Multiple sequence alignment - TraesCS2B01G193700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G193700 chr2B 100.000 3248 0 0 1 3248 170398272 170395025 0.000000e+00 5999.0
1 TraesCS2B01G193700 chr2D 88.538 2853 133 81 510 3247 118551279 118554052 0.000000e+00 3278.0
2 TraesCS2B01G193700 chr2D 91.241 1096 41 15 508 1565 118519978 118521056 0.000000e+00 1441.0
3 TraesCS2B01G193700 chr2D 87.874 701 51 14 508 1175 118467346 118468045 0.000000e+00 793.0
4 TraesCS2B01G193700 chr2A 94.018 1839 63 20 505 2299 120461057 120462892 0.000000e+00 2743.0
5 TraesCS2B01G193700 chr2A 80.584 685 52 40 2623 3247 120463624 120464287 1.370000e-123 453.0
6 TraesCS2B01G193700 chr2A 86.402 353 16 15 2286 2613 120463200 120463545 1.110000e-94 357.0
7 TraesCS2B01G193700 chr2A 91.667 72 5 1 1258 1329 691842668 691842738 7.420000e-17 99.0
8 TraesCS2B01G193700 chr7B 97.101 69 2 0 1258 1326 611934212 611934280 2.050000e-22 117.0
9 TraesCS2B01G193700 chr7B 100.000 28 0 0 1194 1221 449873464 449873491 6.000000e-03 52.8
10 TraesCS2B01G193700 chr6D 97.101 69 2 0 1258 1326 9197092 9197024 2.050000e-22 117.0
11 TraesCS2B01G193700 chr5D 97.101 69 2 0 1258 1326 472749093 472749161 2.050000e-22 117.0
12 TraesCS2B01G193700 chr3B 98.438 64 1 0 1263 1326 703126887 703126950 2.650000e-21 113.0
13 TraesCS2B01G193700 chr3B 86.813 91 12 0 1125 1215 134979489 134979399 5.730000e-18 102.0
14 TraesCS2B01G193700 chr3B 89.474 76 8 0 1125 1200 134990202 134990277 2.670000e-16 97.1
15 TraesCS2B01G193700 chr3B 95.745 47 2 0 1061 1107 134979534 134979488 3.470000e-10 76.8
16 TraesCS2B01G193700 chr3B 94.000 50 3 0 1058 1107 134990154 134990203 3.470000e-10 76.8
17 TraesCS2B01G193700 chr6A 88.043 92 11 0 1125 1216 110333875 110333784 3.430000e-20 110.0
18 TraesCS2B01G193700 chr6A 95.455 44 1 1 1061 1104 110333919 110333877 5.810000e-08 69.4
19 TraesCS2B01G193700 chr4A 92.857 70 4 1 1258 1326 700729804 700729873 2.060000e-17 100.0
20 TraesCS2B01G193700 chr4A 78.846 156 13 10 1061 1216 594453658 594453523 1.610000e-13 87.9
21 TraesCS2B01G193700 chr5B 85.714 91 13 0 1125 1215 541936831 541936921 2.670000e-16 97.1
22 TraesCS2B01G193700 chr5B 95.000 40 2 0 1065 1104 541936790 541936829 2.710000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G193700 chr2B 170395025 170398272 3247 True 5999.000000 5999 100.000000 1 3248 1 chr2B.!!$R1 3247
1 TraesCS2B01G193700 chr2D 118551279 118554052 2773 False 3278.000000 3278 88.538000 510 3247 1 chr2D.!!$F3 2737
2 TraesCS2B01G193700 chr2D 118519978 118521056 1078 False 1441.000000 1441 91.241000 508 1565 1 chr2D.!!$F2 1057
3 TraesCS2B01G193700 chr2D 118467346 118468045 699 False 793.000000 793 87.874000 508 1175 1 chr2D.!!$F1 667
4 TraesCS2B01G193700 chr2A 120461057 120464287 3230 False 1184.333333 2743 87.001333 505 3247 3 chr2A.!!$F2 2742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 292 0.034896 GAGACCGGTTTGAGGCTGAA 59.965 55.0 9.42 0.0 0.00 3.02 F
293 294 0.034896 GACCGGTTTGAGGCTGAAGA 59.965 55.0 9.42 0.0 0.00 2.87 F
332 333 0.104672 TTGAGACACCAGGGGGAGAA 60.105 55.0 0.00 0.0 38.05 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1526 1590 1.298859 GAACACCGTCATGGACAGGC 61.299 60.000 0.0 0.0 42.00 4.85 R
2049 2113 3.403057 CCCACGCAGTTCACGTCG 61.403 66.667 0.0 0.0 41.61 5.12 R
2319 2702 3.535561 ACATCTCCCGAATTACTGCAAG 58.464 45.455 0.0 0.0 42.29 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.096443 CTCATGGAAAAAGCTCTCTAGGT 57.904 43.478 0.00 0.00 34.01 3.08
23 24 5.091261 TCATGGAAAAAGCTCTCTAGGTC 57.909 43.478 0.00 0.00 31.54 3.85
24 25 4.780021 TCATGGAAAAAGCTCTCTAGGTCT 59.220 41.667 0.00 0.00 31.54 3.85
25 26 5.958380 TCATGGAAAAAGCTCTCTAGGTCTA 59.042 40.000 0.00 0.00 31.54 2.59
26 27 6.613271 TCATGGAAAAAGCTCTCTAGGTCTAT 59.387 38.462 0.00 0.00 31.54 1.98
27 28 6.472686 TGGAAAAAGCTCTCTAGGTCTATC 57.527 41.667 0.00 0.00 31.54 2.08
28 29 6.198639 TGGAAAAAGCTCTCTAGGTCTATCT 58.801 40.000 0.00 0.00 31.54 1.98
29 30 6.670027 TGGAAAAAGCTCTCTAGGTCTATCTT 59.330 38.462 0.00 0.00 31.54 2.40
30 31 7.839705 TGGAAAAAGCTCTCTAGGTCTATCTTA 59.160 37.037 0.00 0.00 31.54 2.10
31 32 8.357402 GGAAAAAGCTCTCTAGGTCTATCTTAG 58.643 40.741 0.00 0.00 31.54 2.18
32 33 7.833285 AAAAGCTCTCTAGGTCTATCTTAGG 57.167 40.000 0.00 0.00 31.54 2.69
33 34 5.514500 AGCTCTCTAGGTCTATCTTAGGG 57.486 47.826 0.00 0.00 0.00 3.53
34 35 4.917656 AGCTCTCTAGGTCTATCTTAGGGT 59.082 45.833 0.00 0.00 29.67 4.34
35 36 6.092927 AGCTCTCTAGGTCTATCTTAGGGTA 58.907 44.000 0.00 0.00 29.67 3.69
36 37 6.214819 AGCTCTCTAGGTCTATCTTAGGGTAG 59.785 46.154 0.00 0.00 29.67 3.18
37 38 6.377245 TCTCTAGGTCTATCTTAGGGTAGC 57.623 45.833 0.00 0.00 29.67 3.58
38 39 5.850583 TCTCTAGGTCTATCTTAGGGTAGCA 59.149 44.000 0.00 0.00 29.67 3.49
39 40 6.013206 TCTCTAGGTCTATCTTAGGGTAGCAG 60.013 46.154 0.00 0.00 29.67 4.24
40 41 4.120946 AGGTCTATCTTAGGGTAGCAGG 57.879 50.000 0.00 0.00 0.00 4.85
41 42 3.467863 AGGTCTATCTTAGGGTAGCAGGT 59.532 47.826 0.00 0.00 0.00 4.00
42 43 3.574826 GGTCTATCTTAGGGTAGCAGGTG 59.425 52.174 0.00 0.00 0.00 4.00
43 44 4.471548 GTCTATCTTAGGGTAGCAGGTGA 58.528 47.826 0.00 0.00 0.00 4.02
44 45 4.278919 GTCTATCTTAGGGTAGCAGGTGAC 59.721 50.000 0.00 0.00 0.00 3.67
45 46 1.861982 TCTTAGGGTAGCAGGTGACC 58.138 55.000 0.00 0.00 34.75 4.02
49 50 3.741325 GGTAGCAGGTGACCCCAT 58.259 61.111 0.00 0.00 34.66 4.00
50 51 1.999346 GGTAGCAGGTGACCCCATT 59.001 57.895 0.00 0.00 34.66 3.16
51 52 1.209621 GGTAGCAGGTGACCCCATTA 58.790 55.000 0.00 0.00 34.66 1.90
52 53 1.774856 GGTAGCAGGTGACCCCATTAT 59.225 52.381 0.00 0.00 34.66 1.28
53 54 2.224548 GGTAGCAGGTGACCCCATTATC 60.225 54.545 0.00 0.00 34.66 1.75
54 55 1.898863 AGCAGGTGACCCCATTATCT 58.101 50.000 0.00 0.00 34.66 1.98
55 56 3.060479 AGCAGGTGACCCCATTATCTA 57.940 47.619 0.00 0.00 34.66 1.98
56 57 3.602608 AGCAGGTGACCCCATTATCTAT 58.397 45.455 0.00 0.00 34.66 1.98
57 58 3.584848 AGCAGGTGACCCCATTATCTATC 59.415 47.826 0.00 0.00 34.66 2.08
58 59 3.584848 GCAGGTGACCCCATTATCTATCT 59.415 47.826 0.00 0.00 34.66 1.98
59 60 4.042187 GCAGGTGACCCCATTATCTATCTT 59.958 45.833 0.00 0.00 34.66 2.40
60 61 5.456763 GCAGGTGACCCCATTATCTATCTTT 60.457 44.000 0.00 0.00 34.66 2.52
61 62 6.000219 CAGGTGACCCCATTATCTATCTTTG 59.000 44.000 0.00 0.00 34.66 2.77
62 63 5.672194 AGGTGACCCCATTATCTATCTTTGT 59.328 40.000 0.00 0.00 34.66 2.83
63 64 5.765182 GGTGACCCCATTATCTATCTTTGTG 59.235 44.000 0.00 0.00 0.00 3.33
64 65 5.765182 GTGACCCCATTATCTATCTTTGTGG 59.235 44.000 0.00 0.00 0.00 4.17
65 66 5.431731 TGACCCCATTATCTATCTTTGTGGT 59.568 40.000 0.00 0.00 0.00 4.16
66 67 5.694995 ACCCCATTATCTATCTTTGTGGTG 58.305 41.667 0.00 0.00 0.00 4.17
67 68 5.193728 ACCCCATTATCTATCTTTGTGGTGT 59.806 40.000 0.00 0.00 0.00 4.16
68 69 5.532406 CCCCATTATCTATCTTTGTGGTGTG 59.468 44.000 0.00 0.00 0.00 3.82
69 70 5.532406 CCCATTATCTATCTTTGTGGTGTGG 59.468 44.000 0.00 0.00 0.00 4.17
70 71 5.532406 CCATTATCTATCTTTGTGGTGTGGG 59.468 44.000 0.00 0.00 0.00 4.61
71 72 3.652057 ATCTATCTTTGTGGTGTGGGG 57.348 47.619 0.00 0.00 0.00 4.96
72 73 1.633432 TCTATCTTTGTGGTGTGGGGG 59.367 52.381 0.00 0.00 0.00 5.40
73 74 1.354368 CTATCTTTGTGGTGTGGGGGT 59.646 52.381 0.00 0.00 0.00 4.95
74 75 0.178964 ATCTTTGTGGTGTGGGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
75 76 1.832167 CTTTGTGGTGTGGGGGTGG 60.832 63.158 0.00 0.00 0.00 4.61
76 77 2.291402 CTTTGTGGTGTGGGGGTGGA 62.291 60.000 0.00 0.00 0.00 4.02
77 78 2.575455 TTTGTGGTGTGGGGGTGGAC 62.575 60.000 0.00 0.00 0.00 4.02
78 79 4.636435 GTGGTGTGGGGGTGGACG 62.636 72.222 0.00 0.00 0.00 4.79
91 92 4.265056 GGACGGGTGGTGCAGGTT 62.265 66.667 0.00 0.00 36.89 3.50
92 93 2.668550 GACGGGTGGTGCAGGTTC 60.669 66.667 0.00 0.00 0.00 3.62
93 94 4.619227 ACGGGTGGTGCAGGTTCG 62.619 66.667 0.00 0.00 0.00 3.95
101 102 4.257654 TGCAGGTTCGCCGGGAAA 62.258 61.111 2.18 0.00 43.66 3.13
102 103 2.750237 GCAGGTTCGCCGGGAAAT 60.750 61.111 2.18 0.00 43.66 2.17
103 104 1.450669 GCAGGTTCGCCGGGAAATA 60.451 57.895 2.18 0.00 43.66 1.40
104 105 1.027792 GCAGGTTCGCCGGGAAATAA 61.028 55.000 2.18 0.00 43.66 1.40
105 106 1.455248 CAGGTTCGCCGGGAAATAAA 58.545 50.000 2.18 0.00 43.66 1.40
106 107 1.131693 CAGGTTCGCCGGGAAATAAAC 59.868 52.381 2.18 0.00 43.66 2.01
107 108 1.003928 AGGTTCGCCGGGAAATAAACT 59.996 47.619 2.18 0.00 43.66 2.66
108 109 1.814394 GGTTCGCCGGGAAATAAACTT 59.186 47.619 2.18 0.00 36.14 2.66
109 110 2.414957 GGTTCGCCGGGAAATAAACTTG 60.415 50.000 2.18 0.00 36.14 3.16
110 111 2.188062 TCGCCGGGAAATAAACTTGT 57.812 45.000 2.18 0.00 0.00 3.16
111 112 2.078392 TCGCCGGGAAATAAACTTGTC 58.922 47.619 2.18 0.00 0.00 3.18
112 113 1.807742 CGCCGGGAAATAAACTTGTCA 59.192 47.619 2.18 0.00 0.00 3.58
113 114 2.422127 CGCCGGGAAATAAACTTGTCAT 59.578 45.455 2.18 0.00 0.00 3.06
114 115 3.119637 CGCCGGGAAATAAACTTGTCATT 60.120 43.478 2.18 0.00 0.00 2.57
