Multiple sequence alignment - TraesCS2B01G194300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G194300 chr2B 100.000 2240 0 0 1 2240 171100284 171102523 0 4137
1 TraesCS2B01G194300 chr2B 91.677 805 53 7 674 1478 776822648 776823438 0 1103
2 TraesCS2B01G194300 chr2B 89.001 791 63 14 672 1459 600081456 600082225 0 957
3 TraesCS2B01G194300 chr2B 90.237 676 53 3 4 669 600079816 600080488 0 870
4 TraesCS2B01G194300 chr4B 92.456 676 41 2 4 669 38607429 38608104 0 957
5 TraesCS2B01G194300 chr4B 86.887 877 86 19 672 1545 411179152 411178302 0 955
6 TraesCS2B01G194300 chr4B 90.828 676 52 2 4 669 411180794 411180119 0 896
7 TraesCS2B01G194300 chr4B 90.093 535 40 4 967 1501 38608529 38609050 0 682
8 TraesCS2B01G194300 chr2D 87.269 864 72 23 672 1529 621362965 621363796 0 952
9 TraesCS2B01G194300 chr2D 91.420 676 48 2 4 669 621361322 621361997 0 918
10 TraesCS2B01G194300 chr2D 92.038 628 46 4 1613 2239 286850737 286851361 0 880
11 TraesCS2B01G194300 chr3D 86.782 870 94 9 672 1531 49963919 49964777 0 950
12 TraesCS2B01G194300 chr3D 92.939 609 43 0 1631 2239 446086972 446086364 0 887
13 TraesCS2B01G194300 chr3D 91.879 628 46 5 1613 2239 272536627 272537250 0 872
14 TraesCS2B01G194300 chr3D 89.911 674 58 4 6 669 535143163 535143836 0 859
15 TraesCS2B01G194300 chr1B 87.814 837 68 20 672 1492 7320047 7319229 0 950
16 TraesCS2B01G194300 chr1B 91.124 676 49 3 4 669 7321689 7321015 0 905
17 TraesCS2B01G194300 chr4A 92.171 677 40 6 4 669 645737180 645736506 0 944
18 TraesCS2B01G194300 chr4A 92.171 677 40 6 4 669 645769721 645769047 0 944
19 TraesCS2B01G194300 chr4A 90.924 628 45 5 674 1300 645768214 645767598 0 833
20 TraesCS2B01G194300 chr4A 90.764 628 46 8 674 1300 645735675 645735059 0 828
21 TraesCS2B01G194300 chr6B 88.706 788 65 14 674 1458 127848467 127847701 0 941
22 TraesCS2B01G194300 chr6B 93.388 605 40 0 1635 2239 591293212 591293816 0 896
23 TraesCS2B01G194300 chr4D 93.071 635 34 2 4 628 26192712 26193346 0 920
24 TraesCS2B01G194300 chr4D 86.421 707 47 25 961 1631 26202517 26203210 0 728
25 TraesCS2B01G194300 chr5D 93.410 607 39 1 1631 2237 191921778 191922383 0 898
26 TraesCS2B01G194300 chr1D 92.640 625 45 1 1615 2239 89503241 89503864 0 898
27 TraesCS2B01G194300 chr2A 93.268 609 39 1 1631 2239 695550701 695550095 0 896
28 TraesCS2B01G194300 chr1A 93.223 605 41 0 1635 2239 359694261 359693657 0 891
29 TraesCS2B01G194300 chr6D 92.951 610 42 1 1631 2240 384308198 384308806 0 887
30 TraesCS2B01G194300 chr3B 90.653 674 53 2 6 669 106957650 106956977 0 887
