Multiple sequence alignment - TraesCS2B01G191600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G191600 chr2B 100.000 2807 0 0 1 2807 166811439 166808633 0.000000e+00 5184.0
1 TraesCS2B01G191600 chr2B 93.220 354 10 3 14 366 166836592 166836932 2.490000e-140 508.0
2 TraesCS2B01G191600 chr2B 90.769 65 3 3 367 429 785893240 785893177 1.790000e-12 84.2
3 TraesCS2B01G191600 chr2B 93.878 49 3 0 373 421 109928181 109928133 1.080000e-09 75.0
4 TraesCS2B01G191600 chr2A 90.395 2124 147 19 695 2806 117761513 117759435 0.000000e+00 2739.0
5 TraesCS2B01G191600 chr2A 88.372 258 24 2 420 676 117761824 117761572 3.510000e-79 305.0
6 TraesCS2B01G191600 chr2A 89.062 64 4 3 367 428 653371988 653371926 3.000000e-10 76.8
7 TraesCS2B01G191600 chr2D 90.096 1767 88 24 503 2244 116591492 116589788 0.000000e+00 2213.0
8 TraesCS2B01G191600 chr2D 87.194 531 64 3 2279 2806 116589784 116589255 4.000000e-168 601.0
9 TraesCS2B01G191600 chr5B 95.935 369 14 1 1 368 347394528 347394896 5.180000e-167 597.0
10 TraesCS2B01G191600 chr5B 94.879 371 16 2 1 368 36407878 36408248 6.740000e-161 577.0
11 TraesCS2B01G191600 chr5B 87.302 63 5 3 367 427 18347655 18347594 5.020000e-08 69.4
12 TraesCS2B01G191600 chr5D 95.148 371 16 2 1 369 390546746 390546376 4.030000e-163 584.0
13 TraesCS2B01G191600 chr5D 90.728 151 12 2 104 253 546306116 546306265 1.710000e-47 200.0
14 TraesCS2B01G191600 chr5D 81.416 113 21 0 2666 2778 286950030 286950142 2.980000e-15 93.5
15 TraesCS2B01G191600 chr7B 95.389 347 13 3 14 358 34166030 34166375 1.470000e-152 549.0
16 TraesCS2B01G191600 chr6B 94.118 357 17 4 1 355 413939863 413940217 8.850000e-150 540.0
17 TraesCS2B01G191600 chr1D 92.973 370 10 5 1 366 481449935 481449578 2.480000e-145 525.0
18 TraesCS2B01G191600 chr1D 91.071 56 1 4 371 423 203751623 203751569 3.880000e-09 73.1
19 TraesCS2B01G191600 chr6D 88.158 152 15 2 104 254 427931 427782 7.990000e-41 178.0
20 TraesCS2B01G191600 chr1A 88.710 62 4 3 367 426 99872676 99872616 3.880000e-09 73.1
21 TraesCS2B01G191600 chr3D 89.286 56 5 1 367 421 140428561 140428506 5.020000e-08 69.4
22 TraesCS2B01G191600 chr7D 86.154 65 5 4 367 429 40156452 40156514 1.800000e-07 67.6
23 TraesCS2B01G191600 chr6A 85.246 61 8 1 367 426 612303190 612303130 8.400000e-06 62.1
24 TraesCS2B01G191600 chr7A 100.000 31 0 0 1 31 338004687 338004657 1.090000e-04 58.4
25 TraesCS2B01G191600 chr7A 100.000 31 0 0 1 31 340165263 340165293 1.090000e-04 58.4
26 TraesCS2B01G191600 chr4A 100.000 30 0 0 2322 2351 555936206 555936177 3.910000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G191600 chr2B 166808633 166811439 2806 True 5184 5184 100.0000 1 2807 1 chr2B.!!$R2 2806
1 TraesCS2B01G191600 chr2A 117759435 117761824 2389 True 1522 2739 89.3835 420 2806 2 chr2A.!!$R2 2386
2 TraesCS2B01G191600 chr2D 116589255 116591492 2237 True 1407 2213 88.6450 503 2806 2 chr2D.!!$R1 2303

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 821 0.032678 AGTCTGAGCACGACCTTGTG 59.967 55.0 0.0 0.0 42.81 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2494 2553 0.234106 CATTGCGAGCGCTAATCTGG 59.766 55.0 11.5 0.0 42.51 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.704974 CGATTGCGTTGCGTATAACA 57.295 45.000 0.00 0.00 0.00 2.41
25 26 2.350616 CGATTGCGTTGCGTATAACAC 58.649 47.619 0.00 0.00 0.00 3.32
26 27 2.222618 CGATTGCGTTGCGTATAACACA 60.223 45.455 0.00 0.00 0.00 3.72
27 28 3.543265 CGATTGCGTTGCGTATAACACAT 60.543 43.478 0.00 0.00 0.00 3.21
28 29 3.815337 TTGCGTTGCGTATAACACATT 57.185 38.095 0.00 0.00 0.00 2.71
29 30 3.110593 TGCGTTGCGTATAACACATTG 57.889 42.857 0.00 0.00 0.00 2.82
30 31 2.480802 TGCGTTGCGTATAACACATTGT 59.519 40.909 0.00 0.00 0.00 2.71
31 32 3.678548 TGCGTTGCGTATAACACATTGTA 59.321 39.130 0.00 0.00 0.00 2.41
32 33 4.151867 TGCGTTGCGTATAACACATTGTAA 59.848 37.500 0.00 0.00 0.00 2.41
33 34 5.080731 GCGTTGCGTATAACACATTGTAAA 58.919 37.500 0.00 0.00 0.00 2.01
34 35 5.564504 GCGTTGCGTATAACACATTGTAAAA 59.435 36.000 0.00 0.00 0.00 1.52
35 36 6.086502 GCGTTGCGTATAACACATTGTAAAAA 59.913 34.615 0.00 0.00 0.00 1.94
92 93 3.605946 AAAAAGGTGGGAGTGCACA 57.394 47.368 21.04 0.00 0.00 4.57
93 94 2.086610 AAAAAGGTGGGAGTGCACAT 57.913 45.000 21.04 3.82 0.00 3.21
94 95 2.969821 AAAAGGTGGGAGTGCACATA 57.030 45.000 21.04 0.00 0.00 2.29
95 96 3.456380 AAAAGGTGGGAGTGCACATAT 57.544 42.857 21.04 0.00 0.00 1.78
96 97 4.584638 AAAAGGTGGGAGTGCACATATA 57.415 40.909 21.04 0.00 0.00 0.86
97 98 3.845781 AAGGTGGGAGTGCACATATAG 57.154 47.619 21.04 0.00 0.00 1.31
98 99 2.764269 AGGTGGGAGTGCACATATAGT 58.236 47.619 21.04 0.00 0.00 2.12
99 100 2.700897 AGGTGGGAGTGCACATATAGTC 59.299 50.000 21.04 6.28 0.00 2.59
100 101 2.434336 GGTGGGAGTGCACATATAGTCA 59.566 50.000 21.04 4.40 0.00 3.41
101 102 3.493350 GGTGGGAGTGCACATATAGTCAG 60.493 52.174 21.04 0.00 0.00 3.51
102 103 3.133003 GTGGGAGTGCACATATAGTCAGT 59.867 47.826 21.04 0.00 0.00 3.41
103 104 4.341235 GTGGGAGTGCACATATAGTCAGTA 59.659 45.833 21.04 0.00 0.00 2.74
104 105 4.341235 TGGGAGTGCACATATAGTCAGTAC 59.659 45.833 21.04 0.00 0.00 2.73
105 106 4.341235 GGGAGTGCACATATAGTCAGTACA 59.659 45.833 21.04 0.00 0.00 2.90
106 107 5.163447 GGGAGTGCACATATAGTCAGTACAA 60.163 44.000 21.04 0.00 0.00 2.41
107 108 6.463049 GGGAGTGCACATATAGTCAGTACAAT 60.463 42.308 21.04 0.00 0.00 2.71
108 109 6.986817 GGAGTGCACATATAGTCAGTACAATT 59.013 38.462 21.04 0.00 0.00 2.32
109 110 7.042456 GGAGTGCACATATAGTCAGTACAATTG 60.042 40.741 21.04 3.24 0.00 2.32
110 111 6.258727 AGTGCACATATAGTCAGTACAATTGC 59.741 38.462 21.04 0.00 0.00 3.56
111 112 6.037062 GTGCACATATAGTCAGTACAATTGCA 59.963 38.462 13.17 0.00 32.93 4.08
112 113 6.037062 TGCACATATAGTCAGTACAATTGCAC 59.963 38.462 5.05 2.43 30.50 4.57
113 114 6.258727 GCACATATAGTCAGTACAATTGCACT 59.741 38.462 5.44 5.44 0.00 4.40
114 115 7.624661 CACATATAGTCAGTACAATTGCACTG 58.375 38.462 26.54 26.54 42.88 3.66
115 116 6.258727 ACATATAGTCAGTACAATTGCACTGC 59.741 38.462 27.32 22.25 41.58 4.40
116 117 1.800586 AGTCAGTACAATTGCACTGCG 59.199 47.619 27.32 10.92 41.58 5.18
117 118 1.531149 GTCAGTACAATTGCACTGCGT 59.469 47.619 27.32 1.19 41.58 5.24
118 119 2.734606 GTCAGTACAATTGCACTGCGTA 59.265 45.455 27.32 12.74 41.58 4.42
119 120 3.370978 GTCAGTACAATTGCACTGCGTAT 59.629 43.478 27.32 0.00 41.58 3.06
120 121 4.565166 GTCAGTACAATTGCACTGCGTATA 59.435 41.667 27.32 12.11 41.58 1.47
121 122 5.062934 GTCAGTACAATTGCACTGCGTATAA 59.937 40.000 27.32 11.49 41.58 0.98
122 123 5.062934 TCAGTACAATTGCACTGCGTATAAC 59.937 40.000 27.32 2.08 41.58 1.89
123 124 4.932799 AGTACAATTGCACTGCGTATAACA 59.067 37.500 10.61 0.00 0.00 2.41
124 125 4.078363 ACAATTGCACTGCGTATAACAC 57.922 40.909 5.05 0.00 0.00 3.32
125 126 3.500299 ACAATTGCACTGCGTATAACACA 59.500 39.130 5.05 0.00 0.00 3.72
126 127 4.155826 ACAATTGCACTGCGTATAACACAT 59.844 37.500 5.05 0.00 0.00 3.21
127 128 4.536364 ATTGCACTGCGTATAACACATC 57.464 40.909 0.00 0.00 0.00 3.06
128 129 1.923864 TGCACTGCGTATAACACATCG 59.076 47.619 0.00 0.00 0.00 3.84
