Multiple sequence alignment - TraesCS2B01G190400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G190400 | chr2B | 100.000 | 3390 | 0 | 0 | 1 | 3390 | 166042862 | 166039473 | 0.000000e+00 | 6261.0 |
1 | TraesCS2B01G190400 | chr2B | 94.574 | 129 | 5 | 2 | 3262 | 3390 | 24762826 | 24762952 | 7.420000e-47 | 198.0 |
2 | TraesCS2B01G190400 | chr2B | 97.345 | 113 | 3 | 0 | 3278 | 3390 | 166034165 | 166034277 | 3.450000e-45 | 193.0 |
3 | TraesCS2B01G190400 | chr2D | 91.120 | 1813 | 56 | 30 | 1528 | 3279 | 115579723 | 115577955 | 0.000000e+00 | 2359.0 |
4 | TraesCS2B01G190400 | chr2D | 86.190 | 840 | 54 | 24 | 621 | 1444 | 115580556 | 115579763 | 0.000000e+00 | 852.0 |
5 | TraesCS2B01G190400 | chr2D | 96.262 | 107 | 4 | 0 | 303 | 409 | 115581225 | 115581119 | 3.480000e-40 | 176.0 |
6 | TraesCS2B01G190400 | chr2D | 86.897 | 145 | 15 | 3 | 218 | 362 | 115581338 | 115581198 | 3.500000e-35 | 159.0 |
7 | TraesCS2B01G190400 | chr2D | 93.243 | 74 | 5 | 0 | 2936 | 3009 | 115578399 | 115578326 | 3.580000e-20 | 110.0 |
8 | TraesCS2B01G190400 | chr2D | 88.158 | 76 | 6 | 2 | 373 | 445 | 115581377 | 115581302 | 1.680000e-13 | 87.9 |
9 | TraesCS2B01G190400 | chr2A | 91.333 | 923 | 46 | 15 | 2089 | 2985 | 117155785 | 117154871 | 0.000000e+00 | 1230.0 |
10 | TraesCS2B01G190400 | chr2A | 89.163 | 729 | 42 | 17 | 1270 | 1982 | 117156520 | 117155813 | 0.000000e+00 | 874.0 |
11 | TraesCS2B01G190400 | chr2A | 91.304 | 345 | 11 | 5 | 912 | 1255 | 117156833 | 117156507 | 1.430000e-123 | 453.0 |
12 | TraesCS2B01G190400 | chr2A | 93.333 | 285 | 12 | 2 | 300 | 578 | 117157388 | 117157105 | 6.770000e-112 | 414.0 |
13 | TraesCS2B01G190400 | chr2A | 89.236 | 288 | 16 | 7 | 601 | 874 | 117157118 | 117156832 | 2.500000e-91 | 346.0 |
14 | TraesCS2B01G190400 | chr2A | 86.093 | 302 | 16 | 6 | 2981 | 3279 | 117121405 | 117121127 | 5.500000e-78 | 302.0 |
15 | TraesCS2B01G190400 | chr3B | 91.121 | 214 | 17 | 2 | 3067 | 3279 | 11529207 | 11528995 | 4.280000e-74 | 289.0 |
16 | TraesCS2B01G190400 | chr3B | 89.498 | 219 | 17 | 4 | 3065 | 3279 | 720999608 | 720999392 | 4.310000e-69 | 272.0 |
17 | TraesCS2B01G190400 | chr3B | 89.157 | 83 | 9 | 0 | 2942 | 3024 | 110721687 | 110721769 | 1.660000e-18 | 104.0 |
18 | TraesCS2B01G190400 | chr5B | 90.741 | 216 | 18 | 2 | 3065 | 3279 | 570585860 | 570586074 | 1.540000e-73 | 287.0 |
19 | TraesCS2B01G190400 | chr5B | 82.917 | 240 | 22 | 10 | 2715 | 2936 | 562485952 | 562485714 | 7.420000e-47 | 198.0 |
20 | TraesCS2B01G190400 | chr5B | 97.345 | 113 | 3 | 0 | 3278 | 3390 | 98321655 | 98321543 | 3.450000e-45 | 193.0 |
21 | TraesCS2B01G190400 | chr5B | 92.373 | 118 | 9 | 0 | 2819 | 2936 | 314995243 | 314995360 | 5.820000e-38 | 169.0 |
22 | TraesCS2B01G190400 | chr5B | 79.012 | 243 | 30 | 11 | 2719 | 2941 | 536200824 | 536200583 | 2.730000e-31 | 147.0 |
23 | TraesCS2B01G190400 | chr3A | 90.323 | 217 | 18 | 3 | 3065 | 3279 | 510833521 | 510833736 | 7.160000e-72 | 281.0 |
24 | TraesCS2B01G190400 | chr5A | 88.889 | 216 | 21 | 3 | 3065 | 3279 | 415186370 | 415186157 | 2.590000e-66 | 263.0 |
25 | TraesCS2B01G190400 | chr5A | 82.759 | 232 | 21 | 11 | 2723 | 2936 | 581472159 | 581471929 | 4.470000e-44 | 189.0 |
26 | TraesCS2B01G190400 | chr5A | 88.764 | 89 | 10 | 0 | 2936 | 3024 | 660719737 | 660719825 | 3.580000e-20 | 110.0 |
27 | TraesCS2B01G190400 | chr5D | 83.898 | 236 | 19 | 10 | 2719 | 2936 | 234817441 | 234817207 | 1.230000e-49 | 207.0 |