31 TraesCS2B01G194300 chr3B 90.356 674 55 4 6 669 8784674 8785347 0 876
32 TraesCS2B01G194300 chr5B 90.208 674 56 4 6 669 567869500 567868827 0 870


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G194300 chr2B 171100284 171102523 2239 False 4137.0 4137 100.0000 1 2240 1 chr2B.!!$F1 2239
1 TraesCS2B01G194300 chr2B 776822648 776823438 790 False 1103.0 1103 91.6770 674 1478 1 chr2B.!!$F2 804
2 TraesCS2B01G194300 chr2B 600079816 600082225 2409 False 913.5 957 89.6190 4 1459 2 chr2B.!!$F3 1455
3 TraesCS2B01G194300 chr4B 411178302 411180794 2492 True 925.5 955 88.8575 4 1545 2 chr4B.!!$R1 1541
4 TraesCS2B01G194300 chr4B 38607429 38609050 1621 False 819.5 957 91.2745 4 1501 2 chr4B.!!$F1 1497
5 TraesCS2B01G194300 chr2D 621361322 621363796 2474 False 935.0 952 89.3445 4 1529 2 chr2D.!!$F2 1525
6 TraesCS2B01G194300 chr2D 286850737 286851361 624 False 880.0 880 92.0380 1613 2239 1 chr2D.!!$F1 626
7 TraesCS2B01G194300 chr3D 49963919 49964777 858 False 950.0 950 86.7820 672 1531 1 chr3D.!!$F1 859
8 TraesCS2B01G194300 chr3D 446086364 446086972 608 True 887.0 887 92.9390 1631 2239 1 chr3D.!!$R1 608
9 TraesCS2B01G194300 chr3D 272536627 272537250 623 False 872.0 872 91.8790 1613 2239 1 chr3D.!!$F2 626
10 TraesCS2B01G194300 chr3D 535143163 535143836 673 False 859.0 859 89.9110 6 669 1 chr3D.!!$F3 663
11 TraesCS2B01G194300 chr1B 7319229 7321689 2460 True 927.5 950 89.4690 4 1492 2 chr1B.!!$R1 1488
12 TraesCS2B01G194300 chr4A 645767598 645769721 2123 True 888.5 944 91.5475 4 1300 2 chr4A.!!$R2 1296
13 TraesCS2B01G194300 chr4A 645735059 645737180 2121 True 886.0 944 91.4675 4 1300 2 chr4A.!!$R1 1296
14 TraesCS2B01G194300 chr6B 127847701 127848467 766 True 941.0 941 88.7060 674 1458 1 chr6B.!!$R1 784
15 TraesCS2B01G194300 chr6B 591293212 591293816 604 False 896.0 896 93.3880 1635 2239 1 chr6B.!!$F1 604
16 TraesCS2B01G194300 chr4D 26192712 26193346 634 False 920.0 920 93.0710 4 628 1 chr4D.!!$F1 624
17 TraesCS2B01G194300 chr4D 26202517 26203210 693 False 728.0 728 86.4210 961 1631 1 chr4D.!!$F2 670
18 TraesCS2B01G194300 chr5D 191921778 191922383 605 False 898.0 898 93.4100 1631 2237 1 chr5D.!!$F1 606
19 TraesCS2B01G194300 chr1D 89503241 89503864 623 False 898.0 898 92.6400 1615 2239 1 chr1D.!!$F1 624
20 TraesCS2B01G194300 chr2A 695550095 695550701 606 True 896.0 896 93.2680 1631 2239 1 chr2A.!!$R1 608
21 TraesCS2B01G194300 chr1A 359693657 359694261 604 True 891.0 891 93.2230 1635 2239 1 chr1A.!!$R1 604
