Multiple sequence alignment - TraesCS2B01G192300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G192300 chr2B 100.000 4636 0 0 1 4636 167801434 167796799 0.000000e+00 8562
1 TraesCS2B01G192300 chr2D 95.669 3902 125 21 1 3882 117230473 117226596 0.000000e+00 6229
2 TraesCS2B01G192300 chr2D 95.041 121 6 0 4511 4631 117220403 117220283 1.700000e-44 191
3 TraesCS2B01G192300 chr2A 97.252 2074 47 9 1772 3838 118672725 118670655 0.000000e+00 3506
4 TraesCS2B01G192300 chr2A 91.513 813 46 10 394 1203 118674023 118673231 0.000000e+00 1098
5 TraesCS2B01G192300 chr2A 90.845 568 46 3 1204 1765 118673378 118672811 0.000000e+00 756
6 TraesCS2B01G192300 chr2A 83.060 366 31 17 1 346 118674594 118674240 2.100000e-78 303
7 TraesCS2B01G192300 chr2A 92.857 126 8 1 4507 4631 118669095 118668970 1.020000e-41 182
8 TraesCS2B01G192300 chr2A 93.407 91 5 1 3907 3996 118670156 118670066 2.910000e-27 134
9 TraesCS2B01G192300 chr5D 88.835 412 40 4 4105 4513 526878151 526877743 6.920000e-138 501
10 TraesCS2B01G192300 chr7A 88.998 409 37 6 4105 4507 545065679 545066085 2.490000e-137 499
11 TraesCS2B01G192300 chr7A 88.480 408 39 6 4105 4507 195412116 195411712 1.940000e-133 486
12 TraesCS2B01G192300 chr7A 87.952 415 44 4 4105 4513 150237521 150237107 6.970000e-133 484
13 TraesCS2B01G192300 chr4B 88.670 406 37 8 4105 4507 482128456 482128855 1.940000e-133 486
14 TraesCS2B01G192300 chr1D 88.537 410 36 9 4104 4507 395168277 395167873 1.940000e-133 486
15 TraesCS2B01G192300 chr3D 88.206 407 40 6 4104 4507 57005042 57005443 3.240000e-131 479
16 TraesCS2B01G192300 chr7D 87.711 415 44 5 4105 4516 48707156 48707566 1.170000e-130 477
17 TraesCS2B01G192300 chr7D 87.470 415 44 7 4105 4516 48751061 48751470 5.430000e-129 472


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G192300 chr2B 167796799 167801434 4635 True 8562.0 8562 100.000 1 4636 1 chr2B.!!$R1 4635
1 TraesCS2B01G192300 chr2D 117226596 117230473 3877 True 6229.0 6229 95.669 1 3882 1 chr2D.!!$R2 3881
2 TraesCS2B01G192300 chr2A 118668970 118674594 5624 True 996.5 3506 91.489 1 4631 6 chr2A.!!$R1 4630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
492 689 0.618458 TTCTGCCATACCTGGTCCAC 59.382 55.0 0.63 0.0 45.10 4.02 F
1163 1373 0.390340 GCTCAAGCAGACACATCGGA 60.390 55.0 0.00 0.0 41.59 4.55 F
2522 2819 0.033781 GCAAGTTGCATGGCCTCAAA 59.966 50.0 22.90 0.0 44.26 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1389 1599 1.801913 CACGTCGTGCTCTGCTACC 60.802 63.158 13.22 0.0 0.00 3.18 R
2643 2940 0.244994 TCCTCGAGCTCTTTCTGTGC 59.755 55.000 12.85 0.0 35.59 4.57 R
4020 4784 0.032540 CAACCTGCCAAACCTGCTTC 59.967 55.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.283337 TCGTTCCATGGATTAGTAGGACA 58.717 43.478 17.06 0.00 0.00 4.02
43 44 4.654262 TCCATGGATTAGTAGGACAACTCC 59.346 45.833 11.44 0.00 36.71 3.85
44 45 4.408921 CCATGGATTAGTAGGACAACTCCA 59.591 45.833 5.56 0.00 39.39 3.86
48 49 5.964477 TGGATTAGTAGGACAACTCCATCTT 59.036 40.000 0.00 0.00 39.39 2.40
88 89 1.271379 GGCGGTCCGGAAAGAATTTTT 59.729 47.619 14.38 0.00 39.27 1.94
89 90 2.592194 GCGGTCCGGAAAGAATTTTTC 58.408 47.619 14.38 0.00 39.27 2.29
90 91 2.030628 GCGGTCCGGAAAGAATTTTTCA 60.031 45.455 14.38 0.00 39.27 2.69
92 93 4.142556 GCGGTCCGGAAAGAATTTTTCATA 60.143 41.667 14.38 0.00 39.27 2.15
93 94 5.449999 GCGGTCCGGAAAGAATTTTTCATAT 60.450 40.000 14.38 0.00 39.27 1.78
94 95 6.238538 GCGGTCCGGAAAGAATTTTTCATATA 60.239 38.462 14.38 0.00 39.27 0.86
95 96 7.521585 GCGGTCCGGAAAGAATTTTTCATATAT 60.522 37.037 14.38 0.00 39.27 0.86
121 122 2.052237 GTTTGCGTCACTGCGTGG 60.052 61.111 8.46 0.00 37.81 4.94
152 156 3.165071 AGAACCCCACTGCCATAAAAAG 58.835 45.455 0.00 0.00 0.00 2.27
157 161 3.306710 CCCCACTGCCATAAAAAGAAACC 60.307 47.826 0.00 0.00 0.00 3.27
158 162 3.578282 CCCACTGCCATAAAAAGAAACCT 59.422 43.478 0.00 0.00 0.00 3.50
159 163 4.321974 CCCACTGCCATAAAAAGAAACCTC 60.322 45.833 0.00 0.00 0.00 3.85
160 164 4.524328 CCACTGCCATAAAAAGAAACCTCT 59.476 41.667 0.00 0.00 0.00 3.69
161 165 5.464168 CACTGCCATAAAAAGAAACCTCTG 58.536 41.667 0.00 0.00 30.03 3.35
162 166 5.010012 CACTGCCATAAAAAGAAACCTCTGT 59.990 40.000 0.00 0.00 30.03 3.41
430 627 6.127810 ACTGAACATGATTGGAATGATTCG 57.872 37.500 0.00 0.00 0.00 3.34
442 639 5.132502 TGGAATGATTCGGCTCATAATTGT 58.867 37.500 0.00 0.00 34.79 2.71
479 676 3.670105 TGGGACAAGGATTTCTGCC 57.330 52.632 0.00 0.00 31.92 4.85
492 689 0.618458 TTCTGCCATACCTGGTCCAC 59.382 55.000 0.63 0.00 45.10 4.02
515 712 9.950496 CCACTATGACATATTTTTAGGAGCTAT 57.050 33.333 0.00 0.00 0.00 2.97
557 754 3.726291 TGGTTGCTTACTTTGGCTTTC 57.274 42.857 0.00 0.00 0.00 2.62
702 899 5.473504 TCAGGATCAGTAAAGTTCTTTTGGC 59.526 40.000 3.12 0.00 0.00 4.52
725 933 3.309138 CAGTTGCTGCACATAGTCATCTC 59.691 47.826 0.00 0.00 0.00 2.75
800 1008 4.965814 TGGCATTGCAAAATAAGTTTGGA 58.034 34.783 11.39 0.00 45.79 3.53
804 1012 6.648725 GGCATTGCAAAATAAGTTTGGACTAA 59.351 34.615 11.39 0.00 46.01 2.24
895 1105 4.524714 ACATGTAGTGCAGTGTACTCTTCT 59.475 41.667 17.74 0.00 0.00 2.85
897 1107 6.208797 ACATGTAGTGCAGTGTACTCTTCTTA 59.791 38.462 17.74 0.00 0.00 2.10
898 1108 6.010294 TGTAGTGCAGTGTACTCTTCTTAC 57.990 41.667 17.74 9.64 0.00 2.34
939 1149 3.616956 ATTCGTCTCTTGGAGCATGAA 57.383 42.857 0.00 0.00 0.00 2.57
940 1150 3.616956 TTCGTCTCTTGGAGCATGAAT 57.383 42.857 0.00 0.00 0.00 2.57
941 1151 2.897436 TCGTCTCTTGGAGCATGAATG 58.103 47.619 0.00 0.00 0.00 2.67
962 1172 7.774625 TGAATGCATGATACTCACTTCCATTAA 59.225 33.333 0.00 0.00 0.00 1.40
995 1205 1.592669 CGAACATAGCGGAGGCCTG 60.593 63.158 12.00 0.00 41.24 4.85
1113 1323 0.973632 TCAGTAGCAACGGTGGTCAT 59.026 50.000 9.22 0.00 36.66 3.06
1122 1332 5.189928 AGCAACGGTGGTCATGAAAATATA 58.810 37.500 0.00 0.00 0.00 0.86
1154 1364 2.158769 TGGAAAACTCAGCTCAAGCAGA 60.159 45.455 4.59 0.60 45.16 4.26
1163 1373 0.390340 GCTCAAGCAGACACATCGGA 60.390 55.000 0.00 0.00 41.59 4.55
1224 1434 8.522830 TCAGAAAATCCAGATATTTTTGTGGAC 58.477 33.333 6.78 0.00 41.88 4.02
1252 1462 3.759581 ACTCTGGAAGTCAGTAACGGTA 58.240 45.455 0.00 0.00 43.76 4.02
