Multiple sequence alignment - TraesCS2B01G193500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G193500 chr2B 100.000 2804 0 0 1 2804 169863360 169866163 0.000000e+00 5179
1 TraesCS2B01G193500 chr2B 87.854 601 37 8 1527 2108 577442847 577442264 0.000000e+00 673
2 TraesCS2B01G193500 chr2B 86.898 374 32 12 767 1138 5489751 5490109 1.210000e-108 403
3 TraesCS2B01G193500 chr2B 95.045 222 11 0 1184 1405 5490114 5490335 1.600000e-92 350
4 TraesCS2B01G193500 chr2B 93.956 182 10 1 188 369 398472284 398472104 9.900000e-70 274
5 TraesCS2B01G193500 chr2B 92.222 180 10 3 191 370 772982668 772982493 4.640000e-63 252
6 TraesCS2B01G193500 chr2B 91.803 183 12 3 189 370 799757461 799757281 4.640000e-63 252
7 TraesCS2B01G193500 chr2B 89.189 185 6 1 1398 1582 5490795 5490965 4.700000e-53 219
8 TraesCS2B01G193500 chr2D 90.425 2517 97 49 370 2803 118244737 118247192 0.000000e+00 3181
9 TraesCS2B01G193500 chr2A 88.169 2502 120 67 383 2803 120098124 120100530 0.000000e+00 2819
10 TraesCS2B01G193500 chr5A 93.514 185 10 2 185 368 479462885 479462702 9.900000e-70 274
11 TraesCS2B01G193500 chr5A 81.050 343 48 10 1233 1571 591082071 591082400 9.970000e-65 257
12 TraesCS2B01G193500 chrUn 92.473 186 10 1 189 370 60741738 60741923 2.140000e-66 263
13 TraesCS2B01G193500 chrUn 92.308 182 12 1 189 368 60683987 60684168 9.970000e-65 257
14 TraesCS2B01G193500 chrUn 96.040 101 4 0 270 370 411675549 411675649 6.210000e-37 165
15 TraesCS2B01G193500 chr5D 80.758 343 49 9 1233 1571 470377284 470377613 4.640000e-63 252
16 TraesCS2B01G193500 chr4B 96.842 95 3 0 276 370 656330592 656330686 2.890000e-35 159
17 TraesCS2B01G193500 chr4A 92.035 113 9 0 257 369 16200129 16200241 2.890000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G193500 chr2B 169863360 169866163 2803 False 5179 5179 100.000000 1 2804 1 chr2B.!!$F1 2803
1 TraesCS2B01G193500 chr2B 577442264 577442847 583 True 673 673 87.854000 1527 2108 1 chr2B.!!$R2 581
2 TraesCS2B01G193500 chr2B 5489751 5490965 1214 False 324 403 90.377333 767 1582 3 chr2B.!!$F2 815
3 TraesCS2B01G193500 chr2D 118244737 118247192 2455 False 3181 3181 90.425000 370 2803 1 chr2D.!!$F1 2433
4 TraesCS2B01G193500 chr2A 120098124 120100530 2406 False 2819 2819 88.169000 383 2803 1 chr2A.!!$F1 2420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.03601 CCAGCCAGGGTGAACACTAG 60.036 60.0 20.97 0.0 32.22 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 2580 1.138266 ACGACGAAATGTATGGAGGGG 59.862 52.381 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.481195 GTCCTGCAGCAAACCAGA 57.519 55.556 8.66 0.00 0.00 3.86
18 19 1.952263 GTCCTGCAGCAAACCAGAC 59.048 57.895 8.66 4.67 0.00 3.51
19 20 1.228245 TCCTGCAGCAAACCAGACC 60.228 57.895 8.66 0.00 0.00 3.85
20 21 1.529010 CCTGCAGCAAACCAGACCA 60.529 57.895 8.66 0.00 0.00 4.02
21 22 1.521450 CCTGCAGCAAACCAGACCAG 61.521 60.000 8.66 0.00 0.00 4.00
22 23 1.521450 CTGCAGCAAACCAGACCAGG 61.521 60.000 0.00 0.00 0.00 4.45
23 24 2.270986 GCAGCAAACCAGACCAGGG 61.271 63.158 0.00 0.00 0.00 4.45
24 25 1.151450 CAGCAAACCAGACCAGGGT 59.849 57.895 0.00 0.00 41.41 4.34
28 29 3.981313 AACCAGACCAGGGTTCGT 58.019 55.556 0.00 0.00 45.26 3.85
29 30 1.450211 AACCAGACCAGGGTTCGTG 59.550 57.895 0.00 0.00 45.26 4.35
30 31 2.358737 CCAGACCAGGGTTCGTGC 60.359 66.667 0.00 0.00 0.00 5.34
31 32 2.425592 CAGACCAGGGTTCGTGCA 59.574 61.111 0.00 0.00 0.00 4.57
32 33 1.227823 CAGACCAGGGTTCGTGCAA 60.228 57.895 0.00 0.00 0.00 4.08
33 34 0.817634 CAGACCAGGGTTCGTGCAAA 60.818 55.000 0.00 0.00 0.00 3.68
34 35 0.106918 AGACCAGGGTTCGTGCAAAA 60.107 50.000 0.00 0.00 0.00 2.44
35 36 0.741915 GACCAGGGTTCGTGCAAAAA 59.258 50.000 0.00 0.00 0.00 1.94
55 56 2.449137 AAAATCAGGATCCAGCCAGG 57.551 50.000 15.82 0.00 39.47 4.45
56 57 0.554792 AAATCAGGATCCAGCCAGGG 59.445 55.000 15.82 0.00 38.24 4.45
57 58 0.625683 AATCAGGATCCAGCCAGGGT 60.626 55.000 15.82 0.00 38.24 4.34
58 59 1.351080 ATCAGGATCCAGCCAGGGTG 61.351 60.000 15.82 12.14 38.24 4.61
59 60 1.997311 CAGGATCCAGCCAGGGTGA 60.997 63.158 20.97 6.73 38.24 4.02
60 61 1.229951 AGGATCCAGCCAGGGTGAA 60.230 57.895 20.97 0.00 38.24 3.18
61 62 1.077429 GGATCCAGCCAGGGTGAAC 60.077 63.158 20.97 10.18 38.24 3.18
62 63 1.685224 GATCCAGCCAGGGTGAACA 59.315 57.895 20.97 3.81 38.24 3.18
63 64 0.678048 GATCCAGCCAGGGTGAACAC 60.678 60.000 20.97 4.94 38.24 3.32
64 65 1.136329 ATCCAGCCAGGGTGAACACT 61.136 55.000 20.97 0.00 38.24 3.55
65 66 0.472925 TCCAGCCAGGGTGAACACTA 60.473 55.000 20.97 0.00 38.24 2.74
66 67 0.036010 CCAGCCAGGGTGAACACTAG 60.036 60.000 20.97 0.00 32.22 2.57
67 68 0.976641 CAGCCAGGGTGAACACTAGA 59.023 55.000 13.97 0.00 32.22 2.43
68 69 1.347707 CAGCCAGGGTGAACACTAGAA 59.652 52.381 13.97 0.00 32.22 2.10
69 70 1.348036 AGCCAGGGTGAACACTAGAAC 59.652 52.381 0.00 0.00 0.00 3.01
70 71 1.348036 GCCAGGGTGAACACTAGAACT 59.652 52.381 0.00 0.00 0.00 3.01
71 72 2.613223 GCCAGGGTGAACACTAGAACTC 60.613 54.545 0.00 0.00 0.00 3.01
72 73 2.900546 CCAGGGTGAACACTAGAACTCT 59.099 50.000 0.00 0.00 0.00 3.24
73 74 3.306364 CCAGGGTGAACACTAGAACTCTG 60.306 52.174 0.00 2.29 40.21 3.35
74 75 2.900546 AGGGTGAACACTAGAACTCTGG 59.099 50.000 0.00 0.00 0.00 3.86
75 76 2.633481 GGGTGAACACTAGAACTCTGGT 59.367 50.000 0.00 0.00 38.25 4.00
76 77 3.830755 GGGTGAACACTAGAACTCTGGTA 59.169 47.826 0.00 0.00 35.39 3.25
77 78 4.321824 GGGTGAACACTAGAACTCTGGTAC 60.322 50.000 0.00 0.00 35.39 3.34
78 79 4.280174 GGTGAACACTAGAACTCTGGTACA 59.720 45.833 0.00 0.00 35.39 2.90
96 97 7.364149 TGGTACAGTAGTAGTTTCAAAAGGA 57.636 36.000 0.00 0.00 0.00 3.36
97 98 7.794041 TGGTACAGTAGTAGTTTCAAAAGGAA 58.206 34.615 0.00 0.00 0.00 3.36
98 99 7.712205 TGGTACAGTAGTAGTTTCAAAAGGAAC 59.288 37.037 0.00 0.00 34.56 3.62
100 101 8.976471 GTACAGTAGTAGTTTCAAAAGGAACTC 58.024 37.037 0.00 0.00 38.49 3.01