115 116 4.173256 GCCGGGAAATAAACTTGTCATTG 58.827 43.478 2.18 0.00 0.00 2.82
116 117 4.173256 CCGGGAAATAAACTTGTCATTGC 58.827 43.478 0.00 0.00 0.00 3.56
117 118 4.173256 CGGGAAATAAACTTGTCATTGCC 58.827 43.478 0.00 0.00 0.00 4.52
118 119 4.173256 GGGAAATAAACTTGTCATTGCCG 58.827 43.478 0.00 0.00 29.12 5.69
119 120 4.082463 GGGAAATAAACTTGTCATTGCCGA 60.082 41.667 0.00 0.00 29.12 5.54
120 121 5.095490 GGAAATAAACTTGTCATTGCCGAG 58.905 41.667 0.00 0.00 0.00 4.63
121 122 4.701956 AATAAACTTGTCATTGCCGAGG 57.298 40.909 0.00 0.00 0.00 4.63
122 123 1.981256 AAACTTGTCATTGCCGAGGT 58.019 45.000 0.00 0.00 0.00 3.85
123 124 1.981256 AACTTGTCATTGCCGAGGTT 58.019 45.000 0.00 0.00 0.00 3.50
124 125 2.851263 ACTTGTCATTGCCGAGGTTA 57.149 45.000 0.00 0.00 0.00 2.85
125 126 2.699954 ACTTGTCATTGCCGAGGTTAG 58.300 47.619 0.00 0.00 0.00 2.34
126 127 2.009774 CTTGTCATTGCCGAGGTTAGG 58.990 52.381 0.00 0.00 0.00 2.69
127 128 1.271856 TGTCATTGCCGAGGTTAGGA 58.728 50.000 0.00 0.00 0.00 2.94
128 129 1.626321 TGTCATTGCCGAGGTTAGGAA 59.374 47.619 0.00 0.00 0.00 3.36
129 130 2.280628 GTCATTGCCGAGGTTAGGAAG 58.719 52.381 0.00 0.00 0.00 3.46
130 131 2.093658 GTCATTGCCGAGGTTAGGAAGA 60.094 50.000 0.00 0.00 0.00 2.87
131 132 2.771943 TCATTGCCGAGGTTAGGAAGAT 59.228 45.455 0.00 0.00 0.00 2.40
132 133 2.691409 TTGCCGAGGTTAGGAAGATG 57.309 50.000 0.00 0.00 0.00 2.90
133 134 0.830648 TGCCGAGGTTAGGAAGATGG 59.169 55.000 0.00 0.00 0.00 3.51
134 135 0.831307 GCCGAGGTTAGGAAGATGGT 59.169 55.000 0.00 0.00 0.00 3.55
135 136 1.209747 GCCGAGGTTAGGAAGATGGTT 59.790 52.381 0.00 0.00 0.00 3.67
136 137 2.906354 CCGAGGTTAGGAAGATGGTTG 58.094 52.381 0.00 0.00 0.00 3.77
137 138 2.420129 CCGAGGTTAGGAAGATGGTTGG 60.420 54.545 0.00 0.00 0.00 3.77
138 139 2.644676 GAGGTTAGGAAGATGGTTGGC 58.355 52.381 0.00 0.00 0.00 4.52
139 140 1.065418 AGGTTAGGAAGATGGTTGGCG 60.065 52.381 0.00 0.00 0.00 5.69
140 141 1.379527 GTTAGGAAGATGGTTGGCGG 58.620 55.000 0.00 0.00 0.00 6.13
141 142 0.393808 TTAGGAAGATGGTTGGCGGC 60.394 55.000 0.00 0.00 0.00 6.53
142 143 2.587322 TAGGAAGATGGTTGGCGGCG 62.587 60.000 0.51 0.51 0.00 6.46
143 144 3.508840 GAAGATGGTTGGCGGCGG 61.509 66.667 9.78 0.00 0.00 6.13
159 160 3.807538 GGCCGCAGCATGACAGTG 61.808 66.667 0.00 0.00 42.56 3.66
160 161 3.807538 GCCGCAGCATGACAGTGG 61.808 66.667 0.00 2.05 39.69 4.00
161 162 3.129502 CCGCAGCATGACAGTGGG 61.130 66.667 0.00 0.00 39.69 4.61
162 163 3.807538 CGCAGCATGACAGTGGGC 61.808 66.667 0.00 0.00 39.69 5.36
163 164 3.807538 GCAGCATGACAGTGGGCG 61.808 66.667 0.00 0.00 39.69 6.13
164 165 2.359107 CAGCATGACAGTGGGCGT 60.359 61.111 0.00 0.00 39.69 5.68
165 166 2.046892 AGCATGACAGTGGGCGTC 60.047 61.111 0.00 0.00 0.00 5.19
166 167 3.490759 GCATGACAGTGGGCGTCG 61.491 66.667 0.00 0.00 36.11 5.12
167 168 2.815211 CATGACAGTGGGCGTCGG 60.815 66.667 0.00 0.00 36.11 4.79
168 169 2.994995 ATGACAGTGGGCGTCGGA 60.995 61.111 0.00 0.00 36.11 4.55
169 170 2.359169 ATGACAGTGGGCGTCGGAT 61.359 57.895 0.00 0.00 36.11 4.18
170 171 2.509336 GACAGTGGGCGTCGGATG 60.509 66.667 0.00 0.00 0.00 3.51
171 172 2.994995 ACAGTGGGCGTCGGATGA 60.995 61.111 0.33 0.00 0.00 2.92
172 173 2.202797 CAGTGGGCGTCGGATGAG 60.203 66.667 0.33 0.00 0.00 2.90
173 174 3.461773 AGTGGGCGTCGGATGAGG 61.462 66.667 0.33 0.00 0.00 3.86
174 175 4.530857 GTGGGCGTCGGATGAGGG 62.531 72.222 0.33 0.00 0.00 4.30
177 178 3.917760 GGCGTCGGATGAGGGGAG 61.918 72.222 0.33 0.00 0.00 4.30
178 179 3.917760 GCGTCGGATGAGGGGAGG 61.918 72.222 0.33 0.00 0.00 4.30
179 180 3.917760 CGTCGGATGAGGGGAGGC 61.918 72.222 0.00 0.00 0.00 4.70
180 181 2.444895 GTCGGATGAGGGGAGGCT 60.445 66.667 0.00 0.00 0.00 4.58
181 182 2.444706 TCGGATGAGGGGAGGCTG 60.445 66.667 0.00 0.00 0.00 4.85
182 183 4.247380 CGGATGAGGGGAGGCTGC 62.247 72.222 0.00 0.00 0.00 5.25
183 184 3.883549 GGATGAGGGGAGGCTGCC 61.884 72.222 17.94 17.94 0.00 4.85
184 185 4.247380 GATGAGGGGAGGCTGCCG 62.247 72.222 19.46 0.00 0.00 5.69
223 224 4.681978 GCAACGGAGGCAGACGGT 62.682 66.667 0.00 0.00 0.00 4.83
224 225 2.030562 CAACGGAGGCAGACGGTT 59.969 61.111 0.00 0.00 0.00 4.44
225 226 1.290955 CAACGGAGGCAGACGGTTA 59.709 57.895 0.00 0.00 31.56 2.85
226 227 0.736325 CAACGGAGGCAGACGGTTAG 60.736 60.000 0.00 0.00 31.56 2.34
227 228 0.896940 AACGGAGGCAGACGGTTAGA 60.897 55.000 0.00 0.00 0.00 2.10
228 229 1.139095 CGGAGGCAGACGGTTAGAC 59.861 63.158 0.00 0.00 0.00 2.59
229 230 1.592400 CGGAGGCAGACGGTTAGACA 61.592 60.000 0.00 0.00 0.00 3.41
230 231 0.173708 GGAGGCAGACGGTTAGACAG 59.826 60.000 0.00 0.00 0.00 3.51
231 232 0.173708 GAGGCAGACGGTTAGACAGG 59.826 60.000 0.00 0.00 0.00 4.00
232 233 1.218316 GGCAGACGGTTAGACAGGG 59.782 63.158 0.00 0.00 0.00 4.45
233 234 1.218316 GCAGACGGTTAGACAGGGG 59.782 63.158 0.00 0.00 0.00 4.79
234 235 1.218316 CAGACGGTTAGACAGGGGC 59.782 63.158 0.00 0.00 0.00 5.80
235 236 1.078710 AGACGGTTAGACAGGGGCT 59.921 57.895 0.00 0.00 0.00 5.19
236 237 1.218316 GACGGTTAGACAGGGGCTG 59.782 63.158 0.00 0.00 37.52 4.85
237 238 2.240162 GACGGTTAGACAGGGGCTGG 62.240 65.000 0.00 0.00 35.51 4.85
238 239 1.987855 CGGTTAGACAGGGGCTGGA 60.988 63.158 0.00 0.00 35.51 3.86
239 240 1.338136 CGGTTAGACAGGGGCTGGAT 61.338 60.000 0.00 0.00 35.51 3.41
240 241 0.470341 GGTTAGACAGGGGCTGGATC 59.530 60.000 0.00 0.00 35.51 3.36
241 242 0.105039 GTTAGACAGGGGCTGGATCG 59.895 60.000 0.00 0.00 35.51 3.69
242 243 1.048724 TTAGACAGGGGCTGGATCGG 61.049 60.000 0.00 0.00 35.51 4.18
243 244 2.238319 TAGACAGGGGCTGGATCGGT 62.238 60.000 0.00 0.00 35.51 4.69
244 245 3.391665 GACAGGGGCTGGATCGGTG 62.392 68.421 0.00 0.00 35.51 4.94
245 246 4.181010 CAGGGGCTGGATCGGTGG 62.181 72.222 0.00 0.00 0.00 4.61
248 249 4.489771 GGGCTGGATCGGTGGGTG 62.490 72.222 0.00 0.00 0.00 4.61
249 250 4.489771 GGCTGGATCGGTGGGTGG 62.490 72.222 0.00 0.00 0.00 4.61
250 251 4.489771 GCTGGATCGGTGGGTGGG 62.490 72.222 0.00 0.00 0.00 4.61
251 252 2.687200 CTGGATCGGTGGGTGGGA 60.687 66.667 0.00 0.00 0.00 4.37
252 253 2.687200 TGGATCGGTGGGTGGGAG 60.687 66.667 0.00 0.00 0.00 4.30
253 254 2.365105 GGATCGGTGGGTGGGAGA 60.365 66.667 0.00 0.00 0.00 3.71
254 255 2.435693 GGATCGGTGGGTGGGAGAG 61.436 68.421 0.00 0.00 0.00 3.20
255 256 2.365635 ATCGGTGGGTGGGAGAGG 60.366 66.667 0.00 0.00 0.00 3.69
256 257 2.873557 GATCGGTGGGTGGGAGAGGA 62.874 65.000 0.00 0.00 0.00 3.71
257 258 2.471084 ATCGGTGGGTGGGAGAGGAA 62.471 60.000 0.00 0.00 0.00 3.36
258 259 2.660064 CGGTGGGTGGGAGAGGAAG 61.660 68.421 0.00 0.00 0.00 3.46
259 260 1.229529 GGTGGGTGGGAGAGGAAGA 60.230 63.158 0.00 0.00 0.00 2.87
260 261 0.840722 GGTGGGTGGGAGAGGAAGAA 60.841 60.000 0.00 0.00 0.00 2.52
261 262 0.615850 GTGGGTGGGAGAGGAAGAAG 59.384 60.000 0.00 0.00 0.00 2.85
262 263 0.491823 TGGGTGGGAGAGGAAGAAGA 59.508 55.000 0.00 0.00 0.00 2.87
263 264 1.199615 GGGTGGGAGAGGAAGAAGAG 58.800 60.000 0.00 0.00 0.00 2.85
264 265 1.273324 GGGTGGGAGAGGAAGAAGAGA 60.273 57.143 0.00 0.00 0.00 3.10
265 266 2.541466 GGTGGGAGAGGAAGAAGAGAA 58.459 52.381 0.00 0.00 0.00 2.87
266 267 2.907042 GGTGGGAGAGGAAGAAGAGAAA 59.093 50.000 0.00 0.00 0.00 2.52
267 268 3.307129 GGTGGGAGAGGAAGAAGAGAAAC 60.307 52.174 0.00 0.00 0.00 2.78
268 269 3.325135 GTGGGAGAGGAAGAAGAGAAACA 59.675 47.826 0.00 0.00 0.00 2.83
269 270 3.973973 TGGGAGAGGAAGAAGAGAAACAA 59.026 43.478 0.00 0.00 0.00 2.83
270 271 4.599241 TGGGAGAGGAAGAAGAGAAACAAT 59.401 41.667 0.00 0.00 0.00 2.71
271 272 5.785423 TGGGAGAGGAAGAAGAGAAACAATA 59.215 40.000 0.00 0.00 0.00 1.90
272 273 6.070538 TGGGAGAGGAAGAAGAGAAACAATAG 60.071 42.308 0.00 0.00 0.00 1.73
273 274 6.155393 GGGAGAGGAAGAAGAGAAACAATAGA 59.845 42.308 0.00 0.00 0.00 1.98
274 275 7.264947 GGAGAGGAAGAAGAGAAACAATAGAG 58.735 42.308 0.00 0.00 0.00 2.43
275 276 7.123547 GGAGAGGAAGAAGAGAAACAATAGAGA 59.876 40.741 0.00 0.00 0.00 3.10
276 277 7.836842 AGAGGAAGAAGAGAAACAATAGAGAC 58.163 38.462 0.00 0.00 0.00 3.36
277 278 6.941857 AGGAAGAAGAGAAACAATAGAGACC 58.058 40.000 0.00 0.00 0.00 3.85
278 279 5.808030 GGAAGAAGAGAAACAATAGAGACCG 59.192 44.000 0.00 0.00 0.00 4.79
279 280 5.331876 AGAAGAGAAACAATAGAGACCGG 57.668 43.478 0.00 0.00 0.00 5.28
280 281 4.773149 AGAAGAGAAACAATAGAGACCGGT 59.227 41.667 6.92 6.92 0.00 5.28
281 282 5.246429 AGAAGAGAAACAATAGAGACCGGTT 59.754 40.000 9.42 0.00 0.00 4.44
282 283 5.485209 AGAGAAACAATAGAGACCGGTTT 57.515 39.130 9.42 1.19 34.64 3.27
283 284 5.238583 AGAGAAACAATAGAGACCGGTTTG 58.761 41.667 9.42 11.82 32.32 2.93
284 285 5.011738 AGAGAAACAATAGAGACCGGTTTGA 59.988 40.000 20.08 1.12 32.32 2.69
285 286 5.238583 AGAAACAATAGAGACCGGTTTGAG 58.761 41.667 20.08 5.55 32.32 3.02
286 287 3.611766 ACAATAGAGACCGGTTTGAGG 57.388 47.619 20.08 5.68 0.00 3.86
287 288 2.280628 CAATAGAGACCGGTTTGAGGC 58.719 52.381 9.42 0.00 0.00 4.70
288 289 1.867363 ATAGAGACCGGTTTGAGGCT 58.133 50.000 9.42 0.00 0.00 4.58