129 130 1.924524 GCACTGCGTATAACACATCGT 59.075 47.619 0.00 0.00 0.00 3.73
130 131 2.285026 GCACTGCGTATAACACATCGTG 60.285 50.000 0.00 0.00 39.75 4.35
141 142 1.798223 ACACATCGTGTTGTCATTCGG 59.202 47.619 0.00 0.00 45.08 4.30
142 143 2.065512 CACATCGTGTTGTCATTCGGA 58.934 47.619 0.00 0.00 0.00 4.55
143 144 2.672874 CACATCGTGTTGTCATTCGGAT 59.327 45.455 0.00 0.00 0.00 4.18
144 145 3.862845 CACATCGTGTTGTCATTCGGATA 59.137 43.478 0.00 0.00 0.00 2.59
145 146 4.328712 CACATCGTGTTGTCATTCGGATAA 59.671 41.667 0.00 0.00 0.00 1.75
146 147 5.006649 CACATCGTGTTGTCATTCGGATAAT 59.993 40.000 0.00 0.00 0.00 1.28
147 148 5.006649 ACATCGTGTTGTCATTCGGATAATG 59.993 40.000 0.00 0.00 0.00 1.90
148 149 3.868661 TCGTGTTGTCATTCGGATAATGG 59.131 43.478 0.00 0.00 0.00 3.16
149 150 3.546020 CGTGTTGTCATTCGGATAATGGC 60.546 47.826 0.00 0.00 33.14 4.40
150 151 3.376859 GTGTTGTCATTCGGATAATGGCA 59.623 43.478 1.10 1.10 40.12 4.92
151 152 3.627123 TGTTGTCATTCGGATAATGGCAG 59.373 43.478 5.31 0.00 42.37 4.85
152 153 3.558931 TGTCATTCGGATAATGGCAGT 57.441 42.857 1.10 0.00 37.34 4.40
153 154 3.205338 TGTCATTCGGATAATGGCAGTG 58.795 45.455 0.00 0.00 37.34 3.66
154 155 3.118445 TGTCATTCGGATAATGGCAGTGA 60.118 43.478 0.00 0.00 37.34 3.41
155 156 3.248602 GTCATTCGGATAATGGCAGTGAC 59.751 47.826 0.00 0.00 32.80 3.67
156 157 3.118445 TCATTCGGATAATGGCAGTGACA 60.118 43.478 0.00 0.00 0.00 3.58
157 158 2.602257 TCGGATAATGGCAGTGACAG 57.398 50.000 4.25 0.00 0.00 3.51
158 159 1.138859 TCGGATAATGGCAGTGACAGG 59.861 52.381 4.25 0.00 0.00 4.00
159 160 1.134401 CGGATAATGGCAGTGACAGGT 60.134 52.381 4.25 0.00 0.00 4.00
160 161 2.292267 GGATAATGGCAGTGACAGGTG 58.708 52.381 4.25 0.00 0.00 4.00
161 162 2.356125 GGATAATGGCAGTGACAGGTGT 60.356 50.000 4.25 0.00 0.00 4.16
162 163 2.949177 TAATGGCAGTGACAGGTGTT 57.051 45.000 4.25 0.00 0.00 3.32
163 164 2.071778 AATGGCAGTGACAGGTGTTT 57.928 45.000 4.25 0.00 0.00 2.83
164 165 2.071778 ATGGCAGTGACAGGTGTTTT 57.928 45.000 4.25 0.00 0.00 2.43
165 166 1.102154 TGGCAGTGACAGGTGTTTTG 58.898 50.000 0.00 0.00 0.00 2.44
166 167 0.249031 GGCAGTGACAGGTGTTTTGC 60.249 55.000 0.00 6.10 0.00 3.68
167 168 0.740737 GCAGTGACAGGTGTTTTGCT 59.259 50.000 0.00 0.00 0.00 3.91
168 169 1.134946 GCAGTGACAGGTGTTTTGCTT 59.865 47.619 0.00 0.00 0.00 3.91
169 170 2.801063 CAGTGACAGGTGTTTTGCTTG 58.199 47.619 0.00 0.00 0.00 4.01
170 171 2.164219 CAGTGACAGGTGTTTTGCTTGT 59.836 45.455 0.00 0.00 0.00 3.16
171 172 2.164219 AGTGACAGGTGTTTTGCTTGTG 59.836 45.455 0.00 0.00 0.00 3.33
172 173 2.163412 GTGACAGGTGTTTTGCTTGTGA 59.837 45.455 0.00 0.00 0.00 3.58
173 174 3.023119 TGACAGGTGTTTTGCTTGTGAT 58.977 40.909 0.00 0.00 0.00 3.06
174 175 3.446873 TGACAGGTGTTTTGCTTGTGATT 59.553 39.130 0.00 0.00 0.00 2.57
175 176 4.642437 TGACAGGTGTTTTGCTTGTGATTA 59.358 37.500 0.00 0.00 0.00 1.75
176 177 5.126222 TGACAGGTGTTTTGCTTGTGATTAA 59.874 36.000 0.00 0.00 0.00 1.40
177 178 6.160576 ACAGGTGTTTTGCTTGTGATTAAT 57.839 33.333 0.00 0.00 0.00 1.40
178 179 6.581712 ACAGGTGTTTTGCTTGTGATTAATT 58.418 32.000 0.00 0.00 0.00 1.40
179 180 7.047271 ACAGGTGTTTTGCTTGTGATTAATTT 58.953 30.769 0.00 0.00 0.00 1.82
180 181 8.200792 ACAGGTGTTTTGCTTGTGATTAATTTA 58.799 29.630 0.00 0.00 0.00 1.40
181 182 8.487176 CAGGTGTTTTGCTTGTGATTAATTTAC 58.513 33.333 0.00 0.00 0.00 2.01
182 183 8.200792 AGGTGTTTTGCTTGTGATTAATTTACA 58.799 29.630 3.24 3.24 0.00 2.41
183 184 8.987890 GGTGTTTTGCTTGTGATTAATTTACAT 58.012 29.630 7.15 0.00 0.00 2.29
184 185 9.796062 GTGTTTTGCTTGTGATTAATTTACATG 57.204 29.630 7.15 9.78 0.00 3.21
185 186 8.494347 TGTTTTGCTTGTGATTAATTTACATGC 58.506 29.630 23.25 23.25 42.42 4.06
186 187 8.711457 GTTTTGCTTGTGATTAATTTACATGCT 58.289 29.630 26.45 0.00 42.50 3.79
187 188 9.920133 TTTTGCTTGTGATTAATTTACATGCTA 57.080 25.926 26.45 21.62 42.50 3.49
188 189 9.920133 TTTGCTTGTGATTAATTTACATGCTAA 57.080 25.926 26.45 24.06 42.50 3.09
190 191 9.518906 TGCTTGTGATTAATTTACATGCTAATG 57.481 29.630 26.45 0.00 42.50 1.90
191 192 8.971321 GCTTGTGATTAATTTACATGCTAATGG 58.029 33.333 23.00 6.71 40.33 3.16
192 193 8.870160 TTGTGATTAATTTACATGCTAATGGC 57.130 30.769 7.15 0.00 38.19 4.40
193 194 7.138081 TGTGATTAATTTACATGCTAATGGCG 58.862 34.615 0.00 0.00 45.43 5.69
194 195 6.582295 GTGATTAATTTACATGCTAATGGCGG 59.418 38.462 0.00 0.00 45.43 6.13
195 196 5.446143 TTAATTTACATGCTAATGGCGGG 57.554 39.130 0.00 0.00 45.43 6.13
196 197 2.428544 TTTACATGCTAATGGCGGGT 57.571 45.000 0.00 0.00 45.43 5.28
197 198 1.674359 TTACATGCTAATGGCGGGTG 58.326 50.000 0.00 0.00 45.43 4.61
198 199 0.817634 TACATGCTAATGGCGGGTGC 60.818 55.000 0.00 0.00 45.43 5.01
199 200 1.825191 CATGCTAATGGCGGGTGCT 60.825 57.895 0.00 0.00 45.43 4.40
200 201 1.076777 ATGCTAATGGCGGGTGCTT 60.077 52.632 0.00 0.00 45.43 3.91
201 202 0.182537 ATGCTAATGGCGGGTGCTTA 59.817 50.000 0.00 0.00 45.43 3.09
202 203 0.034960 TGCTAATGGCGGGTGCTTAA 60.035 50.000 0.00 0.00 45.43 1.85
203 204 1.318576 GCTAATGGCGGGTGCTTAAT 58.681 50.000 0.00 0.00 42.25 1.40
204 205 2.158740 TGCTAATGGCGGGTGCTTAATA 60.159 45.455 0.00 0.00 45.43 0.98
205 206 2.882137 GCTAATGGCGGGTGCTTAATAA 59.118 45.455 0.00 0.00 42.25 1.40
206 207 3.058224 GCTAATGGCGGGTGCTTAATAAG 60.058 47.826 0.00 0.00 42.25 1.73
207 208 3.290948 AATGGCGGGTGCTTAATAAGA 57.709 42.857 3.88 0.00 42.25 2.10
208 209 3.508845 ATGGCGGGTGCTTAATAAGAT 57.491 42.857 3.88 0.00 42.25 2.40
209 210 3.290948 TGGCGGGTGCTTAATAAGATT 57.709 42.857 3.88 0.00 42.25 2.40
210 211 4.425180 TGGCGGGTGCTTAATAAGATTA 57.575 40.909 3.88 0.00 42.25 1.75
211 212 4.385825 TGGCGGGTGCTTAATAAGATTAG 58.614 43.478 3.88 0.00 42.25 1.73
212 213 3.188667 GGCGGGTGCTTAATAAGATTAGC 59.811 47.826 3.88 2.40 42.25 3.09
213 214 3.120649 GCGGGTGCTTAATAAGATTAGCG 60.121 47.826 3.88 0.00 38.39 4.26
214 215 3.432252 CGGGTGCTTAATAAGATTAGCGG 59.568 47.826 3.88 0.65 36.43 5.52
215 216 4.386711 GGGTGCTTAATAAGATTAGCGGT 58.613 43.478 3.88 0.00 36.43 5.68
216 217 4.820173 GGGTGCTTAATAAGATTAGCGGTT 59.180 41.667 3.88 0.00 36.43 4.44
217 218 5.277828 GGGTGCTTAATAAGATTAGCGGTTG 60.278 44.000 3.88 0.00 36.43 3.77
218 219 5.526111 GGTGCTTAATAAGATTAGCGGTTGA 59.474 40.000 3.88 0.00 36.43 3.18
219 220 6.419771 GTGCTTAATAAGATTAGCGGTTGAC 58.580 40.000 3.88 0.00 36.43 3.18
220 221 6.258068 GTGCTTAATAAGATTAGCGGTTGACT 59.742 38.462 3.88 0.00 36.43 3.41
221 222 6.257849 TGCTTAATAAGATTAGCGGTTGACTG 59.742 38.462 3.88 0.00 36.43 3.51
222 223 6.258068 GCTTAATAAGATTAGCGGTTGACTGT 59.742 38.462 3.88 0.00 0.00 3.55
223 224 7.534085 TTAATAAGATTAGCGGTTGACTGTG 57.466 36.000 0.00 0.00 0.00 3.66
224 225 1.726853 AGATTAGCGGTTGACTGTGC 58.273 50.000 0.00 0.00 0.00 4.57
225 226 1.001974 AGATTAGCGGTTGACTGTGCA 59.998 47.619 0.00 0.00 0.00 4.57
226 227 2.009774 GATTAGCGGTTGACTGTGCAT 58.990 47.619 0.00 0.00 0.00 3.96
227 228 1.155889 TTAGCGGTTGACTGTGCATG 58.844 50.000 0.00 0.00 0.00 4.06
228 229 1.298157 TAGCGGTTGACTGTGCATGC 61.298 55.000 11.82 11.82 0.00 4.06