28 | TraesCS2B01G190400 | chr5D | 82.627 | 236 | 22 | 11 | 2719 | 2936 | 430973202 | 430972968 | 1.240000e-44 | 191.0 |
29 | TraesCS2B01G190400 | chr5D | 81.356 | 236 | 24 | 8 | 2719 | 2936 | 33044429 | 33044196 | 1.250000e-39 | 174.0 |
30 | TraesCS2B01G190400 | chr7A | 82.979 | 235 | 22 | 10 | 2719 | 2936 | 239399615 | 239399382 | 2.670000e-46 | 196.0 |
31 | TraesCS2B01G190400 | chr7A | 82.553 | 235 | 23 | 10 | 2719 | 2936 | 239268501 | 239268268 | 1.240000e-44 | 191.0 |
32 | TraesCS2B01G190400 | chr7A | 87.129 | 101 | 10 | 3 | 2719 | 2818 | 250029360 | 250029458 | 9.940000e-21 | 111.0 |
33 | TraesCS2B01G190400 | chrUn | 97.345 | 113 | 3 | 0 | 3278 | 3390 | 256261758 | 256261646 | 3.450000e-45 | 193.0 |
34 | TraesCS2B01G190400 | chr7B | 97.345 | 113 | 3 | 0 | 3278 | 3390 | 693702192 | 693702304 | 3.450000e-45 | 193.0 |
35 | TraesCS2B01G190400 | chr7B | 95.726 | 117 | 4 | 1 | 3274 | 3390 | 33891644 | 33891529 | 1.610000e-43 | 187.0 |
36 | TraesCS2B01G190400 | chr7B | 90.000 | 80 | 8 | 0 | 2942 | 3021 | 600312840 | 600312919 | 1.660000e-18 | 104.0 |
37 | TraesCS2B01G190400 | chr7B | 90.000 | 80 | 8 | 0 | 2942 | 3021 | 600365467 | 600365546 | 1.660000e-18 | 104.0 |
38 | TraesCS2B01G190400 | chr4B | 97.345 | 113 | 3 | 0 | 3278 | 3390 | 648228943 | 648228831 | 3.450000e-45 | 193.0 |
39 | TraesCS2B01G190400 | chr4B | 97.345 | 113 | 3 | 0 | 3278 | 3390 | 648253384 | 648253272 | 3.450000e-45 | 193.0 |
40 | TraesCS2B01G190400 | chr4B | 96.460 | 113 | 4 | 0 | 3278 | 3390 | 648203684 | 648203572 | 1.610000e-43 | 187.0 |
41 | TraesCS2B01G190400 | chr3D | 82.203 | 236 | 23 | 11 | 2719 | 2936 | 410678523 | 410678757 | 5.780000e-43 | 185.0 |
42 | TraesCS2B01G190400 | chr3D | 83.019 | 212 | 17 | 7 | 2730 | 2923 | 73397806 | 73398016 | 1.250000e-39 | 174.0 |
43 | TraesCS2B01G190400 | chr3D | 80.672 | 238 | 23 | 15 | 2719 | 2936 | 124620977 | 124621211 | 2.710000e-36 | 163.0 |
44 | TraesCS2B01G190400 | chr7D | 81.702 | 235 | 23 | 12 | 2719 | 2936 | 201784452 | 201784683 | 9.670000e-41 | 178.0 |
45 | TraesCS2B01G190400 | chr4D | 81.277 | 235 | 26 | 9 | 2719 | 2936 | 54559095 | 54558862 | 1.250000e-39 | 174.0 |
46 | TraesCS2B01G190400 | chr6D | 87.209 | 86 | 11 | 0 | 2936 | 3021 | 300823950 | 300824035 | 7.740000e-17 | 99.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G190400 | chr2B | 166039473 | 166042862 | 3389 | True | 6261.000000 | 6261 | 100.000000 | 1 | 3390 | 1 | chr2B.!!$R1 | 3389 |
1 | TraesCS2B01G190400 | chr2D | 115577955 | 115581377 | 3422 | True | 623.983333 | 2359 | 90.311667 | 218 | 3279 | 6 | chr2D.!!$R1 | 3061 |
2 | TraesCS2B01G190400 | chr2A | 117154871 | 117157388 | 2517 | True | 663.400000 | 1230 | 90.873800 | 300 | 2985 | 5 | chr2A.!!$R2 | 2685 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
93 | 94 | 0.038618 | CAAACGGGCCCTAAGTTTGC | 60.039 | 55.0 | 29.36 | 0.83 | 45.02 | 3.68 | F |
163 | 164 | 0.101399 | CTACAGACCTCGCTGCGATT | 59.899 | 55.0 | 26.15 | 15.47 | 39.51 | 3.34 | F |
1489 | 1964 | 0.103026 | CGAGATGATGAACCTCGGCA | 59.897 | 55.0 | 0.00 | 0.00 | 44.11 | 5.69 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1486 | 1961 | 0.035820 | TGTCTAATCGGTTGGGTGCC | 60.036 | 55.0 | 0.00 | 0.0 | 0.00 | 5.01 | R |
1543 | 2018 | 0.110295 | CCACACAGGTTCATGGGTCA | 59.890 | 55.0 | 0.00 | 0.0 | 33.49 | 4.02 | R |
2694 | 3197 | 0.109179 | TTGAAGCATGCCGCATTCAC | 60.109 | 50.0 | 15.66 | 0.0 | 46.13 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 3.550656 | GTGAGGAGCACCGTTTCG | 58.449 | 61.111 | 0.00 | 0.00 | 41.78 | 3.46 |
