.00 0.00 0.00 4.35
506 519 6.811665 TGGATGTCTATACTCAGTTTTTCACG 59.188 38.462 0.00 0.00 0.00 4.35
507 520 8.547967 TTGGATGTCTATACTCAGTTTTTCAC 57.452 34.615 0.00 0.00 0.00 3.18
508 521 9.739276 ATTTGGATGTCTATACTCAGTTTTTCA 57.261 29.630 0.00 0.00 0.00 2.69
513 526 9.201989 TGTCTATTTGGATGTCTATACTCAGTT 57.798 33.333 0.00 0.00 0.00 3.16
514 527 8.768501 TGTCTATTTGGATGTCTATACTCAGT 57.231 34.615 0.00 0.00 0.00 3.41
515 528 9.689976 CTTGTCTATTTGGATGTCTATACTCAG 57.310 37.037 0.00 0.00 0.00 3.35
516 529 9.201989 ACTTGTCTATTTGGATGTCTATACTCA 57.798 33.333 0.00 0.00 0.00 3.41
522 535 9.613428 CCAATAACTTGTCTATTTGGATGTCTA 57.387 33.333 0.00 0.00 0.00 2.59
523 536 8.328758 TCCAATAACTTGTCTATTTGGATGTCT 58.671 33.333 0.00 0.00 0.00 3.41
524 537 8.506168 TCCAATAACTTGTCTATTTGGATGTC 57.494 34.615 0.00 0.00 0.00 3.06
525 538 8.328758 TCTCCAATAACTTGTCTATTTGGATGT 58.671 33.333 2.93 0.00 0.00 3.06
526 539 8.737168 TCTCCAATAACTTGTCTATTTGGATG 57.263 34.615 2.93 0.00 0.00 3.51
527 540 9.347240 CATCTCCAATAACTTGTCTATTTGGAT 57.653 33.333 2.93 0.00 0.00 3.41
528 541 7.283127 GCATCTCCAATAACTTGTCTATTTGGA 59.717 37.037 0.00 0.00 0.00 3.53
529 542 7.284034 AGCATCTCCAATAACTTGTCTATTTGG 59.716 37.037 0.00 0.00 0.00 3.28
530 543 8.218338 AGCATCTCCAATAACTTGTCTATTTG 57.782 34.615 0.00 0.00 0.00 2.32
531 544 8.443953 GAGCATCTCCAATAACTTGTCTATTT 57.556 34.615 0.00 0.00 0.00 1.40
550 563 3.558411 GCCGCGTGTCAGAGCATC 61.558 66.667 4.92 0.00 0.00 3.91
589 602 3.677340 GTTTGTTTGCACCGCGCG 61.677 61.111 25.67 25.67 46.97 6.86
590 603 1.875419 GATGTTTGTTTGCACCGCGC 61.875 55.000 0.00 0.00 42.89 6.86
591 604 1.274798 GGATGTTTGTTTGCACCGCG 61.275 55.000 0.00 0.00 0.00 6.46
592 605 0.249238 TGGATGTTTGTTTGCACCGC 60.249 50.000 0.00 0.00 0.00 5.68
593 606 1.486439 GTGGATGTTTGTTTGCACCG 58.514 50.000 0.00 0.00 0.00 4.94
594 607 1.486439 CGTGGATGTTTGTTTGCACC 58.514 50.000 0.00 0.00 31.25 5.01
595 608 0.852136 GCGTGGATGTTTGTTTGCAC 59.148 50.000 0.00 0.00 0.00 4.57
596 609 0.457443 TGCGTGGATGTTTGTTTGCA 59.543 45.000 0.00 0.00 0.00 4.08
597 610 1.782044 ATGCGTGGATGTTTGTTTGC 58.218 45.000 0.00 0.00 0.00 3.68
598 611 2.908009 CGTATGCGTGGATGTTTGTTTG 59.092 45.455 0.00 0.00 0.00 2.93
599 612 2.667171 GCGTATGCGTGGATGTTTGTTT 60.667 45.455 4.81 0.00 40.81 2.83
600 613 1.135803 GCGTATGCGTGGATGTTTGTT 60.136 47.619 4.81 0.00 40.81 2.83
601 614 0.446222 GCGTATGCGTGGATGTTTGT 59.554 50.000 4.81 0.00 40.81 2.83
602 615 3.218721 GCGTATGCGTGGATGTTTG 57.781 52.632 4.81 0.00 40.81 2.93
636 649 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
637 650 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