289 290 0.895530 TAGAGACCGGTTTGAGGCTG 59.104 55.000 9.42 0.00 0.00 4.85
290 291 0.832135 AGAGACCGGTTTGAGGCTGA 60.832 55.000 9.42 0.00 0.00 4.26
291 292 0.034896 GAGACCGGTTTGAGGCTGAA 59.965 55.000 9.42 0.00 0.00 3.02
292 293 0.035458 AGACCGGTTTGAGGCTGAAG 59.965 55.000 9.42 0.00 0.00 3.02
293 294 0.034896 GACCGGTTTGAGGCTGAAGA 59.965 55.000 9.42 0.00 0.00 2.87
294 295 0.250338 ACCGGTTTGAGGCTGAAGAC 60.250 55.000 0.00 0.00 0.00 3.01
295 296 1.291877 CCGGTTTGAGGCTGAAGACG 61.292 60.000 0.00 0.00 0.00 4.18
296 297 0.319555 CGGTTTGAGGCTGAAGACGA 60.320 55.000 6.32 0.00 0.00 4.20
297 298 1.872237 CGGTTTGAGGCTGAAGACGAA 60.872 52.381 6.32 0.00 0.00 3.85
298 299 1.801178 GGTTTGAGGCTGAAGACGAAG 59.199 52.381 0.00 0.00 0.00 3.79
299 300 1.195674 GTTTGAGGCTGAAGACGAAGC 59.804 52.381 0.00 0.00 38.76 3.86
300 301 0.667487 TTGAGGCTGAAGACGAAGCG 60.667 55.000 0.00 0.00 40.46 4.68
301 302 1.080434 GAGGCTGAAGACGAAGCGT 60.080 57.895 0.00 0.00 45.10 5.07
302 303 0.667792 GAGGCTGAAGACGAAGCGTT 60.668 55.000 0.00 0.00 41.37 4.84
303 304 0.601558 AGGCTGAAGACGAAGCGTTA 59.398 50.000 0.00 0.00 41.37 3.18
304 305 1.000506 AGGCTGAAGACGAAGCGTTAA 59.999 47.619 0.00 0.00 41.37 2.01
305 306 2.000447 GGCTGAAGACGAAGCGTTAAT 59.000 47.619 0.00 0.00 41.37 1.40
306 307 2.029365 GGCTGAAGACGAAGCGTTAATC 59.971 50.000 0.00 0.00 41.37 1.75
307 308 2.029365 GCTGAAGACGAAGCGTTAATCC 59.971 50.000 0.00 0.00 41.37 3.01
308 309 3.250744 CTGAAGACGAAGCGTTAATCCA 58.749 45.455 0.00 0.00 41.37 3.41
309 310 3.655486 TGAAGACGAAGCGTTAATCCAA 58.345 40.909 0.00 0.00 41.37 3.53
310 311 3.430895 TGAAGACGAAGCGTTAATCCAAC 59.569 43.478 0.00 0.00 41.37 3.77
311 312 3.314541 AGACGAAGCGTTAATCCAACT 57.685 42.857 0.00 0.00 41.37 3.16
312 313 2.993899 AGACGAAGCGTTAATCCAACTG 59.006 45.455 0.00 0.00 41.37 3.16
313 314 2.735134 GACGAAGCGTTAATCCAACTGT 59.265 45.455 0.00 0.00 41.37 3.55
314 315 3.135994 ACGAAGCGTTAATCCAACTGTT 58.864 40.909 0.00 0.00 36.35 3.16
315 316 3.059188 ACGAAGCGTTAATCCAACTGTTG 60.059 43.478 13.50 13.50 36.35 3.33
316 317 3.185594 CGAAGCGTTAATCCAACTGTTGA 59.814 43.478 21.49 8.39 34.77 3.18
317 318 4.666655 CGAAGCGTTAATCCAACTGTTGAG 60.667 45.833 21.49 11.60 34.77 3.02
318 319 4.002906 AGCGTTAATCCAACTGTTGAGA 57.997 40.909 21.49 16.11 34.77 3.27
319 320 3.746492 AGCGTTAATCCAACTGTTGAGAC 59.254 43.478 21.49 10.67 34.77 3.36
320 321 3.496884 GCGTTAATCCAACTGTTGAGACA 59.503 43.478 21.49 6.58 34.77 3.41
321 322 4.610680 GCGTTAATCCAACTGTTGAGACAC 60.611 45.833 21.49 12.39 34.77 3.67
322 323 4.084013 CGTTAATCCAACTGTTGAGACACC 60.084 45.833 21.49 4.92 34.77 4.16
323 324 3.576078 AATCCAACTGTTGAGACACCA 57.424 42.857 21.49 0.00 0.00 4.17
324 325 2.620251 TCCAACTGTTGAGACACCAG 57.380 50.000 21.49 2.74 0.00 4.00
325 326 1.140852 TCCAACTGTTGAGACACCAGG 59.859 52.381 21.49 1.92 0.00 4.45
326 327 1.597742 CAACTGTTGAGACACCAGGG 58.402 55.000 15.26 0.00 0.00 4.45
327 328 0.474184 AACTGTTGAGACACCAGGGG 59.526 55.000 0.00 0.00 0.00 4.79
328 329 1.376466 CTGTTGAGACACCAGGGGG 59.624 63.158 0.00 0.00 41.29 5.40
329 330 1.074090 TGTTGAGACACCAGGGGGA 60.074 57.895 0.00 0.00 38.05 4.81
330 331 1.127567 TGTTGAGACACCAGGGGGAG 61.128 60.000 0.00 0.00 38.05 4.30
331 332 0.836400 GTTGAGACACCAGGGGGAGA 60.836 60.000 0.00 0.00 38.05 3.71
332 333 0.104672 TTGAGACACCAGGGGGAGAA 60.105 55.000 0.00 0.00 38.05 2.87
333 334 0.119155 TGAGACACCAGGGGGAGAAT 59.881 55.000 0.00 0.00 38.05 2.40
334 335 0.833949 GAGACACCAGGGGGAGAATC 59.166 60.000 0.00 0.00 38.05 2.52
335 336 0.419459 AGACACCAGGGGGAGAATCT 59.581 55.000 0.00 0.00 38.05 2.40
336 337 1.651770 AGACACCAGGGGGAGAATCTA 59.348 52.381 0.00 0.00 38.05 1.98
337 338 1.763545 GACACCAGGGGGAGAATCTAC 59.236 57.143 0.00 0.00 38.05 2.59
338 339 1.366435 ACACCAGGGGGAGAATCTACT 59.634 52.381 0.00 0.00 38.05 2.57
339 340 1.765314 CACCAGGGGGAGAATCTACTG 59.235 57.143 0.00 0.00 38.05 2.74
340 341 1.366435 ACCAGGGGGAGAATCTACTGT 59.634 52.381 0.00 0.00 38.05 3.55
341 342 2.225908 ACCAGGGGGAGAATCTACTGTT 60.226 50.000 0.00 0.00 38.05 3.16
342 343 2.846827 CCAGGGGGAGAATCTACTGTTT 59.153 50.000 0.00 0.00 35.59 2.83
343 344 3.267031 CCAGGGGGAGAATCTACTGTTTT 59.733 47.826 0.00 0.00 35.59 2.43
344 345 4.263949 CCAGGGGGAGAATCTACTGTTTTT 60.264 45.833 0.00 0.00 35.59 1.94
345 346 4.944317 CAGGGGGAGAATCTACTGTTTTTC 59.056 45.833 0.00 0.00 33.73 2.29
346 347 4.601857 AGGGGGAGAATCTACTGTTTTTCA 59.398 41.667 0.00 0.00 33.73 2.69
347 348 4.944317 GGGGGAGAATCTACTGTTTTTCAG 59.056 45.833 0.00 0.00 42.04 3.02
358 359 3.115554 CTGTTTTTCAGTTTTCAGGCGG 58.884 45.455 0.00 0.00 39.17 6.13
359 360 1.858458 GTTTTTCAGTTTTCAGGCGGC 59.142 47.619 0.00 0.00 0.00 6.53
360 361 1.398692 TTTTCAGTTTTCAGGCGGCT 58.601 45.000 5.25 5.25 0.00 5.52
361 362 0.667993 TTTCAGTTTTCAGGCGGCTG 59.332 50.000 31.58 31.58 0.00 4.85
362 363 1.172180 TTCAGTTTTCAGGCGGCTGG 61.172 55.000 35.20 19.87 0.00 4.85
363 364 2.985847 AGTTTTCAGGCGGCTGGC 60.986 61.111 35.20 22.70 42.51 4.85
380 381 4.593864 CGCCTAGCCGCTCCCTTC 62.594 72.222 0.00 0.00 0.00 3.46
381 382 4.243008 GCCTAGCCGCTCCCTTCC 62.243 72.222 0.00 0.00 0.00 3.46
382 383 2.764128 CCTAGCCGCTCCCTTCCA 60.764 66.667 0.00 0.00 0.00 3.53
383 384 2.801631 CCTAGCCGCTCCCTTCCAG 61.802 68.421 0.00 0.00 0.00 3.86
384 385 1.758514 CTAGCCGCTCCCTTCCAGA 60.759 63.158 0.00 0.00 0.00 3.86
385 386 1.305802 TAGCCGCTCCCTTCCAGAA 60.306 57.895 0.00 0.00 0.00 3.02
386 387 0.907704 TAGCCGCTCCCTTCCAGAAA 60.908 55.000 0.00 0.00 0.00 2.52
387 388 1.303317 GCCGCTCCCTTCCAGAAAA 60.303 57.895 0.00 0.00 0.00 2.29
388 389 1.587043 GCCGCTCCCTTCCAGAAAAC 61.587 60.000 0.00 0.00 0.00 2.43
389 390 0.250727 CCGCTCCCTTCCAGAAAACA 60.251 55.000 0.00 0.00 0.00 2.83
390 391 1.160137 CGCTCCCTTCCAGAAAACAG 58.840 55.000 0.00 0.00 0.00 3.16
391 392 1.270839 CGCTCCCTTCCAGAAAACAGA 60.271 52.381 0.00 0.00 0.00 3.41
392 393 2.431454 GCTCCCTTCCAGAAAACAGAG 58.569 52.381 0.00 0.00 0.00 3.35
393 394 2.039084 GCTCCCTTCCAGAAAACAGAGA 59.961 50.000 0.00 0.00 0.00 3.10
394 395 3.669536 CTCCCTTCCAGAAAACAGAGAC 58.330 50.000 0.00 0.00 0.00 3.36
395 396 3.045634 TCCCTTCCAGAAAACAGAGACA 58.954 45.455 0.00 0.00 0.00 3.41
396 397 3.142174 CCCTTCCAGAAAACAGAGACAC 58.858 50.000 0.00 0.00 0.00 3.67
397 398 2.802816 CCTTCCAGAAAACAGAGACACG 59.197 50.000 0.00 0.00 0.00 4.49
398 399 2.526304 TCCAGAAAACAGAGACACGG 57.474 50.000 0.00 0.00 0.00 4.94
399 400 1.070134 TCCAGAAAACAGAGACACGGG 59.930 52.381 0.00 0.00 0.00 5.28
400 401 1.070134 CCAGAAAACAGAGACACGGGA 59.930 52.381 0.00 0.00 0.00 5.14
401 402 2.484770 CCAGAAAACAGAGACACGGGAA 60.485 50.000 0.00 0.00 0.00 3.97
402 403 2.802816 CAGAAAACAGAGACACGGGAAG 59.197 50.000 0.00 0.00 0.00 3.46
403 404 2.143925 GAAAACAGAGACACGGGAAGG 58.856 52.381 0.00 0.00 0.00 3.46
404 405 1.420430 AAACAGAGACACGGGAAGGA 58.580 50.000 0.00 0.00 0.00 3.36
405 406 1.420430 AACAGAGACACGGGAAGGAA 58.580 50.000 0.00 0.00 0.00 3.36
406 407 1.420430 ACAGAGACACGGGAAGGAAA 58.580 50.000 0.00 0.00 0.00 3.13
407 408 1.978580 ACAGAGACACGGGAAGGAAAT 59.021 47.619 0.00 0.00 0.00 2.17
408 409 2.028020 ACAGAGACACGGGAAGGAAATC 60.028 50.000 0.00 0.00 0.00 2.17
409 410 1.555533 AGAGACACGGGAAGGAAATCC 59.444 52.381 0.00 0.00 38.86 3.01
410 411 1.278127 GAGACACGGGAAGGAAATCCA 59.722 52.381 0.00 0.00 41.55 3.41
411 412 1.916181 AGACACGGGAAGGAAATCCAT 59.084 47.619 0.00 0.00 41.55 3.41
412 413 2.017049 GACACGGGAAGGAAATCCATG 58.983 52.381 0.00 0.00 41.55 3.66
413 414 1.340991 ACACGGGAAGGAAATCCATGG 60.341 52.381 4.97 4.97 41.55 3.66
414 415 1.064758 CACGGGAAGGAAATCCATGGA 60.065 52.381 18.88 18.88 41.55 3.41
415 416 1.638589 ACGGGAAGGAAATCCATGGAA 59.361 47.619 20.67 1.96 41.55 3.53
416 417 2.244769 ACGGGAAGGAAATCCATGGAAT 59.755 45.455 20.67 7.74 41.55 3.01
417 418 2.887152 CGGGAAGGAAATCCATGGAATC 59.113 50.000 20.67 19.19 41.55 2.52
418 419 3.688126 CGGGAAGGAAATCCATGGAATCA 60.688 47.826 20.67 0.00 41.55 2.57
419 420 4.289245 GGGAAGGAAATCCATGGAATCAA 58.711 43.478 20.67 0.00 41.55 2.57
420 421 4.716287 GGGAAGGAAATCCATGGAATCAAA 59.284 41.667 20.67 0.00 41.55 2.69
421 422 5.395657 GGGAAGGAAATCCATGGAATCAAAC 60.396 44.000 20.67 13.24 41.55 2.93
422 423 4.989279 AGGAAATCCATGGAATCAAACG 57.011 40.909 20.67 0.00 38.89 3.60
423 424 4.344104 AGGAAATCCATGGAATCAAACGT 58.656 39.130 20.67 6.35 38.89 3.99
424 425 4.772100 AGGAAATCCATGGAATCAAACGTT 59.228 37.500 20.67 2.44 38.89 3.99
425 426 5.102313 GGAAATCCATGGAATCAAACGTTC 58.898 41.667 20.67 11.31 35.64 3.95
426 427 5.336372 GGAAATCCATGGAATCAAACGTTCA 60.336 40.000 20.67 0.00 35.64 3.18
427 428 5.720371 AATCCATGGAATCAAACGTTCAA 57.280 34.783 20.67 0.00 0.00 2.69
428 429 4.497473 TCCATGGAATCAAACGTTCAAC 57.503 40.909 13.46 0.00 0.00 3.18
438 439 3.545911 CGTTCAACGGGGTCTTCG 58.454 61.111 0.61 0.00 38.08 3.79