20 | 21 | 2.357034 | TGAGGAGCACCGTTTCGC | 60.357 | 61.111 | 0.00 | 0.00 | 41.83 | 4.70 |
21 | 22 | 2.357034 | GAGGAGCACCGTTTCGCA | 60.357 | 61.111 | 0.00 | 0.00 | 41.83 | 5.10 |
22 | 23 | 2.665185 | AGGAGCACCGTTTCGCAC | 60.665 | 61.111 | 0.00 | 0.00 | 41.83 | 5.34 |
30 | 31 | 3.777925 | CGTTTCGCACGCTCCCAG | 61.778 | 66.667 | 0.00 | 0.00 | 43.37 | 4.45 |
32 | 33 | 3.936203 | TTTCGCACGCTCCCAGGT | 61.936 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
34 | 35 | 2.951475 | TTTCGCACGCTCCCAGGTTT | 62.951 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
35 | 36 | 3.423154 | CGCACGCTCCCAGGTTTC | 61.423 | 66.667 | 0.00 | 0.00 | 0.00 | 2.78 |
36 | 37 | 2.032681 | GCACGCTCCCAGGTTTCT | 59.967 | 61.111 | 0.00 | 0.00 | 0.00 | 2.52 |
37 | 38 | 2.328099 | GCACGCTCCCAGGTTTCTG | 61.328 | 63.158 | 0.00 | 0.00 | 40.59 | 3.02 |
46 | 47 | 2.724520 | CAGGTTTCTGGTTGCAGCT | 58.275 | 52.632 | 0.00 | 0.00 | 37.36 | 4.24 |
47 | 48 | 0.595095 | CAGGTTTCTGGTTGCAGCTC | 59.405 | 55.000 | 0.00 | 0.00 | 37.36 | 4.09 |
48 | 49 | 0.538287 | AGGTTTCTGGTTGCAGCTCC | 60.538 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
49 | 50 | 1.576421 | GTTTCTGGTTGCAGCTCCG | 59.424 | 57.895 | 0.00 | 0.00 | 0.00 | 4.63 |
50 | 51 | 1.148273 | TTTCTGGTTGCAGCTCCGT | 59.852 | 52.632 | 0.00 | 0.00 | 0.00 | 4.69 |
51 | 52 | 0.884704 | TTTCTGGTTGCAGCTCCGTC | 60.885 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
52 | 53 | 2.731691 | TTCTGGTTGCAGCTCCGTCC | 62.732 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
53 | 54 | 4.680237 | TGGTTGCAGCTCCGTCCG | 62.680 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
56 | 57 | 4.314440 | TTGCAGCTCCGTCCGCTT | 62.314 | 61.111 | 0.00 | 0.00 | 35.07 | 4.68 |
57 | 58 | 4.742201 | TGCAGCTCCGTCCGCTTC | 62.742 | 66.667 | 0.00 | 0.00 | 35.07 | 3.86 |
80 | 81 | 4.626225 | CGGAGCAAAACCAAACGG | 57.374 | 55.556 | 0.00 | 0.00 | 0.00 | 4.44 |
81 | 82 | 1.007849 | CGGAGCAAAACCAAACGGG | 60.008 | 57.895 | 0.00 | 0.00 | 44.81 | 5.28 |
82 | 83 | 1.300620 | GGAGCAAAACCAAACGGGC | 60.301 | 57.895 | 0.00 | 0.00 | 42.05 | 6.13 |
83 | 84 | 1.300620 | GAGCAAAACCAAACGGGCC | 60.301 | 57.895 | 0.00 | 0.00 | 42.05 | 5.80 |
84 | 85 | 2.280524 | GCAAAACCAAACGGGCCC | 60.281 | 61.111 | 13.57 | 13.57 | 42.05 | 5.80 |
85 | 86 | 2.802724 | GCAAAACCAAACGGGCCCT | 61.803 | 57.895 | 22.43 | 3.67 | 42.05 | 5.19 |
86 | 87 | 1.465200 | GCAAAACCAAACGGGCCCTA | 61.465 | 55.000 | 22.43 | 0.00 | 42.05 | 3.53 |
87 | 88 | 1.041437 | CAAAACCAAACGGGCCCTAA | 58.959 | 50.000 | 22.43 | 0.00 | 42.05 | 2.69 |
88 | 89 | 1.000394 | CAAAACCAAACGGGCCCTAAG | 60.000 | 52.381 | 22.43 | 6.96 | 42.05 | 2.18 |
89 | 90 | 0.186630 | AAACCAAACGGGCCCTAAGT | 59.813 | 50.000 | 22.43 | 7.76 | 42.05 | 2.24 |
90 | 91 | 0.186630 | AACCAAACGGGCCCTAAGTT | 59.813 | 50.000 | 22.43 | 14.30 | 42.05 | 2.66 |
91 | 92 | 0.186630 | ACCAAACGGGCCCTAAGTTT | 59.813 | 50.000 | 22.43 | 19.64 | 42.05 | 2.66 |
93 | 94 | 0.038618 | CAAACGGGCCCTAAGTTTGC | 60.039 | 55.000 | 29.36 | 0.83 | 45.02 | 3.68 |
94 | 95 | 0.178973 | AAACGGGCCCTAAGTTTGCT | 60.179 | 50.000 | 22.43 | 0.00 | 36.81 | 3.91 |
95 | 96 | 0.608308 | AACGGGCCCTAAGTTTGCTC | 60.608 | 55.000 | 22.43 | 0.00 | 0.00 | 4.26 |
96 | 97 | 2.106683 | CGGGCCCTAAGTTTGCTCG | 61.107 | 63.158 | 22.43 | 0.00 | 43.15 | 5.03 |
97 | 98 | 1.002502 | GGGCCCTAAGTTTGCTCGT | 60.003 | 57.895 | 17.04 | 0.00 | 0.00 | 4.18 |