1286 1496 3.498774 AGATGCACACAAGGAGAAGTT 57.501 42.857 0.00 0.00 0.00 2.66
1307 1517 2.975536 CCAAGCAGCCACATTGGG 59.024 61.111 3.62 0.00 39.87 4.12
1369 1579 6.535508 GGAGTTATCTTCACATTCACAGGTAC 59.464 42.308 0.00 0.00 0.00 3.34
1389 1599 5.163499 GGTACTGGTAAAGTCTCATCCTGAG 60.163 48.000 0.00 0.00 45.59 3.35
1419 1629 2.757896 CACGACGTGGAATCAAATTCG 58.242 47.619 20.26 0.00 40.17 3.34
1446 1656 1.559682 GGCACAGGTCCTGAAATCCTA 59.440 52.381 26.18 0.00 35.18 2.94
1899 2196 7.046652 TCAGAAAGAAATTCCACAATGCAAAA 58.953 30.769 0.00 0.00 38.94 2.44
2195 2492 5.286558 GCTGAGAACATTACACGAAGAGTAC 59.713 44.000 0.00 0.00 32.43 2.73
2196 2493 6.321848 TGAGAACATTACACGAAGAGTACA 57.678 37.500 0.00 0.00 32.43 2.90
2465 2762 5.050091 ACAACTGAACAATAAGCTTCTGTCG 60.050 40.000 0.00 3.56 30.69 4.35
2522 2819 0.033781 GCAAGTTGCATGGCCTCAAA 59.966 50.000 22.90 0.00 44.26 2.69
2541 2838 6.225981 TCAAATCTGAGCTTGCAGACTATA 57.774 37.500 7.24 0.00 46.72 1.31
2643 2940 7.201600 GCTCAATTAAGGAAACTCTAGCTTCAG 60.202 40.741 0.00 0.00 42.68 3.02
3026 3323 1.334869 GCAGCTGCAACTACAACAAGT 59.665 47.619 33.36 0.00 41.59 3.16
3050 3347 3.253188 GCAGGTTATGTGCTGTTCTCAAA 59.747 43.478 0.00 0.00 37.96 2.69
3165 3462 0.172352 CAGAGGAGTGACGCTTCCTC 59.828 60.000 19.02 19.02 46.70 3.71
3356 3653 2.224597 TGAACTTGCATTGGAGAGAGCA 60.225 45.455 0.00 0.00 34.79 4.26
3816 4114 5.596836 AGTTTTTGTGAGGAAAATGCTCA 57.403 34.783 0.00 0.00 42.67 4.26
3819 4117 6.878389 AGTTTTTGTGAGGAAAATGCTCAAAA 59.122 30.769 3.03 1.90 46.30 2.44
3820 4118 7.553760 AGTTTTTGTGAGGAAAATGCTCAAAAT 59.446 29.630 5.48 0.00 46.30 1.82
3821 4119 6.847956 TTTGTGAGGAAAATGCTCAAAATG 57.152 33.333 5.48 0.00 46.30 2.32
3822 4120 5.534207 TGTGAGGAAAATGCTCAAAATGT 57.466 34.783 3.03 0.00 46.30 2.71
3823 4121 6.647334 TGTGAGGAAAATGCTCAAAATGTA 57.353 33.333 3.03 0.00 46.30 2.29
3824 4122 6.680810 TGTGAGGAAAATGCTCAAAATGTAG 58.319 36.000 3.03 0.00 46.30 2.74
3825 4123 5.574443 GTGAGGAAAATGCTCAAAATGTAGC 59.426 40.000 3.03 0.00 46.30 3.58
3826 4124 6.791028 GTGAGGAAAATGCTCAAAATGTAGCA 60.791 38.462 3.03 0.00 46.30 3.49
3831 4538 3.902261 TGCTCAAAATGTAGCACTGTG 57.098 42.857 2.76 2.76 43.56 3.66
3832 4539 3.475575 TGCTCAAAATGTAGCACTGTGA 58.524 40.909 12.86 0.00 43.56 3.58
3847 4554 6.000219 AGCACTGTGATGTTCTGTTATCTTT 59.000 36.000 12.86 0.00 0.00 2.52
3852 4559 6.768483 TGTGATGTTCTGTTATCTTTCTCCA 58.232 36.000 0.00 0.00 0.00 3.86
3863 4570 1.691976 TCTTTCTCCACTTGCGAGGAA 59.308 47.619 5.79 0.00 32.57 3.36
3894 4601 9.237846 CCTCTTTTTGTTGAGTTACAATTCTTC 57.762 33.333 0.00 0.00 40.76 2.87
3943 4670 3.484407 CTCTGAATAAATGGGAGGCCAG 58.516 50.000 5.01 0.00 0.00 4.85
3944 4671 2.852449 TCTGAATAAATGGGAGGCCAGT 59.148 45.455 5.01 0.00 0.00 4.00
3946 4673 2.580322 TGAATAAATGGGAGGCCAGTCA 59.420 45.455 5.01 0.00 0.00 3.41
4011 4775 4.556233 GGTAACAAAAGAATGGCAGAACC 58.444 43.478 0.00 0.00 39.84 3.62
4035 5677 1.682854 TGAAAGAAGCAGGTTTGGCAG 59.317 47.619 0.00 0.00 0.00 4.85
4037 5679 0.106015 AAGAAGCAGGTTTGGCAGGT 60.106 50.000 0.00 0.00 0.00 4.00
4038 5680 0.106015 AGAAGCAGGTTTGGCAGGTT 60.106 50.000 0.00 0.00 0.00 3.50
4039 5681 0.032540 GAAGCAGGTTTGGCAGGTTG 59.967 55.000 0.00 0.00 0.00 3.77
4048 5690 3.790223 GGCAGGTTGGCATGGAAA 58.210 55.556 0.00 0.00 43.14 3.13
4049 5691 2.289840 GGCAGGTTGGCATGGAAAT 58.710 52.632 0.00 0.00 43.14 2.17
4053 5695 2.159198 GCAGGTTGGCATGGAAATACTG 60.159 50.000 0.00 0.00 0.00 2.74
4054 5696 3.091545 CAGGTTGGCATGGAAATACTGT 58.908 45.455 0.00 0.00 0.00 3.55
4055 5697 3.129287 CAGGTTGGCATGGAAATACTGTC 59.871 47.826 0.00 0.00 0.00 3.51
4056 5698 3.088532 GGTTGGCATGGAAATACTGTCA 58.911 45.455 0.00 0.00 0.00 3.58
4057 5699 3.119495 GGTTGGCATGGAAATACTGTCAC 60.119 47.826 0.00 0.00 0.00 3.67
4058 5700 3.719268 TGGCATGGAAATACTGTCACT 57.281 42.857 0.00 0.00 0.00 3.41
4059 5701 4.032960 TGGCATGGAAATACTGTCACTT 57.967 40.909 0.00 0.00 0.00 3.16
4060 5702 5.172687 TGGCATGGAAATACTGTCACTTA 57.827 39.130 0.00 0.00 0.00 2.24
4061 5703 5.185454 TGGCATGGAAATACTGTCACTTAG 58.815 41.667 0.00 0.00 0.00 2.18
4062 5704 4.576463 GGCATGGAAATACTGTCACTTAGG 59.424 45.833 0.00 0.00 0.00 2.69
4063 5705 4.576463 GCATGGAAATACTGTCACTTAGGG 59.424 45.833 0.00 0.00 0.00 3.53
4064 5706 5.629133 GCATGGAAATACTGTCACTTAGGGA 60.629 44.000 0.00 0.00 0.00 4.20
4065 5707 6.414732 CATGGAAATACTGTCACTTAGGGAA 58.585 40.000 0.00 0.00 0.00 3.97
4066 5708 6.049955 TGGAAATACTGTCACTTAGGGAAG 57.950 41.667 0.00 0.00 38.76 3.46
4067 5709 5.783360 TGGAAATACTGTCACTTAGGGAAGA 59.217 40.000 0.00 0.00 36.45 2.87
4068 5710 6.271391 TGGAAATACTGTCACTTAGGGAAGAA 59.729 38.462 0.00 0.00 36.45 2.52
4069 5711 6.594547 GGAAATACTGTCACTTAGGGAAGAAC 59.405 42.308 0.00 0.00 36.45 3.01
4070 5712 6.936968 AATACTGTCACTTAGGGAAGAACT 57.063 37.500 0.00 0.00 36.45 3.01
4071 5713 6.936968 ATACTGTCACTTAGGGAAGAACTT 57.063 37.500 0.00 0.00 36.45 2.66
4072 5714 5.632034 ACTGTCACTTAGGGAAGAACTTT 57.368 39.130 0.00 0.00 36.45 2.66
4073 5715 5.612351 ACTGTCACTTAGGGAAGAACTTTC 58.388 41.667 0.00 0.00 36.45 2.62
4074 5716 5.130477 ACTGTCACTTAGGGAAGAACTTTCA 59.870 40.000 0.00 0.00 36.45 2.69
4075 5717 5.996644 TGTCACTTAGGGAAGAACTTTCAA 58.003 37.500 0.00 0.00 36.45 2.69
4076 5718 5.820947 TGTCACTTAGGGAAGAACTTTCAAC 59.179 40.000 0.00 0.00 36.45 3.18
4077 5719 5.820947 GTCACTTAGGGAAGAACTTTCAACA 59.179 40.000 0.00 0.00 36.45 3.33
4078 5720 6.486993 GTCACTTAGGGAAGAACTTTCAACAT 59.513 38.462 0.00 0.00 36.45 2.71
4079 5721 7.013369 GTCACTTAGGGAAGAACTTTCAACATT 59.987 37.037 0.00 0.00 36.45 2.71
4080 5722 7.228706 TCACTTAGGGAAGAACTTTCAACATTC 59.771 37.037 0.00 0.00 36.45 2.67
4081 5723 7.229506 CACTTAGGGAAGAACTTTCAACATTCT 59.770 37.037 0.00 0.00 36.45 2.40
4082 5724 7.780271 ACTTAGGGAAGAACTTTCAACATTCTT 59.220 33.333 0.00 0.00 43.62 2.52
4083 5725 6.396829 AGGGAAGAACTTTCAACATTCTTG 57.603 37.500 3.33 0.00 41.58 3.02
4084 5726 6.129179 AGGGAAGAACTTTCAACATTCTTGA 58.871 36.000 3.33 0.00 41.58 3.02
4085 5727 6.264067 AGGGAAGAACTTTCAACATTCTTGAG 59.736 38.462 3.33 0.00 41.58 3.02