22 TraesCS2B01G194300 chr6D 384308198 384308806 608 False 887.0 887 92.9510 1631 2240 1 chr6D.!!$F1 609
23 TraesCS2B01G194300 chr3B 106956977 106957650 673 True 887.0 887 90.6530 6 669 1 chr3B.!!$R1 663
24 TraesCS2B01G194300 chr3B 8784674 8785347 673 False 876.0 876 90.3560 6 669 1 chr3B.!!$F1 663
25 TraesCS2B01G194300 chr5B 567868827 567869500 673 True 870.0 870 90.2080 6 669 1 chr5B.!!$R1 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 65 1.00358 CTTGCTAGTGGTGGGACATGT 59.996 52.381 0.0 0.0 44.52 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1492 2581 1.004044 ACACTTATTCAGCAGCAGCCT 59.996 47.619 0.0 0.0 43.56 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 1.003580 CTTGCTAGTGGTGGGACATGT 59.996 52.381 0.00 0.00 44.52 3.21
64 66 1.945580 TGCTAGTGGTGGGACATGTA 58.054 50.000 0.00 0.00 44.52 2.29
78 80 4.636206 GGGACATGTACTGAAAATGAGGTC 59.364 45.833 8.27 0.00 0.00 3.85
186 188 5.431765 GGAGTTCATTAAGCTTCCAGATGA 58.568 41.667 0.00 6.44 0.00 2.92
203 205 5.439721 CAGATGATAATGTTCAACCTCCCA 58.560 41.667 0.00 0.00 0.00 4.37
216 218 7.671819 TGTTCAACCTCCCAATGATTACAAATA 59.328 33.333 0.00 0.00 0.00 1.40
252 254 1.625315 TGCACTTGGAGCACTAGATGT 59.375 47.619 0.00 0.00 37.02 3.06
270 272 8.535335 ACTAGATGTCTGTCATGTAGATGTTTT 58.465 33.333 20.11 0.90 46.71 2.43
276 278 8.367911 TGTCTGTCATGTAGATGTTTTAGTTCT 58.632 33.333 0.00 0.00 0.00 3.01
277 279 9.856488 GTCTGTCATGTAGATGTTTTAGTTCTA 57.144 33.333 0.00 0.00 0.00 2.10
282 284 8.812972 TCATGTAGATGTTTTAGTTCTAGTGGT 58.187 33.333 0.00 0.00 0.00 4.16
336 338 7.571026 CAAGATATCACTACTAACATGCTTGC 58.429 38.462 5.32 0.00 0.00 4.01
449 460 4.561326 GCCAAGATGCATTTGTTGTACCTT 60.561 41.667 0.00 0.00 0.00 3.50
560 571 2.814805 ACTTGGCTGATGCTGGTTAT 57.185 45.000 0.00 0.00 39.59 1.89
590 601 3.560105 GCCTGGATTTCTAGCTCCATTT 58.440 45.455 0.00 0.00 40.66 2.32
617 628 3.927142 CCACTCGGTATCACTTGAAAGAC 59.073 47.826 0.00 0.00 0.00 3.01
642 653 2.616510 GCATCAAGTCAGCTACAACCCT 60.617 50.000 0.00 0.00 0.00 4.34
669 680 9.515226 AAACAACCAAAGAGCTATATAACTTGA 57.485 29.630 0.00 0.00 0.00 3.02
670 681 9.515226 AACAACCAAAGAGCTATATAACTTGAA 57.485 29.630 0.00 0.00 0.00 2.69
998 1996 2.211250 ATCTTGTGCATGCTTGGAGT 57.789 45.000 20.33 0.00 0.00 3.85
1011 2009 2.489722 GCTTGGAGTCATGAAAGGTTCC 59.510 50.000 0.00 0.89 0.00 3.62
1018 2016 5.003096 AGTCATGAAAGGTTCCTTCCAAT 57.997 39.130 0.00 0.00 0.00 3.16
1064 2062 2.054799 AGAACTGCCCAAGGTTACTCA 58.945 47.619 0.00 0.00 0.00 3.41
1112 2110 4.532126 TGAAAAGATCCTAGACTTGGCTCA 59.468 41.667 9.06 0.00 0.00 4.26