98 | 99 | 0.608308 | GGGCCCTAAGTTTGCTCGTT | 60.608 | 55.000 | 17.04 | 0.00 | 0.00 | 3.85 |
99 | 100 | 1.244816 | GGCCCTAAGTTTGCTCGTTT | 58.755 | 50.000 | 0.00 | 0.00 | 0.00 | 3.60 |
100 | 101 | 2.429478 | GGCCCTAAGTTTGCTCGTTTA | 58.571 | 47.619 | 0.00 | 0.00 | 0.00 | 2.01 |
101 | 102 | 2.161012 | GGCCCTAAGTTTGCTCGTTTAC | 59.839 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
102 | 103 | 2.809696 | GCCCTAAGTTTGCTCGTTTACA | 59.190 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
103 | 104 | 3.251487 | GCCCTAAGTTTGCTCGTTTACAA | 59.749 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
104 | 105 | 4.612939 | GCCCTAAGTTTGCTCGTTTACAAG | 60.613 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
105 | 106 | 4.083484 | CCCTAAGTTTGCTCGTTTACAAGG | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 3.61 |
106 | 107 | 4.514066 | CCTAAGTTTGCTCGTTTACAAGGT | 59.486 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
107 | 108 | 5.697633 | CCTAAGTTTGCTCGTTTACAAGGTA | 59.302 | 40.000 | 0.00 | 0.00 | 0.00 | 3.08 |
108 | 109 | 5.668558 | AAGTTTGCTCGTTTACAAGGTAG | 57.331 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
109 | 110 | 4.952460 | AGTTTGCTCGTTTACAAGGTAGA | 58.048 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
110 | 111 | 5.362263 | AGTTTGCTCGTTTACAAGGTAGAA | 58.638 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
111 | 112 | 5.235831 | AGTTTGCTCGTTTACAAGGTAGAAC | 59.764 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
112 | 113 | 4.595762 | TGCTCGTTTACAAGGTAGAACT | 57.404 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
113 | 114 | 5.710513 | TGCTCGTTTACAAGGTAGAACTA | 57.289 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
114 | 115 | 6.276832 | TGCTCGTTTACAAGGTAGAACTAT | 57.723 | 37.500 | 0.00 | 0.00 | 0.00 | 2.12 |
115 | 116 | 6.097356 | TGCTCGTTTACAAGGTAGAACTATG | 58.903 | 40.000 | 0.00 | 0.00 | 0.00 | 2.23 |
116 | 117 | 6.071784 | TGCTCGTTTACAAGGTAGAACTATGA | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 2.15 |
117 | 118 | 6.253083 | GCTCGTTTACAAGGTAGAACTATGAC | 59.747 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
118 | 119 | 7.458409 | TCGTTTACAAGGTAGAACTATGACT | 57.542 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
119 | 120 | 7.889469 | TCGTTTACAAGGTAGAACTATGACTT | 58.111 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
120 | 121 | 7.811236 | TCGTTTACAAGGTAGAACTATGACTTG | 59.189 | 37.037 | 15.32 | 15.32 | 40.66 | 3.16 |
121 | 122 | 7.063074 | CGTTTACAAGGTAGAACTATGACTTGG | 59.937 | 40.741 | 18.30 | 8.55 | 39.53 | 3.61 |
122 | 123 | 7.549147 | TTACAAGGTAGAACTATGACTTGGT | 57.451 | 36.000 | 18.30 | 11.60 | 39.53 | 3.67 |
123 | 124 | 6.435292 | ACAAGGTAGAACTATGACTTGGTT | 57.565 | 37.500 | 18.30 | 0.00 | 39.53 | 3.67 |
124 | 125 | 6.465084 | ACAAGGTAGAACTATGACTTGGTTC | 58.535 | 40.000 | 18.30 | 8.90 | 39.53 | 3.62 |
125 | 126 | 5.326200 | AGGTAGAACTATGACTTGGTTCG | 57.674 | 43.478 | 10.59 | 0.00 | 42.60 | 3.95 |
126 | 127 | 4.159879 | AGGTAGAACTATGACTTGGTTCGG | 59.840 | 45.833 | 10.59 | 0.00 | 42.60 | 4.30 |
127 | 128 | 4.081807 | GGTAGAACTATGACTTGGTTCGGT | 60.082 | 45.833 | 10.59 | 0.28 | 42.60 | 4.69 |
128 | 129 | 4.189639 | AGAACTATGACTTGGTTCGGTC | 57.810 | 45.455 | 10.59 | 0.00 | 42.60 | 4.79 |
129 | 130 | 3.056035 | AGAACTATGACTTGGTTCGGTCC | 60.056 | 47.826 | 10.59 | 0.00 | 42.60 | 4.46 |
130 | 131 | 2.253610 | ACTATGACTTGGTTCGGTCCA | 58.746 | 47.619 | 0.00 | 0.00 | 35.49 | 4.02 |
