Multiple sequence alignment - TraesCS2B01G195400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G195400 chr2B 100.000 6389 0 0 1 6389 172985609 172979221 0.000000e+00 11799.0
1 TraesCS2B01G195400 chr2B 93.496 123 8 0 410 532 587232209 587232331 3.930000e-42 183.0
2 TraesCS2B01G195400 chr2B 86.486 74 8 2 419 491 549565065 549564993 5.310000e-11 80.5
3 TraesCS2B01G195400 chr2B 96.875 32 1 0 2498 2529 67790912 67790943 3.000000e-03 54.7
4 TraesCS2B01G195400 chr2D 91.917 5926 293 77 563 6389 120107970 120102132 0.000000e+00 8118.0
5 TraesCS2B01G195400 chr2D 86.735 98 11 2 2478 2574 571076639 571076735 2.440000e-19 108.0
6 TraesCS2B01G195400 chr2D 78.571 126 18 5 567 683 239722252 239722127 2.470000e-09 75.0
7 TraesCS2B01G195400 chr2A 92.356 5102 239 66 714 5752 123552861 123547848 0.000000e+00 7121.0
8 TraesCS2B01G195400 chr2A 94.295 298 12 4 1 295 599402354 599402059 9.770000e-123 451.0
9 TraesCS2B01G195400 chr2A 94.483 290 16 0 1 290 69309598 69309309 1.260000e-121 448.0
10 TraesCS2B01G195400 chr2A 88.515 357 15 4 6032 6387 123533795 123533464 5.960000e-110 409.0
11 TraesCS2B01G195400 chr2A 92.063 126 10 0 410 535 26851674 26851549 1.830000e-40 178.0
12 TraesCS2B01G195400 chr2A 86.667 150 20 0 568 717 123553317 123553168 3.960000e-37 167.0
13 TraesCS2B01G195400 chr2A 95.890 73 3 0 5746 5818 123533948 123533876 1.130000e-22 119.0
14 TraesCS2B01G195400 chr2A 96.154 52 2 0 342 393 40936965 40937016 1.140000e-12 86.1
15 TraesCS2B01G195400 chr2A 97.826 46 1 0 5839 5884 123533878 123533833 5.310000e-11 80.5
16 TraesCS2B01G195400 chr7A 95.775 284 11 1 1 283 247378511 247378228 2.100000e-124 457.0
17 TraesCS2B01G195400 chr7A 94.276 297 15 2 1 295 420831354 420831058 2.720000e-123 453.0
18 TraesCS2B01G195400 chr7A 80.342 351 54 10 5652 5990 675318168 675318515 1.060000e-62 252.0
19 TraesCS2B01G195400 chr7A 84.892 139 18 2 395 533 648677121 648676986 3.110000e-28 137.0
20 TraesCS2B01G195400 chr7A 95.349 43 1 1 2478 2520 211413919 211413878 4.130000e-07 67.6
21 TraesCS2B01G195400 chr4A 95.775 284 11 1 1 284 226786110 226785828 2.100000e-124 457.0
22 TraesCS2B01G195400 chr4A 94.810 289 13 1 1 287 396744199 396744487 3.510000e-122 449.0
23 TraesCS2B01G195400 chr4A 91.613 155 13 0 412 566 658949111 658949265 1.400000e-51 215.0
24 TraesCS2B01G195400 chr4A 100.000 32 0 0 646 677 669577233 669577264 6.920000e-05 60.2
25 TraesCS2B01G195400 chr6A 94.792 288 15 0 1 288 290551023 290551310 3.510000e-122 449.0
26 TraesCS2B01G195400 chr6A 93.603 297 17 2 1 295 507400961 507400665 5.880000e-120 442.0
27 TraesCS2B01G195400 chr1A 94.425 287 16 0 1 287 100101110 100101396 5.880000e-120 442.0
28 TraesCS2B01G195400 chr1A 96.078 51 2 0 343 393 99289553 99289603 4.100000e-12 84.2
29 TraesCS2B01G195400 chr5D 91.667 132 10 1 411 541 566048283 566048414 1.410000e-41 182.0
30 TraesCS2B01G195400 chr5D 87.156 109 13 1 6276 6384 9573055 9572948 8.700000e-24 122.0
31 TraesCS2B01G195400 chr5D 86.517 89 10 2 556 644 553900760 553900674 5.270000e-16 97.1
32 TraesCS2B01G195400 chr5D 94.340 53 3 0 341 393 422766667 422766719 1.480000e-11 82.4
33 TraesCS2B01G195400 chr5D 97.500 40 0 1 5807 5845 9573430 9573391 4.130000e-07 67.6
34 TraesCS2B01G195400 chr5D 100.000 33 0 0 646 678 413585385 413585353 1.920000e-05 62.1
35 TraesCS2B01G195400 chr5D 87.755 49 6 0 2464 2512 448333811 448333763 2.490000e-04 58.4
36 TraesCS2B01G195400 chr5D 96.970 33 1 0 646 678 13912971 13912939 8.950000e-04 56.5
37 TraesCS2B01G195400 chr5D 97.059 34 0 1 614 646 30554242 30554209 8.950000e-04 56.5
38 TraesCS2B01G195400 chr3D 94.068 118 7 0 416 533 337959509 337959626 5.090000e-41 180.0
39 TraesCS2B01G195400 chr3D 97.059 34 0 1 614 646 578280745 578280712 8.950000e-04 56.5
40 TraesCS2B01G195400 chr7D 91.473 129 11 0 411 539 120249289 120249161 1.830000e-40 178.0
41 TraesCS2B01G195400 chr7D 84.483 174 23 4 408 579 625854848 625854677 1.100000e-37 169.0
42 TraesCS2B01G195400 chr7D 83.824 136 19 3 397 532 536300051 536300183 6.720000e-25 126.0
43 TraesCS2B01G195400 chr7D 86.022 93 13 0 400 492 2337850 2337942 4.080000e-17 100.0
44 TraesCS2B01G195400 chr1B 92.683 123 9 0 415 537 451733236 451733358 1.830000e-40 178.0
45 TraesCS2B01G195400 chr1B 81.690 142 25 1 391 532 620130425 620130565 4.050000e-22 117.0
46 TraesCS2B01G195400 chr6D 90.909 132 11 1 408 539 9063697 9063567 6.580000e-40 176.0
47 TraesCS2B01G195400 chr6D 82.203 118 11 3 563 671 429354433 429354549 6.820000e-15 93.5
48 TraesCS2B01G195400 chr6D 94.340 53 3 0 341 393 385666127 385666075 1.480000e-11 82.4
49 TraesCS2B01G195400 chr6D 87.324 71 9 0 576 646 464703815 464703885 1.480000e-11 82.4
50 TraesCS2B01G195400 chr3A 85.185 135 17 2 395 529 543677519 543677650 1.120000e-27 135.0
51 TraesCS2B01G195400 chr7B 88.043 92 9 2 2495 2586 496343318 496343229 2.440000e-19 108.0
52 TraesCS2B01G195400 chr7B 97.059 34 0 1 614 646 699542545 699542512 8.950000e-04 56.5
53 TraesCS2B01G195400 chr7B 100.000 28 0 0 646 673 86639239 86639266 1.200000e-02 52.8
54 TraesCS2B01G195400 chr4B 89.610 77 8 0 415 491 9949512 9949436 1.470000e-16 99.0
55 TraesCS2B01G195400 chr4D 85.417 96 10 4 2471 2563 169117087 169116993 5.270000e-16 97.1
56 TraesCS2B01G195400 chr4D 81.553 103 12 5 2478 2574 451803543 451803442 1.910000e-10 78.7
57 TraesCS2B01G195400 chr3B 82.857 105 16 2 2472 2575 121468151 121468048 6.820000e-15 93.5
58 TraesCS2B01G195400 chr3B 100.000 28 0 0 619 646 431589871 431589898 1.200000e-02 52.8
59 TraesCS2B01G195400 chrUn 94.340 53 3 0 341 393 42363513 42363461 1.480000e-11 82.4
60 TraesCS2B01G195400 chrUn 94.340 53 3 0 341 393 42383702 42383650 1.480000e-11 82.4
61 TraesCS2B01G195400 chrUn 94.340 53 3 0 341 393 42617640 42617588 1.480000e-11 82.4
62 TraesCS2B01G195400 chrUn 94.340 53 3 0 341 393 393137865 393137813 1.480000e-11 82.4
63 TraesCS2B01G195400 chrUn 94.340 53 3 0 341 393 479537897 479537845 1.480000e-11 82.4
64 TraesCS2B01G195400 chr5B 100.000 31 0 0 648 678 163251596 163251626 2.490000e-04 58.4
65 TraesCS2B01G195400 chr1D 97.059 34 1 0 648 681 126207137 126207104 2.490000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G195400 chr2B 172979221 172985609 6388 True 11799 11799 100.0000 1 6389 1 chr2B.!!$R1 6388
1 TraesCS2B01G195400 chr2D 120102132 120107970 5838 True 8118 8118 91.9170 563 6389 1 chr2D.!!$R1 5826
2 TraesCS2B01G195400 chr2A 123547848 123553317 5469 True 3644 7121 89.5115 568 5752 2 chr2A.!!$R5 5184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 435 0.032813 TACTCCCTCGGTCCGGAAAT 60.033 55.0 5.23 0.0 0.00 2.17 F
437 438 0.032813 TCCCTCGGTCCGGAAATACT 60.033 55.0 5.23 0.0 0.00 2.12 F
1367 1691 0.036765 AGCGGTTGTTTATCGAGCCA 60.037 50.0 0.00 0.0 0.00 4.75 F
1405 1729 0.320247 GCTGTCCTGTGTGTCTCCAG 60.320 60.0 0.00 0.0 0.00 3.86 F
1528 1853 0.538287 AAAGGAGCAGGGCAAGTGAC 60.538 55.0 0.00 0.0 0.00 3.67 F
2734 3070 0.539669 TGACTGAGGCACTTCTCCGA 60.540 55.0 0.00 0.0 41.55 4.55 F
3026 3364 1.799933 ATAGCCAGGAGCAGCTACTT 58.200 50.0 3.56 0.0 43.97 2.24 F
4288 4636 0.039165 GCACCCACTTAAAGCAGCAC 60.039 55.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1391 1715 0.034059 GGACACTGGAGACACACAGG 59.966 60.000 0.00 0.0 39.00 4.00 R
1823 2151 1.009829 GCATTAGCAGTCTTCCACCG 58.990 55.000 0.00 0.0 41.58 4.94 R
2719 3055 0.967887 CCTCTCGGAGAAGTGCCTCA 60.968 60.000 9.32 0.0 34.09 3.86 R
3138 3476 1.409427 GTTGTATCCTCCCTCTGACCG 59.591 57.143 0.00 0.0 0.00 4.79 R
3478 3818 0.467844 ACAAGCACCACTGCCAATCA 60.468 50.000 0.00 0.0 45.53 2.57 R
4269 4617 0.039165 GTGCTGCTTTAAGTGGGTGC 60.039 55.000 0.00 0.0 0.00 5.01 R
4813 5193 1.068333 CCAAGTGCATGGAAGAAACGG 60.068 52.381 0.00 0.0 43.54 4.44 R
6229 6662 0.733150 GGAAACAGAGGCGCATAACC 59.267 55.000 10.83 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 9.574516 ACTGTAAATTTTCTTGTCTTATCACCT 57.425 29.630 0.00 0.00 0.00 4.00
215 216 3.003394 TCGTAAGATTACCTCGGGTGA 57.997 47.619 5.90 0.00 45.01 4.02
216 217 3.355378 TCGTAAGATTACCTCGGGTGAA 58.645 45.455 5.90 0.00 45.01 3.18
217 218 3.956199 TCGTAAGATTACCTCGGGTGAAT 59.044 43.478 5.90 0.00 45.01 2.57
218 219 5.132502 TCGTAAGATTACCTCGGGTGAATA 58.867 41.667 5.90 0.00 45.01 1.75
219 220 5.593909 TCGTAAGATTACCTCGGGTGAATAA 59.406 40.000 5.90 0.00 45.01 1.40
220 221 6.266103 TCGTAAGATTACCTCGGGTGAATAAT 59.734 38.462 5.90 0.00 45.01 1.28