638 651 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
641 654 4.729918 AAGGGAGCAGGCAAGCCG 62.730 66.667 5.28 2.12 41.95 5.52
642 655 2.283460 AAAGGGAGCAGGCAAGCC 60.283 61.111 2.02 2.02 34.23 4.35
643 656 2.346541 GGAAAGGGAGCAGGCAAGC 61.347 63.158 0.00 0.00 0.00 4.01
644 657 2.042831 CGGAAAGGGAGCAGGCAAG 61.043 63.158 0.00 0.00 0.00 4.01
645 658 2.034066 CGGAAAGGGAGCAGGCAA 59.966 61.111 0.00 0.00 0.00 4.52
646 659 3.249189 ACGGAAAGGGAGCAGGCA 61.249 61.111 0.00 0.00 0.00 4.75
647 660 2.747855 CACGGAAAGGGAGCAGGC 60.748 66.667 0.00 0.00 0.00 4.85
648 661 2.747855 GCACGGAAAGGGAGCAGG 60.748 66.667 0.00 0.00 0.00 4.85
649 662 1.743252 GAGCACGGAAAGGGAGCAG 60.743 63.158 0.00 0.00 0.00 4.24
650 663 2.347490 GAGCACGGAAAGGGAGCA 59.653 61.111 0.00 0.00 0.00 4.26
651 664 2.436824 GGAGCACGGAAAGGGAGC 60.437 66.667 0.00 0.00 0.00 4.70
652 665 1.915078 ATGGGAGCACGGAAAGGGAG 61.915 60.000 0.00 0.00 0.00 4.30
653 666 1.910580 GATGGGAGCACGGAAAGGGA 61.911 60.000 0.00 0.00 0.00 4.20
654 667 1.452108 GATGGGAGCACGGAAAGGG 60.452 63.158 0.00 0.00 0.00 3.95
655 668 1.452108 GGATGGGAGCACGGAAAGG 60.452 63.158 0.00 0.00 0.00 3.11
656 669 1.815421 CGGATGGGAGCACGGAAAG 60.815 63.158 0.00 0.00 0.00 2.62
657 670 2.267642 CGGATGGGAGCACGGAAA 59.732 61.111 0.00 0.00 0.00 3.13
658 671 3.000819 ACGGATGGGAGCACGGAA 61.001 61.111 0.00 0.00 0.00 4.30
659 672 3.770040 CACGGATGGGAGCACGGA 61.770 66.667 0.00 0.00 0.00 4.69
660 673 3.605749 AACACGGATGGGAGCACGG 62.606 63.158 0.00 0.00 0.00 4.94
661 674 2.047274 AACACGGATGGGAGCACG 60.047 61.111 0.00 0.00 0.00 5.34
662 675 1.745489 GGAACACGGATGGGAGCAC 60.745 63.158 0.00 0.00 0.00 4.40
663 676 2.668632 GGAACACGGATGGGAGCA 59.331 61.111 0.00 0.00 0.00 4.26
664 677 2.124695 GGGAACACGGATGGGAGC 60.125 66.667 0.00 0.00 0.00 4.70
665 678 3.399046 TGGGAACACGGATGGGAG 58.601 61.111 0.00 0.00 33.40 4.30
711 724 9.853177 GGGAAGATGATTAGATTAGAAAGGAAA 57.147 33.333 0.00 0.00 0.00 3.13
712 725 8.440771 GGGGAAGATGATTAGATTAGAAAGGAA 58.559 37.037 0.00 0.00 0.00 3.36
713 726 7.017651 GGGGGAAGATGATTAGATTAGAAAGGA 59.982 40.741 0.00 0.00 0.00 3.36
714 727 7.171653 GGGGGAAGATGATTAGATTAGAAAGG 58.828 42.308 0.00 0.00 0.00 3.11
739 752 1.643811 TCCCACCCCCTTAAAATCAGG 59.356 52.381 0.00 0.00 0.00 3.86
740 753 2.623239 GGTCCCACCCCCTTAAAATCAG 60.623 54.545 0.00 0.00 30.04 2.90
741 754 1.359818 GGTCCCACCCCCTTAAAATCA 59.640 52.381 0.00 0.00 30.04 2.57
742 755 1.683938 CGGTCCCACCCCCTTAAAATC 60.684 57.143 0.00 0.00 33.75 2.17
743 756 0.333652 CGGTCCCACCCCCTTAAAAT 59.666 55.000 0.00 0.00 33.75 1.82