131 | 132 | 2.233922 | ACTATGACTTGGTTCGGTCCAG | 59.766 | 50.000 | 0.00 | 0.00 | 38.80 | 3.86 |
132 | 133 | 0.324943 | ATGACTTGGTTCGGTCCAGG | 59.675 | 55.000 | 7.19 | 7.19 | 38.80 | 4.45 |
133 | 134 | 1.003718 | GACTTGGTTCGGTCCAGGG | 60.004 | 63.158 | 11.82 | 6.93 | 38.62 | 4.45 |
134 | 135 | 2.359975 | CTTGGTTCGGTCCAGGGC | 60.360 | 66.667 | 0.00 | 0.00 | 38.80 | 5.19 |
135 | 136 | 3.920093 | CTTGGTTCGGTCCAGGGCC | 62.920 | 68.421 | 0.00 | 0.00 | 38.80 | 5.80 |
136 | 137 | 4.974438 | TGGTTCGGTCCAGGGCCT | 62.974 | 66.667 | 8.96 | 0.00 | 33.19 | 5.19 |
137 | 138 | 3.647771 | GGTTCGGTCCAGGGCCTT | 61.648 | 66.667 | 8.96 | 0.00 | 0.00 | 4.35 |
138 | 139 | 2.434774 | GTTCGGTCCAGGGCCTTT | 59.565 | 61.111 | 8.96 | 0.00 | 0.00 | 3.11 |
139 | 140 | 1.971695 | GTTCGGTCCAGGGCCTTTG | 60.972 | 63.158 | 8.96 | 0.00 | 0.00 | 2.77 |
140 | 141 | 3.204467 | TTCGGTCCAGGGCCTTTGG | 62.204 | 63.158 | 17.67 | 17.67 | 37.04 | 3.28 |
141 | 142 | 3.966543 | CGGTCCAGGGCCTTTGGT | 61.967 | 66.667 | 21.33 | 0.00 | 37.02 | 3.67 |
142 | 143 | 2.035783 | GGTCCAGGGCCTTTGGTC | 59.964 | 66.667 | 21.33 | 17.09 | 37.02 | 4.02 |
143 | 144 | 2.359975 | GTCCAGGGCCTTTGGTCG | 60.360 | 66.667 | 21.33 | 0.00 | 37.02 | 4.79 |
144 | 145 | 4.344865 | TCCAGGGCCTTTGGTCGC | 62.345 | 66.667 | 21.33 | 0.00 | 37.02 | 5.19 |
145 | 146 | 4.351054 | CCAGGGCCTTTGGTCGCT | 62.351 | 66.667 | 1.32 | 0.00 | 0.00 | 4.93 |
146 | 147 | 2.668632 | CAGGGCCTTTGGTCGCTA | 59.331 | 61.111 | 1.32 | 0.00 | 0.00 | 4.26 |
147 | 148 | 1.745489 | CAGGGCCTTTGGTCGCTAC | 60.745 | 63.158 | 1.32 | 0.00 | 0.00 | 3.58 |
148 | 149 | 2.221299 | AGGGCCTTTGGTCGCTACA | 61.221 | 57.895 | 0.00 | 0.00 | 0.00 | 2.74 |
149 | 150 | 1.745489 | GGGCCTTTGGTCGCTACAG | 60.745 | 63.158 | 0.84 | 0.00 | 0.00 | 2.74 |
150 | 151 | 1.295423 | GGCCTTTGGTCGCTACAGA | 59.705 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
151 | 152 | 1.019805 | GGCCTTTGGTCGCTACAGAC | 61.020 | 60.000 | 0.00 | 0.00 | 40.25 | 3.51 |
157 | 158 | 3.188965 | GTCGCTACAGACCTCGCT | 58.811 | 61.111 | 0.00 | 0.00 | 35.22 | 4.93 |
158 | 159 | 1.226435 | GTCGCTACAGACCTCGCTG | 60.226 | 63.158 | 0.00 | 0.00 | 41.63 | 5.18 |
159 | 160 | 2.580867 | CGCTACAGACCTCGCTGC | 60.581 | 66.667 | 0.00 | 0.00 | 39.51 | 5.25 |
160 | 161 | 2.580867 | GCTACAGACCTCGCTGCG | 60.581 | 66.667 | 17.25 | 17.25 | 39.51 | 5.18 |
161 | 162 | 3.052620 | GCTACAGACCTCGCTGCGA | 62.053 | 63.158 | 24.43 | 24.43 | 39.51 | 5.10 |
162 | 163 | 1.730487 | CTACAGACCTCGCTGCGAT | 59.270 | 57.895 | 26.15 | 11.99 | 39.51 | 4.58 |
163 | 164 | 0.101399 | CTACAGACCTCGCTGCGATT | 59.899 | 55.000 | 26.15 | 15.47 | 39.51 | 3.34 |
164 | 165 | 0.179137 | TACAGACCTCGCTGCGATTG | 60.179 | 55.000 | 26.15 | 20.74 | 39.51 | 2.67 |
165 | 166 | 1.153765 | CAGACCTCGCTGCGATTGA | 60.154 | 57.895 | 26.15 | 2.70 | 34.61 | 2.57 |
166 | 167 | 0.529337 | CAGACCTCGCTGCGATTGAT | 60.529 | 55.000 | 26.15 | 11.00 | 34.61 | 2.57 |
167 | 168 | 0.176680 | AGACCTCGCTGCGATTGATT | 59.823 | 50.000 | 26.15 | 7.90 | 34.61 | 2.57 |
168 | 169 | 0.302890 | GACCTCGCTGCGATTGATTG | 59.697 | 55.000 | 26.15 | 12.31 | 34.61 | 2.67 |
169 | 170 | 0.391661 | ACCTCGCTGCGATTGATTGT | 60.392 | 50.000 | 26.15 | 12.44 | 34.61 | 2.71 |
170 | 171 | 1.134818 | ACCTCGCTGCGATTGATTGTA | 60.135 | 47.619 | 26.15 | 0.00 | 34.61 | 2.41 |
171 | 172 | 2.138320 | CCTCGCTGCGATTGATTGTAT | 58.862 | 47.619 | 26.15 | 0.00 | 34.61 | 2.29 |
172 | 173 | 2.096565 | CCTCGCTGCGATTGATTGTATG | 60.097 | 50.000 | 26.15 | 9.31 | 34.61 | 2.39 |