4086 5728 5.917447 GGAAGAACTTTCAACATTCTTGAGC 59.083 40.000 3.33 0.00 41.58 4.26
4087 5729 6.455360 AAGAACTTTCAACATTCTTGAGCA 57.545 33.333 0.00 0.00 40.35 4.26
4088 5730 6.455360 AGAACTTTCAACATTCTTGAGCAA 57.545 33.333 0.00 0.00 28.03 3.91
4089 5731 7.047460 AGAACTTTCAACATTCTTGAGCAAT 57.953 32.000 0.00 0.00 28.03 3.56
4090 5732 7.495055 AGAACTTTCAACATTCTTGAGCAATT 58.505 30.769 0.00 0.00 28.03 2.32
4091 5733 7.650903 AGAACTTTCAACATTCTTGAGCAATTC 59.349 33.333 0.00 0.00 28.03 2.17
4092 5734 7.047460 ACTTTCAACATTCTTGAGCAATTCT 57.953 32.000 0.00 0.00 0.00 2.40
4093 5735 6.921857 ACTTTCAACATTCTTGAGCAATTCTG 59.078 34.615 0.00 0.00 0.00 3.02
4094 5736 5.381174 TCAACATTCTTGAGCAATTCTGG 57.619 39.130 0.00 0.00 0.00 3.86
4095 5737 4.828939 TCAACATTCTTGAGCAATTCTGGT 59.171 37.500 0.00 0.00 35.48 4.00
4096 5738 6.003326 TCAACATTCTTGAGCAATTCTGGTA 58.997 36.000 0.00 0.00 32.02 3.25
4097 5739 6.149973 TCAACATTCTTGAGCAATTCTGGTAG 59.850 38.462 0.00 0.00 32.02 3.18
4098 5740 5.809001 ACATTCTTGAGCAATTCTGGTAGA 58.191 37.500 0.00 0.00 32.02 2.59
4099 5741 5.879223 ACATTCTTGAGCAATTCTGGTAGAG 59.121 40.000 0.00 0.00 32.02 2.43
4100 5742 5.489792 TTCTTGAGCAATTCTGGTAGAGT 57.510 39.130 0.00 0.00 32.02 3.24
4101 5743 5.078411 TCTTGAGCAATTCTGGTAGAGTC 57.922 43.478 0.00 0.00 32.02 3.36
4102 5744 4.774726 TCTTGAGCAATTCTGGTAGAGTCT 59.225 41.667 0.00 0.00 32.02 3.24
4103 5745 4.727507 TGAGCAATTCTGGTAGAGTCTC 57.272 45.455 0.00 0.00 32.02 3.36
4104 5746 3.129462 TGAGCAATTCTGGTAGAGTCTCG 59.871 47.826 0.00 0.00 32.02 4.04
4105 5747 2.428890 AGCAATTCTGGTAGAGTCTCGG 59.571 50.000 0.00 0.00 0.00 4.63
4106 5748 2.427453 GCAATTCTGGTAGAGTCTCGGA 59.573 50.000 0.00 0.00 0.00 4.55
4107 5749 3.490078 GCAATTCTGGTAGAGTCTCGGAG 60.490 52.174 0.00 0.00 0.00 4.63
4108 5750 2.421751 TTCTGGTAGAGTCTCGGAGG 57.578 55.000 4.96 0.00 0.00 4.30
4109 5751 0.547075 TCTGGTAGAGTCTCGGAGGG 59.453 60.000 4.96 0.00 0.00 4.30
4110 5752 0.466555 CTGGTAGAGTCTCGGAGGGG 60.467 65.000 4.96 0.00 0.00 4.79
4111 5753 0.917821 TGGTAGAGTCTCGGAGGGGA 60.918 60.000 4.96 0.00 0.00 4.81
4112 5754 0.258194 GGTAGAGTCTCGGAGGGGAA 59.742 60.000 4.96 0.00 0.00 3.97
4113 5755 1.391577 GTAGAGTCTCGGAGGGGAAC 58.608 60.000 4.96 0.00 0.00 3.62
4114 5756 0.997363 TAGAGTCTCGGAGGGGAACA 59.003 55.000 4.96 0.00 0.00 3.18
4115 5757 0.336737 AGAGTCTCGGAGGGGAACAT 59.663 55.000 4.96 0.00 0.00 2.71
4116 5758 1.196012 GAGTCTCGGAGGGGAACATT 58.804 55.000 4.96 0.00 0.00 2.71
4117 5759 1.555533 GAGTCTCGGAGGGGAACATTT 59.444 52.381 4.96 0.00 0.00 2.32
4118 5760 1.279271 AGTCTCGGAGGGGAACATTTG 59.721 52.381 4.96 0.00 0.00 2.32
4119 5761 0.618458 TCTCGGAGGGGAACATTTGG 59.382 55.000 4.96 0.00 0.00 3.28
4120 5762 0.328258 CTCGGAGGGGAACATTTGGT 59.672 55.000 0.00 0.00 0.00 3.67
4121 5763 0.774908 TCGGAGGGGAACATTTGGTT 59.225 50.000 0.00 0.00 44.10 3.67
4131 5773 3.603965 AACATTTGGTTCCTGGGTACA 57.396 42.857 0.00 0.00 33.35 2.90
4132 5774 3.825908 ACATTTGGTTCCTGGGTACAT 57.174 42.857 0.00 0.00 0.00 2.29
4133 5775 4.938575 ACATTTGGTTCCTGGGTACATA 57.061 40.909 0.00 0.00 0.00 2.29
4134 5776 5.466127 ACATTTGGTTCCTGGGTACATAT 57.534 39.130 0.00 0.00 0.00 1.78
4135 5777 5.200483 ACATTTGGTTCCTGGGTACATATG 58.800 41.667 0.00 0.00 0.00 1.78
4136 5778 4.938575 TTTGGTTCCTGGGTACATATGT 57.061 40.909 13.93 13.93 0.00 2.29
4137 5779 6.069323 ACATTTGGTTCCTGGGTACATATGTA 60.069 38.462 11.62 11.62 0.00 2.29
4183 5825 9.911138 AGCAATTCAACAAAAAGTCAAAAATTT 57.089 22.222 0.00 0.00 0.00 1.82
4189 5831 9.265901 TCAACAAAAAGTCAAAAATTTCTGACA 57.734 25.926 23.11 0.36 43.64 3.58
4190 5832 9.875675 CAACAAAAAGTCAAAAATTTCTGACAA 57.124 25.926 23.11 0.00 43.64 3.18
4219 5861 9.898152 TTTTTGAAATAAACTTGACCCTTCATT 57.102 25.926 0.00 0.00 0.00 2.57
4220 5862 9.898152 TTTTGAAATAAACTTGACCCTTCATTT 57.102 25.926 0.00 0.00 0.00 2.32
4221 5863 9.898152 TTTGAAATAAACTTGACCCTTCATTTT 57.102 25.926 0.00 0.00 0.00 1.82
4248 5890 9.847224 AATAGTAAGAAAAGTTCCACAAGAAGA 57.153 29.630 0.00 0.00 34.29 2.87
4249 5891 9.847224 ATAGTAAGAAAAGTTCCACAAGAAGAA 57.153 29.630 0.00 0.00 34.29 2.52
4250 5892 8.575649 AGTAAGAAAAGTTCCACAAGAAGAAA 57.424 30.769 0.00 0.00 34.29 2.52
4251 5893 9.020731 AGTAAGAAAAGTTCCACAAGAAGAAAA 57.979 29.630 0.00 0.00 34.29 2.29
4252 5894 9.803315 GTAAGAAAAGTTCCACAAGAAGAAAAT 57.197 29.630 0.00 0.00 34.29 1.82
4254 5896 8.932945 AGAAAAGTTCCACAAGAAGAAAATTC 57.067 30.769 0.00 0.00 34.29 2.17
4255 5897 7.981789 AGAAAAGTTCCACAAGAAGAAAATTCC 59.018 33.333 0.00 0.00 34.29 3.01
4256 5898 7.423844 AAAGTTCCACAAGAAGAAAATTCCT 57.576 32.000 0.00 0.00 34.29 3.36
4257 5899 6.641169 AGTTCCACAAGAAGAAAATTCCTC 57.359 37.500 0.00 0.00 34.29 3.71
4258 5900 6.368805 AGTTCCACAAGAAGAAAATTCCTCT 58.631 36.000 0.00 0.00 34.29 3.69
4259 5901 6.836007 AGTTCCACAAGAAGAAAATTCCTCTT 59.164 34.615 1.97 1.97 38.23 2.85
4260 5902 7.343057 AGTTCCACAAGAAGAAAATTCCTCTTT 59.657 33.333 4.63 0.00 36.18 2.52
4261 5903 7.042797 TCCACAAGAAGAAAATTCCTCTTTG 57.957 36.000 4.63 6.87 36.18 2.77
4262 5904 6.833416 TCCACAAGAAGAAAATTCCTCTTTGA 59.167 34.615 4.63 1.17 36.18 2.69
4263 5905 6.920210 CCACAAGAAGAAAATTCCTCTTTGAC 59.080 38.462 4.63 0.00 36.18 3.18
4264 5906 7.416664 CCACAAGAAGAAAATTCCTCTTTGACA 60.417 37.037 4.63 0.00 36.18 3.58
4265 5907 8.139989 CACAAGAAGAAAATTCCTCTTTGACAT 58.860 33.333 4.63 0.00 36.18 3.06
4266 5908 8.139989 ACAAGAAGAAAATTCCTCTTTGACATG 58.860 33.333 4.63 0.00 36.18 3.21
4267 5909 7.830099 AGAAGAAAATTCCTCTTTGACATGT 57.170 32.000 0.00 0.00 33.24 3.21
4268 5910 8.242729 AGAAGAAAATTCCTCTTTGACATGTT 57.757 30.769 0.00 0.00 33.24 2.71
4269 5911 8.699130 AGAAGAAAATTCCTCTTTGACATGTTT 58.301 29.630 0.00 0.00 33.24 2.83
4270 5912 9.317936 GAAGAAAATTCCTCTTTGACATGTTTT 57.682 29.630 0.00 0.00 33.24 2.43
4297 5939 7.899178 AAAAAGACAAATTTTCGGTCAAAGT 57.101 28.000 9.15 0.00 31.25 2.66
4298 5940 8.989653 AAAAAGACAAATTTTCGGTCAAAGTA 57.010 26.923 9.15 0.00 31.25 2.24
4299 5941 8.628882 AAAAGACAAATTTTCGGTCAAAGTAG 57.371 30.769 9.15 0.00 34.04 2.57
4300 5942 5.758924 AGACAAATTTTCGGTCAAAGTAGC 58.241 37.500 9.15 0.00 34.04 3.58