221 222 7.448161 TCGTAAGATTACCTCGGGTGAATAATA 59.552 37.037 5.90 0.00 45.01 0.98
222 223 8.084073 CGTAAGATTACCTCGGGTGAATAATAA 58.916 37.037 5.90 0.00 36.23 1.40
223 224 9.201127 GTAAGATTACCTCGGGTGAATAATAAC 57.799 37.037 5.90 0.00 36.19 1.89
224 225 7.613551 AGATTACCTCGGGTGAATAATAACT 57.386 36.000 5.90 0.00 36.19 2.24
225 226 8.030913 AGATTACCTCGGGTGAATAATAACTT 57.969 34.615 5.90 0.00 36.19 2.66
226 227 9.151177 AGATTACCTCGGGTGAATAATAACTTA 57.849 33.333 5.90 0.00 36.19 2.24
227 228 9.939802 GATTACCTCGGGTGAATAATAACTTAT 57.060 33.333 5.90 0.00 36.19 1.73
240 241 9.998106 GAATAATAACTTATTCTGCACCCTAGA 57.002 33.333 9.69 0.00 45.14 2.43
242 243 9.950496 ATAATAACTTATTCTGCACCCTAGATG 57.050 33.333 0.00 0.00 0.00 2.90
243 244 5.957771 AACTTATTCTGCACCCTAGATGA 57.042 39.130 0.00 0.00 0.00 2.92
244 245 6.506538 AACTTATTCTGCACCCTAGATGAT 57.493 37.500 0.00 0.00 0.00 2.45
245 246 5.862845 ACTTATTCTGCACCCTAGATGATG 58.137 41.667 0.00 0.00 0.00 3.07
246 247 5.604231 ACTTATTCTGCACCCTAGATGATGA 59.396 40.000 0.00 0.00 0.00 2.92
247 248 6.100279 ACTTATTCTGCACCCTAGATGATGAA 59.900 38.462 0.00 0.00 0.00 2.57
248 249 5.579753 ATTCTGCACCCTAGATGATGAAT 57.420 39.130 0.00 1.12 0.00 2.57
249 250 6.692849 ATTCTGCACCCTAGATGATGAATA 57.307 37.500 0.00 0.00 0.00 1.75
250 251 5.735285 TCTGCACCCTAGATGATGAATAG 57.265 43.478 0.00 0.00 0.00 1.73
251 252 5.150715 TCTGCACCCTAGATGATGAATAGT 58.849 41.667 0.00 0.00 0.00 2.12
252 253 6.314917 TCTGCACCCTAGATGATGAATAGTA 58.685 40.000 0.00 0.00 0.00 1.82
253 254 6.782494 TCTGCACCCTAGATGATGAATAGTAA 59.218 38.462 0.00 0.00 0.00 2.24
254 255 6.759272 TGCACCCTAGATGATGAATAGTAAC 58.241 40.000 0.00 0.00 0.00 2.50
255 256 6.326323 TGCACCCTAGATGATGAATAGTAACA 59.674 38.462 0.00 0.00 0.00 2.41
256 257 6.647067 GCACCCTAGATGATGAATAGTAACAC 59.353 42.308 0.00 0.00 0.00 3.32
257 258 7.472100 GCACCCTAGATGATGAATAGTAACACT 60.472 40.741 0.00 0.00 0.00 3.55
258 259 9.078990 CACCCTAGATGATGAATAGTAACACTA 57.921 37.037 0.00 0.00 34.82 2.74
259 260 9.830186 ACCCTAGATGATGAATAGTAACACTAT 57.170 33.333 0.00 0.00 42.86 2.12
340 341 9.154847 AGTTCTTTTAAATATTTCAATGCAGGC 57.845 29.630 3.39 0.00 0.00 4.85
341 342 8.390354 GTTCTTTTAAATATTTCAATGCAGGCC 58.610 33.333 3.39 0.00 0.00 5.19
342 343 7.047271 TCTTTTAAATATTTCAATGCAGGCCC 58.953 34.615 3.39 0.00 0.00 5.80
343 344 6.558488 TTTAAATATTTCAATGCAGGCCCT 57.442 33.333 3.39 0.00 0.00 5.19
344 345 4.677673 AAATATTTCAATGCAGGCCCTC 57.322 40.909 0.00 0.00 0.00 4.30
345 346 2.071778 TATTTCAATGCAGGCCCTCC 57.928 50.000 0.00 0.00 0.00 4.30
346 347 1.039233 ATTTCAATGCAGGCCCTCCG 61.039 55.000 0.00 0.00 37.47 4.63
347 348 2.424842 TTTCAATGCAGGCCCTCCGT 62.425 55.000 0.00 0.00 37.47 4.69
348 349 2.361610 CAATGCAGGCCCTCCGTT 60.362 61.111 0.00 0.00 37.47 4.44
349 350 1.978617 CAATGCAGGCCCTCCGTTT 60.979 57.895 0.00 0.00 37.47 3.60
350 351 1.228862 AATGCAGGCCCTCCGTTTT 60.229 52.632 0.00 0.00 37.47 2.43
351 352 0.039035 AATGCAGGCCCTCCGTTTTA 59.961 50.000 0.00 0.00 37.47 1.52
352 353 0.039035 ATGCAGGCCCTCCGTTTTAA 59.961 50.000 0.00 0.00 37.47 1.52
353 354 0.178987 TGCAGGCCCTCCGTTTTAAA 60.179 50.000 0.00 0.00 37.47 1.52
354 355 0.963225 GCAGGCCCTCCGTTTTAAAA 59.037 50.000 0.00 0.00 37.47 1.52
355 356 1.548719 GCAGGCCCTCCGTTTTAAAAT 59.451 47.619 3.52 0.00 37.47 1.82
356 357 2.756207 GCAGGCCCTCCGTTTTAAAATA 59.244 45.455 3.52 0.00 37.47 1.40
357 358 3.181490 GCAGGCCCTCCGTTTTAAAATAG 60.181 47.826 3.52 1.99 37.47 1.73
358 359 4.266714 CAGGCCCTCCGTTTTAAAATAGA 58.733 43.478 3.52 3.61 37.47 1.98
359 360 4.887655 CAGGCCCTCCGTTTTAAAATAGAT 59.112 41.667 3.52 0.00 37.47 1.98
360 361 4.887655 AGGCCCTCCGTTTTAAAATAGATG 59.112 41.667 3.52 2.01 37.47 2.90
361 362 4.885325 GGCCCTCCGTTTTAAAATAGATGA 59.115 41.667 3.52 0.00 0.00 2.92
362 363 5.220989 GGCCCTCCGTTTTAAAATAGATGAC 60.221 44.000 3.52 0.00 0.00 3.06
363 364 5.589050 GCCCTCCGTTTTAAAATAGATGACT 59.411 40.000 3.52 0.00 0.00 3.41
364 365 6.764560 GCCCTCCGTTTTAAAATAGATGACTA 59.235 38.462 3.52 0.00 0.00 2.59
365 366 7.281549 GCCCTCCGTTTTAAAATAGATGACTAA 59.718 37.037 3.52 0.00 32.04 2.24
366 367 9.169592 CCCTCCGTTTTAAAATAGATGACTAAA 57.830 33.333 3.52 0.00 32.04 1.85
367 368 9.983804 CCTCCGTTTTAAAATAGATGACTAAAC 57.016 33.333 3.52 0.00 32.04 2.01
404 405 7.743520 TTAGTACAAAGTTTTTCTTTTGCGG 57.256 32.000 0.00 0.00 42.95 5.69
405 406 5.956642 AGTACAAAGTTTTTCTTTTGCGGA 58.043 33.333 0.00 0.00 42.95 5.54
406 407 6.391537 AGTACAAAGTTTTTCTTTTGCGGAA 58.608 32.000 0.00 0.00 42.95 4.30
407 408 6.869388 AGTACAAAGTTTTTCTTTTGCGGAAA 59.131 30.769 0.00 0.00 42.95 3.13
408 409 6.546972 ACAAAGTTTTTCTTTTGCGGAAAA 57.453 29.167 14.37 14.37 42.95 2.29
409 410 6.367421 ACAAAGTTTTTCTTTTGCGGAAAAC 58.633 32.000 11.06 1.09 42.95 2.43
410 411 6.203915 ACAAAGTTTTTCTTTTGCGGAAAACT 59.796 30.769 11.06 3.58 42.95 2.66
411 412 6.795098 AAGTTTTTCTTTTGCGGAAAACTT 57.205 29.167 11.06 15.90 40.77 2.66
412 413 6.795098 AGTTTTTCTTTTGCGGAAAACTTT 57.205 29.167 11.06 0.00 40.77 2.66
413 414 7.892778 AGTTTTTCTTTTGCGGAAAACTTTA 57.107 28.000 11.06 0.00 40.77 1.85
414 415 7.959733 AGTTTTTCTTTTGCGGAAAACTTTAG 58.040 30.769 11.06 1.15 40.77 1.85
415 416 7.601130 AGTTTTTCTTTTGCGGAAAACTTTAGT 59.399 29.630 11.06 0.00 40.77 2.24
416 417 8.862074 GTTTTTCTTTTGCGGAAAACTTTAGTA 58.138 29.630 11.06 0.00 40.77 1.82
417 418 7.974243 TTTCTTTTGCGGAAAACTTTAGTAC 57.026 32.000 11.06 0.00 30.94 2.73
418 419 6.930667 TCTTTTGCGGAAAACTTTAGTACT 57.069 33.333 11.06 0.00 0.00 2.73
419 420 6.951643 TCTTTTGCGGAAAACTTTAGTACTC 58.048 36.000 11.06 0.00 0.00 2.59
420 421 5.678132 TTTGCGGAAAACTTTAGTACTCC 57.322 39.130 0.00 0.00 0.00 3.85
421 422 3.667360 TGCGGAAAACTTTAGTACTCCC 58.333 45.455 0.00 0.00 0.00 4.30
422 423 3.325716 TGCGGAAAACTTTAGTACTCCCT 59.674 43.478 0.00 0.00 0.00 4.20
423 424 3.931468 GCGGAAAACTTTAGTACTCCCTC 59.069 47.826 0.00 0.00 0.00 4.30
424 425 4.171754 CGGAAAACTTTAGTACTCCCTCG 58.828 47.826 0.00 0.00 0.00 4.63
425 426 4.502016 GGAAAACTTTAGTACTCCCTCGG 58.498 47.826 0.00 0.00 0.00 4.63
426 427 4.020751 GGAAAACTTTAGTACTCCCTCGGT 60.021 45.833 0.00 0.00 0.00 4.69
427 428 4.797800 AAACTTTAGTACTCCCTCGGTC 57.202 45.455 0.00 0.00 0.00 4.79
428 429 2.732763 ACTTTAGTACTCCCTCGGTCC 58.267 52.381 0.00 0.00 0.00 4.46
429 430 1.674962 CTTTAGTACTCCCTCGGTCCG 59.325 57.143 4.39 4.39 0.00 4.79
430 431 0.107017 TTAGTACTCCCTCGGTCCGG 60.107 60.000 12.29 0.00 0.00 5.14
431 432 0.982852 TAGTACTCCCTCGGTCCGGA 60.983 60.000 12.29 0.00 0.00 5.14
432 433 1.379044 GTACTCCCTCGGTCCGGAA 60.379 63.158 5.23 0.00 0.00 4.30
433 434 0.967380 GTACTCCCTCGGTCCGGAAA 60.967 60.000 5.23 0.00 0.00 3.13
434 435 0.032813 TACTCCCTCGGTCCGGAAAT 60.033 55.000 5.23 0.00 0.00 2.17
435 436 0.032813 ACTCCCTCGGTCCGGAAATA 60.033 55.000 5.23 0.00 0.00 1.40
436 437 0.388294 CTCCCTCGGTCCGGAAATAC 59.612 60.000 5.23 0.00 0.00 1.89
437 438 0.032813 TCCCTCGGTCCGGAAATACT 60.033 55.000 5.23 0.00 0.00 2.12
438 439 0.828677 CCCTCGGTCCGGAAATACTT 59.171 55.000 5.23 0.00 0.00 2.24
439 440 1.472728 CCCTCGGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 0.00 3.16
440 441 1.206371 CCTCGGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 0.00 3.16
441 442 2.537401 CTCGGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 0.00 3.18
442 443 1.205417 TCGGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 0.00 4.02
443 444 1.066716 CGGTCCGGAAATACTTGTCCA 60.067 52.381 5.23 0.00 33.10 4.02
444 445 2.613474 CGGTCCGGAAATACTTGTCCAA 60.613 50.000 5.23 0.00 33.10 3.53
445 446 3.007635 GGTCCGGAAATACTTGTCCAAG 58.992 50.000 5.23 5.51 43.79 3.61
446 447 3.007635 GTCCGGAAATACTTGTCCAAGG 58.992 50.000 5.23 0.00 42.53 3.61
447 448 2.640826 TCCGGAAATACTTGTCCAAGGT 59.359 45.455 0.00 0.82 42.53 3.50
448 449 3.839490 TCCGGAAATACTTGTCCAAGGTA 59.161 43.478 0.00 2.80 42.53 3.08
449 450 4.472108 TCCGGAAATACTTGTCCAAGGTAT 59.528 41.667 0.00 4.71 42.53 2.73
450 451 5.662208 TCCGGAAATACTTGTCCAAGGTATA 59.338 40.000 0.00 0.00 42.53 1.47
451 452 5.989777 CCGGAAATACTTGTCCAAGGTATAG 59.010 44.000 11.45 0.00 42.53 1.31
452 453 6.183360 CCGGAAATACTTGTCCAAGGTATAGA 60.183 42.308 11.45 0.00 42.53 1.98
453 454 7.442656 CGGAAATACTTGTCCAAGGTATAGAT 58.557 38.462 11.45 0.00 42.53 1.98
454 455 7.385205 CGGAAATACTTGTCCAAGGTATAGATG 59.615 40.741 11.45 0.00 42.53 2.90
455 456 8.211629 GGAAATACTTGTCCAAGGTATAGATGT 58.788 37.037 11.45 0.00 42.53 3.06