229 230 2.906939 GCGGTTGACTGTGCATGCA 61.907 57.895 18.46 18.46 0.00 3.96
230 231 1.878070 CGGTTGACTGTGCATGCAT 59.122 52.632 25.64 8.04 0.00 3.96
231 232 0.455464 CGGTTGACTGTGCATGCATG 60.455 55.000 25.64 22.70 0.00 4.06
232 233 0.599558 GGTTGACTGTGCATGCATGT 59.400 50.000 25.64 24.17 0.00 3.21
233 234 1.667756 GGTTGACTGTGCATGCATGTG 60.668 52.381 25.64 18.30 0.00 3.21
234 235 1.001048 GTTGACTGTGCATGCATGTGT 60.001 47.619 25.64 21.31 0.00 3.72
235 236 0.876399 TGACTGTGCATGCATGTGTC 59.124 50.000 28.10 28.10 0.00 3.67
236 237 0.169672 GACTGTGCATGCATGTGTCC 59.830 55.000 25.64 10.35 0.00 4.02
237 238 1.246056 ACTGTGCATGCATGTGTCCC 61.246 55.000 25.64 9.55 0.00 4.46
238 239 1.228490 TGTGCATGCATGTGTCCCA 60.228 52.632 25.64 12.35 0.00 4.37
239 240 1.213537 GTGCATGCATGTGTCCCAC 59.786 57.895 25.64 20.56 34.56 4.61
240 241 1.978080 TGCATGCATGTGTCCCACC 60.978 57.895 26.79 8.94 32.73 4.61
241 242 2.713967 GCATGCATGTGTCCCACCC 61.714 63.158 26.79 4.06 32.73 4.61
242 243 1.304299 CATGCATGTGTCCCACCCA 60.304 57.895 18.91 0.00 32.73 4.51
243 244 1.000521 ATGCATGTGTCCCACCCAG 60.001 57.895 0.00 0.00 32.73 4.45
244 245 2.361610 GCATGTGTCCCACCCAGG 60.362 66.667 0.00 0.00 32.73 4.45
253 254 3.151906 CCACCCAGGGGATCGATC 58.848 66.667 17.36 17.36 38.96 3.69
254 255 2.520536 CCACCCAGGGGATCGATCC 61.521 68.421 32.57 32.57 46.41 3.36
262 263 2.049985 GGATCGATCCGTCCAGCG 60.050 66.667 27.93 0.00 37.19 5.18
263 264 2.722487 GATCGATCCGTCCAGCGT 59.278 61.111 14.76 0.00 39.32 5.07
264 265 1.065928 GATCGATCCGTCCAGCGTT 59.934 57.895 14.76 0.00 39.32 4.84
265 266 1.209275 GATCGATCCGTCCAGCGTTG 61.209 60.000 14.76 0.00 39.32 4.10
266 267 1.945354 ATCGATCCGTCCAGCGTTGT 61.945 55.000 0.00 0.00 39.32 3.32
267 268 2.444624 CGATCCGTCCAGCGTTGTG 61.445 63.158 0.00 0.00 39.32 3.33
268 269 1.374252 GATCCGTCCAGCGTTGTGT 60.374 57.895 0.00 0.00 39.32 3.72
269 270 1.352156 GATCCGTCCAGCGTTGTGTC 61.352 60.000 0.00 0.00 39.32 3.67
270 271 2.781595 ATCCGTCCAGCGTTGTGTCC 62.782 60.000 0.00 0.00 39.32 4.02
271 272 3.041940 CGTCCAGCGTTGTGTCCC 61.042 66.667 0.00 0.00 35.54 4.46
272 273 2.668550 GTCCAGCGTTGTGTCCCC 60.669 66.667 0.00 0.00 0.00 4.81
273 274 3.164977 TCCAGCGTTGTGTCCCCA 61.165 61.111 0.00 0.00 0.00 4.96
274 275 2.034066 CCAGCGTTGTGTCCCCAT 59.966 61.111 0.00 0.00 0.00 4.00
275 276 1.603455 CCAGCGTTGTGTCCCCATT 60.603 57.895 0.00 0.00 0.00 3.16
276 277 1.586154 CCAGCGTTGTGTCCCCATTC 61.586 60.000 0.00 0.00 0.00 2.67
277 278 1.303317 AGCGTTGTGTCCCCATTCC 60.303 57.895 0.00 0.00 0.00 3.01
278 279 1.602323 GCGTTGTGTCCCCATTCCA 60.602 57.895 0.00 0.00 0.00 3.53
279 280 1.586154 GCGTTGTGTCCCCATTCCAG 61.586 60.000 0.00 0.00 0.00 3.86
280 281 1.586154 CGTTGTGTCCCCATTCCAGC 61.586 60.000 0.00 0.00 0.00 4.85
281 282 0.251341 GTTGTGTCCCCATTCCAGCT 60.251 55.000 0.00 0.00 0.00 4.24
282 283 0.482446 TTGTGTCCCCATTCCAGCTT 59.518 50.000 0.00 0.00 0.00 3.74
283 284 0.251297 TGTGTCCCCATTCCAGCTTG 60.251 55.000 0.00 0.00 0.00 4.01
284 285 0.967380 GTGTCCCCATTCCAGCTTGG 60.967 60.000 0.00 0.00 39.43 3.61
285 286 2.054453 GTCCCCATTCCAGCTTGGC 61.054 63.158 0.00 0.00 37.47 4.52
286 287 2.037687 CCCCATTCCAGCTTGGCA 59.962 61.111 0.00 0.00 37.47 4.92
287 288 2.056223 CCCCATTCCAGCTTGGCAG 61.056 63.158 0.00 0.00 37.47 4.85
296 297 3.096791 GCTTGGCAGCAGATCGAC 58.903 61.111 0.00 0.00 46.49 4.20
297 298 1.449246 GCTTGGCAGCAGATCGACT 60.449 57.895 0.00 0.00 46.49 4.18
298 299 1.703438 GCTTGGCAGCAGATCGACTG 61.703 60.000 12.22 12.22 46.49 3.51
313 314 5.687285 AGATCGACTGAAACAAAATTTGTGC 59.313 36.000 12.50 8.36 44.59 4.57
314 315 4.992688 TCGACTGAAACAAAATTTGTGCT 58.007 34.783 12.50 2.82 44.59 4.40
315 316 5.034152 TCGACTGAAACAAAATTTGTGCTC 58.966 37.500 12.50 12.15 44.59 4.26
316 317 4.797868 CGACTGAAACAAAATTTGTGCTCA 59.202 37.500 12.50 15.62 44.59 4.26
319 320 6.264909 CTGAAACAAAATTTGTGCTCAGTC 57.735 37.500 26.66 14.35 44.59 3.51
320 321 4.797868 TGAAACAAAATTTGTGCTCAGTCG 59.202 37.500 12.50 0.00 44.59 4.18
321 322 4.630894 AACAAAATTTGTGCTCAGTCGA 57.369 36.364 12.50 0.00 44.59 4.20
322 323 4.836125 ACAAAATTTGTGCTCAGTCGAT 57.164 36.364 10.91 0.00 43.48 3.59
323 324 5.186996 ACAAAATTTGTGCTCAGTCGATT 57.813 34.783 10.91 0.00 43.48 3.34
324 325 4.977963 ACAAAATTTGTGCTCAGTCGATTG 59.022 37.500 10.91 0.68 43.48 2.67
325 326 5.214417 CAAAATTTGTGCTCAGTCGATTGA 58.786 37.500 10.44 10.44 0.00 2.57
326 327 5.437289 AAATTTGTGCTCAGTCGATTGAA 57.563 34.783 12.02 0.00 0.00 2.69
327 328 5.437289 AATTTGTGCTCAGTCGATTGAAA 57.563 34.783 12.02 3.48 0.00 2.69
328 329 3.878086 TTGTGCTCAGTCGATTGAAAC 57.122 42.857 12.02 12.85 0.00 2.78
329 330 2.832563 TGTGCTCAGTCGATTGAAACA 58.167 42.857 17.10 17.10 0.00 2.83
330 331 3.202097 TGTGCTCAGTCGATTGAAACAA 58.798 40.909 18.13 7.22 0.00 2.83
331 332 3.625313 TGTGCTCAGTCGATTGAAACAAA 59.375 39.130 18.13 10.21 0.00 2.83
332 333 4.275689 TGTGCTCAGTCGATTGAAACAAAT 59.724 37.500 18.13 0.00 0.00 2.32
333 334 5.215160 GTGCTCAGTCGATTGAAACAAATT 58.785 37.500 12.02 0.00 0.00 1.82
334 335 5.687285 GTGCTCAGTCGATTGAAACAAATTT 59.313 36.000 12.02 0.00 0.00 1.82
335 336 6.198966 GTGCTCAGTCGATTGAAACAAATTTT 59.801 34.615 12.02 0.00 0.00 1.82
336 337 6.198778 TGCTCAGTCGATTGAAACAAATTTTG 59.801 34.615 12.02 7.59 0.00 2.44
353 354 9.603921 ACAAATTTTGTTTCAATTGACTGATCT 57.396 25.926 7.89 0.00 42.22 2.75
361 362 9.591792 TGTTTCAATTGACTGATCTATAGTCTG 57.408 33.333 7.89 4.14 43.79 3.51
362 363 9.593134 GTTTCAATTGACTGATCTATAGTCTGT 57.407 33.333 7.89 11.71 43.79 3.41
363 364 9.809096 TTTCAATTGACTGATCTATAGTCTGTC 57.191 33.333 21.65 21.65 43.79 3.51
364 365 7.946207 TCAATTGACTGATCTATAGTCTGTCC 58.054 38.462 23.45 14.49 43.79 4.02
365 366 6.909550 ATTGACTGATCTATAGTCTGTCCC 57.090 41.667 23.45 12.19 43.79 4.46
366 367 4.390264 TGACTGATCTATAGTCTGTCCCG 58.610 47.826 23.45 9.03 43.79 5.14
367 368 4.102681 TGACTGATCTATAGTCTGTCCCGA 59.897 45.833 23.45 12.87 43.79 5.14
368 369 5.050126 ACTGATCTATAGTCTGTCCCGAA 57.950 43.478 0.00 0.00 0.00 4.30
369 370 5.636123 ACTGATCTATAGTCTGTCCCGAAT 58.364 41.667 0.00 0.00 0.00 3.34
370 371 5.475220 ACTGATCTATAGTCTGTCCCGAATG 59.525 44.000 0.00 0.00 0.00 2.67
371 372 5.386060 TGATCTATAGTCTGTCCCGAATGT 58.614 41.667 0.00 0.00 0.00 2.71
372 373 5.833667 TGATCTATAGTCTGTCCCGAATGTT 59.166 40.000 0.00 0.00 0.00 2.71
373 374 6.323996 TGATCTATAGTCTGTCCCGAATGTTT 59.676 38.462 0.00 0.00 0.00 2.83
374 375 6.540438 TCTATAGTCTGTCCCGAATGTTTT 57.460 37.500 0.00 0.00 0.00 2.43
375 376 6.942976 TCTATAGTCTGTCCCGAATGTTTTT 58.057 36.000 0.00 0.00 0.00 1.94
376 377 5.880054 ATAGTCTGTCCCGAATGTTTTTG 57.120 39.130 0.00 0.00 0.00 2.44
377 378 3.815809 AGTCTGTCCCGAATGTTTTTGA 58.184 40.909 0.00 0.00 0.00 2.69
378 379 3.564225 AGTCTGTCCCGAATGTTTTTGAC 59.436 43.478 0.00 0.00 0.00 3.18
379 380 3.314080 GTCTGTCCCGAATGTTTTTGACA 59.686 43.478 0.00 0.00 43.71 3.58
380 381 3.314080 TCTGTCCCGAATGTTTTTGACAC 59.686 43.478 0.00 0.00 42.04 3.67
381 382 2.359531 TGTCCCGAATGTTTTTGACACC 59.640 45.455 0.00 0.00 42.04 4.16