4301 5943 4.533222 ACAAATTTTCGGTCAAAGTAGCG 58.467 39.130 0.00 0.00 41.54 4.26
4302 5944 4.035909 ACAAATTTTCGGTCAAAGTAGCGT 59.964 37.500 0.00 0.00 41.00 5.07
4303 5945 3.806316 ATTTTCGGTCAAAGTAGCGTG 57.194 42.857 0.00 0.00 41.00 5.34
4304 5946 2.512485 TTTCGGTCAAAGTAGCGTGA 57.488 45.000 0.00 0.00 41.00 4.35
4305 5947 2.512485 TTCGGTCAAAGTAGCGTGAA 57.488 45.000 0.00 0.00 41.00 3.18
4306 5948 2.736144 TCGGTCAAAGTAGCGTGAAT 57.264 45.000 0.00 0.00 41.00 2.57
4307 5949 3.853831 TCGGTCAAAGTAGCGTGAATA 57.146 42.857 0.00 0.00 41.00 1.75
4308 5950 3.766151 TCGGTCAAAGTAGCGTGAATAG 58.234 45.455 0.00 0.00 41.00 1.73
4309 5951 3.192001 TCGGTCAAAGTAGCGTGAATAGT 59.808 43.478 0.00 0.00 41.00 2.12
4310 5952 4.395854 TCGGTCAAAGTAGCGTGAATAGTA 59.604 41.667 0.00 0.00 41.00 1.82
4311 5953 5.097529 CGGTCAAAGTAGCGTGAATAGTAA 58.902 41.667 0.00 0.00 35.72 2.24
4312 5954 5.229469 CGGTCAAAGTAGCGTGAATAGTAAG 59.771 44.000 0.00 0.00 35.72 2.34
4313 5955 5.005490 GGTCAAAGTAGCGTGAATAGTAAGC 59.995 44.000 0.00 0.00 0.00 3.09
4314 5956 5.805994 GTCAAAGTAGCGTGAATAGTAAGCT 59.194 40.000 0.00 0.00 41.45 3.74
4315 5957 6.971184 GTCAAAGTAGCGTGAATAGTAAGCTA 59.029 38.462 0.00 0.00 39.14 3.32
4316 5958 7.648510 GTCAAAGTAGCGTGAATAGTAAGCTAT 59.351 37.037 0.00 0.00 41.60 2.97
4317 5959 8.843262 TCAAAGTAGCGTGAATAGTAAGCTATA 58.157 33.333 0.00 0.00 41.60 1.31
4318 5960 9.459640 CAAAGTAGCGTGAATAGTAAGCTATAA 57.540 33.333 0.00 0.00 41.60 0.98
4345 5987 8.986477 AGCAAATAATTTGTATCTTTTTCGCT 57.014 26.923 0.00 0.00 42.56 4.93
4346 5988 8.863049 AGCAAATAATTTGTATCTTTTTCGCTG 58.137 29.630 0.00 0.00 42.56 5.18
4347 5989 8.647226 GCAAATAATTTGTATCTTTTTCGCTGT 58.353 29.630 0.00 0.00 42.56 4.40
4348 5990 9.941991 CAAATAATTTGTATCTTTTTCGCTGTG 57.058 29.630 0.00 0.00 35.94 3.66
4349 5991 9.906660 AAATAATTTGTATCTTTTTCGCTGTGA 57.093 25.926 0.00 0.00 0.00 3.58
4350 5992 9.906660 AATAATTTGTATCTTTTTCGCTGTGAA 57.093 25.926 0.00 0.00 33.85 3.18
4351 5993 7.623268 AATTTGTATCTTTTTCGCTGTGAAC 57.377 32.000 2.62 0.00 35.97 3.18
4352 5994 6.371809 TTTGTATCTTTTTCGCTGTGAACT 57.628 33.333 2.62 0.00 35.97 3.01
4353 5995 5.591643 TGTATCTTTTTCGCTGTGAACTC 57.408 39.130 2.62 0.00 35.97 3.01
4354 5996 3.795561 ATCTTTTTCGCTGTGAACTCG 57.204 42.857 2.62 0.00 35.97 4.18
4355 5997 2.546778 TCTTTTTCGCTGTGAACTCGT 58.453 42.857 2.62 0.00 35.97 4.18
4356 5998 2.933906 TCTTTTTCGCTGTGAACTCGTT 59.066 40.909 2.62 0.00 35.97 3.85
4357 5999 2.730183 TTTTCGCTGTGAACTCGTTG 57.270 45.000 2.62 0.00 35.97 4.10
4358 6000 0.934496 TTTCGCTGTGAACTCGTTGG 59.066 50.000 2.62 0.00 35.97 3.77
4359 6001 0.179094 TTCGCTGTGAACTCGTTGGT 60.179 50.000 0.00 0.00 0.00 3.67
4360 6002 0.179094 TCGCTGTGAACTCGTTGGTT 60.179 50.000 0.00 0.00 0.00 3.67
4361 6003 0.655733 CGCTGTGAACTCGTTGGTTT 59.344 50.000 0.00 0.00 0.00 3.27
4362 6004 1.063469 CGCTGTGAACTCGTTGGTTTT 59.937 47.619 0.00 0.00 0.00 2.43
4363 6005 2.477189 CGCTGTGAACTCGTTGGTTTTT 60.477 45.455 0.00 0.00 0.00 1.94
4389 6031 9.724839 TTTTGGTGAAAATTTATATACTAGCGC 57.275 29.630 0.00 0.00 0.00 5.92
4390 6032 7.112528 TGGTGAAAATTTATATACTAGCGCG 57.887 36.000 0.00 0.00 0.00 6.86
4391 6033 6.013689 GGTGAAAATTTATATACTAGCGCGC 58.986 40.000 26.66 26.66 0.00 6.86
4392 6034 6.347079 GGTGAAAATTTATATACTAGCGCGCA 60.347 38.462 35.10 18.19 0.00 6.09
4393 6035 7.067116 GTGAAAATTTATATACTAGCGCGCAA 58.933 34.615 35.10 15.76 0.00 4.85
4394 6036 7.266335 GTGAAAATTTATATACTAGCGCGCAAG 59.734 37.037 35.10 14.45 43.44 4.01
4395 6037 6.780706 AAATTTATATACTAGCGCGCAAGT 57.219 33.333 35.10 16.01 41.68 3.16
4396 6038 7.878477 AAATTTATATACTAGCGCGCAAGTA 57.122 32.000 35.10 16.32 41.68 2.24
4397 6039 7.878477 AATTTATATACTAGCGCGCAAGTAA 57.122 32.000 35.10 17.51 41.68 2.24
4398 6040 6.922980 TTTATATACTAGCGCGCAAGTAAG 57.077 37.500 35.10 22.35 41.68 2.34
4399 6041 2.865343 ATACTAGCGCGCAAGTAAGT 57.135 45.000 35.10 26.33 41.68 2.24
4400 6042 2.184385 TACTAGCGCGCAAGTAAGTC 57.816 50.000 35.10 0.00 41.68 3.01
4401 6043 0.242825 ACTAGCGCGCAAGTAAGTCA 59.757 50.000 35.10 5.10 41.68 3.41
4402 6044 1.135083 ACTAGCGCGCAAGTAAGTCAT 60.135 47.619 35.10 10.92 41.68 3.06
4403 6045 1.256376 CTAGCGCGCAAGTAAGTCATG 59.744 52.381 35.10 0.00 41.68 3.07
4404 6046 0.670546 AGCGCGCAAGTAAGTCATGT 60.671 50.000 35.10 3.94 41.68 3.21
4405 6047 0.165944 GCGCGCAAGTAAGTCATGTT 59.834 50.000 29.10 0.00 41.68 2.71
4406 6048 1.399727 GCGCGCAAGTAAGTCATGTTT 60.400 47.619 29.10 0.00 41.68 2.83
4407 6049 2.159761 GCGCGCAAGTAAGTCATGTTTA 60.160 45.455 29.10 0.00 41.68 2.01
4408 6050 3.665848 GCGCGCAAGTAAGTCATGTTTAA 60.666 43.478 29.10 0.00 41.68 1.52
4409 6051 4.647964 CGCGCAAGTAAGTCATGTTTAAT 58.352 39.130 8.75 0.00 41.68 1.40
4410 6052 4.723862 CGCGCAAGTAAGTCATGTTTAATC 59.276 41.667 8.75 0.00 41.68 1.75
4411 6053 5.445939 CGCGCAAGTAAGTCATGTTTAATCT 60.446 40.000 8.75 0.00 41.68 2.40
4412 6054 6.237728 CGCGCAAGTAAGTCATGTTTAATCTA 60.238 38.462 8.75 0.00 41.68 1.98
4413 6055 7.461107 GCGCAAGTAAGTCATGTTTAATCTAA 58.539 34.615 0.30 0.00 41.68 2.10
4414 6056 7.960738 GCGCAAGTAAGTCATGTTTAATCTAAA 59.039 33.333 0.30 0.00 41.68 1.85
4415 6057 9.820229 CGCAAGTAAGTCATGTTTAATCTAAAA 57.180 29.630 0.00 0.00 0.00 1.52
4489 6131 6.662414 CCATTTAGGGTGTATATACATGCG 57.338 41.667 18.27 2.73 38.63 4.73
4490 6132 5.584649 CCATTTAGGGTGTATATACATGCGG 59.415 44.000 18.27 7.49 38.63 5.69
4491 6133 4.811969 TTAGGGTGTATATACATGCGGG 57.188 45.455 18.27 0.00 38.63 6.13
4492 6134 2.897350 AGGGTGTATATACATGCGGGA 58.103 47.619 18.27 0.00 38.63 5.14
4493 6135 2.832129 AGGGTGTATATACATGCGGGAG 59.168 50.000 18.27 0.00 38.63 4.30
4505 6147 4.218722 CGGGAGCCAAAGCGTATT 57.781 55.556 0.00 0.00 46.67 1.89
4506 6148 2.477880 CGGGAGCCAAAGCGTATTT 58.522 52.632 0.00 0.00 46.67 1.40
4507 6149 0.808755 CGGGAGCCAAAGCGTATTTT 59.191 50.000 0.00 0.00 46.67 1.82
4508 6150 1.202143 CGGGAGCCAAAGCGTATTTTC 60.202 52.381 0.00 0.00 46.67 2.29
4509 6151 2.092323 GGGAGCCAAAGCGTATTTTCT 58.908 47.619 0.00 0.00 46.67 2.52
4522 6164 6.508777 AGCGTATTTTCTGTAGAATCTCCTC 58.491 40.000 0.00 0.00 33.54 3.71