744 757 1.769006 CGGTCCCACCCCCTTAAAA 59.231 57.895 0.00 0.00 33.75 1.52
745 758 2.232836 CCGGTCCCACCCCCTTAAA 61.233 63.158 0.00 0.00 33.75 1.52
746 759 2.611486 CCGGTCCCACCCCCTTAA 60.611 66.667 0.00 0.00 33.75 1.85
747 760 3.613674 TCCGGTCCCACCCCCTTA 61.614 66.667 0.00 0.00 33.75 2.69
751 764 3.929723 TAAGGTCCGGTCCCACCCC 62.930 68.421 14.60 0.00 33.75 4.95
752 765 1.276859 AATAAGGTCCGGTCCCACCC 61.277 60.000 14.60 0.00 33.75 4.61
753 766 0.622136 AAATAAGGTCCGGTCCCACC 59.378 55.000 14.60 8.10 34.05 4.61
754 767 2.089201 CAAAATAAGGTCCGGTCCCAC 58.911 52.381 14.60 0.00 0.00 4.61
755 768 1.706305 ACAAAATAAGGTCCGGTCCCA 59.294 47.619 14.60 3.00 0.00 4.37
756 769 2.502142 ACAAAATAAGGTCCGGTCCC 57.498 50.000 14.60 9.44 0.00 4.46
757 770 2.751259 GGAACAAAATAAGGTCCGGTCC 59.249 50.000 10.05 10.05 0.00 4.46
758 771 3.414269 TGGAACAAAATAAGGTCCGGTC 58.586 45.455 0.00 0.00 31.92 4.79
759 772 3.512219 TGGAACAAAATAAGGTCCGGT 57.488 42.857 0.00 0.00 31.92 5.28
773 786 3.367190 CGTGGCATGATTTGATTGGAACA 60.367 43.478 0.00 0.00 0.00 3.18
774 787 3.181397 CGTGGCATGATTTGATTGGAAC 58.819 45.455 0.00 0.00 0.00 3.62
775 788 2.824936 ACGTGGCATGATTTGATTGGAA 59.175 40.909 14.82 0.00 0.00 3.53
776 789 2.445427 ACGTGGCATGATTTGATTGGA 58.555 42.857 14.82 0.00 0.00 3.53
777 790 2.945447 ACGTGGCATGATTTGATTGG 57.055 45.000 14.82 0.00 0.00 3.16
778 791 5.139482 CGTATACGTGGCATGATTTGATTG 58.861 41.667 17.16 0.00 34.11 2.67
779 792 4.213270 CCGTATACGTGGCATGATTTGATT 59.787 41.667 22.87 0.00 37.74 2.57
780 793 3.745975 CCGTATACGTGGCATGATTTGAT 59.254 43.478 22.87 1.47 37.74 2.57
781 794 3.127589 CCGTATACGTGGCATGATTTGA 58.872 45.455 22.87 0.00 37.74 2.69
782 795 2.223144 CCCGTATACGTGGCATGATTTG 59.777 50.000 22.87 3.94 37.74 2.32
783 796 2.103432 TCCCGTATACGTGGCATGATTT 59.897 45.455 22.87 0.00 37.74 2.17
784 797 1.689813 TCCCGTATACGTGGCATGATT 59.310 47.619 22.87 2.57 37.74 2.57
785 798 1.272490 CTCCCGTATACGTGGCATGAT 59.728 52.381 22.87 5.38 37.74 2.45
786 799 0.671796 CTCCCGTATACGTGGCATGA 59.328 55.000 22.87 8.97 37.74 3.07
787 800 0.944311 GCTCCCGTATACGTGGCATG 60.944 60.000 22.87 15.86 37.74 4.06
788 801 1.366366 GCTCCCGTATACGTGGCAT 59.634 57.895 22.87 0.00 37.74 4.40
789 802 1.396607 ATGCTCCCGTATACGTGGCA 61.397 55.000 26.57 26.57 39.15 4.92
790 803 0.944311 CATGCTCCCGTATACGTGGC 60.944 60.000 22.87 21.15 37.74 5.01
791 804 0.319555 CCATGCTCCCGTATACGTGG 60.320 60.000 22.87 21.50 37.74 4.94
792 805 0.671796 TCCATGCTCCCGTATACGTG 59.328 55.000 22.87 12.94 37.74 4.49
793 806 1.272490 CATCCATGCTCCCGTATACGT 59.728 52.381 22.87 1.18 37.74 3.57