173 | 174 | 2.796593 | CTCGCTGCGATTGATTGTATGA | 59.203 | 45.455 | 26.15 | 0.00 | 34.61 | 2.15 |
174 | 175 | 3.194062 | TCGCTGCGATTGATTGTATGAA | 58.806 | 40.909 | 22.24 | 0.00 | 0.00 | 2.57 |
175 | 176 | 3.809279 | TCGCTGCGATTGATTGTATGAAT | 59.191 | 39.130 | 22.24 | 0.00 | 0.00 | 2.57 |
176 | 177 | 4.273235 | TCGCTGCGATTGATTGTATGAATT | 59.727 | 37.500 | 22.24 | 0.00 | 0.00 | 2.17 |
177 | 178 | 4.971830 | CGCTGCGATTGATTGTATGAATTT | 59.028 | 37.500 | 18.66 | 0.00 | 0.00 | 1.82 |
178 | 179 | 5.108518 | CGCTGCGATTGATTGTATGAATTTG | 60.109 | 40.000 | 18.66 | 0.00 | 0.00 | 2.32 |
179 | 180 | 5.745294 | GCTGCGATTGATTGTATGAATTTGT | 59.255 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
180 | 181 | 6.075205 | GCTGCGATTGATTGTATGAATTTGTC | 60.075 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
181 | 182 | 5.964751 | TGCGATTGATTGTATGAATTTGTCG | 59.035 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
182 | 183 | 6.183360 | TGCGATTGATTGTATGAATTTGTCGA | 60.183 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
183 | 184 | 6.686679 | GCGATTGATTGTATGAATTTGTCGAA | 59.313 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
184 | 185 | 7.097289 | GCGATTGATTGTATGAATTTGTCGAAG | 60.097 | 37.037 | 0.00 | 0.00 | 0.00 | 3.79 |
185 | 186 | 7.904977 | CGATTGATTGTATGAATTTGTCGAAGT | 59.095 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
186 | 187 | 8.900511 | ATTGATTGTATGAATTTGTCGAAGTG | 57.099 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
187 | 188 | 7.665561 | TGATTGTATGAATTTGTCGAAGTGA | 57.334 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
188 | 189 | 7.742151 | TGATTGTATGAATTTGTCGAAGTGAG | 58.258 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
189 | 190 | 7.387673 | TGATTGTATGAATTTGTCGAAGTGAGT | 59.612 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
190 | 191 | 8.771920 | ATTGTATGAATTTGTCGAAGTGAGTA | 57.228 | 30.769 | 0.00 | 0.00 | 0.00 | 2.59 |
191 | 192 | 8.596271 | TTGTATGAATTTGTCGAAGTGAGTAA | 57.404 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
192 | 193 | 8.771920 | TGTATGAATTTGTCGAAGTGAGTAAT | 57.228 | 30.769 | 0.00 | 0.00 | 0.00 | 1.89 |
193 | 194 | 9.863845 | TGTATGAATTTGTCGAAGTGAGTAATA | 57.136 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
195 | 196 | 8.771920 | ATGAATTTGTCGAAGTGAGTAATACA | 57.228 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
196 | 197 | 8.596271 | TGAATTTGTCGAAGTGAGTAATACAA | 57.404 | 30.769 | 0.00 | 0.00 | 0.00 | 2.41 |
197 | 198 | 9.214957 | TGAATTTGTCGAAGTGAGTAATACAAT | 57.785 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
203 | 204 | 9.863845 | TGTCGAAGTGAGTAATACAATATTTCA | 57.136 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
205 | 206 | 9.309516 | TCGAAGTGAGTAATACAATATTTCACC | 57.690 | 33.333 | 9.50 | 0.00 | 35.32 | 4.02 |
206 | 207 | 8.548721 | CGAAGTGAGTAATACAATATTTCACCC | 58.451 | 37.037 | 9.50 | 3.72 | 35.32 | 4.61 |
207 | 208 | 8.433421 | AAGTGAGTAATACAATATTTCACCCG | 57.567 | 34.615 | 9.50 | 0.00 | 35.32 | 5.28 |
208 | 209 | 7.788026 | AGTGAGTAATACAATATTTCACCCGA | 58.212 | 34.615 | 9.50 | 0.00 | 35.32 | 5.14 |
209 | 210 | 8.262227 | AGTGAGTAATACAATATTTCACCCGAA | 58.738 | 33.333 | 9.50 | 0.00 | 35.32 | 4.30 |
210 | 211 | 8.885722 | GTGAGTAATACAATATTTCACCCGAAA | 58.114 | 33.333 | 3.73 | 0.00 | 44.99 | 3.46 |
211 | 212 | 9.451002 | TGAGTAATACAATATTTCACCCGAAAA | 57.549 | 29.630 | 0.00 | 0.00 | 44.12 | 2.29 |