4535 6177 4.355287 AGAATCTCCTCCCTTTTTGTTCCT 59.645 41.667 0.00 0.00 0.00 3.36
4543 6185 3.709141 TCCCTTTTTGTTCCTCTTTTGGG 59.291 43.478 0.00 0.00 0.00 4.12
4597 6239 0.043637 CCCTACCACTTCCCCCACTA 59.956 60.000 0.00 0.00 0.00 2.74
4598 6240 1.497161 CCTACCACTTCCCCCACTAG 58.503 60.000 0.00 0.00 0.00 2.57
4603 6245 1.212935 CCACTTCCCCCACTAGGAATG 59.787 57.143 0.00 0.00 42.44 2.67
4624 6266 2.748058 ATTCCCACGCCTCGTTGCTT 62.748 55.000 0.00 0.00 38.32 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.400213 ATGGAACGAACTGCAAGGGA 59.600 50.000 0.00 0.00 39.30 4.20
12 13 5.050490 CCTACTAATCCATGGAACGAACTG 58.950 45.833 20.67 7.52 0.00 3.16
18 19 5.990668 AGTTGTCCTACTAATCCATGGAAC 58.009 41.667 20.67 10.28 0.00 3.62
20 21 4.654262 GGAGTTGTCCTACTAATCCATGGA 59.346 45.833 18.88 18.88 37.86 3.41
38 39 2.254546 TCGCACAACAAGATGGAGTT 57.745 45.000 0.00 0.00 0.00 3.01
43 44 4.725359 TGATTTCATCGCACAACAAGATG 58.275 39.130 0.00 0.00 42.11 2.90
44 45 5.337554 CATGATTTCATCGCACAACAAGAT 58.662 37.500 0.00 0.00 33.61 2.40
48 49 2.164017 CCCATGATTTCATCGCACAACA 59.836 45.455 0.00 0.00 33.61 3.33
88 89 7.327275 GTGACGCAAACAACCAAAAATATATGA 59.673 33.333 0.00 0.00 0.00 2.15
89 90 7.328249 AGTGACGCAAACAACCAAAAATATATG 59.672 33.333 0.00 0.00 0.00 1.78
90 91 7.328249 CAGTGACGCAAACAACCAAAAATATAT 59.672 33.333 0.00 0.00 0.00 0.86
92 93 5.461737 CAGTGACGCAAACAACCAAAAATAT 59.538 36.000 0.00 0.00 0.00 1.28
93 94 4.800993 CAGTGACGCAAACAACCAAAAATA 59.199 37.500 0.00 0.00 0.00 1.40
94 95 3.616379 CAGTGACGCAAACAACCAAAAAT 59.384 39.130 0.00 0.00 0.00 1.82
95 96 2.989840 CAGTGACGCAAACAACCAAAAA 59.010 40.909 0.00 0.00 0.00 1.94
99 100 1.431440 GCAGTGACGCAAACAACCA 59.569 52.632 0.00 0.00 0.00 3.67
102 103 3.492051 ACGCAGTGACGCAAACAA 58.508 50.000 0.00 0.00 42.51 2.83
121 122 1.275573 AGTGGGGTTCTAGCGTTCTTC 59.724 52.381 0.00 0.00 0.00 2.87
152 156 8.141909 ACTGGCTTTAAATAAAACAGAGGTTTC 58.858 33.333 17.25 0.00 46.20 2.78
157 161 8.352942 ACTGAACTGGCTTTAAATAAAACAGAG 58.647 33.333 17.25 10.60 35.53 3.35
158 162 8.232913 ACTGAACTGGCTTTAAATAAAACAGA 57.767 30.769 17.25 2.90 35.53 3.41
159 163 9.612620 CTACTGAACTGGCTTTAAATAAAACAG 57.387 33.333 12.21 12.21 36.81 3.16
160 164 9.127277 ACTACTGAACTGGCTTTAAATAAAACA 57.873 29.630 0.00 0.00 0.00 2.83
429 626 8.572828 TTATTATTTGCAACAATTATGAGCCG 57.427 30.769 0.00 0.00 32.68 5.52
442 639 6.014242 TGTCCCAACACCATTATTATTTGCAA 60.014 34.615 0.00 0.00 0.00 4.08
460 657 1.146774 TGGCAGAAATCCTTGTCCCAA 59.853 47.619 0.00 0.00 0.00 4.12
479 676 4.963318 ATGTCATAGTGGACCAGGTATG 57.037 45.455 14.20 14.20 36.97 2.39
515 712 9.678260 AACCAAATAAAGCATGCCATTTTTATA 57.322 25.926 15.66 0.00 0.00 0.98
516 713 8.460428 CAACCAAATAAAGCATGCCATTTTTAT 58.540 29.630 15.66 14.54 0.00 1.40
678 875 5.473504 GCCAAAAGAACTTTACTGATCCTGA 59.526 40.000 0.14 0.00 31.63 3.86
702 899 1.812235 TGACTATGTGCAGCAACTGG 58.188 50.000 0.00 0.00 31.21 4.00
725 933 9.121517 CAGAGATAACAAAACTGCAATAACAAG 57.878 33.333 0.00 0.00 0.00 3.16
800 1008 8.250332 ACAATTGTGAAGTTGTCAAACATTAGT 58.750 29.630 11.07 0.00 38.23 2.24
804 1012 7.903995 AAACAATTGTGAAGTTGTCAAACAT 57.096 28.000 12.82 0.00 38.23 2.71
853 1061 3.808728 TGTGGGAAGTAGCATTATCAGC 58.191 45.455 0.00 0.00 0.00 4.26
897 1107 7.485913 CGAATTATAGCACAAATTCAAGCAAGT 59.514 33.333 14.24 0.00 40.53 3.16
898 1108 7.485913 ACGAATTATAGCACAAATTCAAGCAAG 59.514 33.333 14.24 3.94 40.53 4.01
956 1166 6.677781 TCGCTCCTAAAGATTGTTTAATGG 57.322 37.500 0.00 0.00 0.00 3.16
962 1172 5.294552 GCTATGTTCGCTCCTAAAGATTGTT 59.705 40.000 0.00 0.00 0.00 2.83
995 1205 2.801342 GCATGAGTCGACTCCATTCCTC 60.801 54.545 36.01 15.39 42.20 3.71
1044 1254 2.385803 TCTGGGATTTCTACCGGAGAC 58.614 52.381 9.46 0.00 37.23 3.36
1122 1332 4.512571 GCTGAGTTTTCCATGTTTGCATTT 59.487 37.500 0.00 0.00 31.99 2.32
1140 1350 2.001159 GATGTGTCTGCTTGAGCTGAG 58.999 52.381 12.08 0.00 46.96 3.35
1154 1364 4.081420 GGCCATTAGAGATATCCGATGTGT 60.081 45.833 0.00 0.00 0.00 3.72
1163 1373 3.254960 ACTGGCAGGCCATTAGAGATAT 58.745 45.455 20.34 0.00 46.15 1.63
1224 1434 2.366916 ACTGACTTCCAGAGTTGGTGAG 59.633 50.000 0.00 0.00 45.78 3.51
1233 1443 4.768448 TGATTACCGTTACTGACTTCCAGA 59.232 41.667 0.00 0.00 45.78 3.86
1252 1462 9.577110 CTTGTGTGCATCTATATTTTTGTGATT 57.423 29.630 0.00 0.00 0.00 2.57
1286 1496 0.966875 CAATGTGGCTGCTTGGGCTA 60.967 55.000 0.00 0.00 39.59 3.93
1307 1517 4.946478 ACTGACAGGCCATTAGAGATAC 57.054 45.455 5.01 0.00 0.00 2.24
1389 1599 1.801913 CACGTCGTGCTCTGCTACC 60.802 63.158 13.22 0.00 0.00 3.18
1446 1656 5.006386 GTCTCTGTTGGTCCTGAATTTGAT 58.994 41.667 0.00 0.00 0.00 2.57
1899 2196 2.563179 TCTCTGCGGCTTCTAGTTCTTT 59.437 45.455 0.00 0.00 0.00 2.52
2195 2492 7.378966 TGTCTCTTTCATTGACTAAGGTAGTG 58.621 38.462 0.00 0.00 39.59 2.74
2196 2493 7.451877 TCTGTCTCTTTCATTGACTAAGGTAGT 59.548 37.037 0.00 0.00 42.86 2.73
2465 2762 9.199982 TCAAGATTCTTCTTCAAATCATTTTGC 57.800 29.630 0.00 0.00 40.28 3.68
2522 2819 4.837298 TCCATATAGTCTGCAAGCTCAGAT 59.163 41.667 8.25 1.83 44.04 2.90
2541 2838 5.939764 TCTTTGCACAGTATACTCTCCAT 57.060 39.130 1.26 0.00 0.00 3.41
2643 2940 0.244994 TCCTCGAGCTCTTTCTGTGC 59.755 55.000 12.85 0.00 35.59 4.57
3026 3323 3.260632 TGAGAACAGCACATAACCTGCTA 59.739 43.478 0.00 0.00 43.34 3.49
3047 3344 5.514204 CGCTTTGGATGCTTCTATTTCTTTG 59.486 40.000 0.00 0.00 0.00 2.77
3050 3347 4.265073 ACGCTTTGGATGCTTCTATTTCT 58.735 39.130 0.00 0.00 0.00 2.52
3356 3653 2.294078 CCCCTCGTTTGCCCTCTCT 61.294 63.158 0.00 0.00 0.00 3.10
3599 3896 5.065988 CGGGGTATTTCTCGACAAAAATGAT 59.934 40.000 0.00 0.00 0.00 2.45
3762 4060 5.287674 TGCCCAAAGAATGATTTTTGTGA 57.712 34.783 9.97 0.00 33.52 3.58
3816 4114 5.532406 ACAGAACATCACAGTGCTACATTTT 59.468 36.000 0.00 0.00 0.00 1.82
3819 4117 4.277515 ACAGAACATCACAGTGCTACAT 57.722 40.909 0.00 0.00 0.00 2.29
3820 4118 3.751479 ACAGAACATCACAGTGCTACA 57.249 42.857 0.00 0.00 0.00 2.74
3821 4119 6.102663 AGATAACAGAACATCACAGTGCTAC 58.897 40.000 0.00 0.00 0.00 3.58
3822 4120 6.286240 AGATAACAGAACATCACAGTGCTA 57.714 37.500 0.00 0.00 0.00 3.49