794 807 1.404181 CCATCCATGCTCCCGTATACG 60.404 57.143 18.40 18.40 39.44 3.06
795 808 1.899814 TCCATCCATGCTCCCGTATAC 59.100 52.381 0.00 0.00 0.00 1.47
796 809 2.319025 TCCATCCATGCTCCCGTATA 57.681 50.000 0.00 0.00 0.00 1.47
797 810 1.280133 CATCCATCCATGCTCCCGTAT 59.720 52.381 0.00 0.00 0.00 3.06
798 811 0.686789 CATCCATCCATGCTCCCGTA 59.313 55.000 0.00 0.00 0.00 4.02
799 812 1.453235 CATCCATCCATGCTCCCGT 59.547 57.895 0.00 0.00 0.00 5.28
800 813 1.970114 GCATCCATCCATGCTCCCG 60.970 63.158 0.00 0.00 45.03 5.14
801 814 4.092343 GCATCCATCCATGCTCCC 57.908 61.111 0.00 0.00 45.03 4.30
806 819 2.635338 CGCGTGCATCCATCCATG 59.365 61.111 0.00 0.00 0.00 3.66
807 820 2.592574 CCGCGTGCATCCATCCAT 60.593 61.111 4.92 0.00 0.00 3.41
808 821 3.738429 CTCCGCGTGCATCCATCCA 62.738 63.158 4.92 0.00 0.00 3.41
809 822 2.969238 CTCCGCGTGCATCCATCC 60.969 66.667 4.92 0.00 0.00 3.51
810 823 2.969238 CCTCCGCGTGCATCCATC 60.969 66.667 4.92 0.00 0.00 3.51
811 824 4.552365 CCCTCCGCGTGCATCCAT 62.552 66.667 4.92 0.00 0.00 3.41
813 826 4.899239 CTCCCTCCGCGTGCATCC 62.899 72.222 4.92 0.00 0.00 3.51
822 835 3.672295 GACTTGCCTGCTCCCTCCG 62.672 68.421 0.00 0.00 0.00 4.63
823 836 2.250741 GAGACTTGCCTGCTCCCTCC 62.251 65.000 0.00 0.00 0.00 4.30
824 837 1.220477 GAGACTTGCCTGCTCCCTC 59.780 63.158 0.00 0.00 0.00 4.30
825 838 2.654079 CGAGACTTGCCTGCTCCCT 61.654 63.158 0.00 0.00 0.00 4.20
826 839 2.125350 CGAGACTTGCCTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
827 840 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
828 841 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
829 842 2.659610 GGACGAGACTTGCCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
830 843 2.811317 CGGACGAGACTTGCCTGC 60.811 66.667 0.00 0.00 0.00 4.85
831 844 2.811317 GCGGACGAGACTTGCCTG 60.811 66.667 0.00 0.00 0.00 4.85
832 845 2.992114 AGCGGACGAGACTTGCCT 60.992 61.111 0.00 0.00 0.00 4.75
833 846 2.507324 GAGCGGACGAGACTTGCC 60.507 66.667 0.00 0.00 0.00 4.52
834 847 2.876645 CGAGCGGACGAGACTTGC 60.877 66.667 0.00 0.00 35.09 4.01
835 848 2.202492 CCGAGCGGACGAGACTTG 60.202 66.667 2.00 0.00 37.50 3.16
836 849 2.359602 TCCGAGCGGACGAGACTT 60.360 61.111 7.66 0.00 39.76 3.01
918 931 0.107993 CTGTGCCGATGGACATCTGT 60.108 55.000 10.28 0.00 35.72 3.41
920 933 0.977627 TCCTGTGCCGATGGACATCT 60.978 55.000 10.28 0.00 35.72 2.90
924 937 1.139058 ACTTATCCTGTGCCGATGGAC 59.861 52.381 0.00 0.00 32.16 4.02
934 947 4.159879 CCGGTTCAACTCTACTTATCCTGT 59.840 45.833 0.00 0.00 0.00 4.00
946 959 2.280592 ACGGTGCCGGTTCAACTC 60.281 61.111 15.44 0.00 44.69 3.01
951 964 3.116531 GTAGCACGGTGCCGGTTC 61.117 66.667 28.14 11.32 46.52 3.62