459 460 9.830186 ATACTTGTCCAAGGTATAGATGTATCT 57.170 33.333 11.45 0.00 42.53 1.98
461 462 9.303116 ACTTGTCCAAGGTATAGATGTATCTAG 57.697 37.037 11.45 0.00 41.15 2.43
462 463 9.521841 CTTGTCCAAGGTATAGATGTATCTAGA 57.478 37.037 7.57 0.00 37.49 2.43
464 465 9.467796 TGTCCAAGGTATAGATGTATCTAGATG 57.532 37.037 15.79 0.00 42.20 2.90
465 466 9.469097 GTCCAAGGTATAGATGTATCTAGATGT 57.531 37.037 15.79 1.25 42.20 3.06
511 512 9.840427 CCATTTTTATTCATTTCTACGACAAGT 57.160 29.630 0.00 0.00 0.00 3.16
518 519 6.880822 TCATTTCTACGACAAGTATTTCCG 57.119 37.500 0.00 0.00 34.34 4.30
519 520 5.808540 TCATTTCTACGACAAGTATTTCCGG 59.191 40.000 0.00 0.00 34.34 5.14
520 521 5.389859 TTTCTACGACAAGTATTTCCGGA 57.610 39.130 0.00 0.00 34.34 5.14
521 522 4.361451 TCTACGACAAGTATTTCCGGAC 57.639 45.455 1.83 0.00 34.34 4.79
522 523 3.758023 TCTACGACAAGTATTTCCGGACA 59.242 43.478 1.83 0.00 34.34 4.02
523 524 2.955614 ACGACAAGTATTTCCGGACAG 58.044 47.619 1.83 0.00 0.00 3.51
524 525 2.559668 ACGACAAGTATTTCCGGACAGA 59.440 45.455 1.83 0.00 0.00 3.41
525 526 3.179830 CGACAAGTATTTCCGGACAGAG 58.820 50.000 1.83 0.00 0.00 3.35
526 527 3.522553 GACAAGTATTTCCGGACAGAGG 58.477 50.000 1.83 0.00 0.00 3.69
527 528 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
528 529 2.500098 CAAGTATTTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
529 530 2.389715 AGTATTTCCGGACAGAGGGAG 58.610 52.381 1.83 0.00 33.01 4.30
530 531 2.108970 GTATTTCCGGACAGAGGGAGT 58.891 52.381 1.83 0.00 33.01 3.85
531 532 2.544844 ATTTCCGGACAGAGGGAGTA 57.455 50.000 1.83 0.00 33.01 2.59
532 533 1.553706 TTTCCGGACAGAGGGAGTAC 58.446 55.000 1.83 0.00 33.01 2.73
533 534 0.406750 TTCCGGACAGAGGGAGTACA 59.593 55.000 1.83 0.00 33.01 2.90
534 535 0.406750 TCCGGACAGAGGGAGTACAA 59.593 55.000 0.00 0.00 0.00 2.41
535 536 1.203087 TCCGGACAGAGGGAGTACAAA 60.203 52.381 0.00 0.00 0.00 2.83
536 537 1.204941 CCGGACAGAGGGAGTACAAAG 59.795 57.143 0.00 0.00 0.00 2.77
537 538 1.893801 CGGACAGAGGGAGTACAAAGT 59.106 52.381 0.00 0.00 0.00 2.66
538 539 2.299297 CGGACAGAGGGAGTACAAAGTT 59.701 50.000 0.00 0.00 0.00 2.66
539 540 3.665190 GGACAGAGGGAGTACAAAGTTG 58.335 50.000 0.00 0.00 0.00 3.16
540 541 3.323979 GGACAGAGGGAGTACAAAGTTGA 59.676 47.826 0.00 0.00 0.00 3.18
541 542 4.561105 GACAGAGGGAGTACAAAGTTGAG 58.439 47.826 0.00 0.00 0.00 3.02
542 543 3.967987 ACAGAGGGAGTACAAAGTTGAGT 59.032 43.478 0.00 0.00 0.00 3.41
543 544 4.039366 ACAGAGGGAGTACAAAGTTGAGTC 59.961 45.833 0.00 0.00 0.00 3.36
544 545 4.039245 CAGAGGGAGTACAAAGTTGAGTCA 59.961 45.833 0.00 0.00 0.00 3.41
545 546 4.841246 AGAGGGAGTACAAAGTTGAGTCAT 59.159 41.667 0.00 0.00 0.00 3.06
546 547 5.046950 AGAGGGAGTACAAAGTTGAGTCATC 60.047 44.000 0.00 0.00 0.00 2.92
547 548 4.841246 AGGGAGTACAAAGTTGAGTCATCT 59.159 41.667 0.00 0.00 0.00 2.90
548 549 6.017192 AGGGAGTACAAAGTTGAGTCATCTA 58.983 40.000 4.14 0.00 0.00 1.98
549 550 6.670027 AGGGAGTACAAAGTTGAGTCATCTAT 59.330 38.462 4.14 0.00 0.00 1.98
550 551 6.981559 GGGAGTACAAAGTTGAGTCATCTATC 59.018 42.308 4.14 0.00 0.00 2.08
551 552 7.147811 GGGAGTACAAAGTTGAGTCATCTATCT 60.148 40.741 4.14 0.35 0.00 1.98
552 553 8.254508 GGAGTACAAAGTTGAGTCATCTATCTT 58.745 37.037 4.14 0.00 0.00 2.40
553 554 8.994429 AGTACAAAGTTGAGTCATCTATCTTG 57.006 34.615 4.14 8.00 0.00 3.02
554 555 8.807118 AGTACAAAGTTGAGTCATCTATCTTGA 58.193 33.333 15.99 3.46 0.00 3.02
555 556 9.424319 GTACAAAGTTGAGTCATCTATCTTGAA 57.576 33.333 15.99 0.00 0.00 2.69
556 557 8.908786 ACAAAGTTGAGTCATCTATCTTGAAA 57.091 30.769 15.99 0.00 0.00 2.69
557 558 8.778358 ACAAAGTTGAGTCATCTATCTTGAAAC 58.222 33.333 15.99 0.00 0.00 2.78
558 559 8.777413 CAAAGTTGAGTCATCTATCTTGAAACA 58.223 33.333 4.14 0.00 0.00 2.83
559 560 8.545229 AAGTTGAGTCATCTATCTTGAAACAG 57.455 34.615 4.14 0.00 0.00 3.16
560 561 7.901029 AGTTGAGTCATCTATCTTGAAACAGA 58.099 34.615 1.70 0.00 0.00 3.41
561 562 8.034215 AGTTGAGTCATCTATCTTGAAACAGAG 58.966 37.037 1.70 0.00 0.00 3.35
565 566 6.098124 AGTCATCTATCTTGAAACAGAGGGAG 59.902 42.308 0.00 0.00 0.00 4.30
573 574 6.878317 TCTTGAAACAGAGGGAGTACATATG 58.122 40.000 0.00 0.00 0.00 1.78
747 1058 8.123445 GATAAAGATCCTAAGTTCGCGTAAAA 57.877 34.615 5.77 0.00 0.00 1.52
912 1230 5.658190 CCCTTCATCTCTCTTTCTCTCTCTT 59.342 44.000 0.00 0.00 0.00 2.85
1151 1474 2.094854 CGTTACCACTCACCTACTCACC 60.095 54.545 0.00 0.00 0.00 4.02
1153 1476 0.190069 ACCACTCACCTACTCACCCA 59.810 55.000 0.00 0.00 0.00 4.51
1219 1542 2.877975 CCAGAAGGCTGATTGTGGG 58.122 57.895 0.00 0.00 45.17 4.61
1230 1553 3.679389 CTGATTGTGGGTGAGCTTAGTT 58.321 45.455 0.00 0.00 0.00 2.24
1232 1555 4.469657 TGATTGTGGGTGAGCTTAGTTTT 58.530 39.130 0.00 0.00 0.00 2.43
1259 1582 4.162690 GGGAGGGCTGTAGGCGTG 62.163 72.222 5.35 0.00 42.94 5.34
1261 1584 2.663196 GAGGGCTGTAGGCGTGTT 59.337 61.111 5.35 0.00 42.94 3.32
1262 1585 1.003718 GAGGGCTGTAGGCGTGTTT 60.004 57.895 5.35 0.00 42.94 2.83
1265 1588 2.332654 GGCTGTAGGCGTGTTTGGG 61.333 63.158 0.00 0.00 42.94 4.12
1266 1589 1.599797 GCTGTAGGCGTGTTTGGGT 60.600 57.895 0.00 0.00 0.00 4.51
1267 1590 1.170290 GCTGTAGGCGTGTTTGGGTT 61.170 55.000 0.00 0.00 0.00 4.11
1268 1591 1.314730 CTGTAGGCGTGTTTGGGTTT 58.685 50.000 0.00 0.00 0.00 3.27
1269 1592 1.001815 CTGTAGGCGTGTTTGGGTTTG 60.002 52.381 0.00 0.00 0.00 2.93
1270 1593 1.026584 GTAGGCGTGTTTGGGTTTGT 58.973 50.000 0.00 0.00 0.00 2.83
1271 1594 1.002142 GTAGGCGTGTTTGGGTTTGTC 60.002 52.381 0.00 0.00 0.00 3.18
1272 1595 0.681564 AGGCGTGTTTGGGTTTGTCA 60.682 50.000 0.00 0.00 0.00 3.58
1273 1596 0.526739 GGCGTGTTTGGGTTTGTCAC 60.527 55.000 0.00 0.00 0.00 3.67
1274 1597 0.454196 GCGTGTTTGGGTTTGTCACT 59.546 50.000 0.00 0.00 0.00 3.41
1288 1611 3.094484 TGTCACTTTGTCCCCTGTTTT 57.906 42.857 0.00 0.00 0.00 2.43
1295 1619 1.314730 TGTCCCCTGTTTTCGCTTTC 58.685 50.000 0.00 0.00 0.00 2.62
1301 1625 3.818773 CCCCTGTTTTCGCTTTCTCTTAA 59.181 43.478 0.00 0.00 0.00 1.85
1324 1648 1.153628 TTTCGGAGGCGCTTCTAGC 60.154 57.895 19.65 1.70 38.02 3.42
1346 1670 1.018910 GCGGCGGTGTATGGTAAATT 58.981 50.000 9.78 0.00 0.00 1.82
1367 1691 0.036765 AGCGGTTGTTTATCGAGCCA 60.037 50.000 0.00 0.00 0.00 4.75
1391 1715 2.352960 GGATTCGTGGAATTCTGCTGTC 59.647 50.000 5.23 0.00 31.89 3.51
1404 1728 1.048160 TGCTGTCCTGTGTGTCTCCA 61.048 55.000 0.00 0.00 0.00 3.86
1405 1729 0.320247 GCTGTCCTGTGTGTCTCCAG 60.320 60.000 0.00 0.00 0.00 3.86
1406 1730 1.043816 CTGTCCTGTGTGTCTCCAGT 58.956 55.000 0.00 0.00 0.00 4.00
1436 1760 4.467084 TGGATTCTGTCGGCGCCC 62.467 66.667 23.46 8.57 0.00 6.13
1487 1811 3.999001 TGACTGACTGTGAATGATCAAGC 59.001 43.478 0.00 0.00 37.30 4.01
1491 1815 3.999001 TGACTGTGAATGATCAAGCTCAC 59.001 43.478 20.76 20.76 37.30 3.51
1519 1844 1.810755 GTTTCGGGTAAAAGGAGCAGG 59.189 52.381 0.00 0.00 0.00 4.85
1521 1846 1.749258 CGGGTAAAAGGAGCAGGGC 60.749 63.158 0.00 0.00 0.00 5.19
1522 1847 1.382629 GGGTAAAAGGAGCAGGGCA 59.617 57.895 0.00 0.00 0.00 5.36
1528 1853 0.538287 AAAGGAGCAGGGCAAGTGAC 60.538 55.000 0.00 0.00 0.00 3.67
1580 1906 6.020360 GGCGATTTTAGATTTTGATGTTCAGC 60.020 38.462 0.00 0.00 0.00 4.26
1605 1931 1.353091 GAGGGAACAGTCTCCAGGTT 58.647 55.000 4.71 0.00 37.20 3.50
1614 1940 4.620723 ACAGTCTCCAGGTTATATGGACA 58.379 43.478 0.00 0.00 41.96 4.02
1674 2002 0.892755 TGGTAAGTGTCCGGTGCTAG 59.107 55.000 0.00 0.00 0.00 3.42
1677 2005 1.134560 GTAAGTGTCCGGTGCTAGGAG 59.865 57.143 0.00 0.00 38.65 3.69
1691 2019 5.241728 GGTGCTAGGAGTTCTCATTTGTTTT 59.758 40.000 2.24 0.00 0.00 2.43
1734 2062 6.928492 GGATGATTTCAGCTTGTTTGGTTAAA 59.072 34.615 0.00 0.00 31.98 1.52
1811 2139 7.341445 TGATGTTTAGTTAGTGGTTTGCTTT 57.659 32.000 0.00 0.00 0.00 3.51
1823 2151 5.928264 AGTGGTTTGCTTTTGATGCTTATTC 59.072 36.000 0.00 0.00 0.00 1.75
1915 2243 2.746472 GCCAAATCTAGCTGGGAATCGT 60.746 50.000 0.00 0.00 32.95 3.73
1919 2247 5.116180 CAAATCTAGCTGGGAATCGTGTTA 58.884 41.667 0.00 0.00 0.00 2.41
1929 2257 1.802365 GAATCGTGTTAACCTTGCCGT 59.198 47.619 2.48 0.00 0.00 5.68
1936 2264 3.560896 GTGTTAACCTTGCCGTTCTGTTA 59.439 43.478 2.48 0.00 0.00 2.41
1980 2308 8.239038 TGATTTGACATTGTGGGTTAGTTTTA 57.761 30.769 0.00 0.00 0.00 1.52
2137 2467 5.335127 GTTTTGATCGCAAAGCATGTAGAT 58.665 37.500 0.00 0.00 44.18 1.98
2175 2505 5.694816 TGTTGCACTTAACATATTGGAACG 58.305 37.500 0.00 0.00 41.63 3.95
2208 2538 2.093500 TCTTATAGGGTGTGCTGTGCTG 60.093 50.000 0.00 0.00 0.00 4.41
2227 2557 4.737054 GCTGTATAGCTTGCACACATTTT 58.263 39.130 3.91 0.00 46.57 1.82