3823 4121 5.157940 AGATAACAGAACATCACAGTGCT 57.842 39.130 0.00 0.00 0.00 4.40
3824 4122 5.869753 AAGATAACAGAACATCACAGTGC 57.130 39.130 0.00 0.00 0.00 4.40
3825 4123 7.148507 GGAGAAAGATAACAGAACATCACAGTG 60.149 40.741 0.00 0.00 0.00 3.66
3826 4124 6.876257 GGAGAAAGATAACAGAACATCACAGT 59.124 38.462 0.00 0.00 0.00 3.55
3831 4538 7.625185 GCAAGTGGAGAAAGATAACAGAACATC 60.625 40.741 0.00 0.00 0.00 3.06
3832 4539 6.150140 GCAAGTGGAGAAAGATAACAGAACAT 59.850 38.462 0.00 0.00 0.00 2.71
3852 4559 0.603975 GAGGCACTTTCCTCGCAAGT 60.604 55.000 0.00 0.00 42.74 3.16
3863 4570 5.417580 TGTAACTCAACAAAAAGAGGCACTT 59.582 36.000 0.00 0.00 41.55 3.16
3904 4611 0.320771 AGCTCAACAGTTGGCCTACG 60.321 55.000 13.52 9.29 0.00 3.51
3905 4612 1.002544 AGAGCTCAACAGTTGGCCTAC 59.997 52.381 17.77 9.54 0.00 3.18
3909 4636 1.597742 TTCAGAGCTCAACAGTTGGC 58.402 50.000 17.77 14.56 0.00 4.52
3943 4670 3.142174 GCTAGGATTAACCATGCCTGAC 58.858 50.000 0.00 0.00 42.04 3.51
3944 4671 2.777114 TGCTAGGATTAACCATGCCTGA 59.223 45.455 0.00 0.00 42.04 3.86
3946 4673 3.139025 ACATGCTAGGATTAACCATGCCT 59.861 43.478 0.00 0.00 42.04 4.75
3953 4680 7.766278 TCTCAGAGAAAACATGCTAGGATTAAC 59.234 37.037 0.00 0.00 0.00 2.01
4011 4775 3.495753 GCCAAACCTGCTTCTTTCATTTG 59.504 43.478 0.00 0.00 0.00 2.32
4013 4777 2.699846 TGCCAAACCTGCTTCTTTCATT 59.300 40.909 0.00 0.00 0.00 2.57
4016 4780 1.000171 CCTGCCAAACCTGCTTCTTTC 60.000 52.381 0.00 0.00 0.00 2.62
4020 4784 0.032540 CAACCTGCCAAACCTGCTTC 59.967 55.000 0.00 0.00 0.00 3.86
4035 5677 3.088532 TGACAGTATTTCCATGCCAACC 58.911 45.455 0.00 0.00 0.00 3.77
4037 5679 4.032960 AGTGACAGTATTTCCATGCCAA 57.967 40.909 0.00 0.00 0.00 4.52
4038 5680 3.719268 AGTGACAGTATTTCCATGCCA 57.281 42.857 0.00 0.00 0.00 4.92
4039 5681 4.576463 CCTAAGTGACAGTATTTCCATGCC 59.424 45.833 0.00 0.00 0.00 4.40
4043 5685 5.783360 TCTTCCCTAAGTGACAGTATTTCCA 59.217 40.000 0.00 0.00 34.13 3.53
4048 5690 6.936968 AAGTTCTTCCCTAAGTGACAGTAT 57.063 37.500 0.00 0.00 34.13 2.12
4049 5691 6.325545 TGAAAGTTCTTCCCTAAGTGACAGTA 59.674 38.462 0.00 0.00 34.13 2.74
4053 5695 5.820947 TGTTGAAAGTTCTTCCCTAAGTGAC 59.179 40.000 0.00 0.00 34.13 3.67
4054 5696 5.996644 TGTTGAAAGTTCTTCCCTAAGTGA 58.003 37.500 0.00 0.00 34.13 3.41
4055 5697 6.884280 ATGTTGAAAGTTCTTCCCTAAGTG 57.116 37.500 0.00 0.00 34.13 3.16
4056 5698 7.290813 AGAATGTTGAAAGTTCTTCCCTAAGT 58.709 34.615 0.00 0.00 34.13 2.24
4057 5699 7.751768 AGAATGTTGAAAGTTCTTCCCTAAG 57.248 36.000 0.00 0.00 0.00 2.18
4058 5700 7.777910 TCAAGAATGTTGAAAGTTCTTCCCTAA 59.222 33.333 3.86 0.00 39.46 2.69
4059 5701 7.287061 TCAAGAATGTTGAAAGTTCTTCCCTA 58.713 34.615 3.86 0.00 39.46 3.53
4060 5702 6.129179 TCAAGAATGTTGAAAGTTCTTCCCT 58.871 36.000 3.86 0.00 39.46 4.20
4061 5703 6.391227 TCAAGAATGTTGAAAGTTCTTCCC 57.609 37.500 3.86 0.00 39.46 3.97
4062 5704 5.917447 GCTCAAGAATGTTGAAAGTTCTTCC 59.083 40.000 0.00 0.00 39.46 3.46
4063 5705 6.498304 TGCTCAAGAATGTTGAAAGTTCTTC 58.502 36.000 0.00 0.00 39.46 2.87
4064 5706 6.455360 TGCTCAAGAATGTTGAAAGTTCTT 57.545 33.333 0.00 1.59 41.48 2.52
4065 5707 6.455360 TTGCTCAAGAATGTTGAAAGTTCT 57.545 33.333 0.00 0.00 33.86 3.01
4066 5708 7.650903 AGAATTGCTCAAGAATGTTGAAAGTTC 59.349 33.333 0.00 0.00 0.00 3.01
4067 5709 7.437267 CAGAATTGCTCAAGAATGTTGAAAGTT 59.563 33.333 0.00 0.00 0.00 2.66
4068 5710 6.921857 CAGAATTGCTCAAGAATGTTGAAAGT 59.078 34.615 0.00 0.00 0.00 2.66
4069 5711 6.365247 CCAGAATTGCTCAAGAATGTTGAAAG 59.635 38.462 0.00 0.00 0.00 2.62
4070 5712 6.183360 ACCAGAATTGCTCAAGAATGTTGAAA 60.183 34.615 0.00 0.00 0.00 2.69
4071 5713 5.302568 ACCAGAATTGCTCAAGAATGTTGAA 59.697 36.000 0.00 0.00 0.00 2.69
4072 5714 4.828939 ACCAGAATTGCTCAAGAATGTTGA 59.171 37.500 0.00 0.00 0.00 3.18
4073 5715 5.130292 ACCAGAATTGCTCAAGAATGTTG 57.870 39.130 0.00 0.00 0.00 3.33
4074 5716 6.240894 TCTACCAGAATTGCTCAAGAATGTT 58.759 36.000 0.00 0.00 0.00 2.71
4075 5717 5.809001 TCTACCAGAATTGCTCAAGAATGT 58.191 37.500 0.00 0.00 0.00 2.71
4076 5718 5.879223 ACTCTACCAGAATTGCTCAAGAATG 59.121 40.000 0.00 0.00 0.00 2.67
4077 5719 6.059787 ACTCTACCAGAATTGCTCAAGAAT 57.940 37.500 0.00 0.00 0.00 2.40
4078 5720 5.247110 AGACTCTACCAGAATTGCTCAAGAA 59.753 40.000 0.00 0.00 0.00 2.52
4079 5721 4.774726 AGACTCTACCAGAATTGCTCAAGA 59.225 41.667 0.00 0.00 0.00 3.02
4080 5722 5.083533 AGACTCTACCAGAATTGCTCAAG 57.916 43.478 0.00 0.00 0.00 3.02
4081 5723 4.380973 CGAGACTCTACCAGAATTGCTCAA 60.381 45.833 0.03 0.00 0.00 3.02
4082 5724 3.129462 CGAGACTCTACCAGAATTGCTCA 59.871 47.826 0.03 0.00 0.00 4.26
4083 5725 3.490078 CCGAGACTCTACCAGAATTGCTC 60.490 52.174 0.03 0.00 0.00 4.26
4084 5726 2.428890 CCGAGACTCTACCAGAATTGCT 59.571 50.000 0.03 0.00 0.00 3.91
4085 5727 2.427453 TCCGAGACTCTACCAGAATTGC 59.573 50.000 0.03 0.00 0.00 3.56
4086 5728 3.067461 CCTCCGAGACTCTACCAGAATTG 59.933 52.174 0.03 0.00 0.00 2.32
4087 5729 3.292460 CCTCCGAGACTCTACCAGAATT 58.708 50.000 0.03 0.00 0.00 2.17
4088 5730 2.423660 CCCTCCGAGACTCTACCAGAAT 60.424 54.545 0.03 0.00 0.00 2.40
4089 5731 1.064611 CCCTCCGAGACTCTACCAGAA 60.065 57.143 0.03 0.00 0.00 3.02
4090 5732 0.547075 CCCTCCGAGACTCTACCAGA 59.453 60.000 0.03 0.00 0.00 3.86
4091 5733 0.466555 CCCCTCCGAGACTCTACCAG 60.467 65.000 0.03 0.00 0.00 4.00
4092 5734 0.917821 TCCCCTCCGAGACTCTACCA 60.918 60.000 0.03 0.00 0.00 3.25
4093 5735 0.258194 TTCCCCTCCGAGACTCTACC 59.742 60.000 0.03 0.00 0.00 3.18
4094 5736 1.340795 TGTTCCCCTCCGAGACTCTAC 60.341 57.143 0.03 0.00 0.00 2.59
4095 5737 0.997363 TGTTCCCCTCCGAGACTCTA 59.003 55.000 0.03 0.00 0.00 2.43
4096 5738 0.336737 ATGTTCCCCTCCGAGACTCT 59.663 55.000 0.03 0.00 0.00 3.24
4097 5739 1.196012 AATGTTCCCCTCCGAGACTC 58.804 55.000 0.00 0.00 0.00 3.36
4098 5740 1.279271 CAAATGTTCCCCTCCGAGACT 59.721 52.381 0.00 0.00 0.00 3.24
4099 5741 1.679032 CCAAATGTTCCCCTCCGAGAC 60.679 57.143 0.00 0.00 0.00 3.36
4100 5742 0.618458 CCAAATGTTCCCCTCCGAGA 59.382 55.000 0.00 0.00 0.00 4.04
4101 5743 0.328258 ACCAAATGTTCCCCTCCGAG 59.672 55.000 0.00 0.00 0.00 4.63
4102 5744 0.774908 AACCAAATGTTCCCCTCCGA 59.225 50.000 0.00 0.00 28.45 4.55