237 | 238 | 2.627515 | ATTGTGTGGAGGGATGATCG | 57.372 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
272 | 273 | 5.172687 | TGTGTTGGCTTGGTCTAATGATA | 57.827 | 39.130 | 0.00 | 0.00 | 0.00 | 2.15 |
275 | 276 | 6.095300 | TGTGTTGGCTTGGTCTAATGATAATG | 59.905 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
277 | 278 | 7.013655 | GTGTTGGCTTGGTCTAATGATAATGAT | 59.986 | 37.037 | 0.00 | 0.00 | 0.00 | 2.45 |
278 | 279 | 7.013559 | TGTTGGCTTGGTCTAATGATAATGATG | 59.986 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
279 | 280 | 6.604171 | TGGCTTGGTCTAATGATAATGATGT | 58.396 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
280 | 281 | 7.062322 | TGGCTTGGTCTAATGATAATGATGTT | 58.938 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
282 | 283 | 7.864379 | GGCTTGGTCTAATGATAATGATGTTTG | 59.136 | 37.037 | 0.00 | 0.00 | 0.00 | 2.93 |
283 | 284 | 7.864379 | GCTTGGTCTAATGATAATGATGTTTGG | 59.136 | 37.037 | 0.00 | 0.00 | 0.00 | 3.28 |
284 | 285 | 7.822161 | TGGTCTAATGATAATGATGTTTGGG | 57.178 | 36.000 | 0.00 | 0.00 | 0.00 | 4.12 |
285 | 286 | 7.581814 | TGGTCTAATGATAATGATGTTTGGGA | 58.418 | 34.615 | 0.00 | 0.00 | 0.00 | 4.37 |
286 | 287 | 7.720957 | TGGTCTAATGATAATGATGTTTGGGAG | 59.279 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
287 | 288 | 7.721399 | GGTCTAATGATAATGATGTTTGGGAGT | 59.279 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
290 | 291 | 9.784531 | CTAATGATAATGATGTTTGGGAGTAGT | 57.215 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
316 | 317 | 8.007405 | ACTGTACCTTTGAAGCATTAACTTTT | 57.993 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
362 | 395 | 5.514274 | TTAACTTTCTGCTGGTTTCCTTG | 57.486 | 39.130 | 0.00 | 0.00 | 0.00 | 3.61 |
502 | 909 | 0.399454 | ACTTGATGTGTGCAGGCTCT | 59.601 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
549 | 996 | 3.404773 | GCTGACCCCTAAGCCAGT | 58.595 | 61.111 | 0.00 | 0.00 | 33.12 | 4.00 |
555 | 1002 | 0.345502 | ACCCCTAAGCCAGTCCCATA | 59.654 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
559 | 1006 | 1.143073 | CCTAAGCCAGTCCCATAACCC | 59.857 | 57.143 | 0.00 | 0.00 | 0.00 | 4.11 |
589 | 1036 | 9.942850 | TTTTGTTTCTTTTCTTTTTGAGGATCT | 57.057 | 25.926 | 0.00 | 0.00 | 34.92 | 2.75 |
590 | 1037 | 9.942850 | TTTGTTTCTTTTCTTTTTGAGGATCTT | 57.057 | 25.926 | 0.00 | 0.00 | 34.92 | 2.40 |
591 | 1038 | 9.942850 | TTGTTTCTTTTCTTTTTGAGGATCTTT | 57.057 | 25.926 | 0.00 | 0.00 | 34.92 | 2.52 |
592 | 1039 | 9.586435 | TGTTTCTTTTCTTTTTGAGGATCTTTC | 57.414 | 29.630 | 0.00 | 0.00 | 34.92 | 2.62 |
593 | 1040 | 9.809096 | GTTTCTTTTCTTTTTGAGGATCTTTCT | 57.191 | 29.630 | 0.00 | 0.00 | 34.92 | 2.52 |
599 | 1046 | 7.761038 | TCTTTTTGAGGATCTTTCTTTACCC | 57.239 | 36.000 | 0.00 | 0.00 | 34.92 | 3.69 |
600 | 1047 | 7.526918 | TCTTTTTGAGGATCTTTCTTTACCCT | 58.473 | 34.615 | 0.00 | 0.00 | 34.92 | 4.34 |
601 | 1048 | 8.004801 | TCTTTTTGAGGATCTTTCTTTACCCTT | 58.995 | 33.333 | 0.00 | 0.00 | 34.92 | 3.95 |
602 | 1049 | 8.547481 | TTTTTGAGGATCTTTCTTTACCCTTT | 57.453 | 30.769 | 0.00 | 0.00 | 34.92 | 3.11 |
603 | 1050 | 8.547481 | TTTTGAGGATCTTTCTTTACCCTTTT | 57.453 | 30.769 | 0.00 | 0.00 | 34.92 | 2.27 |
604 | 1051 | 8.547481 | TTTGAGGATCTTTCTTTACCCTTTTT | 57.453 | 30.769 | 0.00 | 0.00 | 34.92 | 1.94 |
631 | 1078 | 4.094830 | TCTGTAGTGGTGTGTCAGTAGA | 57.905 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
648 | 1095 | 2.693797 | AGACAGCTGCATTTCAAACG | 57.306 | 45.000 | 15.27 | 0.00 | 0.00 | 3.60 |