1170 2168 5.106712 CCTTAGTGAACGCTTATTTCAAGCA 60.107 40.000 9.44 0.00 43.15 3.91
1171 2169 6.403636 CCTTAGTGAACGCTTATTTCAAGCAT 60.404 38.462 9.44 0.00 43.15 3.79
1200 2198 3.011708 AGTTGCCCATGGAGTTTAGGAAT 59.988 43.478 15.22 0.00 0.00 3.01
1218 2216 4.529377 AGGAATGAATGGTTGTTGATGCTT 59.471 37.500 0.00 0.00 0.00 3.91
1252 2250 7.546667 AGAACAACGTTTGAGTAGTTTCAAGTA 59.453 33.333 0.00 0.00 38.25 2.24
1253 2251 7.230466 ACAACGTTTGAGTAGTTTCAAGTAG 57.770 36.000 0.00 0.00 38.25 2.57
1254 2252 6.815142 ACAACGTTTGAGTAGTTTCAAGTAGT 59.185 34.615 0.00 0.00 38.25 2.73
1255 2253 7.332678 ACAACGTTTGAGTAGTTTCAAGTAGTT 59.667 33.333 0.00 0.00 38.25 2.24
1256 2254 7.838771 ACGTTTGAGTAGTTTCAAGTAGTTT 57.161 32.000 0.00 0.00 38.25 2.66
1257 2255 7.903062 ACGTTTGAGTAGTTTCAAGTAGTTTC 58.097 34.615 0.00 0.00 38.25 2.78
1258 2256 7.546667 ACGTTTGAGTAGTTTCAAGTAGTTTCA 59.453 33.333 0.00 0.00 38.25 2.69
1259 2257 8.385111 CGTTTGAGTAGTTTCAAGTAGTTTCAA 58.615 33.333 0.00 0.00 38.25 2.69
1260 2258 9.704098 GTTTGAGTAGTTTCAAGTAGTTTCAAG 57.296 33.333 0.00 0.00 38.25 3.02
1261 2259 9.444600 TTTGAGTAGTTTCAAGTAGTTTCAAGT 57.555 29.630 0.00 0.00 38.25 3.16
1321 2322 5.626142 TGAACTTGCTGGACCAATTACTAA 58.374 37.500 0.00 0.00 0.00 2.24
1380 2401 8.752005 ATATTATATGTTGTTGTTGGCTGAGT 57.248 30.769 0.00 0.00 0.00 3.41
1381 2402 4.771590 ATATGTTGTTGTTGGCTGAGTG 57.228 40.909 0.00 0.00 0.00 3.51
1382 2403 1.832883 TGTTGTTGTTGGCTGAGTGT 58.167 45.000 0.00 0.00 0.00 3.55
1383 2404 2.166829 TGTTGTTGTTGGCTGAGTGTT 58.833 42.857 0.00 0.00 0.00 3.32
1384 2405 2.094803 TGTTGTTGTTGGCTGAGTGTTG 60.095 45.455 0.00 0.00 0.00 3.33
1385 2406 0.455410 TGTTGTTGGCTGAGTGTTGC 59.545 50.000 0.00 0.00 0.00 4.17
1386 2407 0.740737 GTTGTTGGCTGAGTGTTGCT 59.259 50.000 0.00 0.00 0.00 3.91
1387 2408 0.740149 TTGTTGGCTGAGTGTTGCTG 59.260 50.000 0.00 0.00 0.00 4.41
1388 2409 0.107263 TGTTGGCTGAGTGTTGCTGA 60.107 50.000 0.00 0.00 0.00 4.26
1419 2440 3.940852 TGTTGCTGATGTATAAGTGCTGG 59.059 43.478 0.00 0.00 0.00 4.85
1422 2443 3.197549 TGCTGATGTATAAGTGCTGGTGA 59.802 43.478 0.00 0.00 0.00 4.02
1478 2532 2.354510 TGCTGTTGTGTAAGTGTTGCTC 59.645 45.455 0.00 0.00 0.00 4.26
1482 2536 3.181501 TGTTGTGTAAGTGTTGCTCTTGC 60.182 43.478 0.00 0.00 40.20 4.01
1484 2538 2.613595 TGTGTAAGTGTTGCTCTTGCTG 59.386 45.455 0.00 0.00 40.48 4.41
1492 2581 3.686241 GTGTTGCTCTTGCTGATATGTGA 59.314 43.478 0.00 0.00 40.48 3.58
1493 2582 3.937079 TGTTGCTCTTGCTGATATGTGAG 59.063 43.478 0.00 0.00 40.48 3.51
1512 2601 1.004044 AGGCTGCTGCTGAATAAGTGT 59.996 47.619 15.64 0.00 39.59 3.55