2242 2572 7.173218 TGCACACATTTTACTTCTTCTCCTTAG 59.827 37.037 0.00 0.00 0.00 2.18
2243 2573 7.361286 GCACACATTTTACTTCTTCTCCTTAGG 60.361 40.741 0.00 0.00 0.00 2.69
2249 2579 8.904099 TTTTACTTCTTCTCCTTAGGTTCTTG 57.096 34.615 0.00 0.00 0.00 3.02
2322 2652 5.824904 TTTTGCAGATAGAGCCAATTCTC 57.175 39.130 0.00 0.00 0.00 2.87
2386 2716 3.006859 CAGTGTGTGAGTCCCATTAGTGA 59.993 47.826 0.00 0.00 0.00 3.41
2438 2774 7.731882 TTGAATTGCATGTCACATTTTGAAT 57.268 28.000 0.00 0.00 35.39 2.57
2474 2810 6.573664 TTGCTTGCACACTTGTAGATTTAT 57.426 33.333 0.00 0.00 0.00 1.40
2475 2811 7.680442 TTGCTTGCACACTTGTAGATTTATA 57.320 32.000 0.00 0.00 0.00 0.98
2504 2840 5.822519 TCCCTCTGATCCAAAATAATTGTCG 59.177 40.000 0.00 0.00 0.00 4.35
2550 2886 5.813080 AACTTTAGTTCAAAACTGCGACT 57.187 34.783 2.65 0.00 42.84 4.18
2660 2996 6.407475 ACAAGCAATTTTCACACTGTTTTC 57.593 33.333 0.00 0.00 0.00 2.29
2719 3055 5.163723 CGGCAATATTCATGTTCAAGTGACT 60.164 40.000 0.00 0.00 0.00 3.41
2734 3070 0.539669 TGACTGAGGCACTTCTCCGA 60.540 55.000 0.00 0.00 41.55 4.55
2798 3134 9.878667 AGCTTATAAGAAAAGAGAAGGTAGTTC 57.121 33.333 16.85 0.00 35.08 3.01
2856 3193 6.236017 TGTTTGCTTTAGAAGGTGAATACG 57.764 37.500 0.00 0.00 0.00 3.06
2898 3235 5.332743 AGAGGATGGCAAAATTGACCTTTA 58.667 37.500 0.00 0.00 34.48 1.85
2943 3281 8.768397 TCCTCATATGGTTTTGTTGACTACTAT 58.232 33.333 2.13 0.00 0.00 2.12
3026 3364 1.799933 ATAGCCAGGAGCAGCTACTT 58.200 50.000 3.56 0.00 43.97 2.24
3041 3379 5.220567 GCAGCTACTTGTTCTATTCTTCTGC 60.221 44.000 0.00 0.00 35.89 4.26
3061 3399 4.420168 TGCAACTTAGTTTTGTCACTTGC 58.580 39.130 0.00 0.00 30.52 4.01
3138 3476 5.006386 AGAGTTAATTGGGCATATGCTAGC 58.994 41.667 26.12 8.10 41.70 3.42
3172 3510 6.040278 GGAGGATACAACAGGTTAGTACTACC 59.960 46.154 0.91 7.65 41.41 3.18
3188 3526 6.157211 AGTACTACCGTTTCTTGTGAATCAG 58.843 40.000 0.00 0.00 31.56 2.90
3194 3532 5.411669 ACCGTTTCTTGTGAATCAGTATTCC 59.588 40.000 0.00 0.00 40.78 3.01
3207 3545 7.844214 GAATCAGTATTCCAGCATCTTGTGCA 61.844 42.308 2.64 0.00 44.42 4.57
3222 3560 2.649190 TGTGCAGTAGCTTTTGACCAA 58.351 42.857 0.00 0.00 42.74 3.67
3227 3565 6.030228 GTGCAGTAGCTTTTGACCAATTATC 58.970 40.000 0.00 0.00 42.74 1.75
3329 3667 5.762825 TTGCATTCTTCTCAGCATATTCC 57.237 39.130 0.00 0.00 36.80 3.01
3332 3670 4.749166 GCATTCTTCTCAGCATATTCCCCT 60.749 45.833 0.00 0.00 0.00 4.79
3371 3710 6.662414 TTCGTGCTTCCTTGTATTCATTAG 57.338 37.500 0.00 0.00 0.00 1.73
3397 3736 7.391148 TTCTTTTGCTATTGGGCTTAGTTAG 57.609 36.000 0.00 0.00 0.00 2.34
3422 3762 6.738453 GCCTTTTGAGAATTTGTGCTTTCCTA 60.738 38.462 0.00 0.00 0.00 2.94
3455 3795 7.426606 TCTTGTAATGGTGCTGTTATACCTA 57.573 36.000 0.00 0.00 37.84 3.08
3456 3796 7.853299 TCTTGTAATGGTGCTGTTATACCTAA 58.147 34.615 0.00 0.00 37.84 2.69
3457 3797 8.491134 TCTTGTAATGGTGCTGTTATACCTAAT 58.509 33.333 0.00 0.00 37.84 1.73
3458 3798 9.772973 CTTGTAATGGTGCTGTTATACCTAATA 57.227 33.333 0.00 0.00 37.84 0.98
3460 3800 9.719355 TGTAATGGTGCTGTTATACCTAATATG 57.281 33.333 0.00 0.00 37.84 1.78
3461 3801 9.720769 GTAATGGTGCTGTTATACCTAATATGT 57.279 33.333 0.00 0.00 37.84 2.29
3516 3856 2.805671 TGTGTTGCCTAGTGTTGAATCG 59.194 45.455 0.00 0.00 0.00 3.34
3531 3871 8.407064 AGTGTTGAATCGTTTTAAAATGGTGTA 58.593 29.630 17.90 3.65 0.00 2.90
3577 3917 3.756963 GAGTAATGTGGGACCAAAAGACC 59.243 47.826 0.00 0.00 0.00 3.85
3664 4004 4.701651 CCAACCATCTGAATCTGTGCTTTA 59.298 41.667 0.00 0.00 0.00 1.85
3673 4013 3.914426 ATCTGTGCTTTATCCGTTCCT 57.086 42.857 0.00 0.00 0.00 3.36
3690 4030 5.285651 CGTTCCTGGTTTTTGCTGAAATTA 58.714 37.500 0.00 0.00 0.00 1.40
3781 4121 3.417101 TGTTCAGACCTGTTTTGTGTGT 58.583 40.909 0.00 0.00 0.00 3.72
3782 4122 3.190327 TGTTCAGACCTGTTTTGTGTGTG 59.810 43.478 0.00 0.00 0.00 3.82
3800 4140 3.989817 GTGTGGTGAGGATTTTGATTTGC 59.010 43.478 0.00 0.00 0.00 3.68
3808 4148 4.320870 AGGATTTTGATTTGCTTTGCCTG 58.679 39.130 0.00 0.00 0.00 4.85
3850 4194 9.274065 GATATTTTCCACGATTGAAACAGTTAC 57.726 33.333 0.00 0.00 31.78 2.50
3851 4195 6.438259 TTTTCCACGATTGAAACAGTTACA 57.562 33.333 0.00 0.00 31.78 2.41
3852 4196 5.412526 TTCCACGATTGAAACAGTTACAC 57.587 39.130 0.00 0.00 0.00 2.90
3889 4233 6.320164 TGAGTGCCAGCTTCTTAGTTTTAAAA 59.680 34.615 0.00 0.00 0.00 1.52
3891 4235 7.147976 AGTGCCAGCTTCTTAGTTTTAAAATG 58.852 34.615 3.52 0.00 0.00 2.32
3941 4286 2.024176 TTCTAGGTCAGTGGCTTGGA 57.976 50.000 0.00 0.00 0.00 3.53
4080 4425 9.841295 TTCTATGGACCTGTTGTATTTTATACC 57.159 33.333 0.00 0.00 0.00 2.73
4082 4427 9.793259 CTATGGACCTGTTGTATTTTATACCAT 57.207 33.333 0.00 0.00 37.14 3.55
4084 4429 8.887264 TGGACCTGTTGTATTTTATACCATTT 57.113 30.769 0.00 0.00 0.00 2.32
4085 4430 8.744652 TGGACCTGTTGTATTTTATACCATTTG 58.255 33.333 0.00 0.00 0.00 2.32
4086 4431 8.194769 GGACCTGTTGTATTTTATACCATTTGG 58.805 37.037 0.00 0.00 42.17 3.28
4087 4432 8.887264 ACCTGTTGTATTTTATACCATTTGGA 57.113 30.769 3.01 0.00 38.94 3.53
4088 4433 9.487442 ACCTGTTGTATTTTATACCATTTGGAT 57.513 29.630 3.01 0.00 38.94 3.41
4135 4482 7.781324 AGATGTGTTTCAAAAGATGGGTTAT 57.219 32.000 0.00 0.00 0.00 1.89
4142 4489 9.308000 TGTTTCAAAAGATGGGTTATGTAGAAT 57.692 29.630 0.00 0.00 0.00 2.40
4235 4583 1.960417 TTGGTTCGTGTTGATGCTGA 58.040 45.000 0.00 0.00 0.00 4.26
4264 4612 9.742144 TTTGATTAGTAAAGCATACCCACTTAA 57.258 29.630 0.00 0.00 29.62 1.85
4265 4613 9.742144 TTGATTAGTAAAGCATACCCACTTAAA 57.258 29.630 0.00 0.00 29.62 1.52
4266 4614 9.391006 TGATTAGTAAAGCATACCCACTTAAAG 57.609 33.333 0.00 0.00 0.00 1.85
4267 4615 7.619964 TTAGTAAAGCATACCCACTTAAAGC 57.380 36.000 0.00 0.00 0.00 3.51
4268 4616 5.566469 AGTAAAGCATACCCACTTAAAGCA 58.434 37.500 0.00 0.00 0.00 3.91
4269 4617 5.648092 AGTAAAGCATACCCACTTAAAGCAG 59.352 40.000 0.00 0.00 0.00 4.24
4270 4618 2.369394 AGCATACCCACTTAAAGCAGC 58.631 47.619 0.00 0.00 0.00 5.25
4271 4619 2.091541 GCATACCCACTTAAAGCAGCA 58.908 47.619 0.00 0.00 0.00 4.41
4272 4620 2.159379 GCATACCCACTTAAAGCAGCAC 60.159 50.000 0.00 0.00 0.00 4.40
4273 4621 2.194201 TACCCACTTAAAGCAGCACC 57.806 50.000 0.00 0.00 0.00 5.01
4274 4622 0.539669 ACCCACTTAAAGCAGCACCC 60.540 55.000 0.00 0.00 0.00 4.61
4275 4623 0.539438 CCCACTTAAAGCAGCACCCA 60.539 55.000 0.00 0.00 0.00 4.51
4276 4624 0.598065 CCACTTAAAGCAGCACCCAC 59.402 55.000 0.00 0.00 0.00 4.61
4277 4625 1.609208 CACTTAAAGCAGCACCCACT 58.391 50.000 0.00 0.00 0.00 4.00
4278 4626 1.956477 CACTTAAAGCAGCACCCACTT 59.044 47.619 0.00 0.00 0.00 3.16
4279 4627 3.146066 CACTTAAAGCAGCACCCACTTA 58.854 45.455 0.00 0.00 0.00 2.24
4284 4632 0.178992 AGCAGCACCCACTTAAAGCA 60.179 50.000 0.00 0.00 0.00 3.91
4288 4636 0.039165 GCACCCACTTAAAGCAGCAC 60.039 55.000 0.00 0.00 0.00 4.40
4321 4669 6.509418 TTTAGCAGTAATTAGCTGGTTTGG 57.491 37.500 18.33 0.00 43.37 3.28
4403 4751 4.388773 TGTGATATCTGTTTCTGTTGCGAC 59.611 41.667 3.98 0.00 0.00 5.19
4439 4787 3.149196 TGATGTTCTTGGGCTTTGACTC 58.851 45.455 0.00 0.00 0.00 3.36
4460 4808 7.038587 TGACTCCTAGGAACTTAAGTATTGCAA 60.039 37.037 13.77 0.00 41.75 4.08
4496 4846 8.493607 TGTCATATAAAGTCTTTCCATCATCCA 58.506 33.333 0.00 0.00 0.00 3.41
4511 4863 3.671716 TCATCCATATGCTGAGATGTGC 58.328 45.455 15.18 0.00 35.62 4.57
4557 4909 6.849305 CAGAAAATGCAAAGCAGAAATCAAAC 59.151 34.615 0.00 0.00 43.65 2.93
4569 4921 3.691609 AGAAATCAAACGAAGATGCTCCC 59.308 43.478 0.00 0.00 0.00 4.30
4572 4924 1.002366 CAAACGAAGATGCTCCCGAG 58.998 55.000 0.00 0.00 0.00 4.63
4667 5020 3.317149 TGGATGCATCTCTTATGCTTTGC 59.683 43.478 25.28 5.33 44.79 3.68
4699 5052 8.256605 ACTTGCATGGCTCATATAGACTATAAG 58.743 37.037 6.29 2.60 32.57 1.73
4754 5134 3.130450 TGAATTATCCCACCTGTCCCAT 58.870 45.455 0.00 0.00 0.00 4.00
4762 5142 1.973281 ACCTGTCCCATTTGCTGCG 60.973 57.895 0.00 0.00 0.00 5.18
4774 5154 4.027458 CCATTTGCTGCGTTAATGATTTCG 60.027 41.667 17.82 0.00 32.36 3.46
4813 5193 2.475487 GGTTACTCAAGACGTGCTTCAC 59.525 50.000 0.00 0.00 33.60 3.18
4855 5235 2.025767 CTGGAGCCATCGAGGAGGTG 62.026 65.000 0.00 0.00 41.22 4.00
4900 5280 5.590530 TTGGTTTTGTCAAGTACAGCAAT 57.409 34.783 0.00 0.00 39.87 3.56
4976 5356 0.764890 ACCAGTCAAGGTTAGCAGCA 59.235 50.000 0.00 0.00 39.34 4.41
4991 5371 0.879765 CAGCACCTTTCCTGCTCAAG 59.120 55.000 0.00 0.00 43.34 3.02
4992 5372 0.475906 AGCACCTTTCCTGCTCAAGT 59.524 50.000 0.00 0.00 41.27 3.16
5001 5381 3.153369 TCCTGCTCAAGTATTTTGCCA 57.847 42.857 0.00 0.00 0.00 4.92