101 102 7.793036 ACAGTAGTAGTTTCAAAAGGAACTCT 58.207 34.615 0.00 0.00 38.49 3.24
102 103 8.921205 ACAGTAGTAGTTTCAAAAGGAACTCTA 58.079 33.333 0.00 0.00 38.49 2.43
103 104 9.413048 CAGTAGTAGTTTCAAAAGGAACTCTAG 57.587 37.037 0.00 0.00 38.49 2.43
104 105 9.145442 AGTAGTAGTTTCAAAAGGAACTCTAGT 57.855 33.333 0.00 0.00 38.49 2.57
107 108 9.145442 AGTAGTTTCAAAAGGAACTCTAGTAGT 57.855 33.333 0.00 0.00 38.49 2.73
110 111 9.145442 AGTTTCAAAAGGAACTCTAGTAGTAGT 57.855 33.333 4.51 0.00 38.49 2.73
139 140 8.744008 ATAATAACGGAATGAGTACAGAATCG 57.256 34.615 0.00 0.00 0.00 3.34
140 141 4.451629 AACGGAATGAGTACAGAATCGT 57.548 40.909 0.00 0.00 0.00 3.73
141 142 3.770666 ACGGAATGAGTACAGAATCGTG 58.229 45.455 0.00 0.00 0.00 4.35
142 143 3.192844 ACGGAATGAGTACAGAATCGTGT 59.807 43.478 0.00 0.00 34.21 4.49
143 144 3.791887 CGGAATGAGTACAGAATCGTGTC 59.208 47.826 0.00 0.00 31.46 3.67
144 145 4.674362 CGGAATGAGTACAGAATCGTGTCA 60.674 45.833 0.00 0.00 31.46 3.58
145 146 4.800993 GGAATGAGTACAGAATCGTGTCAG 59.199 45.833 0.00 0.00 31.46 3.51
146 147 5.392767 AATGAGTACAGAATCGTGTCAGT 57.607 39.130 0.00 0.00 31.46 3.41
147 148 4.848562 TGAGTACAGAATCGTGTCAGTT 57.151 40.909 0.00 0.00 31.46 3.16
148 149 4.795268 TGAGTACAGAATCGTGTCAGTTC 58.205 43.478 0.00 0.00 31.46 3.01
149 150 4.277423 TGAGTACAGAATCGTGTCAGTTCA 59.723 41.667 0.00 0.00 31.46 3.18
150 151 4.547532 AGTACAGAATCGTGTCAGTTCAC 58.452 43.478 0.00 0.00 35.28 3.18
151 152 2.755650 ACAGAATCGTGTCAGTTCACC 58.244 47.619 0.00 0.00 35.18 4.02
152 153 1.721389 CAGAATCGTGTCAGTTCACCG 59.279 52.381 0.00 0.00 35.18 4.94
153 154 1.068474 GAATCGTGTCAGTTCACCGG 58.932 55.000 0.00 0.00 35.18 5.28
154 155 0.320421 AATCGTGTCAGTTCACCGGG 60.320 55.000 6.32 0.00 35.18 5.73
155 156 2.167398 ATCGTGTCAGTTCACCGGGG 62.167 60.000 6.32 0.00 35.18 5.73
156 157 2.032071 GTGTCAGTTCACCGGGGG 59.968 66.667 2.42 0.00 32.81 5.40
157 158 3.948719 TGTCAGTTCACCGGGGGC 61.949 66.667 2.42 0.00 0.00 5.80
158 159 3.948719 GTCAGTTCACCGGGGGCA 61.949 66.667 2.42 0.00 0.00 5.36
159 160 3.636231 TCAGTTCACCGGGGGCAG 61.636 66.667 2.42 0.00 0.00 4.85
160 161 3.953775 CAGTTCACCGGGGGCAGT 61.954 66.667 2.42 0.00 0.00 4.40
161 162 3.953775 AGTTCACCGGGGGCAGTG 61.954 66.667 2.42 0.00 35.24 3.66
162 163 4.265056 GTTCACCGGGGGCAGTGT 62.265 66.667 2.42 0.00 35.45 3.55
163 164 4.263572 TTCACCGGGGGCAGTGTG 62.264 66.667 2.42 0.00 35.45 3.82
167 168 4.704833 CCGGGGGCAGTGTGTCAG 62.705 72.222 0.00 0.00 0.00 3.51
168 169 3.941188 CGGGGGCAGTGTGTCAGT 61.941 66.667 0.00 0.00 0.00 3.41
169 170 2.032681 GGGGGCAGTGTGTCAGTC 59.967 66.667 0.00 0.00 0.00 3.51
170 171 2.818169 GGGGGCAGTGTGTCAGTCA 61.818 63.158 0.00 0.00 0.00 3.41
171 172 1.302033 GGGGCAGTGTGTCAGTCAG 60.302 63.158 0.00 0.00 0.00 3.51
172 173 1.447643 GGGCAGTGTGTCAGTCAGT 59.552 57.895 0.00 0.00 0.00 3.41
173 174 0.601311 GGGCAGTGTGTCAGTCAGTC 60.601 60.000 0.00 0.00 0.00 3.51
174 175 0.104855 GGCAGTGTGTCAGTCAGTCA 59.895 55.000 0.00 0.00 0.00 3.41
175 176 1.495878 GCAGTGTGTCAGTCAGTCAG 58.504 55.000 0.00 0.00 0.00 3.51
176 177 1.202463 GCAGTGTGTCAGTCAGTCAGT 60.202 52.381 0.00 0.00 0.00 3.41
177 178 2.467838 CAGTGTGTCAGTCAGTCAGTG 58.532 52.381 0.00 0.00 0.00 3.66
178 179 2.099756 CAGTGTGTCAGTCAGTCAGTGA 59.900 50.000 0.00 0.00 33.07 3.41
179 180 2.360483 AGTGTGTCAGTCAGTCAGTGAG 59.640 50.000 0.00 0.00 34.91 3.51
180 181 2.099921 GTGTGTCAGTCAGTCAGTGAGT 59.900 50.000 0.00 0.00 39.67 3.41
184 185 3.139810 AGTCAGTCAGTGAGTGGCT 57.860 52.632 26.07 26.07 44.21 4.75
187 188 2.746359 AGTCAGTGAGTGGCTGGC 59.254 61.111 0.00 0.00 40.68 4.85
188 189 2.359230 GTCAGTGAGTGGCTGGCC 60.359 66.667 4.43 4.43 32.86 5.36
189 190 2.848679 TCAGTGAGTGGCTGGCCA 60.849 61.111 10.55 10.55 45.02 5.36
201 202 4.722526 TGGCTGGCCAATAATACTACAT 57.277 40.909 12.27 0.00 44.12 2.29
202 203 4.651778 TGGCTGGCCAATAATACTACATC 58.348 43.478 12.27 0.00 44.12 3.06
203 204 4.350816 TGGCTGGCCAATAATACTACATCT 59.649 41.667 12.27 0.00 44.12 2.90
204 205 5.546110 TGGCTGGCCAATAATACTACATCTA 59.454 40.000 12.27 0.00 44.12 1.98
205 206 5.875359 GGCTGGCCAATAATACTACATCTAC 59.125 44.000 7.01 0.00 35.81 2.59
206 207 5.577164 GCTGGCCAATAATACTACATCTACG 59.423 44.000 7.01 0.00 0.00 3.51
207 208 6.659745 TGGCCAATAATACTACATCTACGT 57.340 37.500 0.61 0.00 0.00 3.57
208 209 7.576287 GCTGGCCAATAATACTACATCTACGTA 60.576 40.741 7.01 0.00 0.00 3.57
209 210 8.180706 TGGCCAATAATACTACATCTACGTAA 57.819 34.615 0.61 0.00 0.00 3.18
210 211 8.084073 TGGCCAATAATACTACATCTACGTAAC 58.916 37.037 0.61 0.00 0.00 2.50
211 212 7.543520 GGCCAATAATACTACATCTACGTAACC 59.456 40.741 0.00 0.00 0.00 2.85
212 213 8.302438 GCCAATAATACTACATCTACGTAACCT 58.698 37.037 0.00 0.00 0.00 3.50
213 214 9.622004 CCAATAATACTACATCTACGTAACCTG 57.378 37.037 0.00 0.00 0.00 4.00
214 215 9.125906 CAATAATACTACATCTACGTAACCTGC 57.874 37.037 0.00 0.00 0.00 4.85
215 216 6.956202 AATACTACATCTACGTAACCTGCT 57.044 37.500 0.00 0.00 0.00 4.24
216 217 9.730705 ATAATACTACATCTACGTAACCTGCTA 57.269 33.333 0.00 0.00 0.00 3.49
217 218 5.747951 ACTACATCTACGTAACCTGCTAC 57.252 43.478 0.00 0.00 0.00 3.58
224 225 0.921347 CGTAACCTGCTACGTGATGC 59.079 55.000 0.00 0.06 39.81 3.91
225 226 1.469251 CGTAACCTGCTACGTGATGCT 60.469 52.381 0.00 0.00 39.81 3.79
226 227 2.223409 CGTAACCTGCTACGTGATGCTA 60.223 50.000 0.00 0.00 39.81 3.49
227 228 2.295253 AACCTGCTACGTGATGCTAC 57.705 50.000 0.00 0.00 0.00 3.58
237 238 2.190981 CGTGATGCTACGTAACCTTCC 58.809 52.381 0.00 0.00 39.13 3.46
238 239 2.416296 CGTGATGCTACGTAACCTTCCA 60.416 50.000 0.00 0.00 39.13 3.53
239 240 3.737047 CGTGATGCTACGTAACCTTCCAT 60.737 47.826 0.00 0.00 39.13 3.41
240 241 3.802685 GTGATGCTACGTAACCTTCCATC 59.197 47.826 0.00 3.51 0.00 3.51
241 242 3.704566 TGATGCTACGTAACCTTCCATCT 59.295 43.478 0.00 0.00 31.44 2.90
242 243 4.891168 TGATGCTACGTAACCTTCCATCTA 59.109 41.667 0.00 0.00 31.44 1.98