1228 1265 2.943653 GTGGCAAGGAACGAACGG 59.056 61.111 0.00 0.00 0.00 4.44
1306 1351 1.632409 CAGCCCCTGCATATACCAGAT 59.368 52.381 4.27 0.00 41.13 2.90
1396 1441 2.503375 CCTCGTCGCCGTGTACAC 60.503 66.667 16.32 16.32 35.01 2.90
1551 1596 1.024046 TCGTGCAACAGTGTTGTGCT 61.024 50.000 31.12 0.00 37.67 4.40
1570 1636 0.254178 AATGATTCTGTCCTGCGGCT 59.746 50.000 0.00 0.00 0.00 5.52
1576 1645 4.920640 ATCGTACGAATGATTCTGTCCT 57.079 40.909 23.56 0.00 0.00 3.85
1577 1646 5.516996 TGTATCGTACGAATGATTCTGTCC 58.483 41.667 23.56 0.00 33.32 4.02
1620 1779 5.853282 CCAAATTCGTAGCAACAGAGAAAAG 59.147 40.000 0.00 0.00 0.00 2.27
1621 1780 5.298276 ACCAAATTCGTAGCAACAGAGAAAA 59.702 36.000 0.00 0.00 0.00 2.29
1633 1792 6.812998 TCAGTAATCCCTACCAAATTCGTAG 58.187 40.000 5.91 5.91 34.24 3.51
1635 1794 5.687166 TCAGTAATCCCTACCAAATTCGT 57.313 39.130 0.00 0.00 0.00 3.85
1636 1795 6.598064 ACTTTCAGTAATCCCTACCAAATTCG 59.402 38.462 0.00 0.00 0.00 3.34
1638 1797 7.947890 TCAACTTTCAGTAATCCCTACCAAATT 59.052 33.333 0.00 0.00 0.00 1.82
1645 1807 5.425539 CCTCCTCAACTTTCAGTAATCCCTA 59.574 44.000 0.00 0.00 0.00 3.53
1671 1833 1.374252 GGCGAGAATGGTCACACGT 60.374 57.895 0.00 0.00 0.00 4.49
1692 1854 1.731969 CGTGGAACCTTCGACCGTC 60.732 63.158 0.00 0.00 33.05 4.79
1704 1866 0.682852 AACCGAACCTGATCGTGGAA 59.317 50.000 10.99 0.00 41.16 3.53
1757 1935 5.401531 TGTGGAGTAACAAGGATCAGTAC 57.598 43.478 0.00 0.00 0.00 2.73
1758 1936 5.163550 CGATGTGGAGTAACAAGGATCAGTA 60.164 44.000 0.00 0.00 32.81 2.74
1759 1937 4.382040 CGATGTGGAGTAACAAGGATCAGT 60.382 45.833 0.00 0.00 32.81 3.41
1761 1939 3.678806 GCGATGTGGAGTAACAAGGATCA 60.679 47.826 0.00 0.00 32.81 2.92
1762 1940 2.866762 GCGATGTGGAGTAACAAGGATC 59.133 50.000 0.00 0.00 32.81 3.36
1763 1941 2.420129 GGCGATGTGGAGTAACAAGGAT 60.420 50.000 0.00 0.00 32.81 3.24
1764 1942 1.066430 GGCGATGTGGAGTAACAAGGA 60.066 52.381 0.00 0.00 32.81 3.36
1772 1968 1.296715 GAACCTGGCGATGTGGAGT 59.703 57.895 0.00 0.00 0.00 3.85
2100 2296 4.631813 ACAGAATTAACTGGTCGCTTGATC 59.368 41.667 0.00 0.00 41.59 2.92
2107 2303 3.369147 CAGCTCACAGAATTAACTGGTCG 59.631 47.826 0.00 0.00 41.59 4.79
2333 2552 2.735134 GCAACCAAGAATTACGAGACGT 59.265 45.455 0.00 0.00 44.35 4.34
2360 2584 3.200593 GGCGACCTCTGCATGCAG 61.201 66.667 36.80 36.80 44.86 4.41
2568 2793 2.593257 GAAGAAGAGGTAACCGTCGTG 58.407 52.381 0.00 0.00 37.17 4.35
2569 2794 1.198637 CGAAGAAGAGGTAACCGTCGT 59.801 52.381 0.00 0.00 37.17 4.34
2655 2880 0.036671 AACTAGGAAGAAACCGCCGG 60.037 55.000 0.00 0.00 34.73 6.13
2685 2910 4.617959 GATGGCAATGGATGATGAAACTG 58.382 43.478 0.00 0.00 0.00 3.16