1515 2604 2.227388 GCTGCTGCTGAATAAGTGTTGT 59.773 45.455 10.92 0.00 36.03 3.32
1518 2607 2.982470 GCTGCTGAATAAGTGTTGTTGC 59.018 45.455 0.00 0.00 0.00 4.17
1519 2608 3.550639 GCTGCTGAATAAGTGTTGTTGCA 60.551 43.478 0.00 0.00 0.00 4.08
1526 2615 7.213216 TGAATAAGTGTTGTTGCATATGTGT 57.787 32.000 4.29 0.00 0.00 3.72
1531 2620 4.824537 AGTGTTGTTGCATATGTGTTGGTA 59.175 37.500 4.29 0.00 0.00 3.25
1537 2626 3.009026 TGCATATGTGTTGGTACTGCTG 58.991 45.455 4.29 0.00 0.00 4.41
1551 2640 6.338146 TGGTACTGCTGTATAAGTCATGTTC 58.662 40.000 6.73 0.00 0.00 3.18
1558 2647 9.696917 CTGCTGTATAAGTCATGTTCATGTATA 57.303 33.333 11.73 5.49 0.00 1.47
1581 2670 2.457598 TGTTGGTTTTGGGTAAGTGCA 58.542 42.857 0.00 0.00 0.00 4.57
1582 2671 3.034635 TGTTGGTTTTGGGTAAGTGCAT 58.965 40.909 0.00 0.00 0.00 3.96
1593 2682 8.726870 TTTGGGTAAGTGCATATCTACTTTAC 57.273 34.615 6.47 4.28 38.11 2.01
1596 2685 8.322828 TGGGTAAGTGCATATCTACTTTACAAA 58.677 33.333 6.47 0.00 38.11 2.83
1760 2849 5.126222 AGACTAGCTCGTTGATCAAAGATGA 59.874 40.000 21.83 11.39 40.57 2.92
1771 2860 8.454106 CGTTGATCAAAGATGATTAAGGTTTCT 58.546 33.333 15.34 0.00 46.30 2.52
1876 2965 6.201806 AGCTTAGCATATTGATCGTTCAGTTC 59.798 38.462 7.07 0.00 32.27 3.01
1882 2971 6.488817 CATATTGATCGTTCAGTTCATTGCA 58.511 36.000 0.00 0.00 32.27 4.08
1885 2974 4.973396 TGATCGTTCAGTTCATTGCAATC 58.027 39.130 9.53 0.00 0.00 2.67
1905 2994 7.697710 TGCAATCGCTTTCTTAATGTCAAATAG 59.302 33.333 0.00 0.00 39.64 1.73
1942 3031 4.142609 TGAGATTATGCAACTCCCAGAC 57.857 45.455 0.00 0.00 0.00 3.51
1986 3075 5.106869 TGCTATCAAACATCACAACGTAACC 60.107 40.000 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.217767 TCACAGTCACATACACACTACCTC 59.782 45.833 0.00 0.00 0.00 3.85
2 3 4.149598 TCACAGTCACATACACACTACCT 58.850 43.478 0.00 0.00 0.00 3.08
63 65 3.057104 TCGAAGCGACCTCATTTTCAGTA 60.057 43.478 0.00 0.00 0.00 2.74
64 66 2.069273 CGAAGCGACCTCATTTTCAGT 58.931 47.619 0.00 0.00 0.00 3.41
78 80 0.647410 CTTGTATGTGCCTCGAAGCG 59.353 55.000 0.82 0.00 34.65 4.68
186 188 7.838696 TGTAATCATTGGGAGGTTGAACATTAT 59.161 33.333 0.00 0.00 0.00 1.28
203 205 9.088987 ACCAAACCACTTCTATTTGTAATCATT 57.911 29.630 0.00 0.00 32.53 2.57
216 218 1.956477 GTGCATCACCAAACCACTTCT 59.044 47.619 0.00 0.00 0.00 2.85
282 284 0.331278 CATGTACCTCCCTTGGGCAA 59.669 55.000 0.00 0.00 0.00 4.52
336 338 1.072173 TCATGTTCCAGTCCACCACAG 59.928 52.381 0.00 0.00 0.00 3.66
412 414 2.097036 TCTTGGCGATTAGTTCTCCGA 58.903 47.619 0.00 0.00 31.35 4.55