5006 5386 4.558178 TGCTCAAGTATTTTGCCAATGTG 58.442 39.130 0.00 0.00 0.00 3.21
5021 5401 3.009723 CAATGTGTCATCTTAACCGCCT 58.990 45.455 0.00 0.00 0.00 5.52
5028 5408 4.825085 TGTCATCTTAACCGCCTTTTCTTT 59.175 37.500 0.00 0.00 0.00 2.52
5029 5409 5.300792 TGTCATCTTAACCGCCTTTTCTTTT 59.699 36.000 0.00 0.00 0.00 2.27
5032 5412 5.684550 TCTTAACCGCCTTTTCTTTTCTC 57.315 39.130 0.00 0.00 0.00 2.87
5033 5413 4.517832 TCTTAACCGCCTTTTCTTTTCTCC 59.482 41.667 0.00 0.00 0.00 3.71
5034 5414 2.358322 ACCGCCTTTTCTTTTCTCCA 57.642 45.000 0.00 0.00 0.00 3.86
5035 5415 1.954382 ACCGCCTTTTCTTTTCTCCAC 59.046 47.619 0.00 0.00 0.00 4.02
5036 5416 2.230660 CCGCCTTTTCTTTTCTCCACT 58.769 47.619 0.00 0.00 0.00 4.00
5037 5417 2.226674 CCGCCTTTTCTTTTCTCCACTC 59.773 50.000 0.00 0.00 0.00 3.51
5038 5418 2.226674 CGCCTTTTCTTTTCTCCACTCC 59.773 50.000 0.00 0.00 0.00 3.85
5039 5419 2.226674 GCCTTTTCTTTTCTCCACTCCG 59.773 50.000 0.00 0.00 0.00 4.63
5040 5420 2.226674 CCTTTTCTTTTCTCCACTCCGC 59.773 50.000 0.00 0.00 0.00 5.54
5041 5421 2.930826 TTTCTTTTCTCCACTCCGCT 57.069 45.000 0.00 0.00 0.00 5.52
5042 5422 2.169832 TTCTTTTCTCCACTCCGCTG 57.830 50.000 0.00 0.00 0.00 5.18
5043 5423 0.321671 TCTTTTCTCCACTCCGCTGG 59.678 55.000 0.00 0.00 0.00 4.85
5044 5424 0.035458 CTTTTCTCCACTCCGCTGGT 59.965 55.000 0.00 0.00 32.50 4.00
5045 5425 1.275291 CTTTTCTCCACTCCGCTGGTA 59.725 52.381 0.00 0.00 32.50 3.25
5046 5426 1.568504 TTTCTCCACTCCGCTGGTAT 58.431 50.000 0.00 0.00 32.50 2.73
5151 5531 3.702048 GGTACCACCTCTGCGCCA 61.702 66.667 7.15 0.00 34.73 5.69
5238 5618 1.660167 CGATGAGCAAGATGGCTTCA 58.340 50.000 3.03 0.00 45.99 3.02
5274 5654 1.818785 GGCTCAGCATCTCAGGCAC 60.819 63.158 0.00 0.00 33.00 5.01
5346 5726 2.805353 CAGAACGTCGGTGCCTCG 60.805 66.667 0.00 0.00 0.00 4.63
5347 5727 4.719369 AGAACGTCGGTGCCTCGC 62.719 66.667 0.00 0.00 0.00 5.03
5411 5797 1.307691 AGCCTTGGAGGGAGCTCAT 60.308 57.895 17.19 2.72 35.37 2.90
5437 5823 8.808092 TCTTTGTAATTTGACCCGGATTTTATT 58.192 29.630 0.73 0.00 0.00 1.40
5601 6013 0.611714 GTGTATATAGGCCACCCCCG 59.388 60.000 5.01 0.00 0.00 5.73
5625 6037 8.070171 CCGTTCTGTTTATTGATAATGTGATCC 58.930 37.037 0.00 0.00 0.00 3.36
5669 6081 0.818445 CTCCATGATGAGGCAGCACC 60.818 60.000 0.00 0.00 30.87 5.01
5686 6098 1.741401 CCGCAGCCTCGATCACAAA 60.741 57.895 0.00 0.00 0.00 2.83
5728 6140 6.715280 AGGTAAGATGACATGACTCATTTGT 58.285 36.000 0.00 0.00 30.62 2.83
5871 6285 7.588497 AGCTAGGAAACAAAACAGAGAAAAT 57.412 32.000 0.00 0.00 0.00 1.82
5922 6336 3.341823 AGAGAAGGTAGCATGCAACAAG 58.658 45.455 21.98 0.00 0.00 3.16
6022 6436 9.976511 ATTTTATGCAGTGGAATATCATTTCTG 57.023 29.630 0.00 0.00 0.00 3.02
6023 6437 8.523915 TTTATGCAGTGGAATATCATTTCTGT 57.476 30.769 0.00 0.00 0.00 3.41
6025 6439 9.625747 TTATGCAGTGGAATATCATTTCTGTAA 57.374 29.630 0.00 0.00 0.00 2.41
6026 6440 7.558161 TGCAGTGGAATATCATTTCTGTAAG 57.442 36.000 0.00 0.00 0.00 2.34
6027 6441 7.112122 TGCAGTGGAATATCATTTCTGTAAGT 58.888 34.615 0.00 0.00 33.76 2.24
6028 6442 8.264347 TGCAGTGGAATATCATTTCTGTAAGTA 58.736 33.333 0.00 0.00 33.76 2.24
6029 6443 9.109393 GCAGTGGAATATCATTTCTGTAAGTAA 57.891 33.333 0.00 0.00 33.76 2.24
6142 6574 6.773976 TCCTTCACTGTTTCAAGAACAAAT 57.226 33.333 0.00 0.00 0.00 2.32
6149 6581 9.434420 TCACTGTTTCAAGAACAAATGAAAAAT 57.566 25.926 2.82 0.00 44.52 1.82
6185 6617 9.016623 CAACATCATGCACTTAAAATATCACAG 57.983 33.333 0.00 0.00 0.00 3.66
6209 6642 5.066505 GCTAAAAATATCACACTGACCAGGG 59.933 44.000 0.00 0.00 37.98 4.45
6215 6648 2.124983 CACTGACCAGGGATGCGG 60.125 66.667 1.82 0.00 32.29 5.69
6222 6655 2.597340 CAGGGATGCGGGGACAAT 59.403 61.111 0.00 0.00 0.00 2.71
6229 6662 1.670811 GATGCGGGGACAATAACACTG 59.329 52.381 0.00 0.00 0.00 3.66
6247 6680 1.398390 CTGGTTATGCGCCTCTGTTTC 59.602 52.381 4.18 0.00 0.00 2.78
6248 6681 0.733150 GGTTATGCGCCTCTGTTTCC 59.267 55.000 4.18 0.00 0.00 3.13
6308 6741 9.598517 CTCATATAAGCATTTAGGAGGAATCTC 57.401 37.037 0.00 0.00 39.25 2.75
6345 6778 5.816449 TTCGAGCATTGCTAAAATGATGA 57.184 34.783 11.96 0.00 39.88 2.92
6351 6784 7.859377 CGAGCATTGCTAAAATGATGAATACTT 59.141 33.333 11.96 0.00 39.88 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 9.574516 AGGTGATAAGACAAGAAAATTTACAGT 57.425 29.630 0.00 0.00 0.00 3.55
184 185 9.406828 CGAGGTAATCTTACGATCATTTCATAA 57.593 33.333 0.00 0.00 34.50 1.90
185 186 8.027189 CCGAGGTAATCTTACGATCATTTCATA 58.973 37.037 0.00 0.00 34.50 2.15
186 187 6.868864 CCGAGGTAATCTTACGATCATTTCAT 59.131 38.462 0.00 0.00 34.50 2.57
187 188 6.213677 CCGAGGTAATCTTACGATCATTTCA 58.786 40.000 0.00 0.00 34.50 2.69
188 189 5.634020 CCCGAGGTAATCTTACGATCATTTC 59.366 44.000 0.00 0.00 34.50 2.17
189 190 5.070047 ACCCGAGGTAATCTTACGATCATTT 59.930 40.000 0.00 0.00 32.11 2.32
190 191 4.587684 ACCCGAGGTAATCTTACGATCATT 59.412 41.667 0.00 0.00 32.11 2.57
191 192 4.022242 CACCCGAGGTAATCTTACGATCAT 60.022 45.833 0.00 0.00 32.11 2.45
192 193 3.317149 CACCCGAGGTAATCTTACGATCA 59.683 47.826 0.00 0.00 32.11 2.92
193 194 3.567164 TCACCCGAGGTAATCTTACGATC 59.433 47.826 0.00 0.00 32.11 3.69
194 195 3.559069 TCACCCGAGGTAATCTTACGAT 58.441 45.455 0.00 0.00 32.11 3.73
195 196 3.003394 TCACCCGAGGTAATCTTACGA 57.997 47.619 0.00 0.00 32.11 3.43
196 197 3.788333 TTCACCCGAGGTAATCTTACG 57.212 47.619 0.00 0.00 32.11 3.18
197 198 9.201127 GTTATTATTCACCCGAGGTAATCTTAC 57.799 37.037 0.00 0.00 32.11 2.34
198 199 9.151177 AGTTATTATTCACCCGAGGTAATCTTA 57.849 33.333 0.00 0.00 32.11 2.10
199 200 8.030913 AGTTATTATTCACCCGAGGTAATCTT 57.969 34.615 0.00 0.00 32.11 2.40
200 201 7.613551 AGTTATTATTCACCCGAGGTAATCT 57.386 36.000 0.00 0.00 32.11 2.40
201 202 9.939802 ATAAGTTATTATTCACCCGAGGTAATC 57.060 33.333 0.00 0.00 32.11 1.75
216 217 9.950496 CATCTAGGGTGCAGAATAAGTTATTAT 57.050 33.333 8.12 2.45 32.81 1.28
217 218 9.154632 TCATCTAGGGTGCAGAATAAGTTATTA 57.845 33.333 8.12 0.00 0.00 0.98
218 219 8.034313 TCATCTAGGGTGCAGAATAAGTTATT 57.966 34.615 7.87 7.87 0.00 1.40
219 220 7.618019 TCATCTAGGGTGCAGAATAAGTTAT 57.382 36.000 0.00 0.00 0.00 1.89
220 221 7.290014 TCATCATCTAGGGTGCAGAATAAGTTA 59.710 37.037 0.00 0.00 0.00 2.24
221 222 5.957771 TCATCTAGGGTGCAGAATAAGTT 57.042 39.130 0.00 0.00 0.00 2.66
222 223 5.604231 TCATCATCTAGGGTGCAGAATAAGT 59.396 40.000 0.00 0.00 0.00 2.24
223 224 6.106648 TCATCATCTAGGGTGCAGAATAAG 57.893 41.667 0.00 0.00 0.00 1.73
224 225 6.499106 TTCATCATCTAGGGTGCAGAATAA 57.501 37.500 0.00 0.00 0.00 1.40
225 226 6.692849 ATTCATCATCTAGGGTGCAGAATA 57.307 37.500 0.00 0.00 0.00 1.75
226 227 5.579753 ATTCATCATCTAGGGTGCAGAAT 57.420 39.130 0.00 1.10 0.00 2.40
227 228 5.604231 ACTATTCATCATCTAGGGTGCAGAA 59.396 40.000 0.00 0.00 0.00 3.02
228 229 5.150715 ACTATTCATCATCTAGGGTGCAGA 58.849 41.667 0.00 0.00 0.00 4.26
229 230 5.480642 ACTATTCATCATCTAGGGTGCAG 57.519 43.478 0.00 0.00 0.00 4.41
230 231 6.326323 TGTTACTATTCATCATCTAGGGTGCA 59.674 38.462 0.00 0.00 0.00 4.57
231 232 6.647067 GTGTTACTATTCATCATCTAGGGTGC 59.353 42.308 0.00 0.00 0.00 5.01
232 233 7.957002 AGTGTTACTATTCATCATCTAGGGTG 58.043 38.462 0.00 0.00 0.00 4.61
233 234 9.830186 ATAGTGTTACTATTCATCATCTAGGGT 57.170 33.333 0.00 0.00 38.17 4.34
314 315 9.154847 GCCTGCATTGAAATATTTAAAAGAACT 57.845 29.630 0.00 0.00 0.00 3.01
315 316 8.390354 GGCCTGCATTGAAATATTTAAAAGAAC 58.610 33.333 0.00 0.00 0.00 3.01
316 317 7.552330 GGGCCTGCATTGAAATATTTAAAAGAA 59.448 33.333 0.84 0.00 0.00 2.52
317 318 7.047271 GGGCCTGCATTGAAATATTTAAAAGA 58.953 34.615 0.84 0.00 0.00 2.52
318 319 7.049754 AGGGCCTGCATTGAAATATTTAAAAG 58.950 34.615 4.50 0.00 0.00 2.27
319 320 6.956497 AGGGCCTGCATTGAAATATTTAAAA 58.044 32.000 4.50 0.00 0.00 1.52
320 321 6.407979 GGAGGGCCTGCATTGAAATATTTAAA 60.408 38.462 21.34 0.00 0.00 1.52
321 322 5.070313 GGAGGGCCTGCATTGAAATATTTAA 59.930 40.000 21.34 0.00 0.00 1.52
322 323 4.588528 GGAGGGCCTGCATTGAAATATTTA 59.411 41.667 21.34 0.00 0.00 1.40
323 324 3.389002 GGAGGGCCTGCATTGAAATATTT 59.611 43.478 21.34 0.00 0.00 1.40
324 325 2.967887 GGAGGGCCTGCATTGAAATATT 59.032 45.455 21.34 0.00 0.00 1.28
325 326 2.601905 GGAGGGCCTGCATTGAAATAT 58.398 47.619 21.34 0.00 0.00 1.28
326 327 1.750332 CGGAGGGCCTGCATTGAAATA 60.750 52.381 25.45 0.00 0.00 1.40
327 328 1.039233 CGGAGGGCCTGCATTGAAAT 61.039 55.000 25.45 0.00 0.00 2.17
328 329 1.678635 CGGAGGGCCTGCATTGAAA 60.679 57.895 25.45 0.00 0.00 2.69
329 330 2.045045 CGGAGGGCCTGCATTGAA 60.045 61.111 25.45 0.00 0.00 2.69
330 331 2.424842 AAACGGAGGGCCTGCATTGA 62.425 55.000 25.45 0.00 0.00 2.57