439 440 1.300388 CGTTCAACGGGGTCTTCGT 60.300 57.895 0.61 0.00 43.14 3.85
440 441 1.554042 CGTTCAACGGGGTCTTCGTG 61.554 60.000 0.61 0.00 40.96 4.35
441 442 1.595929 TTCAACGGGGTCTTCGTGC 60.596 57.895 0.00 0.00 40.96 5.34
442 443 2.999739 TTCAACGGGGTCTTCGTGCC 63.000 60.000 0.00 0.00 40.96 5.01
443 444 3.552384 AACGGGGTCTTCGTGCCA 61.552 61.111 0.00 0.00 40.96 4.92
444 445 2.890766 AACGGGGTCTTCGTGCCAT 61.891 57.895 0.00 0.00 40.96 4.40
445 446 2.819595 CGGGGTCTTCGTGCCATG 60.820 66.667 0.00 0.00 0.00 3.66
446 447 2.668632 GGGGTCTTCGTGCCATGA 59.331 61.111 0.00 0.00 0.00 3.07
447 448 1.002624 GGGGTCTTCGTGCCATGAA 60.003 57.895 0.00 0.00 0.00 2.57
448 449 1.026718 GGGGTCTTCGTGCCATGAAG 61.027 60.000 18.63 18.63 41.43 3.02
449 450 1.026718 GGGTCTTCGTGCCATGAAGG 61.027 60.000 22.96 7.96 40.67 3.46
450 451 0.321653 GGTCTTCGTGCCATGAAGGT 60.322 55.000 22.96 0.00 40.67 3.50
451 452 0.798776 GTCTTCGTGCCATGAAGGTG 59.201 55.000 22.96 2.86 40.67 4.00
452 453 0.396435 TCTTCGTGCCATGAAGGTGT 59.604 50.000 22.96 0.00 40.67 4.16
453 454 0.518636 CTTCGTGCCATGAAGGTGTG 59.481 55.000 17.24 0.00 37.53 3.82
454 455 1.514678 TTCGTGCCATGAAGGTGTGC 61.515 55.000 0.00 0.00 40.61 4.57
455 456 2.964978 GTGCCATGAAGGTGTGCC 59.035 61.111 0.00 0.00 40.61 5.01
465 466 1.005394 AGGTGTGCCTTACCGTTCG 60.005 57.895 0.00 0.00 44.18 3.95
466 467 1.301165 GGTGTGCCTTACCGTTCGT 60.301 57.895 0.00 0.00 0.00 3.85
467 468 0.881600 GGTGTGCCTTACCGTTCGTT 60.882 55.000 0.00 0.00 0.00 3.85
468 469 1.605202 GGTGTGCCTTACCGTTCGTTA 60.605 52.381 0.00 0.00 0.00 3.18
469 470 2.134346 GTGTGCCTTACCGTTCGTTAA 58.866 47.619 0.00 0.00 0.00 2.01
470 471 2.096762 GTGTGCCTTACCGTTCGTTAAC 60.097 50.000 0.00 0.00 0.00 2.01
471 472 2.224018 TGTGCCTTACCGTTCGTTAACT 60.224 45.455 3.71 0.00 33.15 2.24
472 473 3.005261 TGTGCCTTACCGTTCGTTAACTA 59.995 43.478 3.71 0.00 33.15 2.24
473 474 3.364920 GTGCCTTACCGTTCGTTAACTAC 59.635 47.826 3.71 1.15 33.15 2.73
474 475 3.255642 TGCCTTACCGTTCGTTAACTACT 59.744 43.478 3.71 0.00 33.15 2.57
475 476 4.457603 TGCCTTACCGTTCGTTAACTACTA 59.542 41.667 3.71 0.00 33.15 1.82
476 477 5.125417 TGCCTTACCGTTCGTTAACTACTAT 59.875 40.000 3.71 0.00 33.15 2.12
477 478 6.317642 TGCCTTACCGTTCGTTAACTACTATA 59.682 38.462 3.71 0.00 33.15 1.31
478 479 6.633234 GCCTTACCGTTCGTTAACTACTATAC 59.367 42.308 3.71 0.00 33.15 1.47
479 480 7.467403 GCCTTACCGTTCGTTAACTACTATACT 60.467 40.741 3.71 0.00 33.15 2.12
480 481 9.042008 CCTTACCGTTCGTTAACTACTATACTA 57.958 37.037 3.71 0.00 33.15 1.82
481 482 9.851043 CTTACCGTTCGTTAACTACTATACTAC 57.149 37.037 3.71 0.00 33.15 2.73
482 483 9.595823 TTACCGTTCGTTAACTACTATACTACT 57.404 33.333 3.71 0.00 33.15 2.57
483 484 7.910304 ACCGTTCGTTAACTACTATACTACTG 58.090 38.462 3.71 0.00 33.15 2.74
484 485 7.549488 ACCGTTCGTTAACTACTATACTACTGT 59.451 37.037 3.71 0.00 33.15 3.55
485 486 9.031360 CCGTTCGTTAACTACTATACTACTGTA 57.969 37.037 3.71 0.00 33.15 2.74
498 499 9.765795 ACTATACTACTGTAGGAATGAAAATGC 57.234 33.333 18.38 0.00 31.51 3.56
499 500 9.988815 CTATACTACTGTAGGAATGAAAATGCT 57.011 33.333 18.38 0.00 31.51 3.79
503 504 8.947115 ACTACTGTAGGAATGAAAATGCTAAAC 58.053 33.333 18.38 0.00 0.00 2.01
504 505 6.842163 ACTGTAGGAATGAAAATGCTAAACG 58.158 36.000 0.00 0.00 0.00 3.60
505 506 6.653320 ACTGTAGGAATGAAAATGCTAAACGA 59.347 34.615 0.00 0.00 0.00 3.85
506 507 7.072177 TGTAGGAATGAAAATGCTAAACGAG 57.928 36.000 0.00 0.00 0.00 4.18
522 523 3.099267 ACGAGTATATGCAGTCCAAGC 57.901 47.619 0.00 0.00 0.00 4.01
545 549 3.851458 AAAAAGAACACTACTCGGGGT 57.149 42.857 0.00 0.00 0.00 4.95
575 587 1.237285 GCTGTCATTTCACACCGGCT 61.237 55.000 0.00 0.00 0.00 5.52
654 672 2.346739 GAGCAGAGCACAGGCAGT 59.653 61.111 1.22 0.00 44.61 4.40
848 881 1.004918 CTCCGCACGAACCTTCCTT 60.005 57.895 0.00 0.00 0.00 3.36
857 890 0.771755 GAACCTTCCTTCCCACCACT 59.228 55.000 0.00 0.00 0.00 4.00
874 916 0.115349 ACTACCACCACCTCTCTGCT 59.885 55.000 0.00 0.00 0.00 4.24
951 993 1.301293 CAGCTTCTTCCACCCCCTC 59.699 63.158 0.00 0.00 0.00 4.30
956 998 2.692741 CTTCCACCCCCTCCCTCC 60.693 72.222 0.00 0.00 0.00 4.30
1570 1634 2.154798 CTCCAAGAACGCGTGGGAGA 62.155 60.000 30.22 17.24 42.98 3.71
1755 1819 2.361357 AGGCAGTACTCGTCGGCT 60.361 61.111 0.00 0.00 0.00 5.52
1958 2022 2.126189 GTACCTGGACACGGCGAC 60.126 66.667 16.62 4.28 0.00 5.19
2011 2075 1.884464 CGGCATGTAGCTGCGATGT 60.884 57.895 0.00 0.00 43.88 3.06
2319 2702 9.265901 TGGTAGTAGTAGTAGTACGATGATTTC 57.734 37.037 13.92 2.08 36.32 2.17
2356 2742 5.832060 GGGAGATGTTTTCATGGAGATCAAT 59.168 40.000 0.00 0.00 41.05 2.57
2357 2743 6.016443 GGGAGATGTTTTCATGGAGATCAATC 60.016 42.308 0.00 0.00 41.05 2.67
2358 2744 6.544931 GGAGATGTTTTCATGGAGATCAATCA 59.455 38.462 0.00 0.00 41.05 2.57
2359 2745 7.255173 GGAGATGTTTTCATGGAGATCAATCAG 60.255 40.741 0.00 0.00 41.05 2.90
2360 2746 5.571784 TGTTTTCATGGAGATCAATCAGC 57.428 39.130 0.00 0.00 0.00 4.26
2404 2795 2.831685 TGTGTCGCCAATTCTGTAGT 57.168 45.000 0.00 0.00 0.00 2.73
2405 2796 2.683968 TGTGTCGCCAATTCTGTAGTC 58.316 47.619 0.00 0.00 0.00 2.59
2443 2834 0.035598 TTTTCTCGATTCCCGTGCCA 59.964 50.000 0.00 0.00 39.75 4.92
2444 2835 0.251916 TTTCTCGATTCCCGTGCCAT 59.748 50.000 0.00 0.00 39.75 4.40
2446 2837 1.043116 TCTCGATTCCCGTGCCATCT 61.043 55.000 0.00 0.00 39.75 2.90
2484 2875 1.446966 GGCGACTGACTGCTCTTCC 60.447 63.158 0.00 0.00 0.00 3.46
2511 2902 4.497473 TTCCTTAACAAGCAATTGACCG 57.503 40.909 10.34 0.00 0.00 4.79
2580 2995 7.996644 ACCAAGGAGTTCAAAAGAATTACTGTA 59.003 33.333 0.00 0.00 0.00 2.74
2581 2996 8.290325 CCAAGGAGTTCAAAAGAATTACTGTAC 58.710 37.037 0.00 0.00 0.00 2.90
2583 2998 7.514721 AGGAGTTCAAAAGAATTACTGTACCA 58.485 34.615 0.00 0.00 0.00 3.25
2584 2999 8.164070 AGGAGTTCAAAAGAATTACTGTACCAT 58.836 33.333 0.00 0.00 0.00 3.55
2585 3000 8.451748 GGAGTTCAAAAGAATTACTGTACCATC 58.548 37.037 0.00 0.00 0.00 3.51
2586 3001 8.336801 AGTTCAAAAGAATTACTGTACCATCC 57.663 34.615 0.00 0.00 0.00 3.51
2596 3011 1.945394 CTGTACCATCCTGCTGAATGC 59.055 52.381 0.00 0.00 43.25 3.56
2660 3144 7.448748 AAACTAACAACACATGAAGATACCC 57.551 36.000 0.00 0.00 0.00 3.69
2661 3145 6.374417 ACTAACAACACATGAAGATACCCT 57.626 37.500 0.00 0.00 0.00 4.34
2662 3146 7.490657 ACTAACAACACATGAAGATACCCTA 57.509 36.000 0.00 0.00 0.00 3.53
2663 3147 7.913789 ACTAACAACACATGAAGATACCCTAA 58.086 34.615 0.00 0.00 0.00 2.69
2664 3148 8.380099 ACTAACAACACATGAAGATACCCTAAA 58.620 33.333 0.00 0.00 0.00 1.85
2665 3149 9.226606 CTAACAACACATGAAGATACCCTAAAA 57.773 33.333 0.00 0.00 0.00 1.52
2666 3150 8.472007 AACAACACATGAAGATACCCTAAAAA 57.528 30.769 0.00 0.00 0.00 1.94
2667 3151 7.882179 ACAACACATGAAGATACCCTAAAAAC 58.118 34.615 0.00 0.00 0.00 2.43
2668 3152 7.504238 ACAACACATGAAGATACCCTAAAAACA 59.496 33.333 0.00 0.00 0.00 2.83
2669 3153 7.448748 ACACATGAAGATACCCTAAAAACAC 57.551 36.000 0.00 0.00 0.00 3.32
2670 3154 7.001674 ACACATGAAGATACCCTAAAAACACA 58.998 34.615 0.00 0.00 0.00 3.72
2671 3155 7.040686 ACACATGAAGATACCCTAAAAACACAC 60.041 37.037 0.00 0.00 0.00 3.82
2672 3156 7.001674 ACATGAAGATACCCTAAAAACACACA 58.998 34.615 0.00 0.00 0.00 3.72
2673 3157 7.669722 ACATGAAGATACCCTAAAAACACACAT 59.330 33.333 0.00 0.00 0.00 3.21
2674 3158 7.447374 TGAAGATACCCTAAAAACACACATG 57.553 36.000 0.00 0.00 0.00 3.21
2675 3159 7.227873 TGAAGATACCCTAAAAACACACATGA 58.772 34.615 0.00 0.00 0.00 3.07
2676 3160 7.721842 TGAAGATACCCTAAAAACACACATGAA 59.278 33.333 0.00 0.00 0.00 2.57
2677 3161 7.687941 AGATACCCTAAAAACACACATGAAG 57.312 36.000 0.00 0.00 0.00 3.02
2678 3162 7.458397 AGATACCCTAAAAACACACATGAAGA 58.542 34.615 0.00 0.00 0.00 2.87
2679 3163 8.109634 AGATACCCTAAAAACACACATGAAGAT 58.890 33.333 0.00 0.00 0.00 2.40
2684 3168 7.086376 CCTAAAAACACACATGAAGATGAAGG 58.914 38.462 0.00 0.00 33.36 3.46
2715 3199 3.144506 CGAGATGCAATAAGCCCAGAAT 58.855 45.455 0.00 0.00 44.83 2.40
2735 3250 7.066284 CCAGAATGATCGTCCAAGAAACTAAAT 59.934 37.037 0.00 0.00 39.69 1.40
2794 3313 3.884091 GAGGAAACGGAGAGAGCACTATA 59.116 47.826 0.00 0.00 0.00 1.31
2795 3314 3.886505 AGGAAACGGAGAGAGCACTATAG 59.113 47.826 0.00 0.00 0.00 1.31
2796 3315 3.884091 GGAAACGGAGAGAGCACTATAGA 59.116 47.826 6.78 0.00 0.00 1.98
2797 3316 4.338682 GGAAACGGAGAGAGCACTATAGAA 59.661 45.833 6.78 0.00 0.00 2.10
2798 3317 5.506649 GGAAACGGAGAGAGCACTATAGAAG 60.507 48.000 6.78 0.00 0.00 2.85
2799 3318 4.159244 ACGGAGAGAGCACTATAGAAGT 57.841 45.455 6.78 0.00 39.81 3.01
2800 3319 5.293319 ACGGAGAGAGCACTATAGAAGTA 57.707 43.478 6.78 0.00 35.76 2.24
2965 3496 1.924320 GACACGGTGTCTCTCCCTCG 61.924 65.000 29.09 0.00 43.73 4.63
2966 3497 3.063084 ACGGTGTCTCTCCCTCGC 61.063 66.667 0.00 0.00 0.00 5.03
3049 3586 4.467084 GCAGCCGAATCCCCACGA 62.467 66.667 0.00 0.00 0.00 4.35
3070 3607 2.370647 GATACCGTCTGCCTCCTGCC 62.371 65.000 0.00 0.00 40.16 4.85
3073 3610 4.020617 CGTCTGCCTCCTGCCCAA 62.021 66.667 0.00 0.00 40.16 4.12