560 571 1.843851 AGAAATCCAGGCCCATTCGTA 59.156 47.619 0.00 0.00 0.00 3.43
590 601 4.788679 TCAAGTGATACCGAGTGGATCTA 58.211 43.478 0.00 0.00 39.21 1.98
617 628 1.065926 TGTAGCTGACTTGATGCCCAG 60.066 52.381 0.00 0.00 0.00 4.45
669 680 2.612212 GTTCCACACATCGTCACTGTTT 59.388 45.455 0.00 0.00 0.00 2.83
670 681 2.210116 GTTCCACACATCGTCACTGTT 58.790 47.619 0.00 0.00 0.00 3.16
764 1762 7.663081 CCTTCACATTAGCCTTCATATACATGT 59.337 37.037 2.69 2.69 33.57 3.21
765 1763 7.663081 ACCTTCACATTAGCCTTCATATACATG 59.337 37.037 0.00 0.00 0.00 3.21
770 1768 6.043706 AGCTACCTTCACATTAGCCTTCATAT 59.956 38.462 0.00 0.00 39.29 1.78
775 1773 4.263506 ACAAGCTACCTTCACATTAGCCTT 60.264 41.667 0.00 0.00 39.29 4.35
963 1961 5.297776 GCACAAGATAGCATCACCTATTTGT 59.702 40.000 0.00 0.00 33.91 2.83
965 1963 5.439721 TGCACAAGATAGCATCACCTATTT 58.560 37.500 0.00 0.00 35.51 1.40
998 1996 5.360714 GCATATTGGAAGGAACCTTTCATGA 59.639 40.000 14.40 6.97 40.81 3.07
1011 2009 8.030692 TCAAGTGATTTCAAAGCATATTGGAAG 58.969 33.333 13.30 0.00 31.52 3.46
1018 2016 5.012239 AGGCTCAAGTGATTTCAAAGCATA 58.988 37.500 0.00 0.00 0.00 3.14
1064 2062 3.022406 GCAGCAAGGATTTCAAGAGGAT 58.978 45.455 0.00 0.00 0.00 3.24
1100 2098 4.223700 ACATGTCTGAATGAGCCAAGTCTA 59.776 41.667 0.00 0.00 0.00 2.59
1112 2110 1.812235 TGCTCGCAACATGTCTGAAT 58.188 45.000 0.00 0.00 0.00 2.57
1170 2168 3.052642 ACTCCATGGGCAACTCCATAAAT 60.053 43.478 13.02 0.00 45.08 1.40
1171 2169 2.311542 ACTCCATGGGCAACTCCATAAA 59.688 45.455 13.02 0.00 45.08 1.40
1200 2198 6.433716 TCTCATTAAGCATCAACAACCATTCA 59.566 34.615 0.00 0.00 0.00 2.57
1218 2216 7.924412 ACTACTCAAACGTTGTTCTTCTCATTA 59.076 33.333 0.00 0.00 0.00 1.90
1252 2250 5.897377 ACAACACTTAAGCACTTGAAACT 57.103 34.783 1.29 0.00 0.00 2.66
1253 2251 6.806739 AGAAACAACACTTAAGCACTTGAAAC 59.193 34.615 1.29 0.29 0.00 2.78
1254 2252 6.919721 AGAAACAACACTTAAGCACTTGAAA 58.080 32.000 1.29 0.00 0.00 2.69
1255 2253 6.509418 AGAAACAACACTTAAGCACTTGAA 57.491 33.333 1.29 0.00 0.00 2.69
1256 2254 6.509418 AAGAAACAACACTTAAGCACTTGA 57.491 33.333 1.29 0.00 0.00 3.02
1257 2255 6.586082 ACAAAGAAACAACACTTAAGCACTTG 59.414 34.615 1.29 4.30 0.00 3.16
1258 2256 6.687604 ACAAAGAAACAACACTTAAGCACTT 58.312 32.000 1.29 0.00 0.00 3.16
1259 2257 6.267496 ACAAAGAAACAACACTTAAGCACT 57.733 33.333 1.29 0.00 0.00 4.40
1260 2258 6.034577 GGAACAAAGAAACAACACTTAAGCAC 59.965 38.462 1.29 0.00 0.00 4.40
1261 2259 6.096695 GGAACAAAGAAACAACACTTAAGCA 58.903 36.000 1.29 0.00 0.00 3.91
1321 2322 5.072329 AGGCCTCATACATGTAGCAATAACT 59.928 40.000 11.91 1.84 0.00 2.24