331 332 1.535204 AAAACGGAGGGCCTGCATTG 61.535 55.000 25.45 11.28 0.00 2.82
332 333 0.039035 TAAAACGGAGGGCCTGCATT 59.961 50.000 25.45 13.98 0.00 3.56
333 334 0.039035 TTAAAACGGAGGGCCTGCAT 59.961 50.000 25.45 6.89 0.00 3.96
334 335 0.178987 TTTAAAACGGAGGGCCTGCA 60.179 50.000 25.45 1.31 0.00 4.41
335 336 0.963225 TTTTAAAACGGAGGGCCTGC 59.037 50.000 12.95 14.76 0.00 4.85
336 337 4.266714 TCTATTTTAAAACGGAGGGCCTG 58.733 43.478 12.95 0.00 0.00 4.85
337 338 4.579647 TCTATTTTAAAACGGAGGGCCT 57.420 40.909 5.25 5.25 0.00 5.19
338 339 4.885325 TCATCTATTTTAAAACGGAGGGCC 59.115 41.667 1.97 0.00 0.00 5.80
339 340 5.589050 AGTCATCTATTTTAAAACGGAGGGC 59.411 40.000 1.97 7.77 0.00 5.19
340 341 8.726870 TTAGTCATCTATTTTAAAACGGAGGG 57.273 34.615 1.97 2.46 0.00 4.30
341 342 9.983804 GTTTAGTCATCTATTTTAAAACGGAGG 57.016 33.333 1.97 6.55 0.00 4.30
378 379 8.648968 CCGCAAAAGAAAAACTTTGTACTAAAA 58.351 29.630 0.00 0.00 46.55 1.52
379 380 8.027771 TCCGCAAAAGAAAAACTTTGTACTAAA 58.972 29.630 0.00 0.00 46.55 1.85
380 381 7.536855 TCCGCAAAAGAAAAACTTTGTACTAA 58.463 30.769 0.00 0.00 46.55 2.24
381 382 7.086230 TCCGCAAAAGAAAAACTTTGTACTA 57.914 32.000 0.00 0.00 46.55 1.82
382 383 5.956642 TCCGCAAAAGAAAAACTTTGTACT 58.043 33.333 0.00 0.00 46.55 2.73
383 384 6.635166 TTCCGCAAAAGAAAAACTTTGTAC 57.365 33.333 0.00 0.00 46.55 2.90
384 385 7.385478 AGTTTTCCGCAAAAGAAAAACTTTGTA 59.615 29.630 6.32 0.00 46.55 2.41
385 386 6.203915 AGTTTTCCGCAAAAGAAAAACTTTGT 59.796 30.769 6.32 0.00 46.55 2.83
386 387 6.598525 AGTTTTCCGCAAAAGAAAAACTTTG 58.401 32.000 6.32 0.00 46.55 2.77
388 389 6.795098 AAGTTTTCCGCAAAAGAAAAACTT 57.205 29.167 15.36 15.36 42.97 2.66
389 390 6.795098 AAAGTTTTCCGCAAAAGAAAAACT 57.205 29.167 6.32 6.32 42.97 2.66
390 391 7.735500 ACTAAAGTTTTCCGCAAAAGAAAAAC 58.264 30.769 0.00 0.00 42.97 2.43
391 392 7.892778 ACTAAAGTTTTCCGCAAAAGAAAAA 57.107 28.000 0.00 0.00 42.97 1.94
392 393 8.245491 AGTACTAAAGTTTTCCGCAAAAGAAAA 58.755 29.630 0.00 0.00 40.08 2.29
393 394 7.764331 AGTACTAAAGTTTTCCGCAAAAGAAA 58.236 30.769 0.00 0.00 31.92 2.52
394 395 7.324354 AGTACTAAAGTTTTCCGCAAAAGAA 57.676 32.000 0.00 0.00 31.92 2.52
395 396 6.017687 GGAGTACTAAAGTTTTCCGCAAAAGA 60.018 38.462 0.00 0.00 31.92 2.52
396 397 6.140786 GGAGTACTAAAGTTTTCCGCAAAAG 58.859 40.000 0.00 0.00 31.92 2.27
397 398 5.008911 GGGAGTACTAAAGTTTTCCGCAAAA 59.991 40.000 0.00 0.00 33.06 2.44
398 399 4.516321 GGGAGTACTAAAGTTTTCCGCAAA 59.484 41.667 0.00 0.00 33.06 3.68
399 400 4.067192 GGGAGTACTAAAGTTTTCCGCAA 58.933 43.478 0.00 0.00 33.06 4.85
400 401 3.325716 AGGGAGTACTAAAGTTTTCCGCA 59.674 43.478 0.00 0.00 33.06 5.69
401 402 3.931468 GAGGGAGTACTAAAGTTTTCCGC 59.069 47.826 0.00 0.00 33.06 5.54
402 403 4.171754 CGAGGGAGTACTAAAGTTTTCCG 58.828 47.826 0.00 0.00 33.06 4.30
403 404 4.020751 ACCGAGGGAGTACTAAAGTTTTCC 60.021 45.833 0.00 0.00 0.00 3.13
404 405 5.144692 ACCGAGGGAGTACTAAAGTTTTC 57.855 43.478 0.00 0.00 0.00 2.29
405 406 4.020751 GGACCGAGGGAGTACTAAAGTTTT 60.021 45.833 0.00 0.00 0.00 2.43
406 407 3.513119 GGACCGAGGGAGTACTAAAGTTT 59.487 47.826 0.00 0.00 0.00 2.66
407 408 3.095332 GGACCGAGGGAGTACTAAAGTT 58.905 50.000 0.00 0.00 0.00 2.66
408 409 2.732763 GGACCGAGGGAGTACTAAAGT 58.267 52.381 0.00 0.00 0.00 2.66
409 410 1.674962 CGGACCGAGGGAGTACTAAAG 59.325 57.143 8.64 0.00 0.00 1.85
410 411 1.683011 CCGGACCGAGGGAGTACTAAA 60.683 57.143 17.49 0.00 0.00 1.85
411 412 0.107017 CCGGACCGAGGGAGTACTAA 60.107 60.000 17.49 0.00 0.00 2.24
412 413 0.982852 TCCGGACCGAGGGAGTACTA 60.983 60.000 17.49 0.00 0.00 1.82
413 414 1.856539 TTCCGGACCGAGGGAGTACT 61.857 60.000 17.49 0.00 33.01 2.73
414 415 0.967380 TTTCCGGACCGAGGGAGTAC 60.967 60.000 17.49 0.00 33.01 2.73
415 416 0.032813 ATTTCCGGACCGAGGGAGTA 60.033 55.000 17.49 0.00 33.01 2.59
416 417 0.032813 TATTTCCGGACCGAGGGAGT 60.033 55.000 17.49 0.00 33.01 3.85
417 418 0.388294 GTATTTCCGGACCGAGGGAG 59.612 60.000 17.49 0.00 33.01 4.30
418 419 0.032813 AGTATTTCCGGACCGAGGGA 60.033 55.000 17.49 0.46 0.00 4.20
419 420 0.828677 AAGTATTTCCGGACCGAGGG 59.171 55.000 17.49 0.00 0.00 4.30
420 421 1.206371 ACAAGTATTTCCGGACCGAGG 59.794 52.381 17.49 0.00 0.00 4.63
421 422 2.537401 GACAAGTATTTCCGGACCGAG 58.463 52.381 17.49 5.68 0.00 4.63
422 423 1.205417 GGACAAGTATTTCCGGACCGA 59.795 52.381 17.49 0.00 0.00 4.69
423 424 1.066716 TGGACAAGTATTTCCGGACCG 60.067 52.381 1.83 6.99 34.24 4.79
424 425 2.773993 TGGACAAGTATTTCCGGACC 57.226 50.000 1.83 0.00 34.24 4.46
425 426 3.007635 CCTTGGACAAGTATTTCCGGAC 58.992 50.000 1.83 0.00 36.72 4.79
426 427 2.640826 ACCTTGGACAAGTATTTCCGGA 59.359 45.455 0.00 0.00 36.72 5.14
427 428 3.067684 ACCTTGGACAAGTATTTCCGG 57.932 47.619 10.81 0.00 36.72 5.14
428 429 6.812998 TCTATACCTTGGACAAGTATTTCCG 58.187 40.000 10.81 0.00 36.72 4.30
429 430 8.211629 ACATCTATACCTTGGACAAGTATTTCC 58.788 37.037 10.81 0.00 36.72 3.13
433 434 9.830186 AGATACATCTATACCTTGGACAAGTAT 57.170 33.333 10.81 10.35 34.46 2.12
435 436 9.303116 CTAGATACATCTATACCTTGGACAAGT 57.697 37.037 10.81 2.70 38.60 3.16
436 437 9.521841 TCTAGATACATCTATACCTTGGACAAG 57.478 37.037 5.09 5.09 38.60 3.16
438 439 9.467796 CATCTAGATACATCTATACCTTGGACA 57.532 37.037 4.54 0.00 38.60 4.02
439 440 9.469097 ACATCTAGATACATCTATACCTTGGAC 57.531 37.037 4.54 0.00 38.60 4.02
485 486 9.840427 ACTTGTCGTAGAAATGAATAAAAATGG 57.160 29.630 0.00 0.00 39.69 3.16
492 493 9.027129 CGGAAATACTTGTCGTAGAAATGAATA 57.973 33.333 0.00 0.00 39.69 1.75
493 494 7.011109 CCGGAAATACTTGTCGTAGAAATGAAT 59.989 37.037 0.00 0.00 39.69 2.57
494 495 6.311935 CCGGAAATACTTGTCGTAGAAATGAA 59.688 38.462 0.00 0.00 39.69 2.57
495 496 5.808540 CCGGAAATACTTGTCGTAGAAATGA 59.191 40.000 0.00 0.00 39.69 2.57
496 497 5.808540 TCCGGAAATACTTGTCGTAGAAATG 59.191 40.000 0.00 0.00 39.69 2.32
497 498 5.809051 GTCCGGAAATACTTGTCGTAGAAAT 59.191 40.000 5.23 0.00 39.69 2.17
498 499 5.163513 GTCCGGAAATACTTGTCGTAGAAA 58.836 41.667 5.23 0.00 39.69 2.52
499 500 4.218200 TGTCCGGAAATACTTGTCGTAGAA 59.782 41.667 5.23 0.00 39.69 2.10
500 501 3.758023 TGTCCGGAAATACTTGTCGTAGA 59.242 43.478 5.23 0.00 0.00 2.59
501 502 4.100707 TGTCCGGAAATACTTGTCGTAG 57.899 45.455 5.23 0.00 0.00 3.51
502 503 3.758023 TCTGTCCGGAAATACTTGTCGTA 59.242 43.478 5.23 0.00 0.00 3.43
503 504 2.559668 TCTGTCCGGAAATACTTGTCGT 59.440 45.455 5.23 0.00 0.00 4.34
504 505 3.179830 CTCTGTCCGGAAATACTTGTCG 58.820 50.000 5.23 0.00 0.00 4.35
505 506 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
506 507 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
507 508 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
508 509 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
509 510 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
510 511 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
511 512 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
512 513 2.108970 GTACTCCCTCTGTCCGGAAAT 58.891 52.381 5.23 0.00 0.00 2.17
513 514 1.203087 TGTACTCCCTCTGTCCGGAAA 60.203 52.381 5.23 0.00 0.00 3.13
514 515 0.406750 TGTACTCCCTCTGTCCGGAA 59.593 55.000 5.23 0.00 0.00 4.30
515 516 0.406750 TTGTACTCCCTCTGTCCGGA 59.593 55.000 0.00 0.00 0.00 5.14
516 517 1.204941 CTTTGTACTCCCTCTGTCCGG 59.795 57.143 0.00 0.00 0.00 5.14
517 518 1.893801 ACTTTGTACTCCCTCTGTCCG 59.106 52.381 0.00 0.00 0.00 4.79
518 519 3.323979 TCAACTTTGTACTCCCTCTGTCC 59.676 47.826 0.00 0.00 0.00 4.02
519 520 4.039366 ACTCAACTTTGTACTCCCTCTGTC 59.961 45.833 0.00 0.00 0.00 3.51
520 521 3.967987 ACTCAACTTTGTACTCCCTCTGT 59.032 43.478 0.00 0.00 0.00 3.41
521 522 4.039245 TGACTCAACTTTGTACTCCCTCTG 59.961 45.833 0.00 0.00 0.00 3.35
522 523 4.223953 TGACTCAACTTTGTACTCCCTCT 58.776 43.478 0.00 0.00 0.00 3.69
523 524 4.602340 TGACTCAACTTTGTACTCCCTC 57.398 45.455 0.00 0.00 0.00 4.30
524 525 4.841246 AGATGACTCAACTTTGTACTCCCT 59.159 41.667 0.00 0.00 0.00 4.20
525 526 5.153950 AGATGACTCAACTTTGTACTCCC 57.846 43.478 0.00 0.00 0.00 4.30
526 527 7.777095 AGATAGATGACTCAACTTTGTACTCC 58.223 38.462 0.00 0.00 0.00 3.85
527 528 9.081997 CAAGATAGATGACTCAACTTTGTACTC 57.918 37.037 0.00 0.00 0.00 2.59
528 529 8.807118 TCAAGATAGATGACTCAACTTTGTACT 58.193 33.333 0.00 0.00 0.00 2.73
529 530 8.988064 TCAAGATAGATGACTCAACTTTGTAC 57.012 34.615 0.00 0.00 0.00 2.90
530 531 9.996554 TTTCAAGATAGATGACTCAACTTTGTA 57.003 29.630 0.00 0.00 0.00 2.41
531 532 8.778358 GTTTCAAGATAGATGACTCAACTTTGT 58.222 33.333 0.00 0.00 0.00 2.83