382 383 2.359531 GTCCCGAATGTTTTTGACACCA 59.640 45.455 0.00 0.00 42.04 4.17
383 384 2.621055 TCCCGAATGTTTTTGACACCAG 59.379 45.455 0.00 0.00 42.04 4.00
384 385 2.360801 CCCGAATGTTTTTGACACCAGT 59.639 45.455 0.00 0.00 42.04 4.00
385 386 3.371168 CCGAATGTTTTTGACACCAGTG 58.629 45.455 0.00 0.00 42.04 3.66
387 388 4.035792 CCGAATGTTTTTGACACCAGTGTA 59.964 41.667 2.85 0.00 45.05 2.90
388 389 5.204833 CGAATGTTTTTGACACCAGTGTAG 58.795 41.667 2.85 0.00 45.05 2.74
389 390 5.220777 CGAATGTTTTTGACACCAGTGTAGT 60.221 40.000 2.85 0.00 45.05 2.73
390 391 6.524101 AATGTTTTTGACACCAGTGTAGTT 57.476 33.333 2.85 0.00 45.05 2.24
391 392 5.968528 TGTTTTTGACACCAGTGTAGTTT 57.031 34.783 2.85 0.00 45.05 2.66
392 393 7.633193 ATGTTTTTGACACCAGTGTAGTTTA 57.367 32.000 2.85 0.00 45.05 2.01
393 394 7.450124 TGTTTTTGACACCAGTGTAGTTTAA 57.550 32.000 2.85 0.00 45.05 1.52
394 395 7.883217 TGTTTTTGACACCAGTGTAGTTTAAA 58.117 30.769 2.85 0.00 45.05 1.52
395 396 8.358148 TGTTTTTGACACCAGTGTAGTTTAAAA 58.642 29.630 2.85 4.88 45.05 1.52
396 397 9.194271 GTTTTTGACACCAGTGTAGTTTAAAAA 57.806 29.630 2.85 9.68 45.05 1.94
397 398 8.745464 TTTTGACACCAGTGTAGTTTAAAAAC 57.255 30.769 2.85 0.00 45.05 2.43
398 399 6.109320 TGACACCAGTGTAGTTTAAAAACG 57.891 37.500 2.85 0.00 45.05 3.60
399 400 5.642919 TGACACCAGTGTAGTTTAAAAACGT 59.357 36.000 2.85 0.00 45.05 3.99
400 401 6.149142 TGACACCAGTGTAGTTTAAAAACGTT 59.851 34.615 2.85 0.00 45.05 3.99
401 402 6.545508 ACACCAGTGTAGTTTAAAAACGTTC 58.454 36.000 0.00 0.00 42.90 3.95
402 403 6.372381 ACACCAGTGTAGTTTAAAAACGTTCT 59.628 34.615 0.00 0.00 42.90 3.01
403 404 7.094677 ACACCAGTGTAGTTTAAAAACGTTCTT 60.095 33.333 0.00 0.00 42.90 2.52
404 405 8.389603 CACCAGTGTAGTTTAAAAACGTTCTTA 58.610 33.333 0.00 0.00 43.51 2.10
405 406 9.112725 ACCAGTGTAGTTTAAAAACGTTCTTAT 57.887 29.630 0.00 0.00 43.51 1.73
418 419 8.776376 AAAACGTTCTTATATTTTAGGACGGA 57.224 30.769 0.00 0.00 45.45 4.69
419 420 7.998753 AACGTTCTTATATTTTAGGACGGAG 57.001 36.000 13.99 0.00 45.45 4.63
420 421 6.510536 ACGTTCTTATATTTTAGGACGGAGG 58.489 40.000 13.99 0.00 45.45 4.30
421 422 6.097412 ACGTTCTTATATTTTAGGACGGAGGT 59.903 38.462 13.99 0.00 45.45 3.85
422 423 7.285401 ACGTTCTTATATTTTAGGACGGAGGTA 59.715 37.037 13.99 0.00 45.45 3.08
423 424 7.806960 CGTTCTTATATTTTAGGACGGAGGTAG 59.193 40.741 0.00 0.00 39.22 3.18
438 439 4.024218 CGGAGGTAGTACTTATCAGGTTCG 60.024 50.000 0.00 0.00 0.00 3.95
516 517 8.779354 ACATGTTTATAGGAGTTCACTTTCTC 57.221 34.615 0.00 0.00 0.00 2.87
530 531 6.462073 TCACTTTCTCGAATTTTTCTACCG 57.538 37.500 0.00 0.00 0.00 4.02
538 539 0.746923 ATTTTTCTACCGGCGAGGGC 60.747 55.000 9.30 0.00 46.96 5.19
557 558 2.576615 GCAGGGTGGCCTAGAAAATAG 58.423 52.381 3.32 0.00 0.00 1.73
590 591 7.416817 AGCAATTTACAAAACAAATTGGCTTC 58.583 30.769 17.49 5.65 46.37 3.86
602 603 7.816945 ACAAATTGGCTTCAGATTTATTTCG 57.183 32.000 0.00 0.00 0.00 3.46
603 604 7.601856 ACAAATTGGCTTCAGATTTATTTCGA 58.398 30.769 0.00 0.00 0.00 3.71
604 605 7.542130 ACAAATTGGCTTCAGATTTATTTCGAC 59.458 33.333 0.00 0.00 0.00 4.20
605 606 6.757897 ATTGGCTTCAGATTTATTTCGACA 57.242 33.333 0.00 0.00 0.00 4.35
606 607 5.801350 TGGCTTCAGATTTATTTCGACAG 57.199 39.130 0.00 0.00 0.00 3.51
617 618 5.600908 TTATTTCGACAGCACAAAGTACC 57.399 39.130 0.00 0.00 0.00 3.34
621 622 2.610374 TCGACAGCACAAAGTACCAAAC 59.390 45.455 0.00 0.00 0.00 2.93
654 655 6.884836 AGGATCCAAGTACAACAAATAAGACC 59.115 38.462 15.82 0.00 0.00 3.85
710 751 3.986996 TCATGAGTGAGCCTGAAATCA 57.013 42.857 0.00 0.00 0.00 2.57
780 821 0.032678 AGTCTGAGCACGACCTTGTG 59.967 55.000 0.00 0.00 42.81 3.33
802 843 4.037327 TGCATCAAACCAATCGAAGAAACA 59.963 37.500 0.00 0.00 43.58 2.83
820 861 6.105333 AGAAACAAAGTAAACAATGCAGCAA 58.895 32.000 0.00 0.00 0.00 3.91
881 922 7.561251 TCAAAGGATATACCGATGAGAACAAA 58.439 34.615 0.00 0.00 44.74 2.83
915 956 1.182667 TCATCCAACCGACTCGTCAT 58.817 50.000 0.00 0.00 0.00 3.06
942 992 3.774702 GCCGACCAAGCGAACGAC 61.775 66.667 0.00 0.00 0.00 4.34
963 1013 0.179089 CTCTCATTCTCAGGCCACCG 60.179 60.000 5.01 0.00 0.00 4.94
987 1037 0.746063 CTCTCTTCGCAGAGGCAGAT 59.254 55.000 12.26 0.00 46.17 2.90
990 1040 0.459078 TCTTCGCAGAGGCAGATCAG 59.541 55.000 0.00 0.00 41.24 2.90
993 1043 0.967380 TCGCAGAGGCAGATCAGTCA 60.967 55.000 0.00 0.00 41.24 3.41
996 1046 0.179078 CAGAGGCAGATCAGTCAGGC 60.179 60.000 0.00 0.00 36.79 4.85
1191 1241 1.593787 CTCGAGGCAGCAGAAGGAA 59.406 57.895 3.91 0.00 0.00 3.36
1194 1244 1.077858 GAGGCAGCAGAAGGAAGGG 60.078 63.158 0.00 0.00 0.00 3.95
1464 1514 2.097918 GACGACGACGATGACGCT 59.902 61.111 15.32 0.00 43.96 5.07
1471 1521 1.080772 GACGATGACGCTCACCACA 60.081 57.895 0.00 0.00 43.96 4.17
1473 1523 0.037326 ACGATGACGCTCACCACAAT 60.037 50.000 0.00 0.00 43.96 2.71
1515 1565 3.144120 CTACGAGGAGCTGCGGCAT 62.144 63.158 21.93 4.75 41.70 4.40
1751 1801 1.669115 CGTGCCTGGTGGTCAAGAG 60.669 63.158 0.00 0.00 35.27 2.85
1809 1859 2.733218 CGCGGTCGTTCTTGAGCA 60.733 61.111 0.00 0.00 36.16 4.26
1847 1898 1.683917 GGCCATCAGAGACGTACATCT 59.316 52.381 0.00 0.00 0.00 2.90
1876 1927 2.928116 GGTACTACAACGATGCAGGTTC 59.072 50.000 3.15 0.00 0.00 3.62
1917 1968 2.761559 CACCGTCCACAATGTGTTCTA 58.238 47.619 12.79 0.00 0.00 2.10
1918 1969 2.478894 CACCGTCCACAATGTGTTCTAC 59.521 50.000 12.79 4.31 0.00 2.59
1919 1970 1.724623 CCGTCCACAATGTGTTCTACG 59.275 52.381 12.79 14.61 0.00 3.51
1920 1971 1.724623 CGTCCACAATGTGTTCTACGG 59.275 52.381 12.79 0.00 0.00 4.02
1921 1972 2.608506 CGTCCACAATGTGTTCTACGGA 60.609 50.000 12.79 0.00 0.00 4.69
1922 1973 2.993899 GTCCACAATGTGTTCTACGGAG 59.006 50.000 12.79 0.00 0.00 4.63
1924 1975 3.827876 TCCACAATGTGTTCTACGGAGTA 59.172 43.478 12.79 0.00 45.11 2.59
1925 1976 4.281435 TCCACAATGTGTTCTACGGAGTAA 59.719 41.667 12.79 0.00 45.13 2.24
1926 1977 4.387862 CCACAATGTGTTCTACGGAGTAAC 59.612 45.833 12.79 0.00 45.13 2.50
1975 2032 4.780275 AAAGAGCAGAATTCTTGAAGGC 57.220 40.909 4.86 5.91 35.20 4.35
1976 2033 3.717452 AGAGCAGAATTCTTGAAGGCT 57.283 42.857 15.04 15.04 0.00 4.58
1977 2034 4.031636 AGAGCAGAATTCTTGAAGGCTT 57.968 40.909 15.93 0.00 0.00 4.35
1978 2035 3.757493 AGAGCAGAATTCTTGAAGGCTTG 59.243 43.478 15.93 0.87 0.00 4.01
1979 2036 3.755378 GAGCAGAATTCTTGAAGGCTTGA 59.245 43.478 15.93 0.00 0.00 3.02
1980 2037 4.147321 AGCAGAATTCTTGAAGGCTTGAA 58.853 39.130 3.46 0.34 0.00 2.69
2020 2077 2.040544 GGTGCTTCATCCACACCCG 61.041 63.158 0.00 0.00 46.65 5.28
2023 2080 2.100631 GCTTCATCCACACCCGTCG 61.101 63.158 0.00 0.00 0.00 5.12
2049 2106 4.566488 CCCCTCTTTGTGTATTGCTTCTCT 60.566 45.833 0.00 0.00 0.00 3.10
2066 2123 5.568423 GCTTCTCTCTCCTCTCACAAATGAA 60.568 44.000 0.00 0.00 33.30 2.57
2074 2131 4.278170 TCCTCTCACAAATGAATTGCGTTT 59.722 37.500 0.00 0.00 43.13 3.60
2207 2264 1.543941 CGACCATCGAAGCGATCTGC 61.544 60.000 0.00 1.92 45.19 4.26
2296 2354 2.126228 CGTAGCCGAAACGAGCCA 60.126 61.111 0.00 0.00 42.90 4.75
2298 2356 1.082117 CGTAGCCGAAACGAGCCAAT 61.082 55.000 0.00 0.00 42.90 3.16