243 244 5.361571 TGATGCTACGTAACCTTCCATCTAA 59.638 40.000 0.00 0.00 31.44 2.10
244 245 5.864418 TGCTACGTAACCTTCCATCTAAT 57.136 39.130 0.00 0.00 0.00 1.73
245 246 6.229936 TGCTACGTAACCTTCCATCTAATT 57.770 37.500 0.00 0.00 0.00 1.40
246 247 6.278363 TGCTACGTAACCTTCCATCTAATTC 58.722 40.000 0.00 0.00 0.00 2.17
247 248 6.097839 TGCTACGTAACCTTCCATCTAATTCT 59.902 38.462 0.00 0.00 0.00 2.40
248 249 6.641723 GCTACGTAACCTTCCATCTAATTCTC 59.358 42.308 0.00 0.00 0.00 2.87
249 250 6.793505 ACGTAACCTTCCATCTAATTCTCT 57.206 37.500 0.00 0.00 0.00 3.10
250 251 6.807789 ACGTAACCTTCCATCTAATTCTCTC 58.192 40.000 0.00 0.00 0.00 3.20
251 252 6.183360 ACGTAACCTTCCATCTAATTCTCTCC 60.183 42.308 0.00 0.00 0.00 3.71
252 253 6.041069 CGTAACCTTCCATCTAATTCTCTCCT 59.959 42.308 0.00 0.00 0.00 3.69
253 254 6.493189 AACCTTCCATCTAATTCTCTCCTC 57.507 41.667 0.00 0.00 0.00 3.71
254 255 4.904853 ACCTTCCATCTAATTCTCTCCTCC 59.095 45.833 0.00 0.00 0.00 4.30
255 256 4.285775 CCTTCCATCTAATTCTCTCCTCCC 59.714 50.000 0.00 0.00 0.00 4.30
256 257 3.863086 TCCATCTAATTCTCTCCTCCCC 58.137 50.000 0.00 0.00 0.00 4.81
257 258 2.909662 CCATCTAATTCTCTCCTCCCCC 59.090 54.545 0.00 0.00 0.00 5.40
273 274 1.488390 CCCCCTGATTTTCATGGGTG 58.512 55.000 14.39 5.10 46.93 4.61
274 275 0.826062 CCCCTGATTTTCATGGGTGC 59.174 55.000 9.09 0.00 44.38 5.01
275 276 0.457035 CCCTGATTTTCATGGGTGCG 59.543 55.000 0.00 0.00 33.17 5.34
276 277 0.457035 CCTGATTTTCATGGGTGCGG 59.543 55.000 0.00 0.00 0.00 5.69
277 278 0.457035 CTGATTTTCATGGGTGCGGG 59.543 55.000 0.00 0.00 0.00 6.13
278 279 0.969917 TGATTTTCATGGGTGCGGGG 60.970 55.000 0.00 0.00 0.00 5.73
279 280 2.296814 GATTTTCATGGGTGCGGGGC 62.297 60.000 0.00 0.00 0.00 5.80
296 297 3.711782 CCCCCTCCCTCCCCTTCT 61.712 72.222 0.00 0.00 0.00 2.85
297 298 2.461637 CCCCTCCCTCCCCTTCTT 59.538 66.667 0.00 0.00 0.00 2.52
298 299 1.230314 CCCCTCCCTCCCCTTCTTT 60.230 63.158 0.00 0.00 0.00 2.52
299 300 1.282653 CCCCTCCCTCCCCTTCTTTC 61.283 65.000 0.00 0.00 0.00 2.62
300 301 0.550147 CCCTCCCTCCCCTTCTTTCA 60.550 60.000 0.00 0.00 0.00 2.69
301 302 1.372501 CCTCCCTCCCCTTCTTTCAA 58.627 55.000 0.00 0.00 0.00 2.69
302 303 1.925959 CCTCCCTCCCCTTCTTTCAAT 59.074 52.381 0.00 0.00 0.00 2.57
303 304 2.313041 CCTCCCTCCCCTTCTTTCAATT 59.687 50.000 0.00 0.00 0.00 2.32
304 305 3.527665 CCTCCCTCCCCTTCTTTCAATTA 59.472 47.826 0.00 0.00 0.00 1.40
305 306 4.385754 CCTCCCTCCCCTTCTTTCAATTAG 60.386 50.000 0.00 0.00 0.00 1.73
306 307 4.444611 TCCCTCCCCTTCTTTCAATTAGA 58.555 43.478 0.00 0.00 0.00 2.10
307 308 4.855599 TCCCTCCCCTTCTTTCAATTAGAA 59.144 41.667 0.00 0.00 0.00 2.10
308 309 5.496168 TCCCTCCCCTTCTTTCAATTAGAAT 59.504 40.000 0.00 0.00 35.83 2.40
309 310 6.010739 TCCCTCCCCTTCTTTCAATTAGAATT 60.011 38.462 0.00 0.00 35.83 2.17
310 311 6.669591 CCCTCCCCTTCTTTCAATTAGAATTT 59.330 38.462 0.00 0.00 35.83 1.82
311 312 7.364144 CCCTCCCCTTCTTTCAATTAGAATTTG 60.364 40.741 0.00 0.00 35.83 2.32
312 313 6.935167 TCCCCTTCTTTCAATTAGAATTTGC 58.065 36.000 0.00 0.00 35.83 3.68
313 314 6.070824 TCCCCTTCTTTCAATTAGAATTTGCC 60.071 38.462 0.00 0.00 35.83 4.52
314 315 6.295802 CCCCTTCTTTCAATTAGAATTTGCCA 60.296 38.462 0.00 0.00 35.83 4.92
315 316 7.160726 CCCTTCTTTCAATTAGAATTTGCCAA 58.839 34.615 0.00 0.00 35.83 4.52
316 317 7.661027 CCCTTCTTTCAATTAGAATTTGCCAAA 59.339 33.333 0.00 0.00 35.83 3.28
317 318 9.223099 CCTTCTTTCAATTAGAATTTGCCAAAT 57.777 29.630 0.00 0.00 35.83 2.32
319 320 9.775854 TTCTTTCAATTAGAATTTGCCAAATCA 57.224 25.926 2.61 0.00 35.83 2.57
320 321 9.426837 TCTTTCAATTAGAATTTGCCAAATCAG 57.573 29.630 2.61 0.00 35.83 2.90
321 322 7.599630 TTCAATTAGAATTTGCCAAATCAGC 57.400 32.000 2.61 0.00 0.00 4.26
322 323 6.699366 TCAATTAGAATTTGCCAAATCAGCA 58.301 32.000 2.61 0.00 38.81 4.41
323 324 6.814644 TCAATTAGAATTTGCCAAATCAGCAG 59.185 34.615 2.61 0.00 42.17 4.24
324 325 2.968675 AGAATTTGCCAAATCAGCAGC 58.031 42.857 2.61 0.00 42.17 5.25
325 326 2.300723 AGAATTTGCCAAATCAGCAGCA 59.699 40.909 2.61 0.00 42.17 4.41
326 327 3.055385 AGAATTTGCCAAATCAGCAGCAT 60.055 39.130 2.61 0.00 42.17 3.79
327 328 2.843401 TTTGCCAAATCAGCAGCATT 57.157 40.000 0.00 0.00 42.17 3.56
328 329 3.957591 TTTGCCAAATCAGCAGCATTA 57.042 38.095 0.00 0.00 42.17 1.90
329 330 2.945447 TGCCAAATCAGCAGCATTAC 57.055 45.000 0.00 0.00 34.69 1.89
330 331 1.132834 TGCCAAATCAGCAGCATTACG 59.867 47.619 0.00 0.00 34.69 3.18
331 332 1.133025 GCCAAATCAGCAGCATTACGT 59.867 47.619 0.00 0.00 0.00 3.57
332 333 2.354510 GCCAAATCAGCAGCATTACGTA 59.645 45.455 0.00 0.00 0.00 3.57
333 334 3.181501 GCCAAATCAGCAGCATTACGTAA 60.182 43.478 11.02 11.02 0.00 3.18
334 335 4.674101 GCCAAATCAGCAGCATTACGTAAA 60.674 41.667 12.81 0.00 0.00 2.01
335 336 4.793216 CCAAATCAGCAGCATTACGTAAAC 59.207 41.667 12.81 7.81 0.00 2.01
336 337 4.616181 AATCAGCAGCATTACGTAAACC 57.384 40.909 12.81 6.30 0.00 3.27
337 338 3.328382 TCAGCAGCATTACGTAAACCT 57.672 42.857 12.81 8.55 0.00 3.50
338 339 3.670625 TCAGCAGCATTACGTAAACCTT 58.329 40.909 12.81 0.00 0.00 3.50
339 340 4.823157 TCAGCAGCATTACGTAAACCTTA 58.177 39.130 12.81 0.00 0.00 2.69
340 341 4.628333 TCAGCAGCATTACGTAAACCTTAC 59.372 41.667 12.81 6.26 0.00 2.34
341 342 3.615496 AGCAGCATTACGTAAACCTTACG 59.385 43.478 12.81 15.38 45.44 3.18
350 351 3.982437 CGTAAACCTTACGTAGCTTTGC 58.018 45.455 10.10 0.00 36.31 3.68
351 352 3.480825 CGTAAACCTTACGTAGCTTTGCG 60.481 47.826 10.10 13.49 33.41 4.85
352 353 2.159327 AACCTTACGTAGCTTTGCGT 57.841 45.000 13.54 13.54 44.02 5.24
353 354 1.425412 ACCTTACGTAGCTTTGCGTG 58.575 50.000 17.04 6.66 41.68 5.34
354 355 0.719465 CCTTACGTAGCTTTGCGTGG 59.281 55.000 17.04 9.41 41.68 4.94
355 356 1.670674 CCTTACGTAGCTTTGCGTGGA 60.671 52.381 17.04 7.84 41.68 4.02
356 357 2.268298 CTTACGTAGCTTTGCGTGGAT 58.732 47.619 17.04 0.00 41.68 3.41