3074 3611 2.360475 GTCTGCCTCCTGCCCAAC 60.360 66.667 0.00 0.00 40.16 3.77
3075 3612 2.853542 TCTGCCTCCTGCCCAACA 60.854 61.111 0.00 0.00 40.16 3.33
3077 3614 4.284550 TGCCTCCTGCCCAACACC 62.285 66.667 0.00 0.00 40.16 4.16
3112 3653 3.319405 TGCATTTAGTTGGGCGAAAAAGA 59.681 39.130 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.096443 ACCTAGAGAGCTTTTTCCATGAG 57.904 43.478 0.00 0.00 0.00 2.90
1 2 4.780021 AGACCTAGAGAGCTTTTTCCATGA 59.220 41.667 0.00 0.00 0.00 3.07
2 3 5.096443 AGACCTAGAGAGCTTTTTCCATG 57.904 43.478 0.00 0.00 0.00 3.66
3 4 6.843861 AGATAGACCTAGAGAGCTTTTTCCAT 59.156 38.462 0.00 0.00 0.00 3.41
4 5 6.198639 AGATAGACCTAGAGAGCTTTTTCCA 58.801 40.000 0.00 0.00 0.00 3.53
5 6 6.724893 AGATAGACCTAGAGAGCTTTTTCC 57.275 41.667 0.00 0.00 0.00 3.13
6 7 8.357402 CCTAAGATAGACCTAGAGAGCTTTTTC 58.643 40.741 0.00 0.00 0.00 2.29
8 9 6.780522 CCCTAAGATAGACCTAGAGAGCTTTT 59.219 42.308 0.00 0.00 0.00 2.27
9 10 6.126008 ACCCTAAGATAGACCTAGAGAGCTTT 60.126 42.308 0.00 0.00 0.00 3.51
10 11 5.374453 ACCCTAAGATAGACCTAGAGAGCTT 59.626 44.000 0.00 0.00 0.00 3.74
11 12 4.917656 ACCCTAAGATAGACCTAGAGAGCT 59.082 45.833 0.00 0.00 0.00 4.09
12 13 5.251182 ACCCTAAGATAGACCTAGAGAGC 57.749 47.826 0.00 0.00 0.00 4.09
13 14 6.013206 TGCTACCCTAAGATAGACCTAGAGAG 60.013 46.154 0.00 0.00 0.00 3.20
14 15 5.850583 TGCTACCCTAAGATAGACCTAGAGA 59.149 44.000 0.00 0.00 0.00 3.10
15 16 6.129414 TGCTACCCTAAGATAGACCTAGAG 57.871 45.833 0.00 0.00 0.00 2.43
16 17 5.014333 CCTGCTACCCTAAGATAGACCTAGA 59.986 48.000 0.00 0.00 0.00 2.43
17 18 5.222171 ACCTGCTACCCTAAGATAGACCTAG 60.222 48.000 0.00 0.00 0.00 3.02
18 19 4.668812 ACCTGCTACCCTAAGATAGACCTA 59.331 45.833 0.00 0.00 0.00 3.08
19 20 3.467863 ACCTGCTACCCTAAGATAGACCT 59.532 47.826 0.00 0.00 0.00 3.85
20 21 3.574826 CACCTGCTACCCTAAGATAGACC 59.425 52.174 0.00 0.00 0.00 3.85
21 22 4.278919 GTCACCTGCTACCCTAAGATAGAC 59.721 50.000 0.00 0.00 0.00 2.59
22 23 4.471548 GTCACCTGCTACCCTAAGATAGA 58.528 47.826 0.00 0.00 0.00 1.98
23 24 3.574826 GGTCACCTGCTACCCTAAGATAG 59.425 52.174 0.00 0.00 0.00 2.08
24 25 3.573695 GGTCACCTGCTACCCTAAGATA 58.426 50.000 0.00 0.00 0.00 1.98
25 26 2.399580 GGTCACCTGCTACCCTAAGAT 58.600 52.381 0.00 0.00 0.00 2.40
26 27 1.861982 GGTCACCTGCTACCCTAAGA 58.138 55.000 0.00 0.00 0.00 2.10
32 33 1.209621 TAATGGGGTCACCTGCTACC 58.790 55.000 0.00 0.00 41.11 3.18
33 34 2.706190 AGATAATGGGGTCACCTGCTAC 59.294 50.000 0.00 0.00 41.11 3.58
34 35 3.060479 AGATAATGGGGTCACCTGCTA 57.940 47.619 0.00 0.00 41.11 3.49
35 36 1.898863 AGATAATGGGGTCACCTGCT 58.101 50.000 0.00 0.00 41.11 4.24
36 37 3.584848 AGATAGATAATGGGGTCACCTGC 59.415 47.826 0.00 0.00 41.11 4.85
37 38 5.832539 AAGATAGATAATGGGGTCACCTG 57.167 43.478 0.00 0.00 41.11 4.00
38 39 5.672194 ACAAAGATAGATAATGGGGTCACCT 59.328 40.000 0.00 0.00 41.11 4.00
39 40 5.765182 CACAAAGATAGATAATGGGGTCACC 59.235 44.000 0.00 0.00 40.81 4.02
40 41 5.765182 CCACAAAGATAGATAATGGGGTCAC 59.235 44.000 0.00 0.00 29.78 3.67
41 42 5.431731 ACCACAAAGATAGATAATGGGGTCA 59.568 40.000 0.00 0.00 44.25 4.02
42 43 5.765182 CACCACAAAGATAGATAATGGGGTC 59.235 44.000 0.00 0.00 44.25 4.46
43 44 5.994416 ACCACAAAGATAGATAATGGGGT 57.006 39.130 0.00 0.00 42.82 4.95
44 45 5.532406 CACACCACAAAGATAGATAATGGGG 59.468 44.000 0.00 0.00 40.47 4.96
45 46 5.532406 CCACACCACAAAGATAGATAATGGG 59.468 44.000 0.00 0.00 0.00 4.00
46 47 5.532406 CCCACACCACAAAGATAGATAATGG 59.468 44.000 0.00 0.00 0.00 3.16
47 48 5.532406 CCCCACACCACAAAGATAGATAATG 59.468 44.000 0.00 0.00 0.00 1.90
48 49 5.399038 CCCCCACACCACAAAGATAGATAAT 60.399 44.000 0.00 0.00 0.00 1.28
49 50 4.080015 CCCCCACACCACAAAGATAGATAA 60.080 45.833 0.00 0.00 0.00 1.75
50 51 3.458118 CCCCCACACCACAAAGATAGATA 59.542 47.826 0.00 0.00 0.00 1.98
51 52 2.242196 CCCCCACACCACAAAGATAGAT 59.758 50.000 0.00 0.00 0.00 1.98
52 53 1.633432 CCCCCACACCACAAAGATAGA 59.367 52.381 0.00 0.00 0.00 1.98
53 54 1.354368 ACCCCCACACCACAAAGATAG 59.646 52.381 0.00 0.00 0.00 2.08
54 55 1.074727 CACCCCCACACCACAAAGATA 59.925 52.381 0.00 0.00 0.00 1.98
55 56 0.178964 CACCCCCACACCACAAAGAT 60.179 55.000 0.00 0.00 0.00 2.40
56 57 1.228793 CACCCCCACACCACAAAGA 59.771 57.895 0.00 0.00 0.00 2.52
57 58 1.832167 CCACCCCCACACCACAAAG 60.832 63.158 0.00 0.00 0.00 2.77
58 59 2.280416 CCACCCCCACACCACAAA 59.720 61.111 0.00 0.00 0.00 2.83
59 60 2.696504 TCCACCCCCACACCACAA 60.697 61.111 0.00 0.00 0.00 3.33
60 61 3.494254 GTCCACCCCCACACCACA 61.494 66.667 0.00 0.00 0.00 4.17
61 62 4.636435 CGTCCACCCCCACACCAC 62.636 72.222 0.00 0.00 0.00 4.16
74 75 4.265056 AACCTGCACCACCCGTCC 62.265 66.667 0.00 0.00 0.00 4.79
75 76 2.668550 GAACCTGCACCACCCGTC 60.669 66.667 0.00 0.00 0.00 4.79
76 77 4.619227 CGAACCTGCACCACCCGT 62.619 66.667 0.00 0.00 0.00 5.28
84 85 2.186602 TATTTCCCGGCGAACCTGCA 62.187 55.000 9.30 0.00 36.28 4.41
85 86 1.027792 TTATTTCCCGGCGAACCTGC 61.028 55.000 9.30 0.00 0.00 4.85
86 87 1.131693 GTTTATTTCCCGGCGAACCTG 59.868 52.381 9.30 0.00 0.00 4.00
87 88 1.003928 AGTTTATTTCCCGGCGAACCT 59.996 47.619 9.30 0.00 0.00 3.50
88 89 1.456296 AGTTTATTTCCCGGCGAACC 58.544 50.000 9.30 0.00 0.00 3.62
89 90 2.227149 ACAAGTTTATTTCCCGGCGAAC 59.773 45.455 9.30 2.36 0.00 3.95
90 91 2.485038 GACAAGTTTATTTCCCGGCGAA 59.515 45.455 9.30 0.00 0.00 4.70
91 92 2.078392 GACAAGTTTATTTCCCGGCGA 58.922 47.619 9.30 0.00 0.00 5.54
92 93 1.807742 TGACAAGTTTATTTCCCGGCG 59.192 47.619 0.00 0.00 0.00 6.46
93 94 4.173256 CAATGACAAGTTTATTTCCCGGC 58.827 43.478 0.00 0.00 0.00 6.13
94 95 4.173256 GCAATGACAAGTTTATTTCCCGG 58.827 43.478 0.00 0.00 0.00 5.73
95 96 4.173256 GGCAATGACAAGTTTATTTCCCG 58.827 43.478 0.00 0.00 0.00 5.14
96 97 4.082463 TCGGCAATGACAAGTTTATTTCCC 60.082 41.667 0.00 0.00 0.00 3.97
97 98 5.054390 TCGGCAATGACAAGTTTATTTCC 57.946 39.130 0.00 0.00 0.00 3.13
98 99 5.095490 CCTCGGCAATGACAAGTTTATTTC 58.905 41.667 0.00 0.00 0.00 2.17
99 100 4.522789 ACCTCGGCAATGACAAGTTTATTT 59.477 37.500 0.00 0.00 0.00 1.40
100 101 4.079253 ACCTCGGCAATGACAAGTTTATT 58.921 39.130 0.00 0.00 0.00 1.40
101 102 3.686016 ACCTCGGCAATGACAAGTTTAT 58.314 40.909 0.00 0.00 0.00 1.40
102 103 3.134574 ACCTCGGCAATGACAAGTTTA 57.865 42.857 0.00 0.00 0.00 2.01
103 104 1.981256 ACCTCGGCAATGACAAGTTT 58.019 45.000 0.00 0.00 0.00 2.66
104 105 1.981256 AACCTCGGCAATGACAAGTT 58.019 45.000 0.00 0.00 0.00 2.66
105 106 2.615493 CCTAACCTCGGCAATGACAAGT 60.615 50.000 0.00 0.00 0.00 3.16
106 107 2.009774 CCTAACCTCGGCAATGACAAG 58.990 52.381 0.00 0.00 0.00 3.16
107 108 1.626321 TCCTAACCTCGGCAATGACAA 59.374 47.619 0.00 0.00 0.00 3.18
108 109 1.271856 TCCTAACCTCGGCAATGACA 58.728 50.000 0.00 0.00 0.00 3.58
109 110 2.093658 TCTTCCTAACCTCGGCAATGAC 60.094 50.000 0.00 0.00 0.00 3.06
110 111 2.184533 TCTTCCTAACCTCGGCAATGA 58.815 47.619 0.00 0.00 0.00 2.57
111 112 2.691409 TCTTCCTAACCTCGGCAATG 57.309 50.000 0.00 0.00 0.00 2.82
112 113 2.158755 CCATCTTCCTAACCTCGGCAAT 60.159 50.000 0.00 0.00 0.00 3.56
113 114 1.209504 CCATCTTCCTAACCTCGGCAA 59.790 52.381 0.00 0.00 0.00 4.52
114 115 0.830648 CCATCTTCCTAACCTCGGCA 59.169 55.000 0.00 0.00 0.00 5.69
115 116 0.831307 ACCATCTTCCTAACCTCGGC 59.169 55.000 0.00 0.00 0.00 5.54
116 117 2.420129 CCAACCATCTTCCTAACCTCGG 60.420 54.545 0.00 0.00 0.00 4.63
117 118 2.906354 CCAACCATCTTCCTAACCTCG 58.094 52.381 0.00 0.00 0.00 4.63
118 119 2.644676 GCCAACCATCTTCCTAACCTC 58.355 52.381 0.00 0.00 0.00 3.85
119 120 1.065418 CGCCAACCATCTTCCTAACCT 60.065 52.381 0.00 0.00 0.00 3.50
120 121 1.379527 CGCCAACCATCTTCCTAACC 58.620 55.000 0.00 0.00 0.00 2.85
121 122 1.379527 CCGCCAACCATCTTCCTAAC 58.620 55.000 0.00 0.00 0.00 2.34
122 123 0.393808 GCCGCCAACCATCTTCCTAA 60.394 55.000 0.00 0.00 0.00 2.69
123 124 1.223487 GCCGCCAACCATCTTCCTA 59.777 57.895 0.00 0.00 0.00 2.94
124 125 2.044946 GCCGCCAACCATCTTCCT 60.045 61.111 0.00 0.00 0.00 3.36
125 126 3.508840 CGCCGCCAACCATCTTCC 61.509 66.667 0.00 0.00 0.00 3.46
126 127 3.508840 CCGCCGCCAACCATCTTC 61.509 66.667 0.00 0.00 0.00 2.87
142 143 3.807538 CACTGTCATGCTGCGGCC 61.808 66.667 16.57 0.00 37.74 6.13
143 144 3.807538 CCACTGTCATGCTGCGGC 61.808 66.667 11.65 11.65 39.26 6.53
144 145 3.129502 CCCACTGTCATGCTGCGG 61.130 66.667 0.00 0.00 0.00 5.69
145 146 3.807538 GCCCACTGTCATGCTGCG 61.808 66.667 0.00 0.00 0.00 5.18
146 147 3.807538 CGCCCACTGTCATGCTGC 61.808 66.667 0.00 0.00 0.00 5.25
147 148 2.359107 ACGCCCACTGTCATGCTG 60.359 61.111 0.00 0.00 0.00 4.41
148 149 2.046892 GACGCCCACTGTCATGCT 60.047 61.111 0.00 0.00 36.37 3.79
149 150 3.490759 CGACGCCCACTGTCATGC 61.491 66.667 0.00 0.00 36.11 4.06
150 151 2.578163 ATCCGACGCCCACTGTCATG 62.578 60.000 0.00 0.00 36.11 3.07
151 152 2.359169 ATCCGACGCCCACTGTCAT 61.359 57.895 0.00 0.00 36.11 3.06
152 153 2.994995 ATCCGACGCCCACTGTCA 60.995 61.111 0.00 0.00 36.11 3.58