4103 5745 1.173913 GAACCAAATGTTCCCCTCCG 58.826 55.000 0.00 0.00 46.35 4.63
4111 5753 3.603965 TGTACCCAGGAACCAAATGTT 57.396 42.857 0.00 0.00 40.81 2.71
4112 5754 3.825908 ATGTACCCAGGAACCAAATGT 57.174 42.857 0.00 0.00 0.00 2.71
4113 5755 5.200483 ACATATGTACCCAGGAACCAAATG 58.800 41.667 6.56 0.00 0.00 2.32
4114 5756 5.466127 ACATATGTACCCAGGAACCAAAT 57.534 39.130 6.56 0.00 0.00 2.32
4115 5757 4.938575 ACATATGTACCCAGGAACCAAA 57.061 40.909 6.56 0.00 0.00 3.28
4116 5758 5.362105 GTACATATGTACCCAGGAACCAA 57.638 43.478 28.48 0.00 43.73 3.67
4157 5799 9.911138 AAATTTTTGACTTTTTGTTGAATTGCT 57.089 22.222 0.00 0.00 0.00 3.91
4163 5805 9.265901 TGTCAGAAATTTTTGACTTTTTGTTGA 57.734 25.926 30.69 13.30 43.15 3.18
4164 5806 9.875675 TTGTCAGAAATTTTTGACTTTTTGTTG 57.124 25.926 30.69 0.00 43.15 3.33
4193 5835 9.898152 AATGAAGGGTCAAGTTTATTTCAAAAA 57.102 25.926 0.00 0.00 37.30 1.94
4194 5836 9.898152 AAATGAAGGGTCAAGTTTATTTCAAAA 57.102 25.926 0.00 0.00 37.30 2.44
4195 5837 9.898152 AAAATGAAGGGTCAAGTTTATTTCAAA 57.102 25.926 0.00 0.00 37.30 2.69
4222 5864 9.847224 TCTTCTTGTGGAACTTTTCTTACTATT 57.153 29.630 0.00 0.00 38.04 1.73
4223 5865 9.847224 TTCTTCTTGTGGAACTTTTCTTACTAT 57.153 29.630 0.00 0.00 38.04 2.12
4224 5866 9.675464 TTTCTTCTTGTGGAACTTTTCTTACTA 57.325 29.630 0.00 0.00 38.04 1.82
4225 5867 8.575649 TTTCTTCTTGTGGAACTTTTCTTACT 57.424 30.769 0.00 0.00 38.04 2.24
4226 5868 9.803315 ATTTTCTTCTTGTGGAACTTTTCTTAC 57.197 29.630 0.00 0.00 38.04 2.34
4228 5870 9.371136 GAATTTTCTTCTTGTGGAACTTTTCTT 57.629 29.630 0.00 0.00 38.04 2.52
4229 5871 7.981789 GGAATTTTCTTCTTGTGGAACTTTTCT 59.018 33.333 0.00 0.00 38.04 2.52
4230 5872 7.981789 AGGAATTTTCTTCTTGTGGAACTTTTC 59.018 33.333 0.00 0.00 38.04 2.29
4231 5873 7.851228 AGGAATTTTCTTCTTGTGGAACTTTT 58.149 30.769 0.00 0.00 38.04 2.27
4232 5874 7.343057 AGAGGAATTTTCTTCTTGTGGAACTTT 59.657 33.333 0.00 0.00 40.25 2.66
4233 5875 6.836007 AGAGGAATTTTCTTCTTGTGGAACTT 59.164 34.615 0.00 0.00 40.25 2.66
4234 5876 6.368805 AGAGGAATTTTCTTCTTGTGGAACT 58.631 36.000 0.00 0.00 40.25 3.01
4235 5877 6.641169 AGAGGAATTTTCTTCTTGTGGAAC 57.359 37.500 0.00 0.00 40.25 3.62
4243 5885 7.830099 ACATGTCAAAGAGGAATTTTCTTCT 57.170 32.000 0.00 0.00 44.36 2.85
4244 5886 8.877808 AAACATGTCAAAGAGGAATTTTCTTC 57.122 30.769 0.00 0.00 33.92 2.87
4273 5915 7.899178 ACTTTGACCGAAAATTTGTCTTTTT 57.101 28.000 8.19 0.00 0.00 1.94
4274 5916 7.222031 GCTACTTTGACCGAAAATTTGTCTTTT 59.778 33.333 8.19 0.00 0.00 2.27
4275 5917 6.695713 GCTACTTTGACCGAAAATTTGTCTTT 59.304 34.615 8.19 0.00 0.00 2.52
4276 5918 6.206498 GCTACTTTGACCGAAAATTTGTCTT 58.794 36.000 8.19 0.00 0.00 3.01
4277 5919 5.560183 CGCTACTTTGACCGAAAATTTGTCT 60.560 40.000 8.19 0.00 0.00 3.41
4278 5920 4.611366 CGCTACTTTGACCGAAAATTTGTC 59.389 41.667 0.00 0.00 0.00 3.18
4279 5921 4.035909 ACGCTACTTTGACCGAAAATTTGT 59.964 37.500 0.00 0.00 0.00 2.83
4280 5922 4.378616 CACGCTACTTTGACCGAAAATTTG 59.621 41.667 0.00 0.00 0.00 2.32
4281 5923 4.273969 TCACGCTACTTTGACCGAAAATTT 59.726 37.500 0.00 0.00 0.00 1.82
4282 5924 3.810941 TCACGCTACTTTGACCGAAAATT 59.189 39.130 0.00 0.00 0.00 1.82
4283 5925 3.395639 TCACGCTACTTTGACCGAAAAT 58.604 40.909 0.00 0.00 0.00 1.82
4284 5926 2.823984 TCACGCTACTTTGACCGAAAA 58.176 42.857 0.00 0.00 0.00 2.29
4285 5927 2.512485 TCACGCTACTTTGACCGAAA 57.488 45.000 0.00 0.00 0.00 3.46
4286 5928 2.512485 TTCACGCTACTTTGACCGAA 57.488 45.000 0.00 0.00 0.00 4.30
4287 5929 2.736144 ATTCACGCTACTTTGACCGA 57.264 45.000 0.00 0.00 0.00 4.69
4288 5930 3.508762 ACTATTCACGCTACTTTGACCG 58.491 45.455 0.00 0.00 0.00 4.79
4289 5931 5.005490 GCTTACTATTCACGCTACTTTGACC 59.995 44.000 0.00 0.00 0.00 4.02
4290 5932 5.805994 AGCTTACTATTCACGCTACTTTGAC 59.194 40.000 0.00 0.00 0.00 3.18
4291 5933 5.962433 AGCTTACTATTCACGCTACTTTGA 58.038 37.500 0.00 0.00 0.00 2.69
4292 5934 7.932120 ATAGCTTACTATTCACGCTACTTTG 57.068 36.000 0.00 0.00 35.47 2.77
4320 5962 8.863049 CAGCGAAAAAGATACAAATTATTTGCT 58.137 29.630 16.57 5.46 44.39 3.91
4321 5963 8.647226 ACAGCGAAAAAGATACAAATTATTTGC 58.353 29.630 16.57 2.15 44.39 3.68
4322 5964 9.941991 CACAGCGAAAAAGATACAAATTATTTG 57.058 29.630 15.25 15.25 45.95 2.32
4323 5965 9.906660 TCACAGCGAAAAAGATACAAATTATTT 57.093 25.926 0.00 0.00 0.00 1.40
4324 5966 9.906660 TTCACAGCGAAAAAGATACAAATTATT 57.093 25.926 0.00 0.00 0.00 1.40
4325 5967 9.341899 GTTCACAGCGAAAAAGATACAAATTAT 57.658 29.630 0.00 0.00 34.69 1.28
4326 5968 8.564574 AGTTCACAGCGAAAAAGATACAAATTA 58.435 29.630 0.00 0.00 34.69 1.40
4327 5969 7.425606 AGTTCACAGCGAAAAAGATACAAATT 58.574 30.769 0.00 0.00 34.69 1.82
4328 5970 6.970484 AGTTCACAGCGAAAAAGATACAAAT 58.030 32.000 0.00 0.00 34.69 2.32
4329 5971 6.371809 AGTTCACAGCGAAAAAGATACAAA 57.628 33.333 0.00 0.00 34.69 2.83
4330 5972 5.333035 CGAGTTCACAGCGAAAAAGATACAA 60.333 40.000 0.00 0.00 34.69 2.41
4331 5973 4.149922 CGAGTTCACAGCGAAAAAGATACA 59.850 41.667 0.00 0.00 34.69 2.29
4332 5974 4.150098 ACGAGTTCACAGCGAAAAAGATAC 59.850 41.667 0.00 0.00 34.69 2.24
4333 5975 4.304110 ACGAGTTCACAGCGAAAAAGATA 58.696 39.130 0.00 0.00 34.69 1.98
4334 5976 3.131396 ACGAGTTCACAGCGAAAAAGAT 58.869 40.909 0.00 0.00 34.69 2.40
4335 5977 2.546778 ACGAGTTCACAGCGAAAAAGA 58.453 42.857 0.00 0.00 34.69 2.52
4336 5978 3.029074 CAACGAGTTCACAGCGAAAAAG 58.971 45.455 0.00 0.00 34.69 2.27
4337 5979 2.223157 CCAACGAGTTCACAGCGAAAAA 60.223 45.455 0.00 0.00 34.69 1.94
4338 5980 1.329292 CCAACGAGTTCACAGCGAAAA 59.671 47.619 0.00 0.00 34.69 2.29
4339 5981 0.934496 CCAACGAGTTCACAGCGAAA 59.066 50.000 0.00 0.00 34.69 3.46
4340 5982 0.179094 ACCAACGAGTTCACAGCGAA 60.179 50.000 0.00 0.00 0.00 4.70
4341 5983 0.179094 AACCAACGAGTTCACAGCGA 60.179 50.000 0.00 0.00 0.00 4.93
4342 5984 0.655733 AAACCAACGAGTTCACAGCG 59.344 50.000 0.00 0.00 0.00 5.18
4343 5985 2.844122 AAAACCAACGAGTTCACAGC 57.156 45.000 0.00 0.00 0.00 4.40
4363 6005 9.724839 GCGCTAGTATATAAATTTTCACCAAAA 57.275 29.630 0.00 0.00 35.92 2.44
4364 6006 8.065407 CGCGCTAGTATATAAATTTTCACCAAA 58.935 33.333 5.56 0.00 0.00 3.28
4365 6007 7.569297 CGCGCTAGTATATAAATTTTCACCAA 58.431 34.615 5.56 0.00 0.00 3.67