357 358 1.635844 TACGTAGCTTTGCGTGGATG 58.364 50.000 17.04 0.00 41.68 3.51
358 359 0.320421 ACGTAGCTTTGCGTGGATGT 60.320 50.000 9.32 0.00 40.03 3.06
359 360 1.067425 ACGTAGCTTTGCGTGGATGTA 60.067 47.619 9.32 0.00 40.03 2.29
360 361 1.588404 CGTAGCTTTGCGTGGATGTAG 59.412 52.381 0.00 0.00 0.00 2.74
361 362 1.327764 GTAGCTTTGCGTGGATGTAGC 59.672 52.381 0.00 0.00 0.00 3.58
362 363 0.321564 AGCTTTGCGTGGATGTAGCA 60.322 50.000 0.00 0.00 39.33 3.49
363 364 0.734889 GCTTTGCGTGGATGTAGCAT 59.265 50.000 0.00 0.00 40.83 3.79
364 365 1.133025 GCTTTGCGTGGATGTAGCATT 59.867 47.619 0.00 0.00 40.83 3.56
365 366 2.789208 CTTTGCGTGGATGTAGCATTG 58.211 47.619 0.00 0.00 40.83 2.82
366 367 0.451383 TTGCGTGGATGTAGCATTGC 59.549 50.000 0.00 0.00 40.83 3.56
367 368 0.392863 TGCGTGGATGTAGCATTGCT 60.393 50.000 16.63 16.63 43.41 3.91
368 369 0.305922 GCGTGGATGTAGCATTGCTC 59.694 55.000 15.81 7.72 40.44 4.26
466 474 3.010767 CCGACGTGGTGTGTTGTG 58.989 61.111 0.00 0.00 0.00 3.33
467 475 2.530497 CCGACGTGGTGTGTTGTGG 61.530 63.158 0.00 0.00 0.00 4.17
468 476 1.812093 CGACGTGGTGTGTTGTGGT 60.812 57.895 0.00 0.00 0.00 4.16
579 587 0.666577 GGAGGTCTGTCCAACGAACG 60.667 60.000 0.00 0.00 39.02 3.95
589 597 2.280321 AACGAACGAACCCACCCG 60.280 61.111 0.14 0.00 0.00 5.28
623 656 1.971962 CTGCTCGCGTCAACATTTTTC 59.028 47.619 5.77 0.00 0.00 2.29
642 675 0.953471 CAAAACCGTCGCCATCCTCA 60.953 55.000 0.00 0.00 0.00 3.86
679 715 1.009389 GTCCGTTCGCTCACCTTCTG 61.009 60.000 0.00 0.00 0.00 3.02
690 726 0.111253 CACCTTCTGCTCCAAACCCT 59.889 55.000 0.00 0.00 0.00 4.34
692 728 0.674895 CCTTCTGCTCCAAACCCTCG 60.675 60.000 0.00 0.00 0.00 4.63
717 753 3.299977 GCCCCCACACCCGTTTTC 61.300 66.667 0.00 0.00 0.00 2.29
733 769 3.178046 GTTTTCTTCTCCTCCTCCTCCT 58.822 50.000 0.00 0.00 0.00 3.69
757 793 0.470080 CCCTCTTATCCTCTCCGCCA 60.470 60.000 0.00 0.00 0.00 5.69
758 794 0.676736 CCTCTTATCCTCTCCGCCAC 59.323 60.000 0.00 0.00 0.00 5.01
759 795 0.676736 CTCTTATCCTCTCCGCCACC 59.323 60.000 0.00 0.00 0.00 4.61
760 796 1.107538 TCTTATCCTCTCCGCCACCG 61.108 60.000 0.00 0.00 0.00 4.94
761 797 2.701163 CTTATCCTCTCCGCCACCGC 62.701 65.000 0.00 0.00 0.00 5.68
854 900 4.158764 AGCGCCTGAATATATACTGACTCC 59.841 45.833 2.29 0.00 0.00 3.85
859 905 6.256819 CCTGAATATATACTGACTCCCTCCA 58.743 44.000 0.00 0.00 0.00 3.86
903 950 4.200283 GCGAGGACGAGGAGCAGG 62.200 72.222 0.00 0.00 42.66 4.85
917 976 1.076923 GCAGGTACCGAGGAGAGGA 60.077 63.158 6.18 0.00 0.00 3.71
918 977 1.104577 GCAGGTACCGAGGAGAGGAG 61.105 65.000 6.18 0.00 0.00 3.69
919 978 0.547075 CAGGTACCGAGGAGAGGAGA 59.453 60.000 6.18 0.00 0.00 3.71
920 979 1.144093 CAGGTACCGAGGAGAGGAGAT 59.856 57.143 6.18 0.00 0.00 2.75
921 980 2.372504 CAGGTACCGAGGAGAGGAGATA 59.627 54.545 6.18 0.00 0.00 1.98
924 983 0.535553 ACCGAGGAGAGGAGATACGC 60.536 60.000 0.00 0.00 0.00 4.42
925 984 1.570347 CCGAGGAGAGGAGATACGCG 61.570 65.000 3.53 3.53 0.00 6.01
927 986 0.887387 GAGGAGAGGAGATACGCGCT 60.887 60.000 5.73 0.00 0.00 5.92
928 987 1.169661 AGGAGAGGAGATACGCGCTG 61.170 60.000 5.73 1.02 0.00 5.18
929 988 1.371145 GAGAGGAGATACGCGCTGC 60.371 63.158 5.73 0.00 0.00 5.25
930 989 2.355244 GAGGAGATACGCGCTGCC 60.355 66.667 5.73 0.20 0.00 4.85
932 991 1.516365 GAGGAGATACGCGCTGCCTA 61.516 60.000 5.73 0.00 0.00 3.93
933 992 1.371881 GGAGATACGCGCTGCCTAC 60.372 63.158 5.73 0.00 0.00 3.18
934 993 1.359117 GAGATACGCGCTGCCTACA 59.641 57.895 5.73 0.00 0.00 2.74
935 994 0.248907 GAGATACGCGCTGCCTACAA 60.249 55.000 5.73 0.00 0.00 2.41
936 995 0.249073 AGATACGCGCTGCCTACAAG 60.249 55.000 5.73 0.00 0.00 3.16
937 996 1.822250 GATACGCGCTGCCTACAAGC 61.822 60.000 5.73 0.00 0.00 4.01
972 1031 1.012841 GCGATTCTTGCTCTTGGGAG 58.987 55.000 0.00 0.00 42.18 4.30
980 1039 1.892819 TGCTCTTGGGAGAGGAAGCG 61.893 60.000 5.66 0.00 45.90 4.68
981 1040 1.153469 CTCTTGGGAGAGGAAGCGC 60.153 63.158 0.00 0.00 44.69 5.92
982 1041 2.510238 CTTGGGAGAGGAAGCGCG 60.510 66.667 0.00 0.00 0.00 6.86
987 1046 4.214327 GAGAGGAAGCGCGGAGGG 62.214 72.222 8.83 0.00 46.11 4.30
998 1057 4.016706 CGGAGGGCGGTGGTTTCT 62.017 66.667 0.00 0.00 0.00 2.52
1011 1070 0.321653 GGTTTCTCATGGCGGTGACT 60.322 55.000 0.00 0.00 0.00 3.41
1113 1172 2.659016 CTCTGCGCCAAGAGGTCA 59.341 61.111 15.22 0.00 40.11 4.02
2014 2580 6.183360 CCACAAAGAGAAGAAAACAAGTTTGC 60.183 38.462 0.00 0.00 32.36 3.68
2015 2581 5.869344 ACAAAGAGAAGAAAACAAGTTTGCC 59.131 36.000 0.00 0.00 32.36 4.52
2191 2757 3.654201 TGCAACTGTAAGCAGCGG 58.346 55.556 4.02 0.00 46.30 5.52
2318 2887 2.825836 CCCCTCAGAATGCGGCAC 60.826 66.667 4.03 0.00 40.40 5.01
2328 2897 0.537143 AATGCGGCACCTGTCAAAGA 60.537 50.000 4.03 0.00 0.00 2.52
2422 2998 4.142838 ACATGTATGACTGCACATTGTTCG 60.143 41.667 0.00 0.00 33.12 3.95
2469 3048 0.329261 CACCAGTCCACCATCACCAT 59.671 55.000 0.00 0.00 0.00 3.55
2519 3098 8.624776 CACTACTCCTGAAAGAAACAAGAAAAT 58.375 33.333 0.00 0.00 34.07 1.82
2520 3099 8.841300 ACTACTCCTGAAAGAAACAAGAAAATC 58.159 33.333 0.00 0.00 34.07 2.17
2539 3130 8.765517 AGAAAATCCAGGATTTCTTTTGCATAT 58.234 29.630 25.10 7.84 40.77 1.78
2582 3174 7.153217 TCGAAGGAAGAAAAAGAAACTGTTT 57.847 32.000 5.29 5.29 0.00 2.83
2638 3234 6.126710 TGGTCTAAAAGAAGTGGGTTGACTTA 60.127 38.462 0.00 0.00 36.27 2.24
2650 3246 4.947388 TGGGTTGACTTATAAGATGGTTGC 59.053 41.667 19.38 2.83 0.00 4.17
2667 3263 3.550233 GGTTGCGTTCTCCCTTTTCTTTC 60.550 47.826 0.00 0.00 0.00 2.62
2668 3264 2.227194 TGCGTTCTCCCTTTTCTTTCC 58.773 47.619 0.00 0.00 0.00 3.13
2671 3267 3.656559 CGTTCTCCCTTTTCTTTCCGTA 58.343 45.455 0.00 0.00 0.00 4.02
2678 3274 8.873186 TCTCCCTTTTCTTTCCGTATTTTAAT 57.127 30.769 0.00 0.00 0.00 1.40
2679 3275 9.304335 TCTCCCTTTTCTTTCCGTATTTTAATT 57.696 29.630 0.00 0.00 0.00 1.40
2724 3321 4.460683 GCATGGTGACGCCGGGTA 62.461 66.667 2.18 0.00 41.21 3.69
2753 3350 1.473258 ACAAGCAACAAGGACAGCAA 58.527 45.000 0.00 0.00 0.00 3.91