532 533 8.777413 TGTTTCAAGATAGATGACTCAACTTTG 58.223 33.333 0.00 0.00 0.00 2.77
533 534 8.908786 TGTTTCAAGATAGATGACTCAACTTT 57.091 30.769 0.00 0.00 0.00 2.66
534 535 8.370940 TCTGTTTCAAGATAGATGACTCAACTT 58.629 33.333 0.00 0.00 0.00 2.66
535 536 7.901029 TCTGTTTCAAGATAGATGACTCAACT 58.099 34.615 0.00 0.00 0.00 3.16
536 537 7.277539 CCTCTGTTTCAAGATAGATGACTCAAC 59.722 40.741 0.00 0.00 0.00 3.18
537 538 7.326454 CCTCTGTTTCAAGATAGATGACTCAA 58.674 38.462 0.00 0.00 0.00 3.02
538 539 6.127225 CCCTCTGTTTCAAGATAGATGACTCA 60.127 42.308 0.00 0.00 0.00 3.41
539 540 6.097554 TCCCTCTGTTTCAAGATAGATGACTC 59.902 42.308 0.00 0.00 0.00 3.36
540 541 5.960811 TCCCTCTGTTTCAAGATAGATGACT 59.039 40.000 0.00 0.00 0.00 3.41
541 542 6.127196 ACTCCCTCTGTTTCAAGATAGATGAC 60.127 42.308 0.00 0.00 0.00 3.06
542 543 5.960811 ACTCCCTCTGTTTCAAGATAGATGA 59.039 40.000 0.00 0.00 0.00 2.92
543 544 6.232581 ACTCCCTCTGTTTCAAGATAGATG 57.767 41.667 0.00 0.00 0.00 2.90
544 545 6.897966 TGTACTCCCTCTGTTTCAAGATAGAT 59.102 38.462 0.00 0.00 0.00 1.98
545 546 6.253758 TGTACTCCCTCTGTTTCAAGATAGA 58.746 40.000 0.00 0.00 0.00 1.98
546 547 6.531503 TGTACTCCCTCTGTTTCAAGATAG 57.468 41.667 0.00 0.00 0.00 2.08
547 548 8.642432 CATATGTACTCCCTCTGTTTCAAGATA 58.358 37.037 0.00 0.00 0.00 1.98
548 549 7.345653 TCATATGTACTCCCTCTGTTTCAAGAT 59.654 37.037 1.90 0.00 0.00 2.40
549 550 6.667848 TCATATGTACTCCCTCTGTTTCAAGA 59.332 38.462 1.90 0.00 0.00 3.02
550 551 6.878317 TCATATGTACTCCCTCTGTTTCAAG 58.122 40.000 1.90 0.00 0.00 3.02
551 552 6.867519 TCATATGTACTCCCTCTGTTTCAA 57.132 37.500 1.90 0.00 0.00 2.69
552 553 6.867519 TTCATATGTACTCCCTCTGTTTCA 57.132 37.500 1.90 0.00 0.00 2.69
553 554 7.275920 ACATTCATATGTACTCCCTCTGTTTC 58.724 38.462 1.90 0.00 43.12 2.78
554 555 7.200434 ACATTCATATGTACTCCCTCTGTTT 57.800 36.000 1.90 0.00 43.12 2.83
555 556 6.814954 ACATTCATATGTACTCCCTCTGTT 57.185 37.500 1.90 0.00 43.12 3.16
556 557 9.775539 ATATACATTCATATGTACTCCCTCTGT 57.224 33.333 1.90 0.00 46.91 3.41
644 645 8.551682 TTACTCCCTCCGTTCCTAAATATAAA 57.448 34.615 0.00 0.00 0.00 1.40
655 656 6.226052 TCTTTACTTTTTACTCCCTCCGTTC 58.774 40.000 0.00 0.00 0.00 3.95
747 1058 2.433436 GCGACCCCTGTATTTGTCTTT 58.567 47.619 0.00 0.00 0.00 2.52
750 1061 1.087771 CGGCGACCCCTGTATTTGTC 61.088 60.000 0.00 0.00 0.00 3.18
795 1112 1.268778 GCTCGCTTGTTTCGGTTTGC 61.269 55.000 0.00 0.00 0.00 3.68
852 1170 3.122780 AGTTTGTTTGTTTTGCTTCGTGC 59.877 39.130 0.00 0.00 43.25 5.34
912 1230 1.305046 GAGAAGGTCGGGGTGGAGA 60.305 63.158 0.00 0.00 0.00 3.71
1083 1406 1.841556 GAGGAGGTGGTGGTGGTGA 60.842 63.158 0.00 0.00 0.00 4.02
1219 1542 4.434330 CCGATGTTCGAAAACTAAGCTCAC 60.434 45.833 0.00 0.00 43.74 3.51
1230 1553 1.600107 CCCTCCCCGATGTTCGAAA 59.400 57.895 0.00 0.00 43.74 3.46
1232 1555 3.467226 GCCCTCCCCGATGTTCGA 61.467 66.667 0.00 0.00 43.74 3.71
1259 1582 3.517602 GGACAAAGTGACAAACCCAAAC 58.482 45.455 0.00 0.00 0.00 2.93
1261 1584 2.104170 GGGACAAAGTGACAAACCCAA 58.896 47.619 0.00 0.00 36.27 4.12
1262 1585 1.686741 GGGGACAAAGTGACAAACCCA 60.687 52.381 0.00 0.00 37.78 4.51
1265 1588 2.375146 ACAGGGGACAAAGTGACAAAC 58.625 47.619 0.00 0.00 0.00 2.93
1266 1589 2.818751 ACAGGGGACAAAGTGACAAA 57.181 45.000 0.00 0.00 0.00 2.83
1267 1590 2.818751 AACAGGGGACAAAGTGACAA 57.181 45.000 0.00 0.00 0.00 3.18
1268 1591 2.818751 AAACAGGGGACAAAGTGACA 57.181 45.000 0.00 0.00 0.00 3.58
1269 1592 2.032924 CGAAAACAGGGGACAAAGTGAC 59.967 50.000 0.00 0.00 0.00 3.67
1270 1593 2.294074 CGAAAACAGGGGACAAAGTGA 58.706 47.619 0.00 0.00 0.00 3.41
1271 1594 1.269051 GCGAAAACAGGGGACAAAGTG 60.269 52.381 0.00 0.00 0.00 3.16
1272 1595 1.029681 GCGAAAACAGGGGACAAAGT 58.970 50.000 0.00 0.00 0.00 2.66
1273 1596 1.318576 AGCGAAAACAGGGGACAAAG 58.681 50.000 0.00 0.00 0.00 2.77
1274 1597 1.770294 AAGCGAAAACAGGGGACAAA 58.230 45.000 0.00 0.00 0.00 2.83
1288 1611 3.739300 CGAAACCACTTAAGAGAAAGCGA 59.261 43.478 10.09 0.00 0.00 4.93
1295 1619 2.347731 GCCTCCGAAACCACTTAAGAG 58.652 52.381 10.09 0.27 0.00 2.85
1301 1625 3.178540 AAGCGCCTCCGAAACCACT 62.179 57.895 2.29 0.00 36.29 4.00
1326 1650 1.155424 ATTTACCATACACCGCCGCG 61.155 55.000 5.59 5.59 0.00 6.46
1346 1670 1.355971 GCTCGATAAACAACCGCTCA 58.644 50.000 0.00 0.00 0.00 4.26
1367 1691 2.503356 AGCAGAATTCCACGAATCCTCT 59.497 45.455 0.65 0.00 30.29 3.69
1391 1715 0.034059 GGACACTGGAGACACACAGG 59.966 60.000 0.00 0.00 39.00 4.00
1436 1760 3.993081 CTGCTGTCCTCAGTTTCTACTTG 59.007 47.826 0.00 0.00 43.05 3.16
1487 1811 2.561569 ACCCGAAACAAACAGAGTGAG 58.438 47.619 0.00 0.00 0.00 3.51
1491 1815 4.577283 TCCTTTTACCCGAAACAAACAGAG 59.423 41.667 0.00 0.00 0.00 3.35
1519 1844 1.923227 GCGCCTTAAGGTCACTTGCC 61.923 60.000 22.55 2.58 37.53 4.52
1521 1846 1.523758 AAGCGCCTTAAGGTCACTTG 58.476 50.000 22.55 7.37 37.53 3.16
1522 1847 2.302157 ACTAAGCGCCTTAAGGTCACTT 59.698 45.455 22.55 21.98 40.74 3.16
1528 1853 2.695359 TGAACACTAAGCGCCTTAAGG 58.305 47.619 17.81 17.81 38.53 2.69
1580 1906 3.165875 TGGAGACTGTTCCCTCACTTAG 58.834 50.000 0.00 0.00 36.35 2.18
1624 1950 6.976349 TCGCTAATCGTTCACTACAACATAAT 59.024 34.615 0.00 0.00 39.67 1.28
1811 2139 3.938963 GTCTTCCACCGAATAAGCATCAA 59.061 43.478 0.00 0.00 0.00 2.57
1823 2151 1.009829 GCATTAGCAGTCTTCCACCG 58.990 55.000 0.00 0.00 41.58 4.94
1915 2243 2.335316 ACAGAACGGCAAGGTTAACA 57.665 45.000 8.10 0.00 0.00 2.41
1919 2247 7.875327 AATTATATAACAGAACGGCAAGGTT 57.125 32.000 0.00 0.00 0.00 3.50
1966 2294 7.830201 TGAAAGAGACTTTAAAACTAACCCACA 59.170 33.333 0.00 0.00 0.00 4.17
1980 2308 8.097078 CTCATGATTTGAGTGAAAGAGACTTT 57.903 34.615 0.00 0.00 45.79 2.66
2119 2449 5.415415 AAGAATCTACATGCTTTGCGATC 57.585 39.130 0.00 0.00 0.00 3.69
2175 2505 5.780793 ACACCCTATAAGATATCACCAGGAC 59.219 44.000 5.32 0.00 0.00 3.85
2208 2538 7.752695 AGAAGTAAAATGTGTGCAAGCTATAC 58.247 34.615 0.00 0.00 0.00 1.47
2227 2557 5.780793 AGCAAGAACCTAAGGAGAAGAAGTA 59.219 40.000 0.00 0.00 0.00 2.24
2322 2652 1.171308 CAGGTGGCAGATTTCCAGTG 58.829 55.000 0.00 0.00 33.63 3.66
2401 2737 5.440234 TGCAATTCAAAGCATGCAAAAAT 57.560 30.435 21.98 10.75 45.04 1.82
2438 2774 5.350091 GTGTGCAAGCAAAAGGAAGTAAAAA 59.650 36.000 0.00 0.00 0.00 1.94
2475 2811 9.359653 CAATTATTTTGGATCAGAGGGAGTATT 57.640 33.333 0.00 0.00 0.00 1.89
2486 2822 5.895636 ACTGCGACAATTATTTTGGATCA 57.104 34.783 0.00 0.00 0.00 2.92
2499 2835 5.493133 ACATTAGTTCAAAACTGCGACAA 57.507 34.783 2.65 0.00 42.84 3.18
2504 2840 8.743099 GTTAGTTCAACATTAGTTCAAAACTGC 58.257 33.333 2.65 0.00 38.47 4.40
2531 2867 7.724305 ATAAGAGTCGCAGTTTTGAACTAAA 57.276 32.000 0.00 0.00 40.46 1.85
2550 2886 4.037927 ACTCCCTCCGATCCAAAATAAGA 58.962 43.478 0.00 0.00 0.00 2.10
2649 2985 4.044336 TGGCAAATCAGAAAACAGTGTG 57.956 40.909 0.00 0.00 0.00 3.82
2719 3055 0.967887 CCTCTCGGAGAAGTGCCTCA 60.968 60.000 9.32 0.00 34.09 3.86
2734 3070 2.173569 ACCAGCACTCTGAAAAACCTCT 59.826 45.455 0.00 0.00 42.95 3.69
2743 3079 1.762370 TCAACTGAACCAGCACTCTGA 59.238 47.619 0.00 0.00 42.95 3.27
2898 3235 6.711277 TGAGGACTGCACAAAAGATATAGTT 58.289 36.000 0.00 0.00 0.00 2.24
2911 3249 3.758554 ACAAAACCATATGAGGACTGCAC 59.241 43.478 3.65 0.00 0.00 4.57
2943 3281 2.815211 GCAGCTGATCCGCGTTCA 60.815 61.111 20.43 7.11 34.40 3.18
3012 3350 2.758736 AGAACAAGTAGCTGCTCCTG 57.241 50.000 4.91 3.13 0.00 3.86
3026 3364 8.677148 AAACTAAGTTGCAGAAGAATAGAACA 57.323 30.769 0.00 0.00 0.00 3.18
3041 3379 5.743872 GGAAGCAAGTGACAAAACTAAGTTG 59.256 40.000 0.00 0.00 0.00 3.16
3138 3476 1.409427 GTTGTATCCTCCCTCTGACCG 59.591 57.143 0.00 0.00 0.00 4.79
3172 3510 6.480524 TGGAATACTGATTCACAAGAAACG 57.519 37.500 0.51 0.00 42.95 3.60
3350 3688 6.422776 AACTAATGAATACAAGGAAGCACG 57.577 37.500 0.00 0.00 0.00 5.34
3371 3710 6.025749 ACTAAGCCCAATAGCAAAAGAAAC 57.974 37.500 0.00 0.00 34.23 2.78
3397 3736 4.212004 GGAAAGCACAAATTCTCAAAAGGC 59.788 41.667 0.00 0.00 0.00 4.35
3398 3737 5.604565 AGGAAAGCACAAATTCTCAAAAGG 58.395 37.500 0.00 0.00 0.00 3.11
3399 3738 8.542953 GTTTAGGAAAGCACAAATTCTCAAAAG 58.457 33.333 0.00 0.00 0.00 2.27
3400 3739 8.257306 AGTTTAGGAAAGCACAAATTCTCAAAA 58.743 29.630 0.00 0.00 0.00 2.44
3401 3740 7.781056 AGTTTAGGAAAGCACAAATTCTCAAA 58.219 30.769 0.00 0.00 0.00 2.69
3402 3741 7.346751 AGTTTAGGAAAGCACAAATTCTCAA 57.653 32.000 0.00 0.00 0.00 3.02
3403 3742 6.959639 AGTTTAGGAAAGCACAAATTCTCA 57.040 33.333 0.00 0.00 0.00 3.27