2325 2383 2.234168 GTCCTTGTCACCTTCCTCCTAC 59.766 54.545 0.00 0.00 0.00 3.18
2332 2390 0.041386 ACCTTCCTCCTACCGAAGCT 59.959 55.000 0.00 0.00 35.23 3.74
2368 2426 6.887545 TGTCAATGGTAGTCGGGAAATATTTT 59.112 34.615 1.43 0.00 0.00 1.82
2390 2448 1.647545 TACGTGTCGCTAAGGACCGG 61.648 60.000 0.00 0.00 35.98 5.28
2392 2450 3.766691 TGTCGCTAAGGACCGGCC 61.767 66.667 0.00 3.58 36.07 6.13
2427 2485 7.231607 TCGTTAAAGTAATCTGAACGAAATGC 58.768 34.615 5.75 0.00 43.36 3.56
2430 2488 5.456192 AAGTAATCTGAACGAAATGCGAG 57.544 39.130 0.00 0.00 44.57 5.03
2494 2553 4.630069 ACATGTAGCGGTAACAGATTGAAC 59.370 41.667 0.00 0.00 0.00 3.18
2505 2564 2.939103 ACAGATTGAACCAGATTAGCGC 59.061 45.455 0.00 0.00 0.00 5.92
2507 2566 3.247173 CAGATTGAACCAGATTAGCGCTC 59.753 47.826 16.34 0.00 0.00 5.03
2527 2586 4.619394 GCTCGCAATGCCTAGACTATACAT 60.619 45.833 0.00 0.00 0.00 2.29
2625 2686 4.103153 AGAGGGAGTGATCTGTTTTGAACA 59.897 41.667 0.00 0.00 39.52 3.18
2638 2699 5.636837 TGTTTTGAACACTGAAGTTGTAGC 58.363 37.500 0.00 0.00 36.25 3.58
2663 2724 1.039856 GCACAGACAAACCCCACATT 58.960 50.000 0.00 0.00 0.00 2.71
2695 2756 7.202093 CCCTGAAATTGATACCCTATACTCACA 60.202 40.741 0.00 0.00 0.00 3.58
2716 2777 5.533154 CACAGATCTCGGTAAATCTAGACCT 59.467 44.000 0.00 0.00 33.21 3.85
2765 2826 5.511386 AGATGATCCTGGATGGGATTAAC 57.489 43.478 15.25 0.00 45.18 2.01
2806 2867 0.680618 CATGGTTGCCTCTTTTGCCA 59.319 50.000 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.222618 TGTGTTATACGCAACGCAATCG 60.223 45.455 8.42 0.00 43.81 3.34
6 7 3.377434 TGTGTTATACGCAACGCAATC 57.623 42.857 8.42 0.00 43.81 2.67
10 11 3.111958 ACAATGTGTTATACGCAACGC 57.888 42.857 0.00 2.69 42.39 4.84
11 12 7.536225 TTTTTACAATGTGTTATACGCAACG 57.464 32.000 0.00 0.00 42.39 4.10
74 75 2.086610 ATGTGCACTCCCACCTTTTT 57.913 45.000 19.41 0.00 34.85 1.94
75 76 2.969821 TATGTGCACTCCCACCTTTT 57.030 45.000 19.41 0.00 34.85 2.27
76 77 3.523564 ACTATATGTGCACTCCCACCTTT 59.476 43.478 19.41 0.00 34.85 3.11
77 78 3.115390 ACTATATGTGCACTCCCACCTT 58.885 45.455 19.41 0.00 34.85 3.50
78 79 2.700897 GACTATATGTGCACTCCCACCT 59.299 50.000 19.41 0.00 34.85 4.00
79 80 2.434336 TGACTATATGTGCACTCCCACC 59.566 50.000 19.41 2.78 34.85 4.61
80 81 3.133003 ACTGACTATATGTGCACTCCCAC 59.867 47.826 19.41 4.47 36.28 4.61
81 82 3.374764 ACTGACTATATGTGCACTCCCA 58.625 45.455 19.41 0.00 0.00 4.37
82 83 4.341235 TGTACTGACTATATGTGCACTCCC 59.659 45.833 19.41 1.10 0.00 4.30
83 84 5.515797 TGTACTGACTATATGTGCACTCC 57.484 43.478 19.41 0.00 0.00 3.85
84 85 7.517417 GCAATTGTACTGACTATATGTGCACTC 60.517 40.741 19.41 6.48 0.00 3.51
85 86 6.258727 GCAATTGTACTGACTATATGTGCACT 59.741 38.462 19.41 6.22 0.00 4.40
86 87 6.037062 TGCAATTGTACTGACTATATGTGCAC 59.963 38.462 10.75 10.75 0.00 4.57
87 88 6.037062 GTGCAATTGTACTGACTATATGTGCA 59.963 38.462 18.20 0.00 0.00 4.57
88 89 6.258727 AGTGCAATTGTACTGACTATATGTGC 59.741 38.462 25.82 0.00 39.51 4.57
89 90 7.776933 AGTGCAATTGTACTGACTATATGTG 57.223 36.000 25.82 0.00 39.51 3.21
100 101 4.932799 TGTTATACGCAGTGCAATTGTACT 59.067 37.500 21.80 21.80 45.73 2.73
101 102 5.019498 GTGTTATACGCAGTGCAATTGTAC 58.981 41.667 17.86 17.86 45.73 2.90
102 103 4.691216 TGTGTTATACGCAGTGCAATTGTA 59.309 37.500 16.83 9.40 45.73 2.41
103 104 3.500299 TGTGTTATACGCAGTGCAATTGT 59.500 39.130 16.83 7.27 45.73 2.71
104 105 4.077063 TGTGTTATACGCAGTGCAATTG 57.923 40.909 16.83 0.00 45.73 2.32
105 106 4.494035 CGATGTGTTATACGCAGTGCAATT 60.494 41.667 16.83 0.65 45.73 2.32
106 107 3.001228 CGATGTGTTATACGCAGTGCAAT 59.999 43.478 16.83 10.41 45.73 3.56
107 108 2.347150 CGATGTGTTATACGCAGTGCAA 59.653 45.455 16.83 2.33 45.73 4.08
108 109 1.923864 CGATGTGTTATACGCAGTGCA 59.076 47.619 16.83 0.00 45.73 4.57
109 110 1.924524 ACGATGTGTTATACGCAGTGC 59.075 47.619 4.58 4.58 45.73 4.40
110 111 2.921121 ACACGATGTGTTATACGCAGTG 59.079 45.455 9.71 9.71 45.08 3.66
111 112 3.226346 ACACGATGTGTTATACGCAGT 57.774 42.857 0.00 0.00 45.08 4.40
122 123 2.065512 TCCGAATGACAACACGATGTG 58.934 47.619 0.00 0.00 39.75 3.21
123 124 2.448926 TCCGAATGACAACACGATGT 57.551 45.000 0.00 0.00 35.90 3.06
124 125 5.434706 CATTATCCGAATGACAACACGATG 58.565 41.667 0.00 0.00 0.00 3.84
125 126 4.511454 CCATTATCCGAATGACAACACGAT 59.489 41.667 0.00 0.00 0.00 3.73
126 127 3.868661 CCATTATCCGAATGACAACACGA 59.131 43.478 0.00 0.00 0.00 4.35
127 128 3.546020 GCCATTATCCGAATGACAACACG 60.546 47.826 0.00 0.00 0.00 4.49
128 129 3.376859 TGCCATTATCCGAATGACAACAC 59.623 43.478 0.00 0.00 0.00 3.32
129 130 3.615155 TGCCATTATCCGAATGACAACA 58.385 40.909 0.00 0.00 0.00 3.33
130 131 3.627577 ACTGCCATTATCCGAATGACAAC 59.372 43.478 0.00 0.00 0.00 3.32
131 132 3.627123 CACTGCCATTATCCGAATGACAA 59.373 43.478 0.00 0.00 0.00 3.18
132 133 3.118445 TCACTGCCATTATCCGAATGACA 60.118 43.478 0.00 0.00 0.00 3.58
133 134 3.248602 GTCACTGCCATTATCCGAATGAC 59.751 47.826 0.00 0.00 0.00 3.06
134 135 3.118445 TGTCACTGCCATTATCCGAATGA 60.118 43.478 0.00 0.00 0.00 2.57
135 136 3.205338 TGTCACTGCCATTATCCGAATG 58.795 45.455 0.00 0.00 0.00 2.67
136 137 3.470709 CTGTCACTGCCATTATCCGAAT 58.529 45.455 0.00 0.00 0.00 3.34
137 138 2.419990 CCTGTCACTGCCATTATCCGAA 60.420 50.000 0.00 0.00 0.00 4.30
138 139 1.138859 CCTGTCACTGCCATTATCCGA 59.861 52.381 0.00 0.00 0.00 4.55
139 140 1.134401 ACCTGTCACTGCCATTATCCG 60.134 52.381 0.00 0.00 0.00 4.18
140 141 2.292267 CACCTGTCACTGCCATTATCC 58.708 52.381 0.00 0.00 0.00 2.59
141 142 2.991250 ACACCTGTCACTGCCATTATC 58.009 47.619 0.00 0.00 0.00 1.75
142 143 3.439857 AACACCTGTCACTGCCATTAT 57.560 42.857 0.00 0.00 0.00 1.28
143 144 2.949177 AACACCTGTCACTGCCATTA 57.051 45.000 0.00 0.00 0.00 1.90
144 145 2.071778 AAACACCTGTCACTGCCATT 57.928 45.000 0.00 0.00 0.00 3.16
145 146 1.682854 CAAAACACCTGTCACTGCCAT 59.317 47.619 0.00 0.00 0.00 4.40
146 147 1.102154 CAAAACACCTGTCACTGCCA 58.898 50.000 0.00 0.00 0.00 4.92
147 148 0.249031 GCAAAACACCTGTCACTGCC 60.249 55.000 0.00 0.00 0.00 4.85
148 149 0.740737 AGCAAAACACCTGTCACTGC 59.259 50.000 0.00 0.00 0.00 4.40
149 150 2.164219 ACAAGCAAAACACCTGTCACTG 59.836 45.455 0.00 0.00 0.00 3.66
150 151 2.164219 CACAAGCAAAACACCTGTCACT 59.836 45.455 0.00 0.00 0.00 3.41
151 152 2.163412 TCACAAGCAAAACACCTGTCAC 59.837 45.455 0.00 0.00 0.00 3.67
152 153 2.441410 TCACAAGCAAAACACCTGTCA 58.559 42.857 0.00 0.00 0.00 3.58
153 154 3.715628 ATCACAAGCAAAACACCTGTC 57.284 42.857 0.00 0.00 0.00 3.51
154 155 5.590530 TTAATCACAAGCAAAACACCTGT 57.409 34.783 0.00 0.00 0.00 4.00
155 156 7.481275 AAATTAATCACAAGCAAAACACCTG 57.519 32.000 0.00 0.00 0.00 4.00
156 157 8.200792 TGTAAATTAATCACAAGCAAAACACCT 58.799 29.630 1.41 0.00 0.00 4.00
157 158 8.359060 TGTAAATTAATCACAAGCAAAACACC 57.641 30.769 1.41 0.00 0.00 4.16
158 159 9.796062 CATGTAAATTAATCACAAGCAAAACAC 57.204 29.630 6.87 0.00 0.00 3.32
159 160 8.494347 GCATGTAAATTAATCACAAGCAAAACA 58.506 29.630 18.22 0.00 36.99 2.83
160 161 8.711457 AGCATGTAAATTAATCACAAGCAAAAC 58.289 29.630 22.12 4.00 38.87 2.43