2792 3390 3.491342 TGGAGATAGCTGAGCTAATCGT 58.509 45.455 19.13 1.01 44.62 3.73
2803 3401 3.775202 GAGCTAATCGTTTGCTCTCTCA 58.225 45.455 18.83 0.00 46.69 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.518903 GGTCTGGTTTGCTGCAGGAC 61.519 60.000 17.12 11.82 0.00 3.85
1 2 1.228245 GGTCTGGTTTGCTGCAGGA 60.228 57.895 17.12 10.66 0.00 3.86
2 3 1.521450 CTGGTCTGGTTTGCTGCAGG 61.521 60.000 17.12 0.00 0.00 4.85
3 4 1.521450 CCTGGTCTGGTTTGCTGCAG 61.521 60.000 10.11 10.11 0.00 4.41
4 5 1.529010 CCTGGTCTGGTTTGCTGCA 60.529 57.895 0.00 0.00 0.00 4.41
5 6 2.270986 CCCTGGTCTGGTTTGCTGC 61.271 63.158 0.00 0.00 0.00 5.25
6 7 0.468029 AACCCTGGTCTGGTTTGCTG 60.468 55.000 0.00 0.00 43.52 4.41
7 8 0.178990 GAACCCTGGTCTGGTTTGCT 60.179 55.000 0.00 0.00 45.93 3.91
8 9 1.515521 CGAACCCTGGTCTGGTTTGC 61.516 60.000 0.00 0.00 45.93 3.68
9 10 0.179029 ACGAACCCTGGTCTGGTTTG 60.179 55.000 7.68 7.68 45.93 2.93
10 11 0.179029 CACGAACCCTGGTCTGGTTT 60.179 55.000 0.00 0.00 45.93 3.27
12 13 3.148084 CACGAACCCTGGTCTGGT 58.852 61.111 0.00 0.00 37.85 4.00
13 14 2.358737 GCACGAACCCTGGTCTGG 60.359 66.667 0.00 0.00 0.00 3.86
14 15 0.817634 TTTGCACGAACCCTGGTCTG 60.818 55.000 0.00 0.00 0.00 3.51
15 16 0.106918 TTTTGCACGAACCCTGGTCT 60.107 50.000 0.00 0.00 0.00 3.85
16 17 0.741915 TTTTTGCACGAACCCTGGTC 59.258 50.000 0.00 0.00 0.00 4.02
17 18 2.889200 TTTTTGCACGAACCCTGGT 58.111 47.368 0.00 0.00 0.00 4.00
35 36 2.625087 CCCTGGCTGGATCCTGATTTTT 60.625 50.000 21.91 0.00 38.35 1.94
36 37 1.063417 CCCTGGCTGGATCCTGATTTT 60.063 52.381 21.91 0.00 38.35 1.82
37 38 0.554792 CCCTGGCTGGATCCTGATTT 59.445 55.000 21.91 0.00 38.35 2.17
38 39 0.625683 ACCCTGGCTGGATCCTGATT 60.626 55.000 21.91 0.00 38.35 2.57
39 40 1.005289 ACCCTGGCTGGATCCTGAT 59.995 57.895 21.91 0.00 38.35 2.90
40 41 1.997311 CACCCTGGCTGGATCCTGA 60.997 63.158 21.91 1.46 38.35 3.86
41 42 1.565390 TTCACCCTGGCTGGATCCTG 61.565 60.000 14.23 14.14 38.35 3.86
42 43 1.229951 TTCACCCTGGCTGGATCCT 60.230 57.895 14.23 0.00 38.35 3.24
43 44 1.077429 GTTCACCCTGGCTGGATCC 60.077 63.158 12.58 4.20 38.35 3.36
44 45 0.678048 GTGTTCACCCTGGCTGGATC 60.678 60.000 12.58 0.00 38.35 3.36
45 46 1.136329 AGTGTTCACCCTGGCTGGAT 61.136 55.000 12.58 0.00 38.35 3.41
46 47 0.472925 TAGTGTTCACCCTGGCTGGA 60.473 55.000 12.58 0.00 38.35 3.86
47 48 0.036010 CTAGTGTTCACCCTGGCTGG 60.036 60.000 2.96 2.96 0.00 4.85
48 49 0.976641 TCTAGTGTTCACCCTGGCTG 59.023 55.000 0.00 0.00 0.00 4.85
49 50 1.348036 GTTCTAGTGTTCACCCTGGCT 59.652 52.381 0.00 0.00 0.00 4.75
50 51 1.348036 AGTTCTAGTGTTCACCCTGGC 59.652 52.381 0.00 0.00 0.00 4.85
51 52 2.900546 AGAGTTCTAGTGTTCACCCTGG 59.099 50.000 0.00 0.00 0.00 4.45
52 53 3.306364 CCAGAGTTCTAGTGTTCACCCTG 60.306 52.174 0.00 0.00 0.00 4.45
53 54 2.900546 CCAGAGTTCTAGTGTTCACCCT 59.099 50.000 0.00 0.00 0.00 4.34
54 55 2.633481 ACCAGAGTTCTAGTGTTCACCC 59.367 50.000 0.00 0.00 0.00 4.61
55 56 4.280174 TGTACCAGAGTTCTAGTGTTCACC 59.720 45.833 0.00 0.00 0.00 4.02
56 57 5.009811 ACTGTACCAGAGTTCTAGTGTTCAC 59.990 44.000 0.00 0.00 35.18 3.18
57 58 5.138276 ACTGTACCAGAGTTCTAGTGTTCA 58.862 41.667 0.00 0.00 35.18 3.18
58 59 5.708877 ACTGTACCAGAGTTCTAGTGTTC 57.291 43.478 0.00 0.00 35.18 3.18
59 60 6.305411 ACTACTGTACCAGAGTTCTAGTGTT 58.695 40.000 0.00 0.00 35.18 3.32
60 61 5.878627 ACTACTGTACCAGAGTTCTAGTGT 58.121 41.667 0.00 0.00 35.18 3.55
61 62 7.104939 ACTACTACTGTACCAGAGTTCTAGTG 58.895 42.308 0.00 0.00 35.18 2.74
62 63 7.256494 ACTACTACTGTACCAGAGTTCTAGT 57.744 40.000 0.00 0.00 35.18 2.57
63 64 8.564509 AAACTACTACTGTACCAGAGTTCTAG 57.435 38.462 0.00 0.00 35.18 2.43
64 65 8.159447 TGAAACTACTACTGTACCAGAGTTCTA 58.841 37.037 0.00 0.00 35.18 2.10
65 66 7.002879 TGAAACTACTACTGTACCAGAGTTCT 58.997 38.462 0.00 0.00 35.18 3.01
66 67 7.211966 TGAAACTACTACTGTACCAGAGTTC 57.788 40.000 0.00 0.00 35.18 3.01
67 68 7.592885 TTGAAACTACTACTGTACCAGAGTT 57.407 36.000 0.00 0.00 35.18 3.01
68 69 7.592885 TTTGAAACTACTACTGTACCAGAGT 57.407 36.000 0.00 0.90 35.18 3.24
69 70 7.599245 CCTTTTGAAACTACTACTGTACCAGAG 59.401 40.741 0.00 0.00 35.18 3.35
70 71 7.288389 TCCTTTTGAAACTACTACTGTACCAGA 59.712 37.037 0.00 0.00 35.18 3.86
71 72 7.439381 TCCTTTTGAAACTACTACTGTACCAG 58.561 38.462 0.00 0.00 37.52 4.00
72 73 7.364149 TCCTTTTGAAACTACTACTGTACCA 57.636 36.000 0.00 0.00 0.00 3.25
73 74 7.930325 AGTTCCTTTTGAAACTACTACTGTACC 59.070 37.037 0.00 0.00 33.94 3.34
74 75 8.883954 AGTTCCTTTTGAAACTACTACTGTAC 57.116 34.615 0.00 0.00 33.94 2.90
75 76 8.921205 AGAGTTCCTTTTGAAACTACTACTGTA 58.079 33.333 0.00 0.00 33.94 2.74
76 77 7.793036 AGAGTTCCTTTTGAAACTACTACTGT 58.207 34.615 0.00 0.00 33.94 3.55
77 78 9.413048 CTAGAGTTCCTTTTGAAACTACTACTG 57.587 37.037 0.00 0.00 33.94 2.74
78 79 9.145442 ACTAGAGTTCCTTTTGAAACTACTACT 57.855 33.333 0.00 0.00 33.94 2.57
81 82 9.145442 ACTACTAGAGTTCCTTTTGAAACTACT 57.855 33.333 0.00 0.00 33.13 2.57
84 85 9.145442 ACTACTACTAGAGTTCCTTTTGAAACT 57.855 33.333 0.00 0.00 39.81 2.66
113 114 9.836076 CGATTCTGTACTCATTCCGTTATTATA 57.164 33.333 0.00 0.00 0.00 0.98
114 115 8.358148 ACGATTCTGTACTCATTCCGTTATTAT 58.642 33.333 0.00 0.00 0.00 1.28
115 116 7.646526 CACGATTCTGTACTCATTCCGTTATTA 59.353 37.037 0.00 0.00 0.00 0.98
116 117 6.475727 CACGATTCTGTACTCATTCCGTTATT 59.524 38.462 0.00 0.00 0.00 1.40
117 118 5.977725 CACGATTCTGTACTCATTCCGTTAT 59.022 40.000 0.00 0.00 0.00 1.89
118 119 5.106038 ACACGATTCTGTACTCATTCCGTTA 60.106 40.000 0.00 0.00 0.00 3.18
119 120 4.174009 CACGATTCTGTACTCATTCCGTT 58.826 43.478 0.00 0.00 0.00 4.44
120 121 3.192844 ACACGATTCTGTACTCATTCCGT 59.807 43.478 0.00 0.00 0.00 4.69
121 122 3.770666 ACACGATTCTGTACTCATTCCG 58.229 45.455 0.00 0.00 0.00 4.30
122 123 4.744570 TGACACGATTCTGTACTCATTCC 58.255 43.478 0.00 0.00 0.00 3.01
123 124 5.403246 ACTGACACGATTCTGTACTCATTC 58.597 41.667 0.00 0.00 0.00 2.67