3422 3762 8.807948 ACAGCACCATTACAAGATTATAGTTT 57.192 30.769 0.00 0.00 0.00 2.66
3459 3799 8.995220 GCCAATCAACGAATATTAGGTATAACA 58.005 33.333 0.48 0.00 0.00 2.41
3460 3800 8.995220 TGCCAATCAACGAATATTAGGTATAAC 58.005 33.333 0.48 0.00 0.00 1.89
3461 3801 9.214957 CTGCCAATCAACGAATATTAGGTATAA 57.785 33.333 0.48 0.00 0.00 0.98
3462 3802 8.372459 ACTGCCAATCAACGAATATTAGGTATA 58.628 33.333 0.48 0.00 0.00 1.47
3463 3803 7.173218 CACTGCCAATCAACGAATATTAGGTAT 59.827 37.037 0.48 0.00 0.00 2.73
3464 3804 6.481976 CACTGCCAATCAACGAATATTAGGTA 59.518 38.462 0.48 0.00 0.00 3.08
3465 3805 5.296780 CACTGCCAATCAACGAATATTAGGT 59.703 40.000 0.48 0.00 0.00 3.08
3466 3806 5.277974 CCACTGCCAATCAACGAATATTAGG 60.278 44.000 0.48 0.00 0.00 2.69
3467 3807 5.296780 ACCACTGCCAATCAACGAATATTAG 59.703 40.000 0.00 0.00 0.00 1.73
3468 3808 5.065859 CACCACTGCCAATCAACGAATATTA 59.934 40.000 0.00 0.00 0.00 0.98
3475 3815 1.081242 GCACCACTGCCAATCAACG 60.081 57.895 0.00 0.00 37.45 4.10
3478 3818 0.467844 ACAAGCACCACTGCCAATCA 60.468 50.000 0.00 0.00 45.53 2.57
3531 3871 7.041721 TCGAGCATCACTAGATAACACAAATT 58.958 34.615 0.00 0.00 31.88 1.82
3577 3917 3.134458 GCCATAACCTCTTGATCTTCCG 58.866 50.000 0.00 0.00 0.00 4.30
3664 4004 1.613437 CAGCAAAAACCAGGAACGGAT 59.387 47.619 0.00 0.00 0.00 4.18
3690 4030 5.526115 CGCATCCTGCAGATCAAATAAATT 58.474 37.500 17.39 0.00 45.36 1.82
3713 4053 5.818136 TTAAGTCATTTATGGCACTCTGC 57.182 39.130 0.00 0.00 44.08 4.26
3781 4121 5.299148 CAAAGCAAATCAAAATCCTCACCA 58.701 37.500 0.00 0.00 0.00 4.17
3782 4122 4.152938 GCAAAGCAAATCAAAATCCTCACC 59.847 41.667 0.00 0.00 0.00 4.02
3808 4148 7.039784 TGGAAAATATCAAATGCATAGGCCTAC 60.040 37.037 16.61 3.70 40.13 3.18
3851 4195 2.957680 TGGCACTCACAATGTCATTTGT 59.042 40.909 0.00 0.00 40.39 2.83
3852 4196 3.571571 CTGGCACTCACAATGTCATTTG 58.428 45.455 0.00 0.00 29.71 2.32
3889 4233 5.398603 TTTAATTTTGTCATCACCGGCAT 57.601 34.783 0.00 0.00 0.00 4.40
3932 4277 0.960364 TCTGCCGATTTCCAAGCCAC 60.960 55.000 0.00 0.00 0.00 5.01
3941 4286 1.164411 TGCAACGAATCTGCCGATTT 58.836 45.000 4.76 0.00 39.89 2.17
4060 4405 8.194769 CCAAATGGTATAAAATACAACAGGTCC 58.805 37.037 0.00 0.00 0.00 4.46
4094 4439 7.396540 ACACATCTTAGCAAATTTAAGGAGG 57.603 36.000 0.00 0.00 0.00 4.30
4095 4440 9.346725 GAAACACATCTTAGCAAATTTAAGGAG 57.653 33.333 0.00 0.00 0.00 3.69
4096 4441 8.855110 TGAAACACATCTTAGCAAATTTAAGGA 58.145 29.630 0.00 0.00 0.00 3.36
4097 4442 9.474920 TTGAAACACATCTTAGCAAATTTAAGG 57.525 29.630 0.00 0.00 0.00 2.69
4101 4446 9.598517 TCTTTTGAAACACATCTTAGCAAATTT 57.401 25.926 0.00 0.00 0.00 1.82
4223 4571 6.672147 ACTAATCAAACTTCAGCATCAACAC 58.328 36.000 0.00 0.00 0.00 3.32
4235 4583 7.888546 AGTGGGTATGCTTTACTAATCAAACTT 59.111 33.333 0.00 0.00 0.00 2.66
4264 4612 0.961753 GCTTTAAGTGGGTGCTGCTT 59.038 50.000 0.00 0.00 0.00 3.91
4265 4613 0.178992 TGCTTTAAGTGGGTGCTGCT 60.179 50.000 0.00 0.00 0.00 4.24
4266 4614 0.242017 CTGCTTTAAGTGGGTGCTGC 59.758 55.000 0.00 0.00 0.00 5.25
4267 4615 0.242017 GCTGCTTTAAGTGGGTGCTG 59.758 55.000 0.00 0.00 0.00 4.41
4268 4616 0.178992 TGCTGCTTTAAGTGGGTGCT 60.179 50.000 0.00 0.00 0.00 4.40
4269 4617 0.039165 GTGCTGCTTTAAGTGGGTGC 60.039 55.000 0.00 0.00 0.00 5.01
4270 4618 1.609208 AGTGCTGCTTTAAGTGGGTG 58.391 50.000 0.00 0.00 0.00 4.61
4271 4619 2.364972 AAGTGCTGCTTTAAGTGGGT 57.635 45.000 0.00 0.00 32.57 4.51
4272 4620 3.319122 AGAAAAGTGCTGCTTTAAGTGGG 59.681 43.478 0.00 0.00 45.91 4.61
4273 4621 4.574599 AGAAAAGTGCTGCTTTAAGTGG 57.425 40.909 0.00 0.00 45.91 4.00
4274 4622 8.579682 AATTTAGAAAAGTGCTGCTTTAAGTG 57.420 30.769 0.00 0.00 45.91 3.16
4277 4625 9.191995 GCTAAATTTAGAAAAGTGCTGCTTTAA 57.808 29.630 26.00 0.47 45.91 1.52
4278 4626 8.356657 TGCTAAATTTAGAAAAGTGCTGCTTTA 58.643 29.630 26.00 0.00 45.91 1.85
4321 4669 6.265196 TCACATACCCATTGAAATATTCTGGC 59.735 38.462 0.00 0.00 0.00 4.85
4379 4727 4.627035 TCGCAACAGAAACAGATATCACAG 59.373 41.667 5.32 0.00 0.00 3.66
4394 4742 2.594529 AACATAAAGCGTCGCAACAG 57.405 45.000 21.09 7.53 0.00 3.16
4403 4751 7.218773 CCAAGAACATCATGTAAACATAAAGCG 59.781 37.037 0.00 0.00 34.26 4.68
4439 4787 8.738645 AGAATTGCAATACTTAAGTTCCTAGG 57.261 34.615 14.49 0.82 0.00 3.02
4476 4824 8.168725 AGCATATGGATGATGGAAAGACTTTAT 58.831 33.333 4.56 0.00 34.73 1.40
4477 4825 7.446319 CAGCATATGGATGATGGAAAGACTTTA 59.554 37.037 4.56 0.00 44.21 1.85
4479 4827 5.768662 CAGCATATGGATGATGGAAAGACTT 59.231 40.000 4.56 0.00 44.21 3.01
4480 4828 5.314529 CAGCATATGGATGATGGAAAGACT 58.685 41.667 4.56 0.00 44.21 3.24
4481 4829 5.624344 CAGCATATGGATGATGGAAAGAC 57.376 43.478 4.56 0.00 44.21 3.01
4491 4841 3.437049 CAGCACATCTCAGCATATGGATG 59.563 47.826 14.53 14.53 40.04 3.51
4496 4846 4.588106 AGTAGACAGCACATCTCAGCATAT 59.412 41.667 0.00 0.00 0.00 1.78
4500 4850 2.957491 AGTAGACAGCACATCTCAGC 57.043 50.000 0.00 0.00 0.00 4.26
4511 4863 6.925211 TCTGGACAAGACAAATAGTAGACAG 58.075 40.000 0.00 0.00 0.00 3.51
4557 4909 3.371102 TTATTCTCGGGAGCATCTTCG 57.629 47.619 0.00 0.00 33.73 3.79
4569 4921 6.473778 CAGTTCTGTACAGTGGATTATTCTCG 59.526 42.308 21.99 0.00 0.00 4.04
4572 4924 7.907214 AACAGTTCTGTACAGTGGATTATTC 57.093 36.000 21.99 4.41 0.00 1.75
4652 5005 5.198965 AGTGAATGGCAAAGCATAAGAGAT 58.801 37.500 0.00 0.00 0.00 2.75
4699 5052 3.741344 AGTGATTCGTGTAACAACAGAGC 59.259 43.478 0.00 0.00 35.74 4.09
4754 5134 3.911365 CACGAAATCATTAACGCAGCAAA 59.089 39.130 0.00 0.00 0.00 3.68
4774 5154 8.038944 TGAGTAACCTGGTATTAAGAACATCAC 58.961 37.037 0.00 0.00 0.00 3.06
4813 5193 1.068333 CCAAGTGCATGGAAGAAACGG 60.068 52.381 0.00 0.00 43.54 4.44
4855 5235 2.807631 CTTTGCCATGCTGGACACGC 62.808 60.000 6.40 0.00 40.96 5.34
4900 5280 1.074775 AAGGGCAGTTTCGGCATGA 59.925 52.632 0.00 0.00 0.00 3.07
4976 5356 4.021981 GCAAAATACTTGAGCAGGAAAGGT 60.022 41.667 0.00 0.00 0.00 3.50
4988 5368 6.392354 AGATGACACATTGGCAAAATACTTG 58.608 36.000 3.01 0.00 39.86 3.16
4991 5371 7.275560 GGTTAAGATGACACATTGGCAAAATAC 59.724 37.037 3.01 0.00 39.86 1.89
4992 5372 7.319646 GGTTAAGATGACACATTGGCAAAATA 58.680 34.615 3.01 0.00 39.86 1.40
5001 5381 3.350219 AGGCGGTTAAGATGACACATT 57.650 42.857 0.00 0.00 0.00 2.71
5006 5386 5.372547 AAAGAAAAGGCGGTTAAGATGAC 57.627 39.130 0.00 0.00 0.00 3.06
5021 5401 2.878406 CAGCGGAGTGGAGAAAAGAAAA 59.122 45.455 0.00 0.00 0.00 2.29
5028 5408 1.568504 AATACCAGCGGAGTGGAGAA 58.431 50.000 4.02 0.00 40.44 2.87
5029 5409 1.568504 AAATACCAGCGGAGTGGAGA 58.431 50.000 4.02 0.00 40.44 3.71
5051 5431 3.620719 GCTCCAATCAGGACATCAGTCAA 60.621 47.826 0.00 0.00 46.80 3.18
5075 5455 4.336889 ACAAGAGAAAAGACCGACATGA 57.663 40.909 0.00 0.00 0.00 3.07
5078 5458 4.438200 GCAAAACAAGAGAAAAGACCGACA 60.438 41.667 0.00 0.00 0.00 4.35
5350 5730 2.255554 CTGCTGCTGCTGTTGCTG 59.744 61.111 17.00 4.65 40.48 4.41
5351 5731 3.671411 GCTGCTGCTGCTGTTGCT 61.671 61.111 22.10 0.00 39.81 3.91
5352 5732 3.898627 CTGCTGCTGCTGCTGTTGC 62.899 63.158 27.67 16.48 39.81 4.17
5353 5733 2.255554 CTGCTGCTGCTGCTGTTG 59.744 61.111 27.67 13.98 39.81 3.33
5411 5797 6.658188 AAAATCCGGGTCAAATTACAAAGA 57.342 33.333 0.00 0.00 0.00 2.52
5437 5823 7.437267 AGACACGACGAAGATAGAAAAGAAAAA 59.563 33.333 0.00 0.00 0.00 1.94
5625 6037 3.742433 ACTCCTCGAATTAGCCTCATG 57.258 47.619 0.00 0.00 0.00 3.07
5669 6081 1.016130 AGTTTGTGATCGAGGCTGCG 61.016 55.000 0.00 0.00 0.00 5.18
5675 6087 7.857389 TGATTTTTCTTTCAGTTTGTGATCGAG 59.143 33.333 0.00 0.00 34.17 4.04
5728 6140 4.993705 TTTTCCTTCCCTTCTAGCTTCA 57.006 40.909 0.00 0.00 0.00 3.02
5817 6230 6.294361 TCAACTATTGTGTGGTAGTGCTAT 57.706 37.500 0.00 0.00 31.83 2.97
5900 6314 2.977914 TGTTGCATGCTACCTTCTCTC 58.022 47.619 25.88 2.87 0.00 3.20
5901 6315 3.244700 ACTTGTTGCATGCTACCTTCTCT 60.245 43.478 25.88 3.60 0.00 3.10
6020 6434 9.796120 TCCTCAAAATGTTTTTGTTACTTACAG 57.204 29.630 11.30 1.49 38.19 2.74
6104 6536 6.721208 ACAGTGAAGGAAACATATGAATGGTT 59.279 34.615 10.38 0.00 45.88 3.67
6115 6547 5.475220 TGTTCTTGAAACAGTGAAGGAAACA 59.525 36.000 0.00 0.00 0.00 2.83
6185 6617 5.066505 CCCTGGTCAGTGTGATATTTTTAGC 59.933 44.000 0.00 0.00 0.00 3.09
6209 6642 1.670811 CAGTGTTATTGTCCCCGCATC 59.329 52.381 0.00 0.00 0.00 3.91
6215 6648 3.064820 CGCATAACCAGTGTTATTGTCCC 59.935 47.826 0.00 0.00 43.53 4.46
6222 6655 1.553248 AGAGGCGCATAACCAGTGTTA 59.447 47.619 10.83 0.00 41.03 2.41
6229 6662 0.733150 GGAAACAGAGGCGCATAACC 59.267 55.000 10.83 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.