153 154 2.509336 CATCCGACGCCCACTGTC 60.509 66.667 0.00 0.00 0.00 3.51
154 155 2.994995 TCATCCGACGCCCACTGT 60.995 61.111 0.00 0.00 0.00 3.55
155 156 2.202797 CTCATCCGACGCCCACTG 60.203 66.667 0.00 0.00 0.00 3.66
156 157 3.461773 CCTCATCCGACGCCCACT 61.462 66.667 0.00 0.00 0.00 4.00
157 158 4.530857 CCCTCATCCGACGCCCAC 62.531 72.222 0.00 0.00 0.00 4.61
160 161 3.917760 CTCCCCTCATCCGACGCC 61.918 72.222 0.00 0.00 0.00 5.68
161 162 3.917760 CCTCCCCTCATCCGACGC 61.918 72.222 0.00 0.00 0.00 5.19
162 163 3.917760 GCCTCCCCTCATCCGACG 61.918 72.222 0.00 0.00 0.00 5.12
163 164 2.444895 AGCCTCCCCTCATCCGAC 60.445 66.667 0.00 0.00 0.00 4.79
164 165 2.444706 CAGCCTCCCCTCATCCGA 60.445 66.667 0.00 0.00 0.00 4.55
165 166 4.247380 GCAGCCTCCCCTCATCCG 62.247 72.222 0.00 0.00 0.00 4.18
166 167 3.883549 GGCAGCCTCCCCTCATCC 61.884 72.222 3.29 0.00 0.00 3.51
167 168 4.247380 CGGCAGCCTCCCCTCATC 62.247 72.222 10.54 0.00 0.00 2.92
206 207 2.775032 TAACCGTCTGCCTCCGTTGC 62.775 60.000 0.00 0.00 0.00 4.17
207 208 0.736325 CTAACCGTCTGCCTCCGTTG 60.736 60.000 0.00 0.00 0.00 4.10
208 209 0.896940 TCTAACCGTCTGCCTCCGTT 60.897 55.000 0.00 0.00 0.00 4.44
209 210 1.303888 TCTAACCGTCTGCCTCCGT 60.304 57.895 0.00 0.00 0.00 4.69
210 211 1.139095 GTCTAACCGTCTGCCTCCG 59.861 63.158 0.00 0.00 0.00 4.63
211 212 0.173708 CTGTCTAACCGTCTGCCTCC 59.826 60.000 0.00 0.00 0.00 4.30
212 213 0.173708 CCTGTCTAACCGTCTGCCTC 59.826 60.000 0.00 0.00 0.00 4.70
213 214 1.258445 CCCTGTCTAACCGTCTGCCT 61.258 60.000 0.00 0.00 0.00 4.75
214 215 1.218316 CCCTGTCTAACCGTCTGCC 59.782 63.158 0.00 0.00 0.00 4.85
215 216 1.218316 CCCCTGTCTAACCGTCTGC 59.782 63.158 0.00 0.00 0.00 4.26
216 217 1.218316 GCCCCTGTCTAACCGTCTG 59.782 63.158 0.00 0.00 0.00 3.51
217 218 1.078710 AGCCCCTGTCTAACCGTCT 59.921 57.895 0.00 0.00 0.00 4.18
218 219 1.218316 CAGCCCCTGTCTAACCGTC 59.782 63.158 0.00 0.00 0.00 4.79
219 220 2.291043 CCAGCCCCTGTCTAACCGT 61.291 63.158 0.00 0.00 0.00 4.83
220 221 1.338136 ATCCAGCCCCTGTCTAACCG 61.338 60.000 0.00 0.00 0.00 4.44
221 222 0.470341 GATCCAGCCCCTGTCTAACC 59.530 60.000 0.00 0.00 0.00 2.85
222 223 0.105039 CGATCCAGCCCCTGTCTAAC 59.895 60.000 0.00 0.00 0.00 2.34
223 224 1.048724 CCGATCCAGCCCCTGTCTAA 61.049 60.000 0.00 0.00 0.00 2.10
224 225 1.457643 CCGATCCAGCCCCTGTCTA 60.458 63.158 0.00 0.00 0.00 2.59
225 226 2.765807 CCGATCCAGCCCCTGTCT 60.766 66.667 0.00 0.00 0.00 3.41
226 227 3.083997 ACCGATCCAGCCCCTGTC 61.084 66.667 0.00 0.00 0.00 3.51
227 228 3.402681 CACCGATCCAGCCCCTGT 61.403 66.667 0.00 0.00 0.00 4.00
228 229 4.181010 CCACCGATCCAGCCCCTG 62.181 72.222 0.00 0.00 0.00 4.45
231 232 4.489771 CACCCACCGATCCAGCCC 62.490 72.222 0.00 0.00 0.00 5.19
232 233 4.489771 CCACCCACCGATCCAGCC 62.490 72.222 0.00 0.00 0.00 4.85
233 234 4.489771 CCCACCCACCGATCCAGC 62.490 72.222 0.00 0.00 0.00 4.85
234 235 2.687200 TCCCACCCACCGATCCAG 60.687 66.667 0.00 0.00 0.00 3.86
235 236 2.687200 CTCCCACCCACCGATCCA 60.687 66.667 0.00 0.00 0.00 3.41
236 237 2.365105 TCTCCCACCCACCGATCC 60.365 66.667 0.00 0.00 0.00 3.36
237 238 2.435693 CCTCTCCCACCCACCGATC 61.436 68.421 0.00 0.00 0.00 3.69
238 239 2.365635 CCTCTCCCACCCACCGAT 60.366 66.667 0.00 0.00 0.00 4.18
239 240 3.168759 TTCCTCTCCCACCCACCGA 62.169 63.158 0.00 0.00 0.00 4.69
240 241 2.606519 TTCCTCTCCCACCCACCG 60.607 66.667 0.00 0.00 0.00 4.94
241 242 0.840722 TTCTTCCTCTCCCACCCACC 60.841 60.000 0.00 0.00 0.00 4.61
242 243 0.615850 CTTCTTCCTCTCCCACCCAC 59.384 60.000 0.00 0.00 0.00 4.61
243 244 0.491823 TCTTCTTCCTCTCCCACCCA 59.508 55.000 0.00 0.00 0.00 4.51
244 245 1.199615 CTCTTCTTCCTCTCCCACCC 58.800 60.000 0.00 0.00 0.00 4.61
245 246 2.239681 TCTCTTCTTCCTCTCCCACC 57.760 55.000 0.00 0.00 0.00 4.61
246 247 3.325135 TGTTTCTCTTCTTCCTCTCCCAC 59.675 47.826 0.00 0.00 0.00 4.61
247 248 3.587498 TGTTTCTCTTCTTCCTCTCCCA 58.413 45.455 0.00 0.00 0.00 4.37
248 249 4.625607 TTGTTTCTCTTCTTCCTCTCCC 57.374 45.455 0.00 0.00 0.00 4.30
249 250 7.123547 TCTCTATTGTTTCTCTTCTTCCTCTCC 59.876 40.741 0.00 0.00 0.00 3.71
250 251 7.973944 GTCTCTATTGTTTCTCTTCTTCCTCTC 59.026 40.741 0.00 0.00 0.00 3.20
251 252 7.093509 GGTCTCTATTGTTTCTCTTCTTCCTCT 60.094 40.741 0.00 0.00 0.00 3.69
252 253 7.039270 GGTCTCTATTGTTTCTCTTCTTCCTC 58.961 42.308 0.00 0.00 0.00 3.71
253 254 6.350612 CGGTCTCTATTGTTTCTCTTCTTCCT 60.351 42.308 0.00 0.00 0.00 3.36
254 255 5.808030 CGGTCTCTATTGTTTCTCTTCTTCC 59.192 44.000 0.00 0.00 0.00 3.46
255 256 5.808030 CCGGTCTCTATTGTTTCTCTTCTTC 59.192 44.000 0.00 0.00 0.00 2.87
256 257 5.246429 ACCGGTCTCTATTGTTTCTCTTCTT 59.754 40.000 0.00 0.00 0.00 2.52
257 258 4.773149 ACCGGTCTCTATTGTTTCTCTTCT 59.227 41.667 0.00 0.00 0.00 2.85
258 259 5.074584 ACCGGTCTCTATTGTTTCTCTTC 57.925 43.478 0.00 0.00 0.00 2.87
259 260 5.485209 AACCGGTCTCTATTGTTTCTCTT 57.515 39.130 8.04 0.00 0.00 2.85
260 261 5.011738 TCAAACCGGTCTCTATTGTTTCTCT 59.988 40.000 8.04 0.00 0.00 3.10
261 262 5.235516 TCAAACCGGTCTCTATTGTTTCTC 58.764 41.667 8.04 0.00 0.00 2.87
262 263 5.223449 TCAAACCGGTCTCTATTGTTTCT 57.777 39.130 8.04 0.00 0.00 2.52
263 264 4.392138 CCTCAAACCGGTCTCTATTGTTTC 59.608 45.833 8.04 0.00 0.00 2.78
264 265 4.324267 CCTCAAACCGGTCTCTATTGTTT 58.676 43.478 8.04 0.00 0.00 2.83
265 266 3.868754 GCCTCAAACCGGTCTCTATTGTT 60.869 47.826 8.04 0.00 0.00 2.83
266 267 2.354805 GCCTCAAACCGGTCTCTATTGT 60.355 50.000 8.04 0.00 0.00 2.71
267 268 2.093447 AGCCTCAAACCGGTCTCTATTG 60.093 50.000 8.04 8.82 0.00 1.90
268 269 2.093447 CAGCCTCAAACCGGTCTCTATT 60.093 50.000 8.04 0.00 0.00 1.73
269 270 1.482593 CAGCCTCAAACCGGTCTCTAT 59.517 52.381 8.04 0.00 0.00 1.98
270 271 0.895530 CAGCCTCAAACCGGTCTCTA 59.104 55.000 8.04 0.00 0.00 2.43
271 272 0.832135 TCAGCCTCAAACCGGTCTCT 60.832 55.000 8.04 0.00 0.00 3.10
272 273 0.034896 TTCAGCCTCAAACCGGTCTC 59.965 55.000 8.04 0.00 0.00 3.36
273 274 0.035458 CTTCAGCCTCAAACCGGTCT 59.965 55.000 8.04 0.00 0.00 3.85
274 275 0.034896 TCTTCAGCCTCAAACCGGTC 59.965 55.000 8.04 0.00 0.00 4.79
275 276 0.250338 GTCTTCAGCCTCAAACCGGT 60.250 55.000 0.00 0.00 0.00 5.28
276 277 1.291877 CGTCTTCAGCCTCAAACCGG 61.292 60.000 0.00 0.00 0.00 5.28
277 278 0.319555 TCGTCTTCAGCCTCAAACCG 60.320 55.000 0.00 0.00 0.00 4.44
278 279 1.801178 CTTCGTCTTCAGCCTCAAACC 59.199 52.381 0.00 0.00 0.00 3.27
279 280 1.195674 GCTTCGTCTTCAGCCTCAAAC 59.804 52.381 0.00 0.00 0.00 2.93
280 281 1.512926 GCTTCGTCTTCAGCCTCAAA 58.487 50.000 0.00 0.00 0.00 2.69
281 282 0.667487 CGCTTCGTCTTCAGCCTCAA 60.667 55.000 0.00 0.00 31.82 3.02
282 283 1.080501 CGCTTCGTCTTCAGCCTCA 60.081 57.895 0.00 0.00 31.82 3.86
283 284 0.667792 AACGCTTCGTCTTCAGCCTC 60.668 55.000 0.00 0.00 39.99 4.70
284 285 0.601558 TAACGCTTCGTCTTCAGCCT 59.398 50.000 0.00 0.00 39.99 4.58
285 286 1.425412 TTAACGCTTCGTCTTCAGCC 58.575 50.000 0.00 0.00 39.99 4.85
286 287 2.029365 GGATTAACGCTTCGTCTTCAGC 59.971 50.000 0.00 0.00 39.99 4.26
287 288 3.250744 TGGATTAACGCTTCGTCTTCAG 58.749 45.455 0.00 0.00 39.99 3.02
288 289 3.306917 TGGATTAACGCTTCGTCTTCA 57.693 42.857 0.00 0.00 39.99 3.02
289 290 3.678548 AGTTGGATTAACGCTTCGTCTTC 59.321 43.478 0.00 0.00 44.15 2.87
290 291 3.432252 CAGTTGGATTAACGCTTCGTCTT 59.568 43.478 0.00 0.00 44.15 3.01
291 292 2.993899 CAGTTGGATTAACGCTTCGTCT 59.006 45.455 0.00 0.00 44.15 4.18
292 293 2.735134 ACAGTTGGATTAACGCTTCGTC 59.265 45.455 0.00 0.00 44.15 4.20
293 294 2.762745 ACAGTTGGATTAACGCTTCGT 58.237 42.857 0.00 0.00 44.15 3.85
294 295 3.185594 TCAACAGTTGGATTAACGCTTCG 59.814 43.478 13.52 0.00 44.15 3.79
295 296 4.451096 TCTCAACAGTTGGATTAACGCTTC 59.549 41.667 13.52 0.00 44.15 3.86
296 297 4.213482 GTCTCAACAGTTGGATTAACGCTT 59.787 41.667 13.52 0.00 44.15 4.68
297 298 3.746492 GTCTCAACAGTTGGATTAACGCT 59.254 43.478 13.52 0.00 44.15 5.07
298 299 3.496884 TGTCTCAACAGTTGGATTAACGC 59.503 43.478 13.52 0.00 44.15 4.84
299 300 4.084013 GGTGTCTCAACAGTTGGATTAACG 60.084 45.833 13.52 0.00 44.15 3.18
300 301 4.819630 TGGTGTCTCAACAGTTGGATTAAC 59.180 41.667 13.52 6.08 35.64 2.01
301 302 5.042463 TGGTGTCTCAACAGTTGGATTAA 57.958 39.130 13.52 0.00 35.64 1.40
302 303 4.504864 CCTGGTGTCTCAACAGTTGGATTA 60.505 45.833 13.52 1.70 46.65 1.75
303 304 3.480470 CTGGTGTCTCAACAGTTGGATT 58.520 45.455 13.52 0.00 43.46 3.01
304 305 2.224621 CCTGGTGTCTCAACAGTTGGAT 60.225 50.000 13.52 0.00 46.65 3.41
305 306 1.140852 CCTGGTGTCTCAACAGTTGGA 59.859 52.381 13.52 6.88 46.65 3.53
306 307 1.597742 CCTGGTGTCTCAACAGTTGG 58.402 55.000 13.52 4.61 46.65 3.77
307 308 1.597742 CCCTGGTGTCTCAACAGTTG 58.402 55.000 6.99 6.99 46.65 3.16
308 309 0.474184 CCCCTGGTGTCTCAACAGTT 59.526 55.000 12.73 0.00 46.65 3.16
309 310 1.418908 CCCCCTGGTGTCTCAACAGT 61.419 60.000 12.73 0.00 46.65 3.55
311 312 1.074090 TCCCCCTGGTGTCTCAACA 60.074 57.895 0.00 0.00 0.00 3.33
312 313 0.836400 TCTCCCCCTGGTGTCTCAAC 60.836 60.000 0.00 0.00 0.00 3.18