124 125 5.392767 ACTGACACGATTCTGTACTCATT 57.607 39.130 0.00 0.00 0.00 2.57
125 126 5.048013 TGAACTGACACGATTCTGTACTCAT 60.048 40.000 0.00 0.00 0.00 2.90
126 127 4.277423 TGAACTGACACGATTCTGTACTCA 59.723 41.667 0.00 0.00 0.00 3.41
127 128 4.617645 GTGAACTGACACGATTCTGTACTC 59.382 45.833 0.00 0.00 0.00 2.59
128 129 4.547532 GTGAACTGACACGATTCTGTACT 58.452 43.478 0.00 0.00 0.00 2.73
129 130 3.673809 GGTGAACTGACACGATTCTGTAC 59.326 47.826 0.00 0.00 41.12 2.90
130 131 3.610821 CGGTGAACTGACACGATTCTGTA 60.611 47.826 0.00 0.00 41.12 2.74
131 132 2.755650 GGTGAACTGACACGATTCTGT 58.244 47.619 0.00 0.00 41.12 3.41
132 133 1.721389 CGGTGAACTGACACGATTCTG 59.279 52.381 0.00 0.00 41.12 3.02
133 134 1.336887 CCGGTGAACTGACACGATTCT 60.337 52.381 0.00 0.00 41.12 2.40
134 135 1.068474 CCGGTGAACTGACACGATTC 58.932 55.000 0.00 0.00 41.12 2.52
135 136 0.320421 CCCGGTGAACTGACACGATT 60.320 55.000 0.00 0.00 41.12 3.34
136 137 1.292223 CCCGGTGAACTGACACGAT 59.708 57.895 0.00 0.00 41.12 3.73
137 138 2.732016 CCCGGTGAACTGACACGA 59.268 61.111 0.00 0.00 41.12 4.35
138 139 2.357034 CCCCGGTGAACTGACACG 60.357 66.667 0.00 0.00 41.12 4.49
139 140 2.032071 CCCCCGGTGAACTGACAC 59.968 66.667 0.00 0.00 39.70 3.67
140 141 3.948719 GCCCCCGGTGAACTGACA 61.949 66.667 0.00 0.00 0.00 3.58
141 142 3.901797 CTGCCCCCGGTGAACTGAC 62.902 68.421 0.00 0.00 0.00 3.51
142 143 3.636231 CTGCCCCCGGTGAACTGA 61.636 66.667 0.00 0.00 0.00 3.41
143 144 3.953775 ACTGCCCCCGGTGAACTG 61.954 66.667 0.00 0.00 0.00 3.16
150 151 4.704833 CTGACACACTGCCCCCGG 62.705 72.222 0.00 0.00 0.00 5.73
151 152 3.883744 GACTGACACACTGCCCCCG 62.884 68.421 0.00 0.00 0.00 5.73
152 153 2.032681 GACTGACACACTGCCCCC 59.967 66.667 0.00 0.00 0.00 5.40
153 154 1.302033 CTGACTGACACACTGCCCC 60.302 63.158 0.00 0.00 0.00 5.80
154 155 0.601311 GACTGACTGACACACTGCCC 60.601 60.000 0.00 0.00 0.00 5.36
155 156 0.104855 TGACTGACTGACACACTGCC 59.895 55.000 0.00 0.00 0.00 4.85
156 157 1.202463 ACTGACTGACTGACACACTGC 60.202 52.381 0.00 0.00 0.00 4.40
157 158 2.099756 TCACTGACTGACTGACACACTG 59.900 50.000 0.00 0.00 0.00 3.66
158 159 2.360483 CTCACTGACTGACTGACACACT 59.640 50.000 0.00 0.00 0.00 3.55
159 160 2.099921 ACTCACTGACTGACTGACACAC 59.900 50.000 0.00 0.00 0.00 3.82
160 161 2.099756 CACTCACTGACTGACTGACACA 59.900 50.000 0.00 0.00 0.00 3.72
161 162 2.544694 CCACTCACTGACTGACTGACAC 60.545 54.545 0.00 0.00 0.00 3.67
162 163 1.683385 CCACTCACTGACTGACTGACA 59.317 52.381 0.00 0.00 0.00 3.58
163 164 1.604185 GCCACTCACTGACTGACTGAC 60.604 57.143 0.00 0.00 0.00 3.51
164 165 0.676184 GCCACTCACTGACTGACTGA 59.324 55.000 0.00 0.00 0.00 3.41
165 166 0.678395 AGCCACTCACTGACTGACTG 59.322 55.000 0.00 0.00 0.00 3.51
166 167 0.678395 CAGCCACTCACTGACTGACT 59.322 55.000 0.00 0.00 37.32 3.41
167 168 0.320247 CCAGCCACTCACTGACTGAC 60.320 60.000 0.00 0.00 37.32 3.51
168 169 2.052779 CCAGCCACTCACTGACTGA 58.947 57.895 0.00 0.00 37.32 3.41
169 170 1.670406 GCCAGCCACTCACTGACTG 60.670 63.158 0.00 0.00 37.32 3.51
170 171 2.746359 GCCAGCCACTCACTGACT 59.254 61.111 0.00 0.00 37.32 3.41
171 172 2.359230 GGCCAGCCACTCACTGAC 60.359 66.667 3.12 0.00 37.32 3.51
172 173 2.848679 TGGCCAGCCACTCACTGA 60.849 61.111 7.43 0.00 41.89 3.41
180 181 4.350816 AGATGTAGTATTATTGGCCAGCCA 59.649 41.667 7.43 7.43 45.63 4.75
181 182 4.911390 AGATGTAGTATTATTGGCCAGCC 58.089 43.478 5.11 0.38 0.00 4.85
182 183 5.577164 CGTAGATGTAGTATTATTGGCCAGC 59.423 44.000 5.11 0.00 0.00 4.85
183 184 6.688578 ACGTAGATGTAGTATTATTGGCCAG 58.311 40.000 5.11 0.00 0.00 4.85
184 185 6.659745 ACGTAGATGTAGTATTATTGGCCA 57.340 37.500 0.00 0.00 0.00 5.36
185 186 7.543520 GGTTACGTAGATGTAGTATTATTGGCC 59.456 40.741 0.00 0.00 0.00 5.36
186 187 8.302438 AGGTTACGTAGATGTAGTATTATTGGC 58.698 37.037 0.00 0.00 0.00 4.52
187 188 9.622004 CAGGTTACGTAGATGTAGTATTATTGG 57.378 37.037 0.00 0.00 0.00 3.16
188 189 9.125906 GCAGGTTACGTAGATGTAGTATTATTG 57.874 37.037 0.00 0.00 0.00 1.90
189 190 9.075678 AGCAGGTTACGTAGATGTAGTATTATT 57.924 33.333 0.00 0.00 0.00 1.40
190 191 8.632906 AGCAGGTTACGTAGATGTAGTATTAT 57.367 34.615 0.00 0.00 0.00 1.28
191 192 8.993121 GTAGCAGGTTACGTAGATGTAGTATTA 58.007 37.037 0.00 0.00 0.00 0.98
192 193 6.956202 AGCAGGTTACGTAGATGTAGTATT 57.044 37.500 0.00 0.00 0.00 1.89
193 194 6.146837 CGTAGCAGGTTACGTAGATGTAGTAT 59.853 42.308 7.42 0.00 41.01 2.12
194 195 5.463392 CGTAGCAGGTTACGTAGATGTAGTA 59.537 44.000 7.42 0.00 41.01 1.82
195 196 4.272018 CGTAGCAGGTTACGTAGATGTAGT 59.728 45.833 7.42 0.00 41.01 2.73
196 197 4.770287 CGTAGCAGGTTACGTAGATGTAG 58.230 47.826 7.42 0.00 41.01 2.74
197 198 4.801147 CGTAGCAGGTTACGTAGATGTA 57.199 45.455 7.42 0.00 41.01 2.29
198 199 3.687572 CGTAGCAGGTTACGTAGATGT 57.312 47.619 7.42 0.00 41.01 3.06
206 207 2.295253 AGCATCACGTAGCAGGTTAC 57.705 50.000 9.11 0.00 0.00 2.50
207 208 2.223409 CGTAGCATCACGTAGCAGGTTA 60.223 50.000 9.11 0.00 37.16 2.85
208 209 1.469251 CGTAGCATCACGTAGCAGGTT 60.469 52.381 9.11 0.00 37.16 3.50
209 210 0.100682 CGTAGCATCACGTAGCAGGT 59.899 55.000 9.11 0.00 37.16 4.00
210 211 2.873367 CGTAGCATCACGTAGCAGG 58.127 57.895 9.11 0.00 37.16 4.85
218 219 3.241067 TGGAAGGTTACGTAGCATCAC 57.759 47.619 11.70 0.00 0.00 3.06
219 220 3.704566 AGATGGAAGGTTACGTAGCATCA 59.295 43.478 11.70 0.06 0.00 3.07
220 221 4.323553 AGATGGAAGGTTACGTAGCATC 57.676 45.455 11.70 8.52 0.00 3.91
221 222 5.864418 TTAGATGGAAGGTTACGTAGCAT 57.136 39.130 11.70 0.59 0.00 3.79
222 223 5.864418 ATTAGATGGAAGGTTACGTAGCA 57.136 39.130 11.70 0.00 0.00 3.49
223 224 6.514063 AGAATTAGATGGAAGGTTACGTAGC 58.486 40.000 0.03 0.03 0.00 3.58
224 225 7.942990 AGAGAATTAGATGGAAGGTTACGTAG 58.057 38.462 0.00 0.00 0.00 3.51
225 226 7.014038 GGAGAGAATTAGATGGAAGGTTACGTA 59.986 40.741 0.00 0.00 0.00 3.57
226 227 6.183360 GGAGAGAATTAGATGGAAGGTTACGT 60.183 42.308 0.00 0.00 0.00 3.57