161 162 8.830201 AGCATGTAAATTAATCACAAGCAAAA 57.170 26.923 22.12 0.00 38.87 2.44
162 163 9.920133 TTAGCATGTAAATTAATCACAAGCAAA 57.080 25.926 22.12 12.89 38.87 3.68
164 165 9.518906 CATTAGCATGTAAATTAATCACAAGCA 57.481 29.630 22.12 10.56 38.87 3.91
165 166 8.971321 CCATTAGCATGTAAATTAATCACAAGC 58.029 33.333 16.57 16.57 37.20 4.01
166 167 8.971321 GCCATTAGCATGTAAATTAATCACAAG 58.029 33.333 6.87 4.62 42.97 3.16
167 168 7.647318 CGCCATTAGCATGTAAATTAATCACAA 59.353 33.333 6.87 0.00 44.04 3.33
168 169 7.138081 CGCCATTAGCATGTAAATTAATCACA 58.862 34.615 5.57 5.57 44.04 3.58
169 170 6.582295 CCGCCATTAGCATGTAAATTAATCAC 59.418 38.462 0.00 0.00 44.04 3.06
170 171 6.294453 CCCGCCATTAGCATGTAAATTAATCA 60.294 38.462 0.00 0.00 44.04 2.57
171 172 6.092748 CCCGCCATTAGCATGTAAATTAATC 58.907 40.000 0.00 0.00 44.04 1.75
172 173 5.538433 ACCCGCCATTAGCATGTAAATTAAT 59.462 36.000 0.00 0.00 44.04 1.40
173 174 4.890581 ACCCGCCATTAGCATGTAAATTAA 59.109 37.500 0.00 0.00 44.04 1.40
174 175 4.277174 CACCCGCCATTAGCATGTAAATTA 59.723 41.667 0.00 0.00 44.04 1.40
175 176 3.068024 CACCCGCCATTAGCATGTAAATT 59.932 43.478 0.00 0.00 44.04 1.82
176 177 2.622942 CACCCGCCATTAGCATGTAAAT 59.377 45.455 0.00 0.00 44.04 1.40
177 178 2.020720 CACCCGCCATTAGCATGTAAA 58.979 47.619 0.00 0.00 44.04 2.01
178 179 1.674359 CACCCGCCATTAGCATGTAA 58.326 50.000 0.00 0.00 44.04 2.41
179 180 0.817634 GCACCCGCCATTAGCATGTA 60.818 55.000 0.00 0.00 44.04 2.29
180 181 2.120909 GCACCCGCCATTAGCATGT 61.121 57.895 0.00 0.00 44.04 3.21
181 182 1.386525 AAGCACCCGCCATTAGCATG 61.387 55.000 0.00 0.00 44.04 4.06
182 183 0.182537 TAAGCACCCGCCATTAGCAT 59.817 50.000 0.00 0.00 44.04 3.79
183 184 0.034960 TTAAGCACCCGCCATTAGCA 60.035 50.000 0.00 0.00 44.04 3.49
184 185 1.318576 ATTAAGCACCCGCCATTAGC 58.681 50.000 0.00 0.00 39.83 3.09
185 186 4.385825 TCTTATTAAGCACCCGCCATTAG 58.614 43.478 0.00 0.00 39.83 1.73
186 187 4.425180 TCTTATTAAGCACCCGCCATTA 57.575 40.909 0.00 0.00 39.83 1.90
187 188 3.290948 TCTTATTAAGCACCCGCCATT 57.709 42.857 0.00 0.00 39.83 3.16
188 189 3.508845 ATCTTATTAAGCACCCGCCAT 57.491 42.857 0.00 0.00 39.83 4.40
189 190 3.290948 AATCTTATTAAGCACCCGCCA 57.709 42.857 0.00 0.00 39.83 5.69
190 191 3.188667 GCTAATCTTATTAAGCACCCGCC 59.811 47.826 0.00 0.00 39.83 6.13
191 192 3.120649 CGCTAATCTTATTAAGCACCCGC 60.121 47.826 0.00 0.00 34.60 6.13
192 193 3.432252 CCGCTAATCTTATTAAGCACCCG 59.568 47.826 0.00 0.00 34.60 5.28
193 194 4.386711 ACCGCTAATCTTATTAAGCACCC 58.613 43.478 0.00 0.00 34.60 4.61
194 195 5.526111 TCAACCGCTAATCTTATTAAGCACC 59.474 40.000 0.00 0.00 34.60 5.01
195 196 6.258068 AGTCAACCGCTAATCTTATTAAGCAC 59.742 38.462 0.00 0.00 34.60 4.40
196 197 6.257849 CAGTCAACCGCTAATCTTATTAAGCA 59.742 38.462 0.00 0.00 34.60 3.91
197 198 6.258068 ACAGTCAACCGCTAATCTTATTAAGC 59.742 38.462 0.00 0.00 0.00 3.09
198 199 7.621991 CACAGTCAACCGCTAATCTTATTAAG 58.378 38.462 0.00 0.00 0.00 1.85
199 200 6.036735 GCACAGTCAACCGCTAATCTTATTAA 59.963 38.462 0.00 0.00 0.00 1.40
200 201 5.522460 GCACAGTCAACCGCTAATCTTATTA 59.478 40.000 0.00 0.00 0.00 0.98
201 202 4.332819 GCACAGTCAACCGCTAATCTTATT 59.667 41.667 0.00 0.00 0.00 1.40
202 203 3.871594 GCACAGTCAACCGCTAATCTTAT 59.128 43.478 0.00 0.00 0.00 1.73
203 204 3.259064 GCACAGTCAACCGCTAATCTTA 58.741 45.455 0.00 0.00 0.00 2.10
204 205 2.076863 GCACAGTCAACCGCTAATCTT 58.923 47.619 0.00 0.00 0.00 2.40
205 206 1.001974 TGCACAGTCAACCGCTAATCT 59.998 47.619 0.00 0.00 0.00 2.40
206 207 1.438651 TGCACAGTCAACCGCTAATC 58.561 50.000 0.00 0.00 0.00 1.75
207 208 1.739466 CATGCACAGTCAACCGCTAAT 59.261 47.619 0.00 0.00 0.00 1.73
208 209 1.155889 CATGCACAGTCAACCGCTAA 58.844 50.000 0.00 0.00 0.00 3.09
209 210 1.298157 GCATGCACAGTCAACCGCTA 61.298 55.000 14.21 0.00 0.00 4.26
210 211 2.620112 GCATGCACAGTCAACCGCT 61.620 57.895 14.21 0.00 0.00 5.52
211 212 2.126734 GCATGCACAGTCAACCGC 60.127 61.111 14.21 0.00 0.00 5.68
212 213 0.455464 CATGCATGCACAGTCAACCG 60.455 55.000 25.37 0.00 0.00 4.44
213 214 0.599558 ACATGCATGCACAGTCAACC 59.400 50.000 25.37 0.00 0.00 3.77
214 215 1.001048 ACACATGCATGCACAGTCAAC 60.001 47.619 25.37 0.00 0.00 3.18
215 216 1.267533 GACACATGCATGCACAGTCAA 59.732 47.619 29.34 8.70 0.00 3.18
216 217 0.876399 GACACATGCATGCACAGTCA 59.124 50.000 29.34 9.35 0.00 3.41
217 218 0.169672 GGACACATGCATGCACAGTC 59.830 55.000 27.72 27.72 0.00 3.51
218 219 1.246056 GGGACACATGCATGCACAGT 61.246 55.000 25.37 21.53 0.00 3.55
219 220 1.245376 TGGGACACATGCATGCACAG 61.245 55.000 25.37 20.82 0.00 3.66
220 221 1.228490 TGGGACACATGCATGCACA 60.228 52.632 25.37 14.76 0.00 4.57
221 222 3.684113 TGGGACACATGCATGCAC 58.316 55.556 25.37 16.57 0.00 4.57
236 237 2.520536 GGATCGATCCCCTGGGTGG 61.521 68.421 30.80 0.00 41.20 4.61
237 238 2.872388 CGGATCGATCCCCTGGGTG 61.872 68.421 33.51 17.07 44.24 4.61
238 239 2.524394 CGGATCGATCCCCTGGGT 60.524 66.667 33.51 0.00 44.24 4.51
239 240 2.524394 ACGGATCGATCCCCTGGG 60.524 66.667 33.51 22.92 44.24 4.45
240 241 2.574955 GGACGGATCGATCCCCTGG 61.575 68.421 33.51 23.26 44.24 4.45
241 242 1.810606 CTGGACGGATCGATCCCCTG 61.811 65.000 33.51 27.52 44.24 4.45
242 243 1.531840 CTGGACGGATCGATCCCCT 60.532 63.158 33.51 21.42 44.24 4.79
243 244 3.052081 CTGGACGGATCGATCCCC 58.948 66.667 33.51 28.99 44.24 4.81
244 245 2.340443 GCTGGACGGATCGATCCC 59.660 66.667 33.51 22.28 44.24 3.85
245 246 2.049985 CGCTGGACGGATCGATCC 60.050 66.667 31.04 31.04 43.65 3.36
255 256 2.668550 GGGGACACAACGCTGGAC 60.669 66.667 0.00 0.00 0.00 4.02
256 257 3.164977 TGGGGACACAACGCTGGA 61.165 61.111 0.00 0.00 33.40 3.86
264 265 3.625571 CCAAGCTGGAATGGGGACACA 62.626 57.143 0.00 0.00 42.02 3.72
265 266 0.967380 CCAAGCTGGAATGGGGACAC 60.967 60.000 0.00 0.00 42.02 3.67
266 267 1.383799 CCAAGCTGGAATGGGGACA 59.616 57.895 0.00 0.00 43.15 4.02
267 268 2.054453 GCCAAGCTGGAATGGGGAC 61.054 63.158 4.36 0.00 40.96 4.46
268 269 2.360191 GCCAAGCTGGAATGGGGA 59.640 61.111 4.36 0.00 40.96 4.81
269 270 2.037687 TGCCAAGCTGGAATGGGG 59.962 61.111 4.36 0.00 40.96 4.96
270 271 2.718073 GCTGCCAAGCTGGAATGGG 61.718 63.158 4.36 0.00 46.60 4.00
271 272 2.890371 GCTGCCAAGCTGGAATGG 59.110 61.111 6.40 2.17 46.60 3.16
280 281 0.108472 TCAGTCGATCTGCTGCCAAG 60.108 55.000 9.34 0.00 43.32 3.61
281 282 0.321346 TTCAGTCGATCTGCTGCCAA 59.679 50.000 9.34 0.00 43.32 4.52
282 283 0.321346 TTTCAGTCGATCTGCTGCCA 59.679 50.000 9.34 0.00 43.32 4.92
283 284 0.723981 GTTTCAGTCGATCTGCTGCC 59.276 55.000 9.34 0.00 43.32 4.85
284 285 1.432514 TGTTTCAGTCGATCTGCTGC 58.567 50.000 9.34 0.00 43.32 5.25
285 286 4.472691 TTTTGTTTCAGTCGATCTGCTG 57.527 40.909 9.34 6.96 43.32 4.41
286 287 5.695851 AATTTTGTTTCAGTCGATCTGCT 57.304 34.783 9.34 0.00 43.32 4.24
287 288 5.687285 ACAAATTTTGTTTCAGTCGATCTGC 59.313 36.000 8.97 0.00 42.22 4.26
288 289 6.345250 GCACAAATTTTGTTTCAGTCGATCTG 60.345 38.462 12.02 8.24 43.23 2.90
289 290 5.687285 GCACAAATTTTGTTTCAGTCGATCT 59.313 36.000 12.02 0.00 43.23 2.75
290 291 5.687285 AGCACAAATTTTGTTTCAGTCGATC 59.313 36.000 12.02 0.00 43.23 3.69