313 314 0.104672 TTCTCCCCCTGGTGTCTCAA 60.105 55.000 0.00 0.00 0.00 3.02
314 315 0.119155 ATTCTCCCCCTGGTGTCTCA 59.881 55.000 0.00 0.00 0.00 3.27
315 316 0.833949 GATTCTCCCCCTGGTGTCTC 59.166 60.000 0.00 0.00 0.00 3.36
316 317 0.419459 AGATTCTCCCCCTGGTGTCT 59.581 55.000 0.00 0.00 0.00 3.41
317 318 1.763545 GTAGATTCTCCCCCTGGTGTC 59.236 57.143 0.00 0.00 0.00 3.67
318 319 1.366435 AGTAGATTCTCCCCCTGGTGT 59.634 52.381 0.00 0.00 0.00 4.16
319 320 1.765314 CAGTAGATTCTCCCCCTGGTG 59.235 57.143 0.00 0.00 0.00 4.17
320 321 1.366435 ACAGTAGATTCTCCCCCTGGT 59.634 52.381 0.00 0.00 0.00 4.00
321 322 2.182516 ACAGTAGATTCTCCCCCTGG 57.817 55.000 0.00 0.00 0.00 4.45
322 323 4.576330 AAAACAGTAGATTCTCCCCCTG 57.424 45.455 0.00 0.00 0.00 4.45
323 324 4.601857 TGAAAAACAGTAGATTCTCCCCCT 59.398 41.667 0.00 0.00 0.00 4.79
324 325 4.918588 TGAAAAACAGTAGATTCTCCCCC 58.081 43.478 0.00 0.00 0.00 5.40
338 339 2.737039 GCCGCCTGAAAACTGAAAAACA 60.737 45.455 0.00 0.00 0.00 2.83
339 340 1.858458 GCCGCCTGAAAACTGAAAAAC 59.142 47.619 0.00 0.00 0.00 2.43
340 341 1.754226 AGCCGCCTGAAAACTGAAAAA 59.246 42.857 0.00 0.00 0.00 1.94
341 342 1.066908 CAGCCGCCTGAAAACTGAAAA 59.933 47.619 0.00 0.00 41.77 2.29
342 343 0.667993 CAGCCGCCTGAAAACTGAAA 59.332 50.000 0.00 0.00 41.77 2.69
343 344 1.172180 CCAGCCGCCTGAAAACTGAA 61.172 55.000 0.00 0.00 41.77 3.02
344 345 1.600636 CCAGCCGCCTGAAAACTGA 60.601 57.895 0.00 0.00 41.77 3.41
345 346 2.956987 CCAGCCGCCTGAAAACTG 59.043 61.111 0.00 0.00 41.77 3.16
346 347 2.985847 GCCAGCCGCCTGAAAACT 60.986 61.111 0.00 0.00 41.77 2.66
347 348 4.404654 CGCCAGCCGCCTGAAAAC 62.405 66.667 0.00 0.00 41.77 2.43
363 364 4.593864 GAAGGGAGCGGCTAGGCG 62.594 72.222 32.23 32.23 38.18 5.52
364 365 4.243008 GGAAGGGAGCGGCTAGGC 62.243 72.222 0.60 6.15 0.00 3.93
365 366 2.764128 TGGAAGGGAGCGGCTAGG 60.764 66.667 0.60 0.00 0.00 3.02
366 367 1.330655 TTCTGGAAGGGAGCGGCTAG 61.331 60.000 0.60 0.00 0.00 3.42
367 368 0.907704 TTTCTGGAAGGGAGCGGCTA 60.908 55.000 0.60 0.00 0.00 3.93
368 369 1.779061 TTTTCTGGAAGGGAGCGGCT 61.779 55.000 0.00 0.00 0.00 5.52
369 370 1.303317 TTTTCTGGAAGGGAGCGGC 60.303 57.895 0.00 0.00 0.00 6.53
370 371 0.250727 TGTTTTCTGGAAGGGAGCGG 60.251 55.000 0.00 0.00 0.00 5.52
371 372 1.160137 CTGTTTTCTGGAAGGGAGCG 58.840 55.000 0.00 0.00 0.00 5.03
372 373 2.039084 TCTCTGTTTTCTGGAAGGGAGC 59.961 50.000 0.00 0.00 0.00 4.70
373 374 3.071602 TGTCTCTGTTTTCTGGAAGGGAG 59.928 47.826 0.00 0.00 0.00 4.30
374 375 3.045634 TGTCTCTGTTTTCTGGAAGGGA 58.954 45.455 0.00 0.00 0.00 4.20
375 376 3.142174 GTGTCTCTGTTTTCTGGAAGGG 58.858 50.000 0.00 0.00 0.00 3.95
376 377 2.802816 CGTGTCTCTGTTTTCTGGAAGG 59.197 50.000 0.00 0.00 0.00 3.46
377 378 2.802816 CCGTGTCTCTGTTTTCTGGAAG 59.197 50.000 0.00 0.00 0.00 3.46
378 379 2.484770 CCCGTGTCTCTGTTTTCTGGAA 60.485 50.000 0.00 0.00 0.00 3.53
379 380 1.070134 CCCGTGTCTCTGTTTTCTGGA 59.930 52.381 0.00 0.00 0.00 3.86
380 381 1.070134 TCCCGTGTCTCTGTTTTCTGG 59.930 52.381 0.00 0.00 0.00 3.86
381 382 2.526304 TCCCGTGTCTCTGTTTTCTG 57.474 50.000 0.00 0.00 0.00 3.02
382 383 2.224305 CCTTCCCGTGTCTCTGTTTTCT 60.224 50.000 0.00 0.00 0.00 2.52
383 384 2.143925 CCTTCCCGTGTCTCTGTTTTC 58.856 52.381 0.00 0.00 0.00 2.29
384 385 1.766496 TCCTTCCCGTGTCTCTGTTTT 59.234 47.619 0.00 0.00 0.00 2.43
385 386 1.420430 TCCTTCCCGTGTCTCTGTTT 58.580 50.000 0.00 0.00 0.00 2.83
386 387 1.420430 TTCCTTCCCGTGTCTCTGTT 58.580 50.000 0.00 0.00 0.00 3.16
387 388 1.420430 TTTCCTTCCCGTGTCTCTGT 58.580 50.000 0.00 0.00 0.00 3.41
388 389 2.622436 GATTTCCTTCCCGTGTCTCTG 58.378 52.381 0.00 0.00 0.00 3.35
389 390 1.555533 GGATTTCCTTCCCGTGTCTCT 59.444 52.381 0.00 0.00 0.00 3.10
390 391 1.278127 TGGATTTCCTTCCCGTGTCTC 59.722 52.381 0.00 0.00 34.67 3.36
391 392 1.358152 TGGATTTCCTTCCCGTGTCT 58.642 50.000 0.00 0.00 34.67 3.41
392 393 2.017049 CATGGATTTCCTTCCCGTGTC 58.983 52.381 0.00 0.00 34.67 3.67
393 394 1.340991 CCATGGATTTCCTTCCCGTGT 60.341 52.381 5.56 0.00 35.70 4.49
394 395 1.064758 TCCATGGATTTCCTTCCCGTG 60.065 52.381 11.44 0.00 36.87 4.94
395 396 1.295020 TCCATGGATTTCCTTCCCGT 58.705 50.000 11.44 0.00 34.67 5.28
396 397 2.435372 TTCCATGGATTTCCTTCCCG 57.565 50.000 17.06 0.00 34.67 5.14
397 398 3.914771 TGATTCCATGGATTTCCTTCCC 58.085 45.455 17.06 0.00 34.67 3.97
398 399 5.664457 GTTTGATTCCATGGATTTCCTTCC 58.336 41.667 17.06 0.00 36.82 3.46
399 400 5.105756 ACGTTTGATTCCATGGATTTCCTTC 60.106 40.000 17.06 6.80 36.82 3.46
400 401 4.772100 ACGTTTGATTCCATGGATTTCCTT 59.228 37.500 17.06 0.00 36.82 3.36
401 402 4.344104 ACGTTTGATTCCATGGATTTCCT 58.656 39.130 17.06 0.00 36.82 3.36
402 403 4.718940 ACGTTTGATTCCATGGATTTCC 57.281 40.909 17.06 5.80 0.00 3.13
403 404 5.708948 TGAACGTTTGATTCCATGGATTTC 58.291 37.500 17.06 15.91 0.00 2.17
404 405 5.720371 TGAACGTTTGATTCCATGGATTT 57.280 34.783 17.06 6.32 0.00 2.17
405 406 5.469479 GTTGAACGTTTGATTCCATGGATT 58.531 37.500 17.06 12.65 0.00 3.01
406 407 4.379394 CGTTGAACGTTTGATTCCATGGAT 60.379 41.667 17.06 5.79 36.74 3.41
407 408 3.058570 CGTTGAACGTTTGATTCCATGGA 60.059 43.478 11.44 11.44 36.74 3.41
408 409 3.233578 CGTTGAACGTTTGATTCCATGG 58.766 45.455 9.94 4.97 36.74 3.66
409 410 3.233578 CCGTTGAACGTTTGATTCCATG 58.766 45.455 17.05 0.00 40.58 3.66
410 411 2.227865 CCCGTTGAACGTTTGATTCCAT 59.772 45.455 17.05 0.00 40.58 3.41
411 412 1.604755 CCCGTTGAACGTTTGATTCCA 59.395 47.619 17.05 0.00 40.58 3.53
412 413 1.068816 CCCCGTTGAACGTTTGATTCC 60.069 52.381 17.05 0.00 40.58 3.01
413 414 1.605232 ACCCCGTTGAACGTTTGATTC 59.395 47.619 17.05 0.00 40.58 2.52
414 415 1.605232 GACCCCGTTGAACGTTTGATT 59.395 47.619 17.05 0.00 40.58 2.57
415 416 1.202722 AGACCCCGTTGAACGTTTGAT 60.203 47.619 17.05 0.00 40.58 2.57
416 417 0.178533 AGACCCCGTTGAACGTTTGA 59.821 50.000 17.05 0.00 40.58 2.69
417 418 1.003223 GAAGACCCCGTTGAACGTTTG 60.003 52.381 17.05 6.88 40.58 2.93
418 419 1.302366 GAAGACCCCGTTGAACGTTT 58.698 50.000 17.05 0.00 40.58 3.60
419 420 0.877213 CGAAGACCCCGTTGAACGTT 60.877 55.000 17.05 0.00 40.58 3.99
420 421 1.300388 CGAAGACCCCGTTGAACGT 60.300 57.895 17.05 0.00 40.58 3.99
421 422 1.300388 ACGAAGACCCCGTTGAACG 60.300 57.895 11.30 11.30 42.11 3.95
422 423 1.838568 GCACGAAGACCCCGTTGAAC 61.839 60.000 0.00 0.00 38.29 3.18
423 424 1.595929 GCACGAAGACCCCGTTGAA 60.596 57.895 0.00 0.00 38.29 2.69
424 425 2.029964 GCACGAAGACCCCGTTGA 59.970 61.111 0.00 0.00 38.29 3.18
425 426 3.047877 GGCACGAAGACCCCGTTG 61.048 66.667 0.00 0.00 38.29 4.10
426 427 2.890766 ATGGCACGAAGACCCCGTT 61.891 57.895 0.00 0.00 38.29 4.44
427 428 3.319198 ATGGCACGAAGACCCCGT 61.319 61.111 0.00 0.00 41.36 5.28
428 429 2.796483 TTCATGGCACGAAGACCCCG 62.796 60.000 0.00 0.00 0.00 5.73
429 430 1.002624 TTCATGGCACGAAGACCCC 60.003 57.895 0.00 0.00 0.00 4.95
430 431 1.026718 CCTTCATGGCACGAAGACCC 61.027 60.000 23.63 0.00 42.05 4.46
431 432 0.321653 ACCTTCATGGCACGAAGACC 60.322 55.000 23.63 0.00 42.05 3.85
432 433 0.798776 CACCTTCATGGCACGAAGAC 59.201 55.000 23.63 0.00 42.05 3.01
433 434 0.396435 ACACCTTCATGGCACGAAGA 59.604 50.000 23.63 0.73 42.05 2.87
434 435 0.518636 CACACCTTCATGGCACGAAG 59.481 55.000 15.96 15.96 40.22 3.79
435 436 1.514678 GCACACCTTCATGGCACGAA 61.515 55.000 0.00 0.00 40.22 3.85
436 437 1.965930 GCACACCTTCATGGCACGA 60.966 57.895 0.00 0.00 40.22 4.35
437 438 2.562912 GCACACCTTCATGGCACG 59.437 61.111 0.00 0.00 40.22 5.34
438 439 2.964978 GGCACACCTTCATGGCAC 59.035 61.111 0.00 0.00 40.91 5.01
448 449 0.881600 AACGAACGGTAAGGCACACC 60.882 55.000 0.00 0.00 0.00 4.16
449 450 1.782044 TAACGAACGGTAAGGCACAC 58.218 50.000 0.00 0.00 0.00 3.82
450 451 2.134346 GTTAACGAACGGTAAGGCACA 58.866 47.619 4.94 0.00 0.00 4.57
451 452 2.407090 AGTTAACGAACGGTAAGGCAC 58.593 47.619 4.94 0.00 40.76 5.01
452 453 2.818130 AGTTAACGAACGGTAAGGCA 57.182 45.000 4.94 0.00 40.76 4.75
453 454 3.838120 AGTAGTTAACGAACGGTAAGGC 58.162 45.455 4.94 0.00 40.76 4.35
454 455 7.920738 AGTATAGTAGTTAACGAACGGTAAGG 58.079 38.462 4.94 0.00 40.76 2.69
455 456 9.851043 GTAGTATAGTAGTTAACGAACGGTAAG 57.149 37.037 4.94 0.00 40.76 2.34
456 457 9.595823 AGTAGTATAGTAGTTAACGAACGGTAA 57.404 33.333 0.00 0.46 40.76 2.85
457 458 9.031360 CAGTAGTATAGTAGTTAACGAACGGTA 57.969 37.037 0.00 0.00 40.76 4.02
458 459 7.549488 ACAGTAGTATAGTAGTTAACGAACGGT 59.451 37.037 0.00 0.00 40.76 4.83
459 460 7.910304 ACAGTAGTATAGTAGTTAACGAACGG 58.090 38.462 0.00 0.00 40.76 4.44
472 473 9.765795 GCATTTTCATTCCTACAGTAGTATAGT 57.234 33.333 6.84 0.00 0.00 2.12
473 474 9.988815 AGCATTTTCATTCCTACAGTAGTATAG 57.011 33.333 6.84 0.00 0.00 1.31
477 478 8.947115 GTTTAGCATTTTCATTCCTACAGTAGT 58.053 33.333 6.84 0.00 0.00 2.73
478 479 8.116753 CGTTTAGCATTTTCATTCCTACAGTAG 58.883 37.037 0.00 0.00 0.00 2.57
479 480 7.820386 TCGTTTAGCATTTTCATTCCTACAGTA 59.180 33.333 0.00 0.00 0.00 2.74
480 481 6.653320 TCGTTTAGCATTTTCATTCCTACAGT 59.347 34.615 0.00 0.00 0.00 3.55