1362 2363 2.378038 ACACTCAGCCAACAACAACAT 58.622 42.857 0.00 0.00 0.00 2.71
1379 2400 6.306356 CAGCAACACTTATAAATCAGCAACAC 59.694 38.462 0.00 0.00 0.00 3.32
1380 2401 6.206438 TCAGCAACACTTATAAATCAGCAACA 59.794 34.615 0.00 0.00 0.00 3.33
1381 2402 6.611381 TCAGCAACACTTATAAATCAGCAAC 58.389 36.000 0.00 0.00 0.00 4.17
1382 2403 6.816134 TCAGCAACACTTATAAATCAGCAA 57.184 33.333 0.00 0.00 0.00 3.91
1383 2404 6.375174 ACATCAGCAACACTTATAAATCAGCA 59.625 34.615 0.00 0.00 0.00 4.41
1384 2405 6.789262 ACATCAGCAACACTTATAAATCAGC 58.211 36.000 0.00 0.00 0.00 4.26
1419 2440 5.587289 ACAACACCACAAATACAACATCAC 58.413 37.500 0.00 0.00 0.00 3.06
1422 2443 6.701145 TGTACAACACCACAAATACAACAT 57.299 33.333 0.00 0.00 0.00 2.71
1478 2532 1.602851 GCAGCCTCACATATCAGCAAG 59.397 52.381 0.00 0.00 0.00 4.01
1482 2536 1.202663 AGCAGCAGCCTCACATATCAG 60.203 52.381 0.00 0.00 43.56 2.90
1484 2538 1.202615 TCAGCAGCAGCCTCACATATC 60.203 52.381 0.00 0.00 43.56 1.63
1492 2581 1.004044 ACACTTATTCAGCAGCAGCCT 59.996 47.619 0.00 0.00 43.56 4.58
1493 2582 1.457346 ACACTTATTCAGCAGCAGCC 58.543 50.000 0.00 0.00 43.56 4.85
1512 2601 4.320861 GCAGTACCAACACATATGCAACAA 60.321 41.667 1.58 0.00 32.58 2.83
1515 2604 3.439825 CAGCAGTACCAACACATATGCAA 59.560 43.478 1.58 0.00 34.71 4.08
1518 2607 7.710907 ACTTATACAGCAGTACCAACACATATG 59.289 37.037 0.00 0.00 31.96 1.78
1519 2608 7.792032 ACTTATACAGCAGTACCAACACATAT 58.208 34.615 0.00 0.00 31.96 1.78
1526 2615 6.294361 ACATGACTTATACAGCAGTACCAA 57.706 37.500 0.00 0.00 31.96 3.67
1531 2620 6.409704 ACATGAACATGACTTATACAGCAGT 58.590 36.000 19.56 0.00 41.20 4.40
1551 2640 9.364989 CTTACCCAAAACCAACAATTATACATG 57.635 33.333 0.00 0.00 0.00 3.21
1558 2647 4.080863 TGCACTTACCCAAAACCAACAATT 60.081 37.500 0.00 0.00 0.00 2.32
1706 2795 7.988028 AGAGGCTTACTAGGAACATTGTATTTC 59.012 37.037 0.00 0.00 0.00 2.17
1718 2807 6.014327 GCTAGTCTAGTAGAGGCTTACTAGGA 60.014 46.154 26.08 17.57 46.84 2.94
1797 2886 6.270000 TCTCCTAATGATGTGATCCCGTTATT 59.730 38.462 0.00 0.00 0.00 1.40
1838 2927 1.762957 GCTAAGCTAGTGGATGGGTCA 59.237 52.381 0.00 0.00 0.00 4.02
1876 2965 5.801444 TGACATTAAGAAAGCGATTGCAATG 59.199 36.000 18.59 10.36 46.23 2.82
1905 2994 9.243637 GCATAATCTCATAGTCGAAGGAATATC 57.756 37.037 0.00 0.00 31.46 1.63
1942 3031 3.338249 CACACAAGGTATTCCTCTGGTG 58.662 50.000 12.98 12.98 44.35 4.17
2046 3135 4.372656 GGAGTGACAAATCCTAATCTCGG 58.627 47.826 1.45 0.00 32.51 4.63
2102 3191 6.183360 TGCAAGGCTTCTTATGATGTGTATTG 60.183 38.462 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.