227 228 6.041069 AGGAGAGAATTAGATGGAAGGTTACG 59.959 42.308 0.00 0.00 0.00 3.18
228 229 7.368198 AGGAGAGAATTAGATGGAAGGTTAC 57.632 40.000 0.00 0.00 0.00 2.50
229 230 6.555360 GGAGGAGAGAATTAGATGGAAGGTTA 59.445 42.308 0.00 0.00 0.00 2.85
230 231 5.368230 GGAGGAGAGAATTAGATGGAAGGTT 59.632 44.000 0.00 0.00 0.00 3.50
231 232 4.904853 GGAGGAGAGAATTAGATGGAAGGT 59.095 45.833 0.00 0.00 0.00 3.50
232 233 4.285775 GGGAGGAGAGAATTAGATGGAAGG 59.714 50.000 0.00 0.00 0.00 3.46
233 234 4.285775 GGGGAGGAGAGAATTAGATGGAAG 59.714 50.000 0.00 0.00 0.00 3.46
234 235 4.235372 GGGGAGGAGAGAATTAGATGGAA 58.765 47.826 0.00 0.00 0.00 3.53
235 236 3.440154 GGGGGAGGAGAGAATTAGATGGA 60.440 52.174 0.00 0.00 0.00 3.41
236 237 2.909662 GGGGGAGGAGAGAATTAGATGG 59.090 54.545 0.00 0.00 0.00 3.51
257 258 0.457035 CCGCACCCATGAAAATCAGG 59.543 55.000 0.00 0.00 0.00 3.86
258 259 0.457035 CCCGCACCCATGAAAATCAG 59.543 55.000 0.00 0.00 0.00 2.90
259 260 0.969917 CCCCGCACCCATGAAAATCA 60.970 55.000 0.00 0.00 0.00 2.57
260 261 1.815866 CCCCGCACCCATGAAAATC 59.184 57.895 0.00 0.00 0.00 2.17
261 262 2.358372 GCCCCGCACCCATGAAAAT 61.358 57.895 0.00 0.00 0.00 1.82
262 263 2.994417 GCCCCGCACCCATGAAAA 60.994 61.111 0.00 0.00 0.00 2.29
279 280 2.807599 AAAGAAGGGGAGGGAGGGGG 62.808 65.000 0.00 0.00 0.00 5.40
280 281 1.230314 AAAGAAGGGGAGGGAGGGG 60.230 63.158 0.00 0.00 0.00 4.79
281 282 0.550147 TGAAAGAAGGGGAGGGAGGG 60.550 60.000 0.00 0.00 0.00 4.30
282 283 1.372501 TTGAAAGAAGGGGAGGGAGG 58.627 55.000 0.00 0.00 0.00 4.30
283 284 3.746792 AATTGAAAGAAGGGGAGGGAG 57.253 47.619 0.00 0.00 0.00 4.30
284 285 4.444611 TCTAATTGAAAGAAGGGGAGGGA 58.555 43.478 0.00 0.00 0.00 4.20
285 286 4.862641 TCTAATTGAAAGAAGGGGAGGG 57.137 45.455 0.00 0.00 0.00 4.30
286 287 7.550712 CAAATTCTAATTGAAAGAAGGGGAGG 58.449 38.462 0.00 0.00 38.29 4.30
287 288 7.038048 GCAAATTCTAATTGAAAGAAGGGGAG 58.962 38.462 0.00 0.00 38.29 4.30
288 289 6.070824 GGCAAATTCTAATTGAAAGAAGGGGA 60.071 38.462 0.00 0.00 38.29 4.81
289 290 6.108687 GGCAAATTCTAATTGAAAGAAGGGG 58.891 40.000 0.00 0.00 38.29 4.79
290 291 6.700352 TGGCAAATTCTAATTGAAAGAAGGG 58.300 36.000 0.00 0.00 38.29 3.95
291 292 8.606040 TTTGGCAAATTCTAATTGAAAGAAGG 57.394 30.769 8.93 0.00 38.29 3.46
293 294 9.775854 TGATTTGGCAAATTCTAATTGAAAGAA 57.224 25.926 25.02 0.00 38.29 2.52
294 295 9.426837 CTGATTTGGCAAATTCTAATTGAAAGA 57.573 29.630 25.02 0.00 38.29 2.52
295 296 8.173130 GCTGATTTGGCAAATTCTAATTGAAAG 58.827 33.333 25.02 11.37 38.29 2.62
296 297 7.660617 TGCTGATTTGGCAAATTCTAATTGAAA 59.339 29.630 25.02 0.00 36.12 2.69
297 298 7.160049 TGCTGATTTGGCAAATTCTAATTGAA 58.840 30.769 25.02 4.60 36.71 2.69
298 299 6.699366 TGCTGATTTGGCAAATTCTAATTGA 58.301 32.000 25.02 3.72 36.71 2.57
299 300 6.456449 GCTGCTGATTTGGCAAATTCTAATTG 60.456 38.462 25.02 13.54 39.30 2.32
300 301 5.583457 GCTGCTGATTTGGCAAATTCTAATT 59.417 36.000 25.02 3.21 39.30 1.40
301 302 5.114081 GCTGCTGATTTGGCAAATTCTAAT 58.886 37.500 25.02 3.98 39.30 1.73
302 303 4.021280 TGCTGCTGATTTGGCAAATTCTAA 60.021 37.500 25.02 11.75 39.30 2.10
303 304 3.510753 TGCTGCTGATTTGGCAAATTCTA 59.489 39.130 25.02 14.14 39.30 2.10
304 305 2.300723 TGCTGCTGATTTGGCAAATTCT 59.699 40.909 25.02 5.55 39.30 2.40
305 306 2.690786 TGCTGCTGATTTGGCAAATTC 58.309 42.857 25.02 17.82 39.30 2.17
306 307 2.843401 TGCTGCTGATTTGGCAAATT 57.157 40.000 25.02 10.31 39.30 1.82
307 308 3.343941 AATGCTGCTGATTTGGCAAAT 57.656 38.095 24.57 24.57 39.30 2.32
308 309 2.843401 AATGCTGCTGATTTGGCAAA 57.157 40.000 16.01 16.01 39.30 3.68
309 310 2.415759 CGTAATGCTGCTGATTTGGCAA 60.416 45.455 0.00 0.00 39.30 4.52
310 311 1.132834 CGTAATGCTGCTGATTTGGCA 59.867 47.619 0.00 0.00 39.06 4.92
311 312 1.133025 ACGTAATGCTGCTGATTTGGC 59.867 47.619 0.00 0.00 0.00 4.52
312 313 4.614555 TTACGTAATGCTGCTGATTTGG 57.385 40.909 3.29 0.00 0.00 3.28
313 314 4.793216 GGTTTACGTAATGCTGCTGATTTG 59.207 41.667 9.18 0.00 0.00 2.32
314 315 4.700213 AGGTTTACGTAATGCTGCTGATTT 59.300 37.500 9.18 0.00 0.00 2.17
315 316 4.261801 AGGTTTACGTAATGCTGCTGATT 58.738 39.130 9.18 0.00 0.00 2.57
316 317 3.873910 AGGTTTACGTAATGCTGCTGAT 58.126 40.909 9.18 0.00 0.00 2.90
317 318 3.328382 AGGTTTACGTAATGCTGCTGA 57.672 42.857 9.18 0.00 0.00 4.26
318 319 4.491924 CGTAAGGTTTACGTAATGCTGCTG 60.492 45.833 9.18 0.00 36.31 4.41
319 320 3.615496 CGTAAGGTTTACGTAATGCTGCT 59.385 43.478 9.18 0.00 36.31 4.24
320 321 3.919827 CGTAAGGTTTACGTAATGCTGC 58.080 45.455 9.18 0.00 36.31 5.25
334 335 1.425412 CACGCAAAGCTACGTAAGGT 58.575 50.000 8.77 0.00 41.32 3.50
335 336 0.719465 CCACGCAAAGCTACGTAAGG 59.281 55.000 8.77 4.43 41.32 2.69
336 337 1.705256 TCCACGCAAAGCTACGTAAG 58.295 50.000 8.77 4.86 41.32 2.34
337 338 1.996898 CATCCACGCAAAGCTACGTAA 59.003 47.619 8.77 2.32 41.32 3.18
338 339 1.067425 ACATCCACGCAAAGCTACGTA 60.067 47.619 8.77 0.00 41.32 3.57
339 340 0.320421 ACATCCACGCAAAGCTACGT 60.320 50.000 3.75 3.75 44.75 3.57
340 341 1.588404 CTACATCCACGCAAAGCTACG 59.412 52.381 2.51 2.51 0.00 3.51
341 342 1.327764 GCTACATCCACGCAAAGCTAC 59.672 52.381 0.00 0.00 0.00 3.58
342 343 1.066502 TGCTACATCCACGCAAAGCTA 60.067 47.619 0.00 0.00 0.00 3.32
343 344 0.321564 TGCTACATCCACGCAAAGCT 60.322 50.000 0.00 0.00 0.00 3.74
344 345 0.734889 ATGCTACATCCACGCAAAGC 59.265 50.000 0.00 0.00 37.20 3.51
345 346 2.789208 CAATGCTACATCCACGCAAAG 58.211 47.619 0.00 0.00 37.20 2.77
346 347 1.135431 GCAATGCTACATCCACGCAAA 60.135 47.619 0.00 0.00 37.20 3.68
347 348 0.451383 GCAATGCTACATCCACGCAA 59.549 50.000 0.00 0.00 37.20 4.85
348 349 0.392863 AGCAATGCTACATCCACGCA 60.393 50.000 5.69 0.00 36.99 5.24
349 350 0.305922 GAGCAATGCTACATCCACGC 59.694 55.000 8.12 0.00 39.88 5.34
350 351 0.578683 CGAGCAATGCTACATCCACG 59.421 55.000 8.12 1.21 39.88 4.94
351 352 1.328680 CACGAGCAATGCTACATCCAC 59.671 52.381 8.12 0.00 39.88 4.02