291 292 5.591099 AGCACAAATTTTGTTTCAGTCGAT 58.409 33.333 12.02 0.00 43.23 3.59
292 293 4.992688 AGCACAAATTTTGTTTCAGTCGA 58.007 34.783 12.02 0.00 43.23 4.20
293 294 4.797868 TGAGCACAAATTTTGTTTCAGTCG 59.202 37.500 12.02 1.20 43.23 4.18
294 295 6.264909 CTGAGCACAAATTTTGTTTCAGTC 57.735 37.500 26.76 15.63 43.23 3.51
297 298 4.797868 CGACTGAGCACAAATTTTGTTTCA 59.202 37.500 12.02 15.88 43.23 2.69
298 299 5.034152 TCGACTGAGCACAAATTTTGTTTC 58.966 37.500 12.02 12.65 43.23 2.78
299 300 4.992688 TCGACTGAGCACAAATTTTGTTT 58.007 34.783 12.02 4.14 43.23 2.83
300 301 4.630894 TCGACTGAGCACAAATTTTGTT 57.369 36.364 12.02 0.00 43.23 2.83
301 302 4.836125 ATCGACTGAGCACAAATTTTGT 57.164 36.364 8.97 8.97 46.75 2.83
302 303 5.214417 TCAATCGACTGAGCACAAATTTTG 58.786 37.500 7.59 7.59 0.00 2.44
303 304 5.437289 TCAATCGACTGAGCACAAATTTT 57.563 34.783 0.00 0.00 0.00 1.82
304 305 5.437289 TTCAATCGACTGAGCACAAATTT 57.563 34.783 0.00 0.00 0.00 1.82
305 306 5.215160 GTTTCAATCGACTGAGCACAAATT 58.785 37.500 0.00 0.00 0.00 1.82
306 307 4.275689 TGTTTCAATCGACTGAGCACAAAT 59.724 37.500 8.12 0.00 0.00 2.32
307 308 3.625313 TGTTTCAATCGACTGAGCACAAA 59.375 39.130 8.12 0.00 0.00 2.83
308 309 3.202097 TGTTTCAATCGACTGAGCACAA 58.798 40.909 8.12 0.00 0.00 3.33
309 310 2.832563 TGTTTCAATCGACTGAGCACA 58.167 42.857 6.82 6.82 0.00 4.57
310 311 3.878086 TTGTTTCAATCGACTGAGCAC 57.122 42.857 0.00 0.00 0.00 4.40
311 312 5.437289 AATTTGTTTCAATCGACTGAGCA 57.563 34.783 0.00 0.00 0.00 4.26
312 313 6.198966 ACAAAATTTGTTTCAATCGACTGAGC 59.801 34.615 5.41 0.00 42.22 4.26
313 314 7.684062 ACAAAATTTGTTTCAATCGACTGAG 57.316 32.000 5.41 0.00 42.22 3.35
335 336 9.591792 CAGACTATAGATCAGTCAATTGAAACA 57.408 33.333 10.35 0.00 44.03 2.83
336 337 9.593134 ACAGACTATAGATCAGTCAATTGAAAC 57.407 33.333 10.35 0.00 44.03 2.78
337 338 9.809096 GACAGACTATAGATCAGTCAATTGAAA 57.191 33.333 10.35 0.00 44.03 2.69
338 339 8.417106 GGACAGACTATAGATCAGTCAATTGAA 58.583 37.037 10.35 0.00 44.03 2.69
339 340 7.014711 GGGACAGACTATAGATCAGTCAATTGA 59.985 40.741 19.48 3.38 44.03 2.57
340 341 7.151308 GGGACAGACTATAGATCAGTCAATTG 58.849 42.308 19.48 0.00 44.03 2.32
341 342 6.015856 CGGGACAGACTATAGATCAGTCAATT 60.016 42.308 19.48 0.00 44.03 2.32
342 343 5.475220 CGGGACAGACTATAGATCAGTCAAT 59.525 44.000 19.48 2.13 44.03 2.57
343 344 4.822350 CGGGACAGACTATAGATCAGTCAA 59.178 45.833 19.48 0.00 44.03 3.18
344 345 4.102681 TCGGGACAGACTATAGATCAGTCA 59.897 45.833 19.48 6.39 44.03 3.41
345 346 4.643463 TCGGGACAGACTATAGATCAGTC 58.357 47.826 6.78 11.74 42.30 3.51
346 347 4.708576 TCGGGACAGACTATAGATCAGT 57.291 45.455 6.78 3.67 0.00 3.41
347 348 5.475220 ACATTCGGGACAGACTATAGATCAG 59.525 44.000 6.78 0.49 0.00 2.90
348 349 5.386060 ACATTCGGGACAGACTATAGATCA 58.614 41.667 6.78 0.00 0.00 2.92
349 350 5.968528 ACATTCGGGACAGACTATAGATC 57.031 43.478 6.78 0.59 0.00 2.75
350 351 6.732896 AAACATTCGGGACAGACTATAGAT 57.267 37.500 6.78 0.00 0.00 1.98
351 352 6.540438 AAAACATTCGGGACAGACTATAGA 57.460 37.500 6.78 0.00 0.00 1.98
352 353 6.816640 TCAAAAACATTCGGGACAGACTATAG 59.183 38.462 0.00 0.00 0.00 1.31
353 354 6.592607 GTCAAAAACATTCGGGACAGACTATA 59.407 38.462 0.00 0.00 0.00 1.31
354 355 5.411669 GTCAAAAACATTCGGGACAGACTAT 59.588 40.000 0.00 0.00 0.00 2.12
355 356 4.753107 GTCAAAAACATTCGGGACAGACTA 59.247 41.667 0.00 0.00 0.00 2.59
356 357 3.564225 GTCAAAAACATTCGGGACAGACT 59.436 43.478 0.00 0.00 0.00 3.24
357 358 3.314080 TGTCAAAAACATTCGGGACAGAC 59.686 43.478 0.00 0.00 31.20 3.51
358 359 3.314080 GTGTCAAAAACATTCGGGACAGA 59.686 43.478 0.00 0.00 40.80 3.41
359 360 3.550030 GGTGTCAAAAACATTCGGGACAG 60.550 47.826 0.00 0.00 40.80 3.51
360 361 2.359531 GGTGTCAAAAACATTCGGGACA 59.640 45.455 0.00 0.00 40.80 4.02
361 362 2.359531 TGGTGTCAAAAACATTCGGGAC 59.640 45.455 0.00 0.00 40.80 4.46
362 363 2.621055 CTGGTGTCAAAAACATTCGGGA 59.379 45.455 0.00 0.00 40.80 5.14
363 364 2.360801 ACTGGTGTCAAAAACATTCGGG 59.639 45.455 0.00 0.00 40.80 5.14
364 365 3.181491 ACACTGGTGTCAAAAACATTCGG 60.181 43.478 0.01 0.00 40.24 4.30
365 366 4.027572 ACACTGGTGTCAAAAACATTCG 57.972 40.909 0.01 0.00 40.24 3.34
366 367 6.131544 ACTACACTGGTGTCAAAAACATTC 57.868 37.500 9.77 0.00 43.74 2.67
367 368 6.524101 AACTACACTGGTGTCAAAAACATT 57.476 33.333 9.77 0.00 43.74 2.71
368 369 6.524101 AAACTACACTGGTGTCAAAAACAT 57.476 33.333 9.77 0.00 43.74 2.71
369 370 5.968528 AAACTACACTGGTGTCAAAAACA 57.031 34.783 9.77 0.00 43.74 2.83
370 371 8.745464 TTTTAAACTACACTGGTGTCAAAAAC 57.255 30.769 9.77 0.00 43.74 2.43
371 372 9.194271 GTTTTTAAACTACACTGGTGTCAAAAA 57.806 29.630 9.77 11.86 43.74 1.94
372 373 7.537991 CGTTTTTAAACTACACTGGTGTCAAAA 59.462 33.333 9.77 7.56 36.58 2.44
373 374 7.022384 CGTTTTTAAACTACACTGGTGTCAAA 58.978 34.615 9.77 2.59 36.58 2.69
374 375 6.149142 ACGTTTTTAAACTACACTGGTGTCAA 59.851 34.615 9.77 0.00 36.58 3.18
375 376 5.642919 ACGTTTTTAAACTACACTGGTGTCA 59.357 36.000 9.77 0.00 36.58 3.58
376 377 6.110543 ACGTTTTTAAACTACACTGGTGTC 57.889 37.500 9.77 0.00 36.58 3.67
377 378 6.372381 AGAACGTTTTTAAACTACACTGGTGT 59.628 34.615 0.46 11.20 38.90 4.16
378 379 6.778108 AGAACGTTTTTAAACTACACTGGTG 58.222 36.000 0.46 0.00 36.77 4.17
379 380 6.990341 AGAACGTTTTTAAACTACACTGGT 57.010 33.333 0.46 0.00 36.77 4.00
392 393 9.218440 TCCGTCCTAAAATATAAGAACGTTTTT 57.782 29.630 9.22 9.22 0.00 1.94
393 394 8.776376 TCCGTCCTAAAATATAAGAACGTTTT 57.224 30.769 0.46 0.00 0.00 2.43
394 395 7.493645 CCTCCGTCCTAAAATATAAGAACGTTT 59.506 37.037 0.46 0.00 0.00 3.60
395 396 6.982724 CCTCCGTCCTAAAATATAAGAACGTT 59.017 38.462 0.00 0.00 0.00 3.99
396 397 6.097412 ACCTCCGTCCTAAAATATAAGAACGT 59.903 38.462 0.00 0.00 0.00 3.99
397 398 6.510536 ACCTCCGTCCTAAAATATAAGAACG 58.489 40.000 0.00 0.00 0.00 3.95
398 399 8.637099 ACTACCTCCGTCCTAAAATATAAGAAC 58.363 37.037 0.00 0.00 0.00 3.01
399 400 8.773033 ACTACCTCCGTCCTAAAATATAAGAA 57.227 34.615 0.00 0.00 0.00 2.52
400 401 9.289782 GTACTACCTCCGTCCTAAAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
401 402 9.294614 AGTACTACCTCCGTCCTAAAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
402 403 9.646522 AAGTACTACCTCCGTCCTAAAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
404 405 9.819754 ATAAGTACTACCTCCGTCCTAAAATAT 57.180 33.333 0.00 0.00 0.00 1.28
405 406 9.289782 GATAAGTACTACCTCCGTCCTAAAATA 57.710 37.037 0.00 0.00 0.00 1.40
406 407 7.781693 TGATAAGTACTACCTCCGTCCTAAAAT 59.218 37.037 0.00 0.00 0.00 1.82
407 408 7.118723 TGATAAGTACTACCTCCGTCCTAAAA 58.881 38.462 0.00 0.00 0.00 1.52
408 409 6.662755 TGATAAGTACTACCTCCGTCCTAAA 58.337 40.000 0.00 0.00 0.00 1.85
409 410 6.252599 TGATAAGTACTACCTCCGTCCTAA 57.747 41.667 0.00 0.00 0.00 2.69
410 411 5.221803 CCTGATAAGTACTACCTCCGTCCTA 60.222 48.000 0.00 0.00 0.00 2.94
411 412 4.446023 CCTGATAAGTACTACCTCCGTCCT 60.446 50.000 0.00 0.00 0.00 3.85
412 413 3.819902 CCTGATAAGTACTACCTCCGTCC 59.180 52.174 0.00 0.00 0.00 4.79
413 414 4.459330 ACCTGATAAGTACTACCTCCGTC 58.541 47.826 0.00 0.00 0.00 4.79