481 482 7.072177 TCGTTTAGCATTTTCATTCCTACAG 57.928 36.000 0.00 0.00 0.00 2.74
482 483 6.653320 ACTCGTTTAGCATTTTCATTCCTACA 59.347 34.615 0.00 0.00 0.00 2.74
483 484 7.073342 ACTCGTTTAGCATTTTCATTCCTAC 57.927 36.000 0.00 0.00 0.00 3.18
484 485 8.958119 ATACTCGTTTAGCATTTTCATTCCTA 57.042 30.769 0.00 0.00 0.00 2.94
485 486 7.865706 ATACTCGTTTAGCATTTTCATTCCT 57.134 32.000 0.00 0.00 0.00 3.36
486 487 9.599322 CATATACTCGTTTAGCATTTTCATTCC 57.401 33.333 0.00 0.00 0.00 3.01
487 488 9.107367 GCATATACTCGTTTAGCATTTTCATTC 57.893 33.333 0.00 0.00 0.00 2.67
488 489 8.620416 TGCATATACTCGTTTAGCATTTTCATT 58.380 29.630 0.00 0.00 0.00 2.57
489 490 8.153479 TGCATATACTCGTTTAGCATTTTCAT 57.847 30.769 0.00 0.00 0.00 2.57
490 491 7.279981 ACTGCATATACTCGTTTAGCATTTTCA 59.720 33.333 0.00 0.00 0.00 2.69
491 492 7.630924 ACTGCATATACTCGTTTAGCATTTTC 58.369 34.615 0.00 0.00 0.00 2.29
492 493 7.254795 GGACTGCATATACTCGTTTAGCATTTT 60.255 37.037 0.00 0.00 0.00 1.82
493 494 6.202954 GGACTGCATATACTCGTTTAGCATTT 59.797 38.462 0.00 0.00 0.00 2.32
494 495 5.696724 GGACTGCATATACTCGTTTAGCATT 59.303 40.000 0.00 0.00 0.00 3.56
495 496 5.221441 TGGACTGCATATACTCGTTTAGCAT 60.221 40.000 0.00 0.00 0.00 3.79
496 497 4.098807 TGGACTGCATATACTCGTTTAGCA 59.901 41.667 0.00 0.00 0.00 3.49
497 498 4.617959 TGGACTGCATATACTCGTTTAGC 58.382 43.478 0.00 0.00 0.00 3.09
498 499 5.175856 GCTTGGACTGCATATACTCGTTTAG 59.824 44.000 0.00 0.00 0.00 1.85
499 500 5.047847 GCTTGGACTGCATATACTCGTTTA 58.952 41.667 0.00 0.00 0.00 2.01
500 501 3.871594 GCTTGGACTGCATATACTCGTTT 59.128 43.478 0.00 0.00 0.00 3.60
501 502 3.458189 GCTTGGACTGCATATACTCGTT 58.542 45.455 0.00 0.00 0.00 3.85
502 503 2.224066 GGCTTGGACTGCATATACTCGT 60.224 50.000 0.00 0.00 0.00 4.18
503 504 2.224042 TGGCTTGGACTGCATATACTCG 60.224 50.000 0.00 0.00 0.00 4.18
504 505 3.475566 TGGCTTGGACTGCATATACTC 57.524 47.619 0.00 0.00 0.00 2.59
505 506 3.931907 TTGGCTTGGACTGCATATACT 57.068 42.857 0.00 0.00 0.00 2.12
506 507 4.981806 TTTTGGCTTGGACTGCATATAC 57.018 40.909 0.00 0.00 0.00 1.47
530 531 1.201880 GAGACACCCCGAGTAGTGTTC 59.798 57.143 0.00 0.00 46.87 3.18
533 534 1.096416 GAGAGACACCCCGAGTAGTG 58.904 60.000 0.00 0.00 39.93 2.74
536 540 0.255318 GAGGAGAGACACCCCGAGTA 59.745 60.000 0.00 0.00 0.00 2.59
537 541 1.000646 GAGGAGAGACACCCCGAGT 60.001 63.158 0.00 0.00 0.00 4.18
538 542 2.115911 CGAGGAGAGACACCCCGAG 61.116 68.421 0.00 0.00 0.00 4.63
541 545 2.363147 AGCGAGGAGAGACACCCC 60.363 66.667 0.00 0.00 0.00 4.95
542 546 1.939769 GACAGCGAGGAGAGACACCC 61.940 65.000 0.00 0.00 0.00 4.61
545 549 1.550327 AATGACAGCGAGGAGAGACA 58.450 50.000 0.00 0.00 0.00 3.41
848 881 1.844289 GGTGGTGGTAGTGGTGGGA 60.844 63.158 0.00 0.00 0.00 4.37
857 890 0.409876 AGAGCAGAGAGGTGGTGGTA 59.590 55.000 0.00 0.00 0.00 3.25
874 916 2.636412 CGCCCGAGTGAGTGGAAGA 61.636 63.158 0.00 0.00 0.00 2.87
951 993 1.348036 ACAGAGGAGAAAAACGGAGGG 59.652 52.381 0.00 0.00 0.00 4.30
956 998 2.135933 AGCGAACAGAGGAGAAAAACG 58.864 47.619 0.00 0.00 0.00 3.60
1025 1068 4.314440 ACTTGCGCTTCCTGCCGA 62.314 61.111 9.73 0.00 38.78 5.54
1120 1163 2.660064 GGAGGCGGAAGAAGCTGGA 61.660 63.158 0.00 0.00 34.52 3.86
1526 1590 1.298859 GAACACCGTCATGGACAGGC 61.299 60.000 0.00 0.00 42.00 4.85
2049 2113 3.403057 CCCACGCAGTTCACGTCG 61.403 66.667 0.00 0.00 41.61 5.12
2111 2175 3.842925 ATGAAGCACCCGTTGGCGT 62.843 57.895 0.00 0.00 36.15 5.68
2319 2702 3.535561 ACATCTCCCGAATTACTGCAAG 58.464 45.455 0.00 0.00 42.29 4.01
2356 2742 1.979155 CCAGGAGACAGACGGCTGA 60.979 63.158 28.78 0.00 45.17 4.26
2358 2744 2.522198 ATCCCAGGAGACAGACGGCT 62.522 60.000 0.00 0.00 0.00 5.52
2359 2745 2.060980 ATCCCAGGAGACAGACGGC 61.061 63.158 0.00 0.00 0.00 5.68
2360 2746 0.972983 ACATCCCAGGAGACAGACGG 60.973 60.000 0.00 0.00 0.00 4.79
2443 2834 1.221293 GCCACTGAGCTCTGCAGAT 59.779 57.895 18.63 2.44 36.86 2.90
2444 2835 2.661399 GCCACTGAGCTCTGCAGA 59.339 61.111 17.19 17.19 36.86 4.26
2446 2837 3.292500 CTCGCCACTGAGCTCTGCA 62.293 63.158 19.49 0.00 0.00 4.41
2484 2875 6.642540 GTCAATTGCTTGTTAAGGAAAGAAGG 59.357 38.462 0.00 0.00 42.24 3.46
2511 2902 5.692613 AGGTCTACTATGACGCATAGAAC 57.307 43.478 24.30 18.93 44.55 3.01
2540 2953 7.505585 TGAACTCCTTGGTCTGAACATAAAAAT 59.494 33.333 0.00 0.00 32.49 1.82
2548 2961 4.881850 TCTTTTGAACTCCTTGGTCTGAAC 59.118 41.667 0.00 0.00 32.49 3.18
2596 3011 4.440250 CCGGGTACTTCTCTAGTTCATGTG 60.440 50.000 0.00 0.00 38.33 3.21
2657 3141 6.068010 TCATCTTCATGTGTGTTTTTAGGGT 58.932 36.000 0.00 0.00 0.00 4.34
2658 3142 6.573664 TCATCTTCATGTGTGTTTTTAGGG 57.426 37.500 0.00 0.00 0.00 3.53
2659 3143 7.040478 TCCTTCATCTTCATGTGTGTTTTTAGG 60.040 37.037 0.00 0.00 0.00 2.69
2660 3144 7.874940 TCCTTCATCTTCATGTGTGTTTTTAG 58.125 34.615 0.00 0.00 0.00 1.85
2661 3145 7.815840 TCCTTCATCTTCATGTGTGTTTTTA 57.184 32.000 0.00 0.00 0.00 1.52
2662 3146 6.713762 TCCTTCATCTTCATGTGTGTTTTT 57.286 33.333 0.00 0.00 0.00 1.94
2663 3147 6.713762 TTCCTTCATCTTCATGTGTGTTTT 57.286 33.333 0.00 0.00 0.00 2.43
2664 3148 6.713762 TTTCCTTCATCTTCATGTGTGTTT 57.286 33.333 0.00 0.00 0.00 2.83
2665 3149 6.906157 ATTTCCTTCATCTTCATGTGTGTT 57.094 33.333 0.00 0.00 0.00 3.32
2666 3150 7.448161 TGTTATTTCCTTCATCTTCATGTGTGT 59.552 33.333 0.00 0.00 0.00 3.72
2667 3151 7.819644 TGTTATTTCCTTCATCTTCATGTGTG 58.180 34.615 0.00 0.00 0.00 3.82
2668 3152 8.585471 ATGTTATTTCCTTCATCTTCATGTGT 57.415 30.769 0.00 0.00 0.00 3.72
2669 3153 7.854422 CGATGTTATTTCCTTCATCTTCATGTG 59.146 37.037 0.00 0.00 35.82 3.21
2670 3154 7.770433 TCGATGTTATTTCCTTCATCTTCATGT 59.230 33.333 0.00 0.00 35.82 3.21
2671 3155 8.146479 TCGATGTTATTTCCTTCATCTTCATG 57.854 34.615 0.00 0.00 35.82 3.07
2672 3156 8.206867 TCTCGATGTTATTTCCTTCATCTTCAT 58.793 33.333 0.00 0.00 35.82 2.57
2673 3157 7.555965 TCTCGATGTTATTTCCTTCATCTTCA 58.444 34.615 0.00 0.00 35.82 3.02
2674 3158 8.494347 CATCTCGATGTTATTTCCTTCATCTTC 58.506 37.037 0.00 0.00 35.82 2.87
2675 3159 7.041508 GCATCTCGATGTTATTTCCTTCATCTT 60.042 37.037 8.54 0.00 40.80 2.40
2676 3160 6.426328 GCATCTCGATGTTATTTCCTTCATCT 59.574 38.462 8.54 0.00 40.80 2.90
2677 3161 6.203530 TGCATCTCGATGTTATTTCCTTCATC 59.796 38.462 8.54 0.00 40.80 2.92
2678 3162 6.057533 TGCATCTCGATGTTATTTCCTTCAT 58.942 36.000 8.54 0.00 40.80 2.57
2679 3163 5.427378 TGCATCTCGATGTTATTTCCTTCA 58.573 37.500 8.54 0.00 40.80 3.02
2684 3168 6.798959 GGCTTATTGCATCTCGATGTTATTTC 59.201 38.462 8.54 0.00 45.15 2.17
2715 3199 6.464222 ACTCATTTAGTTTCTTGGACGATCA 58.536 36.000 0.00 0.00 33.35 2.92
2735 3250 3.244887 TCTCTCCTCCAACTGAACTCA 57.755 47.619 0.00 0.00 0.00 3.41
2741 3256 7.255277 CCTTTTACTTTTTCTCTCCTCCAACTG 60.255 40.741 0.00 0.00 0.00 3.16
2794 3313 3.119280 GCCGCTCTTCTCTTCTTACTTCT 60.119 47.826 0.00 0.00 0.00 2.85
2795 3314 3.183754 GCCGCTCTTCTCTTCTTACTTC 58.816 50.000 0.00 0.00 0.00 3.01
2796 3315 2.563179 TGCCGCTCTTCTCTTCTTACTT 59.437 45.455 0.00 0.00 0.00 2.24
2797 3316 2.165437 CTGCCGCTCTTCTCTTCTTACT 59.835 50.000 0.00 0.00 0.00 2.24
2798 3317 2.535331 CTGCCGCTCTTCTCTTCTTAC 58.465 52.381 0.00 0.00 0.00 2.34
2799 3318 1.478510 CCTGCCGCTCTTCTCTTCTTA 59.521 52.381 0.00 0.00 0.00 2.10
2800 3319 0.248843 CCTGCCGCTCTTCTCTTCTT 59.751 55.000 0.00 0.00 0.00 2.52
2866 3385 2.672996 GCTGTTGCATGGACGGGT 60.673 61.111 0.00 0.00 39.41 5.28
2930 3461 1.188219 TGTCAGTGAGAGTGGGGAGC 61.188 60.000 0.00 0.00 0.00 4.70
2932 3463 1.179174 CGTGTCAGTGAGAGTGGGGA 61.179 60.000 0.00 0.00 0.00 4.81
2933 3464 1.290324 CGTGTCAGTGAGAGTGGGG 59.710 63.158 0.00 0.00 0.00 4.96
2934 3465 1.290324 CCGTGTCAGTGAGAGTGGG 59.710 63.158 0.00 0.00 0.00 4.61
2935 3466 0.319040 CACCGTGTCAGTGAGAGTGG 60.319 60.000 6.88 6.88 37.42 4.00
2936 3467 0.385751 ACACCGTGTCAGTGAGAGTG 59.614 55.000 0.00 7.79 38.63 3.51
2937 3468 0.669077 GACACCGTGTCAGTGAGAGT 59.331 55.000 23.95 0.00 46.22 3.24
2938 3469 3.481009 GACACCGTGTCAGTGAGAG 57.519 57.895 23.95 0.00 46.22 3.20
2957 3488 2.438614 CTCTGACGGCGAGGGAGA 60.439 66.667 16.62 7.79 0.00 3.71
3012 3549 2.125673 GCGACTTTAGCCAGCGGA 60.126 61.111 0.00 0.00 0.00 5.54
3049 3586 0.757188 CAGGAGGCAGACGGTATCCT 60.757 60.000 0.00 0.00 41.08 3.24
3080 3617 1.202568 CTAAATGCATCTCGCGGCG 59.797 57.895 17.70 17.70 46.97 6.46
3081 3618 0.657840 AACTAAATGCATCTCGCGGC 59.342 50.000 6.13 1.26 46.97 6.53
3084 3621 1.268743 GCCCAACTAAATGCATCTCGC 60.269 52.381 0.00 0.00 42.89 5.03
3086 3623 2.288666 TCGCCCAACTAAATGCATCTC 58.711 47.619 0.00 0.00 0.00 2.75
3087 3624 2.418368 TCGCCCAACTAAATGCATCT 57.582 45.000 0.00 0.00 0.00 2.90
3091 3632 3.908213 TCTTTTTCGCCCAACTAAATGC 58.092 40.909 0.00 0.00 0.00 3.56
3093 3634 6.213677 GTCTTTCTTTTTCGCCCAACTAAAT 58.786 36.000 0.00 0.00 0.00 1.40
3112 3653 0.954449 TCTCGCCTCGTCTCGTCTTT 60.954 55.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.