2701 2927 3.734463 TCGCTTTATTATTCCGATGGCA 58.266 40.909 0.00 0.00 0.00 4.92
2743 2981 1.225855 TGAATGACACAGTGCGGAAC 58.774 50.000 0.00 0.00 0.00 3.62
2860 3432 0.947244 AGCCACAGAAGCTCAAAACG 59.053 50.000 0.00 0.00 34.91 3.60
2864 3436 1.601759 GGCAGCCACAGAAGCTCAA 60.602 57.895 6.55 0.00 38.95 3.02
2868 3440 0.964358 AATCAGGCAGCCACAGAAGC 60.964 55.000 15.80 0.00 0.00 3.86
2872 3444 1.250328 TTTCAATCAGGCAGCCACAG 58.750 50.000 15.80 2.88 0.00 3.66
3039 3619 5.046591 AGTTGTCAGGAAGAATTATCCGACA 60.047 40.000 20.61 20.61 42.78 4.35
3138 3743 6.498304 ACATCGAGGTAATGCAATTGAAATC 58.502 36.000 10.34 0.00 36.99 2.17
3238 3843 3.355378 CACTCCAAGCCCATTGTGATTA 58.645 45.455 0.00 0.00 37.17 1.75
3255 3861 1.338484 TGAATCAGCTCAGTGGCACTC 60.338 52.381 19.13 6.97 34.17 3.51
3289 3895 2.840651 AGCTGGCCTATTTGACTGTAGT 59.159 45.455 3.32 0.00 0.00 2.73
3325 3932 1.101049 CACAGTTTGGTTCCCTGCGT 61.101 55.000 0.00 0.00 0.00 5.24
3364 3971 7.062605 GGCATCTTGAACTCATGTTGTTAATTG 59.937 37.037 6.79 3.87 36.39 2.32
3406 4013 7.911651 TGTTTATATGCCTCCATTTCCAAAAA 58.088 30.769 0.00 0.00 32.85 1.94
3407 4014 7.487822 TGTTTATATGCCTCCATTTCCAAAA 57.512 32.000 0.00 0.00 32.85 2.44
3408 4015 7.499292 CATGTTTATATGCCTCCATTTCCAAA 58.501 34.615 0.00 0.00 32.85 3.28
3409 4016 6.462768 GCATGTTTATATGCCTCCATTTCCAA 60.463 38.462 0.48 0.00 45.93 3.53
3410 4017 5.010922 GCATGTTTATATGCCTCCATTTCCA 59.989 40.000 0.48 0.00 45.93 3.53
3411 4018 5.473039 GCATGTTTATATGCCTCCATTTCC 58.527 41.667 0.48 0.00 45.93 3.13
3430 4037 7.042950 TGGATTCTCATGTTTTTATTGGCATG 58.957 34.615 0.00 0.00 39.81 4.06
3485 4092 5.163561 TGTCAGGACATTTTTCTTCCAACAC 60.164 40.000 0.00 0.00 36.21 3.32
3488 4095 6.537453 TTTGTCAGGACATTTTTCTTCCAA 57.463 33.333 2.52 0.00 41.52 3.53
3500 4107 5.159273 TGTATAGCACATTTGTCAGGACA 57.841 39.130 0.00 0.00 33.78 4.02
3501 4108 5.643777 AGTTGTATAGCACATTTGTCAGGAC 59.356 40.000 0.00 0.00 36.90 3.85
3502 4109 5.643348 CAGTTGTATAGCACATTTGTCAGGA 59.357 40.000 0.00 0.00 36.90 3.86
3503 4110 5.674569 GCAGTTGTATAGCACATTTGTCAGG 60.675 44.000 0.00 0.00 36.90 3.86
3505 4112 4.155826 GGCAGTTGTATAGCACATTTGTCA 59.844 41.667 0.00 0.00 36.90 3.58
3506 4113 4.662145 GGCAGTTGTATAGCACATTTGTC 58.338 43.478 0.00 0.00 36.90 3.18
3509 4118 3.605634 TCGGCAGTTGTATAGCACATTT 58.394 40.909 0.00 0.00 36.90 2.32
3513 4122 3.978687 AGTATCGGCAGTTGTATAGCAC 58.021 45.455 0.00 0.00 0.00 4.40
3574 4183 1.003118 AGCAGGCCGTCAACTATTTCA 59.997 47.619 0.00 0.00 0.00 2.69
3651 4265 6.313905 CCTGTAGCTCGTTCAGTTGATTTATT 59.686 38.462 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.