4366 6008 6.347079 GCGCGCTAGTATATAAATTTTCACCA 60.347 38.462 26.67 0.00 0.00 4.17
4367 6009 6.013689 GCGCGCTAGTATATAAATTTTCACC 58.986 40.000 26.67 0.00 0.00 4.02
4368 6010 6.586751 TGCGCGCTAGTATATAAATTTTCAC 58.413 36.000 33.29 0.00 0.00 3.18
4369 6011 6.772770 TGCGCGCTAGTATATAAATTTTCA 57.227 33.333 33.29 1.08 0.00 2.69
4370 6012 7.288672 ACTTGCGCGCTAGTATATAAATTTTC 58.711 34.615 39.45 3.55 30.83 2.29
4371 6013 7.186021 ACTTGCGCGCTAGTATATAAATTTT 57.814 32.000 39.45 15.89 30.83 1.82
4372 6014 6.780706 ACTTGCGCGCTAGTATATAAATTT 57.219 33.333 39.45 16.38 30.83 1.82
4373 6015 7.597743 ACTTACTTGCGCGCTAGTATATAAATT 59.402 33.333 40.93 25.77 35.10 1.82
4374 6016 7.088905 ACTTACTTGCGCGCTAGTATATAAAT 58.911 34.615 40.93 24.28 35.10 1.40
4375 6017 6.441274 ACTTACTTGCGCGCTAGTATATAAA 58.559 36.000 40.93 30.70 35.10 1.40
4376 6018 6.005583 ACTTACTTGCGCGCTAGTATATAA 57.994 37.500 40.93 30.99 35.10 0.98
4377 6019 5.179929 TGACTTACTTGCGCGCTAGTATATA 59.820 40.000 40.93 30.04 35.10 0.86
4378 6020 4.023450 TGACTTACTTGCGCGCTAGTATAT 60.023 41.667 40.93 33.55 35.10 0.86
4379 6021 3.313249 TGACTTACTTGCGCGCTAGTATA 59.687 43.478 40.93 31.36 35.10 1.47
4380 6022 2.098607 TGACTTACTTGCGCGCTAGTAT 59.901 45.455 40.93 31.99 35.10 2.12
4381 6023 1.469703 TGACTTACTTGCGCGCTAGTA 59.530 47.619 38.74 38.74 34.25 1.82
4382 6024 0.242825 TGACTTACTTGCGCGCTAGT 59.757 50.000 40.68 40.68 36.18 2.57
4383 6025 1.256376 CATGACTTACTTGCGCGCTAG 59.744 52.381 34.97 34.97 0.00 3.42
4384 6026 1.277326 CATGACTTACTTGCGCGCTA 58.723 50.000 33.29 24.65 0.00 4.26
4385 6027 0.670546 ACATGACTTACTTGCGCGCT 60.671 50.000 33.29 15.25 0.00 5.92
4386 6028 0.165944 AACATGACTTACTTGCGCGC 59.834 50.000 27.26 27.26 0.00 6.86
4387 6029 2.594529 AAACATGACTTACTTGCGCG 57.405 45.000 0.00 0.00 0.00 6.86
4388 6030 5.869350 AGATTAAACATGACTTACTTGCGC 58.131 37.500 0.00 0.00 0.00 6.09
4389 6031 9.820229 TTTTAGATTAAACATGACTTACTTGCG 57.180 29.630 0.00 0.00 0.00 4.85
4466 6108 5.584649 CCGCATGTATATACACCCTAAATGG 59.415 44.000 17.69 7.74 39.30 3.16
4467 6109 5.584649 CCCGCATGTATATACACCCTAAATG 59.415 44.000 17.69 11.11 39.30 2.32
4468 6110 5.486063 TCCCGCATGTATATACACCCTAAAT 59.514 40.000 17.69 0.00 39.30 1.40
4469 6111 4.839550 TCCCGCATGTATATACACCCTAAA 59.160 41.667 17.69 0.82 39.30 1.85
4470 6112 4.418359 TCCCGCATGTATATACACCCTAA 58.582 43.478 17.69 0.33 39.30 2.69
4471 6113 4.021229 CTCCCGCATGTATATACACCCTA 58.979 47.826 17.69 1.79 39.30 3.53
4472 6114 2.832129 CTCCCGCATGTATATACACCCT 59.168 50.000 17.69 0.00 39.30 4.34
4473 6115 2.677037 GCTCCCGCATGTATATACACCC 60.677 54.545 17.69 10.44 39.30 4.61
4474 6116 2.618053 GCTCCCGCATGTATATACACC 58.382 52.381 17.69 10.77 39.30 4.16
4475 6117 2.028476 TGGCTCCCGCATGTATATACAC 60.028 50.000 17.69 5.64 39.30 2.90
4476 6118 2.252714 TGGCTCCCGCATGTATATACA 58.747 47.619 17.65 17.65 40.98 2.29
4477 6119 3.328382 TTGGCTCCCGCATGTATATAC 57.672 47.619 5.89 5.89 38.10 1.47
4478 6120 3.868369 GCTTTGGCTCCCGCATGTATATA 60.868 47.826 0.00 0.00 38.10 0.86
4479 6121 2.783135 CTTTGGCTCCCGCATGTATAT 58.217 47.619 0.00 0.00 38.10 0.86
4480 6122 1.813862 GCTTTGGCTCCCGCATGTATA 60.814 52.381 0.00 0.00 38.10 1.47
4481 6123 1.103398 GCTTTGGCTCCCGCATGTAT 61.103 55.000 0.00 0.00 38.10 2.29
4482 6124 1.748879 GCTTTGGCTCCCGCATGTA 60.749 57.895 0.00 0.00 38.10 2.29
4483 6125 3.064324 GCTTTGGCTCCCGCATGT 61.064 61.111 0.00 0.00 38.10 3.21
4484 6126 4.183686 CGCTTTGGCTCCCGCATG 62.184 66.667 0.00 0.00 38.10 4.06
4485 6127 2.608970 ATACGCTTTGGCTCCCGCAT 62.609 55.000 0.00 0.00 38.10 4.73
4486 6128 2.813226 AATACGCTTTGGCTCCCGCA 62.813 55.000 0.00 0.00 38.10 5.69
4487 6129 1.654023 AAATACGCTTTGGCTCCCGC 61.654 55.000 0.00 0.00 36.09 6.13
4488 6130 0.808755 AAAATACGCTTTGGCTCCCG 59.191 50.000 0.00 0.00 36.09 5.14
4489 6131 2.092323 AGAAAATACGCTTTGGCTCCC 58.908 47.619 0.00 0.00 36.09 4.30
4490 6132 2.488153 ACAGAAAATACGCTTTGGCTCC 59.512 45.455 0.00 0.00 36.09 4.70
4491 6133 3.831715 ACAGAAAATACGCTTTGGCTC 57.168 42.857 0.00 0.00 36.09 4.70
4492 6134 4.575885 TCTACAGAAAATACGCTTTGGCT 58.424 39.130 0.00 0.00 36.09 4.75
4493 6135 4.939509 TCTACAGAAAATACGCTTTGGC 57.060 40.909 0.00 0.00 0.00 4.52
4494 6136 7.308782 AGATTCTACAGAAAATACGCTTTGG 57.691 36.000 0.00 0.00 37.61 3.28
4495 6137 7.278868 AGGAGATTCTACAGAAAATACGCTTTG 59.721 37.037 0.00 0.00 37.61 2.77
4496 6138 7.331791 AGGAGATTCTACAGAAAATACGCTTT 58.668 34.615 0.00 0.00 37.61 3.51
4497 6139 6.879400 AGGAGATTCTACAGAAAATACGCTT 58.121 36.000 0.00 0.00 37.61 4.68
4498 6140 6.461788 GGAGGAGATTCTACAGAAAATACGCT 60.462 42.308 0.00 0.00 37.61 5.07
4499 6141 5.692654 GGAGGAGATTCTACAGAAAATACGC 59.307 44.000 0.00 0.00 37.61 4.42
4500 6142 6.041069 AGGGAGGAGATTCTACAGAAAATACG 59.959 42.308 0.00 0.00 37.61 3.06
4501 6143 7.368198 AGGGAGGAGATTCTACAGAAAATAC 57.632 40.000 0.00 0.00 37.61 1.89
4502 6144 7.996758 AAGGGAGGAGATTCTACAGAAAATA 57.003 36.000 0.00 0.00 37.61 1.40
4503 6145 6.899892 AAGGGAGGAGATTCTACAGAAAAT 57.100 37.500 0.00 0.00 37.61 1.82
4504 6146 6.704056 AAAGGGAGGAGATTCTACAGAAAA 57.296 37.500 0.00 0.00 37.61 2.29
4505 6147 6.704056 AAAAGGGAGGAGATTCTACAGAAA 57.296 37.500 0.00 0.00 37.61 2.52
4506 6148 6.044404 ACAAAAAGGGAGGAGATTCTACAGAA 59.956 38.462 0.00 0.00 38.56 3.02
4507 6149 5.548056 ACAAAAAGGGAGGAGATTCTACAGA 59.452 40.000 0.00 0.00 0.00 3.41
4508 6150 5.810095 ACAAAAAGGGAGGAGATTCTACAG 58.190 41.667 0.00 0.00 0.00 2.74
4509 6151 5.843019 ACAAAAAGGGAGGAGATTCTACA 57.157 39.130 0.00 0.00 0.00 2.74
4522 6164 3.454447 ACCCAAAAGAGGAACAAAAAGGG 59.546 43.478 0.00 0.00 38.52 3.95
4535 6177 3.129638 CGTTGAAAGACCAACCCAAAAGA 59.870 43.478 0.00 0.00 42.42 2.52
4543 6185 4.065789 AGATTCTCCGTTGAAAGACCAAC 58.934 43.478 0.00 0.00 42.09 3.77
4574 6216 2.680370 GGGGAAGTGGTAGGGCCTG 61.680 68.421 18.53 0.00 38.35 4.85
4598 6240 4.688619 ACGAGGCGTGGGAATACATTCC 62.689 54.545 11.85 11.85 43.33 3.01
4603 6245 1.702491 GCAACGAGGCGTGGGAATAC 61.702 60.000 0.00 0.00 39.99 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.