352 353 1.655484 CACGAGCAATGCTACATCCA 58.345 50.000 8.12 0.00 39.88 3.41
353 354 0.940126 CCACGAGCAATGCTACATCC 59.060 55.000 8.12 0.00 39.88 3.51
354 355 0.305922 GCCACGAGCAATGCTACATC 59.694 55.000 8.12 0.00 39.88 3.06
355 356 2.397751 GCCACGAGCAATGCTACAT 58.602 52.632 8.12 0.00 39.88 2.29
356 357 3.889227 GCCACGAGCAATGCTACA 58.111 55.556 8.12 0.00 39.88 2.74
366 367 3.602513 AAGCAGAGCCAGCCACGAG 62.603 63.158 0.00 0.00 0.00 4.18
367 368 2.680974 AAAAGCAGAGCCAGCCACGA 62.681 55.000 0.00 0.00 0.00 4.35
368 369 1.799258 AAAAAGCAGAGCCAGCCACG 61.799 55.000 0.00 0.00 0.00 4.94
463 471 2.028936 CACCAACGATGCAACCACA 58.971 52.632 0.00 0.00 0.00 4.17
567 575 0.810823 GTGGGTTCGTTCGTTGGACA 60.811 55.000 0.00 0.00 0.00 4.02
589 597 2.827642 GCAGAGCAGCCATGACCC 60.828 66.667 0.00 0.00 0.00 4.46
623 656 0.953471 TGAGGATGGCGACGGTTTTG 60.953 55.000 0.00 0.00 0.00 2.44
642 675 1.070289 GACGAACTGTGGAGGGAAAGT 59.930 52.381 0.00 0.00 0.00 2.66
717 753 0.105709 GGGAGGAGGAGGAGGAGAAG 60.106 65.000 0.00 0.00 0.00 2.85
733 769 1.790157 GGAGAGGATAAGAGGGAGGGA 59.210 57.143 0.00 0.00 0.00 4.20
757 793 3.920196 CTTATACGGGGGCGCGGT 61.920 66.667 18.20 18.20 0.00 5.68
758 794 2.482296 CTACTTATACGGGGGCGCGG 62.482 65.000 8.83 7.58 0.00 6.46
759 795 1.080974 CTACTTATACGGGGGCGCG 60.081 63.158 0.00 0.00 0.00 6.86
760 796 1.373873 GCTACTTATACGGGGGCGC 60.374 63.158 0.00 0.00 0.00 6.53
761 797 0.038526 CTGCTACTTATACGGGGGCG 60.039 60.000 0.00 0.00 0.00 6.13
762 798 0.320508 GCTGCTACTTATACGGGGGC 60.321 60.000 0.00 0.00 0.00 5.80
763 799 0.038526 CGCTGCTACTTATACGGGGG 60.039 60.000 0.00 0.00 0.00 5.40
764 800 0.666577 GCGCTGCTACTTATACGGGG 60.667 60.000 0.00 0.00 0.00 5.73
765 801 1.002250 CGCGCTGCTACTTATACGGG 61.002 60.000 5.56 0.00 0.00 5.28
831 873 4.158764 GGAGTCAGTATATATTCAGGCGCT 59.841 45.833 7.64 0.00 0.00 5.92
832 874 4.425520 GGAGTCAGTATATATTCAGGCGC 58.574 47.826 0.00 0.00 0.00 6.53
903 950 2.415776 CGTATCTCCTCTCCTCGGTAC 58.584 57.143 0.00 0.00 0.00 3.34
917 976 0.249073 CTTGTAGGCAGCGCGTATCT 60.249 55.000 8.43 3.26 31.68 1.98
918 977 1.822250 GCTTGTAGGCAGCGCGTATC 61.822 60.000 8.43 0.00 31.68 2.24
919 978 1.883084 GCTTGTAGGCAGCGCGTAT 60.883 57.895 8.43 0.00 31.68 3.06
920 979 2.501223 AAGCTTGTAGGCAGCGCGTA 62.501 55.000 8.43 0.00 34.17 4.42
921 980 3.883744 AAGCTTGTAGGCAGCGCGT 62.884 57.895 8.43 0.00 34.17 6.01
924 983 2.327343 TGCAAGCTTGTAGGCAGCG 61.327 57.895 26.55 0.00 37.98 5.18
925 984 1.211190 GTGCAAGCTTGTAGGCAGC 59.789 57.895 26.55 11.70 36.86 5.25
927 986 0.890542 CTGGTGCAAGCTTGTAGGCA 60.891 55.000 26.55 16.06 33.76 4.75
928 987 1.589716 CCTGGTGCAAGCTTGTAGGC 61.590 60.000 26.55 13.54 33.76 3.93
929 988 0.962356 CCCTGGTGCAAGCTTGTAGG 60.962 60.000 26.55 24.37 33.76 3.18
930 989 1.589716 GCCCTGGTGCAAGCTTGTAG 61.590 60.000 26.55 18.24 33.76 2.74
932 991 2.914097 GCCCTGGTGCAAGCTTGT 60.914 61.111 26.55 0.00 33.76 3.16
933 992 4.047059 CGCCCTGGTGCAAGCTTG 62.047 66.667 22.44 22.44 33.76 4.01
934 993 3.790416 TTCGCCCTGGTGCAAGCTT 62.790 57.895 0.00 0.00 33.76 3.74
935 994 4.269523 TTCGCCCTGGTGCAAGCT 62.270 61.111 7.72 0.00 33.76 3.74
936 995 3.741476 CTTCGCCCTGGTGCAAGC 61.741 66.667 7.72 0.00 0.00 4.01
937 996 3.741476 GCTTCGCCCTGGTGCAAG 61.741 66.667 7.72 9.84 0.00 4.01
981 1040 3.952628 GAGAAACCACCGCCCTCCG 62.953 68.421 0.00 0.00 0.00 4.63
982 1041 2.046217 GAGAAACCACCGCCCTCC 60.046 66.667 0.00 0.00 0.00 4.30
984 1043 1.002134 CATGAGAAACCACCGCCCT 60.002 57.895 0.00 0.00 0.00 5.19
987 1046 2.877691 GCCATGAGAAACCACCGC 59.122 61.111 0.00 0.00 0.00 5.68
992 1051 0.321653 AGTCACCGCCATGAGAAACC 60.322 55.000 0.00 0.00 0.00 3.27
993 1052 0.798776 CAGTCACCGCCATGAGAAAC 59.201 55.000 0.00 0.00 0.00 2.78
994 1053 0.955428 GCAGTCACCGCCATGAGAAA 60.955 55.000 0.00 0.00 0.00 2.52
995 1054 1.375908 GCAGTCACCGCCATGAGAA 60.376 57.895 0.00 0.00 0.00 2.87
996 1055 2.265739 GCAGTCACCGCCATGAGA 59.734 61.111 0.00 0.00 0.00 3.27
997 1056 3.190849 CGCAGTCACCGCCATGAG 61.191 66.667 0.00 0.00 0.00 2.90
998 1057 3.690280 TCGCAGTCACCGCCATGA 61.690 61.111 0.00 0.00 0.00 3.07
1308 1367 3.558411 GCGAGCTCGGTGATGCAC 61.558 66.667 35.10 13.87 40.23 4.57
1574 2100 4.079850 CGGGAGTCTGCTGCTGCT 62.080 66.667 17.00 2.26 40.48 4.24
1617 2149 4.961511 TGCGCTTGCGACGGAGTT 62.962 61.111 19.55 0.00 39.10 3.01
1787 2337 1.975363 GCGTCAACATGAGCCTGAGC 61.975 60.000 0.00 0.00 40.32 4.26
1788 2338 1.364626 GGCGTCAACATGAGCCTGAG 61.365 60.000 0.00 0.00 45.67 3.35
1951 2517 6.870439 ACATGATCATTCTATCCACATGTACG 59.130 38.462 5.16 0.00 42.78 3.67
2014 2580 1.138266 ACGACGAAATGTATGGAGGGG 59.862 52.381 0.00 0.00 0.00 4.79
2015 2581 2.596904 ACGACGAAATGTATGGAGGG 57.403 50.000 0.00 0.00 0.00 4.30
2144 2710 0.390340 TGCAGGTCGACAGAGAATGC 60.390 55.000 18.91 15.99 36.33 3.56
2188 2754 9.376075 TGAATATACTACTAGTACTATCACCGC 57.624 37.037 2.33 0.00 32.84 5.68
2422 2998 3.423154 CGGACTTGCGGAGTTGGC 61.423 66.667 0.00 0.00 39.19 4.52
2469 3048 4.486125 TGATTAGTGCATCAGTTGGCTA 57.514 40.909 0.00 0.00 0.00 3.93
2519 3098 7.243604 ACAAATATGCAAAAGAAATCCTGGA 57.756 32.000 0.00 0.00 0.00 3.86
2520 3099 7.910441 AACAAATATGCAAAAGAAATCCTGG 57.090 32.000 0.00 0.00 0.00 4.45
2539 3130 6.695278 CCTTCGAAAAGCACTAATGAAACAAA 59.305 34.615 0.00 0.00 0.00 2.83
2552 3143 5.828299 TCTTTTTCTTCCTTCGAAAAGCA 57.172 34.783 0.00 0.00 40.30 3.91
2638 3234 2.505819 AGGGAGAACGCAACCATCTTAT 59.494 45.455 0.00 0.00 0.00 1.73
2650 3246 2.490991 ACGGAAAGAAAAGGGAGAACG 58.509 47.619 0.00 0.00 0.00 3.95
2678 3274 8.023128 GCTGCTAACTCAACTATCATTTTTCAA 58.977 33.333 0.00 0.00 0.00 2.69
2679 3275 7.174772 TGCTGCTAACTCAACTATCATTTTTCA 59.825 33.333 0.00 0.00 0.00 2.69
2724 3321 0.901124 TGTTGCTTGTTTGGCCAACT 59.099 45.000 20.35 0.00 36.21 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.