414 415 4.516652 ACCTGATAAGTACTACCTCCGT 57.483 45.455 0.00 0.00 0.00 4.69
415 416 4.024218 CGAACCTGATAAGTACTACCTCCG 60.024 50.000 0.00 0.00 0.00 4.63
416 417 5.128919 TCGAACCTGATAAGTACTACCTCC 58.871 45.833 0.00 0.00 0.00 4.30
417 418 6.880942 ATCGAACCTGATAAGTACTACCTC 57.119 41.667 0.00 0.00 0.00 3.85
418 419 8.216423 TCTAATCGAACCTGATAAGTACTACCT 58.784 37.037 0.00 0.00 0.00 3.08
419 420 8.388484 TCTAATCGAACCTGATAAGTACTACC 57.612 38.462 0.00 0.00 0.00 3.18
422 423 8.196103 GGTTTCTAATCGAACCTGATAAGTACT 58.804 37.037 0.00 0.00 0.00 2.73
423 424 7.977853 TGGTTTCTAATCGAACCTGATAAGTAC 59.022 37.037 3.53 0.00 0.00 2.73
429 430 4.770795 CCTGGTTTCTAATCGAACCTGAT 58.229 43.478 9.44 0.00 30.62 2.90
438 439 7.391148 TGTATTTGAAGCCTGGTTTCTAATC 57.609 36.000 26.52 20.09 32.94 1.75
485 486 6.657541 GTGAACTCCTATAAACATGTTCCCAA 59.342 38.462 12.39 0.00 34.63 4.12
487 488 6.415573 AGTGAACTCCTATAAACATGTTCCC 58.584 40.000 12.39 0.00 34.63 3.97
491 492 7.545965 CGAGAAAGTGAACTCCTATAAACATGT 59.454 37.037 0.00 0.00 0.00 3.21
503 504 8.010540 GGTAGAAAAATTCGAGAAAGTGAACTC 58.989 37.037 0.00 0.00 34.02 3.01
516 517 1.326548 CCTCGCCGGTAGAAAAATTCG 59.673 52.381 1.90 0.00 34.02 3.34
538 539 3.214696 CCTATTTTCTAGGCCACCCTG 57.785 52.381 5.01 0.00 42.90 4.45
590 591 6.373779 ACTTTGTGCTGTCGAAATAAATCTG 58.626 36.000 0.00 0.00 0.00 2.90
602 603 4.814771 ACTAGTTTGGTACTTTGTGCTGTC 59.185 41.667 0.00 0.00 38.33 3.51
603 604 4.574828 CACTAGTTTGGTACTTTGTGCTGT 59.425 41.667 0.00 0.00 38.33 4.40
604 605 4.024048 CCACTAGTTTGGTACTTTGTGCTG 60.024 45.833 0.00 0.00 38.08 4.41
605 606 4.134563 CCACTAGTTTGGTACTTTGTGCT 58.865 43.478 0.00 0.00 38.08 4.40
606 607 3.252458 CCCACTAGTTTGGTACTTTGTGC 59.748 47.826 0.00 0.00 38.08 4.57
617 618 3.264450 ACTTGGATCCTCCCACTAGTTTG 59.736 47.826 14.23 0.00 35.03 2.93
621 622 3.643237 TGTACTTGGATCCTCCCACTAG 58.357 50.000 14.23 1.85 35.03 2.57
676 677 8.983724 GGCTCACTCATGAAAATTAGAGTATAC 58.016 37.037 0.00 0.00 39.17 1.47
710 751 6.627087 TGGAGATTTCAAGATAGGAACAGT 57.373 37.500 0.00 0.00 0.00 3.55
780 821 4.545610 TGTTTCTTCGATTGGTTTGATGC 58.454 39.130 0.00 0.00 0.00 3.91
802 843 7.608308 TTTCTTTTGCTGCATTGTTTACTTT 57.392 28.000 1.84 0.00 0.00 2.66
820 861 5.424757 GCTAAGTGGGGTTTTGTTTTCTTT 58.575 37.500 0.00 0.00 0.00 2.52
881 922 5.129320 GGTTGGATGATCCTTATTTTTGGCT 59.871 40.000 13.44 0.00 37.46 4.75
927 968 3.110178 GGGTCGTTCGCTTGGTCG 61.110 66.667 0.00 0.00 0.00 4.79
928 969 1.737008 GAGGGTCGTTCGCTTGGTC 60.737 63.158 2.38 0.00 39.46 4.02
942 992 0.179936 GTGGCCTGAGAATGAGAGGG 59.820 60.000 3.32 0.00 0.00 4.30
963 1013 1.153667 CTCTGCGAAGAGAGTGGCC 60.154 63.158 16.09 0.00 38.13 5.36
987 1037 1.591703 GTCCATCGTGCCTGACTGA 59.408 57.895 0.00 0.00 0.00 3.41
990 1040 1.517257 CTCGTCCATCGTGCCTGAC 60.517 63.158 0.00 0.00 40.80 3.51
993 1043 2.680352 ACCTCGTCCATCGTGCCT 60.680 61.111 0.00 0.00 40.80 4.75
996 1046 2.094659 GTGCACCTCGTCCATCGTG 61.095 63.158 5.22 0.00 40.80 4.35
1186 1236 0.038890 GCCTGCTTCTTCCCTTCCTT 59.961 55.000 0.00 0.00 0.00 3.36
1191 1241 4.416738 GCCGCCTGCTTCTTCCCT 62.417 66.667 0.00 0.00 36.87 4.20
1439 1489 4.156622 CGTCGTCGTCAGCGCCTA 62.157 66.667 2.29 0.00 38.14 3.93
1442 1492 3.598562 CATCGTCGTCGTCAGCGC 61.599 66.667 0.00 0.00 38.14 5.92
1446 1496 2.202260 GCGTCATCGTCGTCGTCA 60.202 61.111 1.33 0.00 39.49 4.35
1515 1565 0.107116 GCTCCTCGTCCTCCACTCTA 60.107 60.000 0.00 0.00 0.00 2.43
1665 1715 4.429212 CGCCGGTGATCCACGTCA 62.429 66.667 10.20 0.00 34.83 4.35
1847 1898 1.294138 GTTGTAGTACCCGCCTGCA 59.706 57.895 0.00 0.00 0.00 4.41
1893 1944 4.444024 CATTGTGGACGGTGCGCG 62.444 66.667 0.00 0.00 0.00 6.86
1960 2017 5.835257 TGTTTCAAGCCTTCAAGAATTCTG 58.165 37.500 9.17 3.74 0.00 3.02
1980 2037 9.908152 GCACCTCTGTATTTATTTTACTTTGTT 57.092 29.630 0.00 0.00 0.00 2.83
2020 2077 0.971386 TACACAAAGAGGGGGACGAC 59.029 55.000 0.00 0.00 0.00 4.34
2023 2080 2.092323 GCAATACACAAAGAGGGGGAC 58.908 52.381 0.00 0.00 0.00 4.46
2049 2106 3.686241 CGCAATTCATTTGTGAGAGGAGA 59.314 43.478 0.00 0.00 46.63 3.71
2066 2123 1.754226 AGACCACCAAACAAACGCAAT 59.246 42.857 0.00 0.00 0.00 3.56
2074 2131 3.500448 TGAGCAATAGACCACCAAACA 57.500 42.857 0.00 0.00 0.00 2.83
2113 2170 7.657336 TGAACCTTCAGAATAAATTTGTGTCC 58.343 34.615 0.00 0.00 32.50 4.02
2128 2185 9.653287 TGTTTTATACTACTGATGAACCTTCAG 57.347 33.333 7.91 7.91 44.95 3.02
2207 2264 4.335082 TTTTGACATCGCATAACTTCGG 57.665 40.909 0.00 0.00 0.00 4.30
2287 2345 0.865769 GACGTGTCATTGGCTCGTTT 59.134 50.000 18.02 0.00 36.43 3.60
2316 2374 1.614241 GCCAGCTTCGGTAGGAGGAA 61.614 60.000 0.00 0.00 0.00 3.36
2325 2383 1.302832 AAGGTCAAGCCAGCTTCGG 60.303 57.895 0.90 0.00 40.61 4.30
2368 2426 3.698029 GGTCCTTAGCGACACGTATAA 57.302 47.619 0.00 0.00 34.24 0.98
2390 2448 9.310716 AGATTACTTTAACGAATACAGTTAGGC 57.689 33.333 0.00 0.00 35.75 3.93
2396 2454 9.069078 TCGTTCAGATTACTTTAACGAATACAG 57.931 33.333 6.17 0.00 42.99 2.74
2402 2460 7.231607 GCATTTCGTTCAGATTACTTTAACGA 58.768 34.615 4.66 4.66 43.60 3.85
2417 2475 5.283012 GTCCAAATAAACTCGCATTTCGTTC 59.717 40.000 0.00 0.00 39.67 3.95
2427 2485 4.684242 GGCCTTTTTGTCCAAATAAACTCG 59.316 41.667 0.00 0.00 0.00 4.18
2430 2488 3.743911 CGGGCCTTTTTGTCCAAATAAAC 59.256 43.478 0.84 0.00 0.00 2.01
2451 2510 2.732468 CATGGCTCGCCGAGATCG 60.732 66.667 20.05 0.00 39.42 3.69
2463 2522 0.748005 ACCGCTACATGTTCCATGGC 60.748 55.000 6.96 0.00 0.00 4.40
2464 2523 2.612212 GTTACCGCTACATGTTCCATGG 59.388 50.000 4.97 4.97 0.00 3.66
2466 2525 3.196901 TCTGTTACCGCTACATGTTCCAT 59.803 43.478 2.30 0.00 0.00 3.41
2494 2553 0.234106 CATTGCGAGCGCTAATCTGG 59.766 55.000 11.50 0.00 42.51 3.86
2505 2564 4.505313 TGTATAGTCTAGGCATTGCGAG 57.495 45.455 1.91 2.78 0.00 5.03
2507 2566 6.156519 TGTTATGTATAGTCTAGGCATTGCG 58.843 40.000 1.91 0.00 0.00 4.85
2527 2586 0.249531 TCTCGCCTTGCACGTTGTTA 60.250 50.000 0.00 0.00 0.00 2.41
2566 2625 3.243334 GCTACAACCCTATCCGTAGTGTC 60.243 52.174 0.00 0.00 34.98 3.67
2577 2636 2.287274 TGCTGCCGCTACAACCCTA 61.287 57.895 0.70 0.00 36.97 3.53
2600 2659 3.903714 TCAAAACAGATCACTCCCTCTCA 59.096 43.478 0.00 0.00 0.00 3.27
2602 2661 4.103153 TGTTCAAAACAGATCACTCCCTCT 59.897 41.667 0.00 0.00 36.25 3.69
2603 2662 4.214332 GTGTTCAAAACAGATCACTCCCTC 59.786 45.833 0.00 0.00 43.10 4.30
2625 2686 0.388649 CCGCTCGCTACAACTTCAGT 60.389 55.000 0.00 0.00 0.00 3.41
2638 2699 2.551270 GTTTGTCTGTGCCGCTCG 59.449 61.111 0.00 0.00 0.00 5.03
2649 2710 3.306710 GGGATTTGAATGTGGGGTTTGTC 60.307 47.826 0.00 0.00 0.00 3.18
2652 2713 2.905736 CAGGGATTTGAATGTGGGGTTT 59.094 45.455 0.00 0.00 0.00 3.27
2663 2724 6.091076 AGGGTATCAATTTCAGGGATTTGA 57.909 37.500 0.00 0.00 0.00 2.69
2695 2756 5.536916 CCAAGGTCTAGATTTACCGAGATCT 59.463 44.000 0.00 0.00 40.88 2.75
2716 2777 4.877619 TGCGCCAAACGGGTCCAA 62.878 61.111 4.18 0.00 43.93 3.53
2765 2826 1.815421 GTGCATGTGGGAGTAGCGG 60.815 63.158 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.