675 | 1122 | 5.635417 | AAAGATGAGGAAAAACTAGCTGC | 57.365 | 39.130 | 0.00 | 0.00 | 0.00 | 5.25 |
681 | 1128 | 1.663161 | GGAAAAACTAGCTGCGTGTGC | 60.663 | 52.381 | 0.00 | 0.00 | 43.20 | 4.57 |
682 | 1129 | 1.264288 | GAAAAACTAGCTGCGTGTGCT | 59.736 | 47.619 | 0.00 | 4.59 | 43.34 | 4.40 |
683 | 1130 | 0.868406 | AAAACTAGCTGCGTGTGCTC | 59.132 | 50.000 | 0.00 | 0.00 | 43.34 | 4.26 |
766 | 1217 | 2.656007 | GCAACGACACGACACGGA | 60.656 | 61.111 | 0.00 | 0.00 | 0.00 | 4.69 |
817 | 1284 | 1.500512 | GCGTCGGTTACTTGTGCCAA | 61.501 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
818 | 1285 | 0.233848 | CGTCGGTTACTTGTGCCAAC | 59.766 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
890 | 1358 | 4.704833 | CACTCGCACCCCCACCAG | 62.705 | 72.222 | 0.00 | 0.00 | 0.00 | 4.00 |
902 | 1370 | 2.507854 | CCACCAGTCCACCACGTCT | 61.508 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
905 | 1373 | 0.759436 | ACCAGTCCACCACGTCTCTT | 60.759 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
926 | 1394 | 2.435059 | GAGCCGTCAACTCTGCCC | 60.435 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
927 | 1395 | 3.240134 | GAGCCGTCAACTCTGCCCA | 62.240 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
959 | 1427 | 1.410932 | CGTTCCTGATCTCTCTCCCCT | 60.411 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
983 | 1451 | 4.479993 | CCCCGCTTGCTCCTCCTG | 62.480 | 72.222 | 0.00 | 0.00 | 0.00 | 3.86 |
998 | 1467 | 4.218578 | CTGCTCCTGCCGATCGCT | 62.219 | 66.667 | 10.32 | 0.00 | 38.78 | 4.93 |
1015 | 1484 | 1.111715 | GCTCATGGATTCCAAGCCCC | 61.112 | 60.000 | 15.71 | 0.00 | 36.95 | 5.80 |
1180 | 1649 | 1.303317 | CCTACCACTGCCAACCACC | 60.303 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
1255 | 1724 | 5.067273 | TGGATTCGACATGGTTAGTGTTTT | 58.933 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
1257 | 1726 | 5.411669 | GGATTCGACATGGTTAGTGTTTTCT | 59.588 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1258 | 1727 | 6.072673 | GGATTCGACATGGTTAGTGTTTTCTT | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
1260 | 1729 | 6.295039 | TCGACATGGTTAGTGTTTTCTTTC | 57.705 | 37.500 | 0.00 | 0.00 | 0.00 | 2.62 |
1261 | 1730 | 5.050634 | TCGACATGGTTAGTGTTTTCTTTCG | 60.051 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1262 | 1731 | 4.855531 | ACATGGTTAGTGTTTTCTTTCGC | 58.144 | 39.130 | 0.00 | 0.00 | 0.00 | 4.70 |
1264 | 1733 | 2.288458 | TGGTTAGTGTTTTCTTTCGCGG | 59.712 | 45.455 | 6.13 | 0.00 | 0.00 | 6.46 |
1265 | 1734 | 2.350102 | GGTTAGTGTTTTCTTTCGCGGG | 60.350 | 50.000 | 6.13 | 0.00 | 0.00 | 6.13 |
1266 | 1735 | 1.515081 | TAGTGTTTTCTTTCGCGGGG | 58.485 | 50.000 | 6.13 | 0.00 | 0.00 | 5.73 |
1267 | 1736 | 1.170290 | AGTGTTTTCTTTCGCGGGGG | 61.170 | 55.000 | 6.13 | 0.00 | 0.00 | 5.40 |
1283 | 1752 | 0.894835 | GGGGGCATGGTTAGTGTTTG | 59.105 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
1292 | 1761 | 1.937899 | GGTTAGTGTTTGTGCTGACGT | 59.062 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
1295 | 1764 | 2.825086 | AGTGTTTGTGCTGACGTTTC | 57.175 | 45.000 | 0.00 | 0.00 | 0.00 | 2.78 |
1307 | 1781 | 3.611766 | GCTGACGTTTCTTTTGGGGAATC | 60.612 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
1444 | 1919 | 0.107654 | GTCTCCCGATTCCCCAACAG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1446 | 1921 | 0.839946 | CTCCCGATTCCCCAACAGAT | 59.160 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1447 | 1922 | 1.212935 | CTCCCGATTCCCCAACAGATT | 59.787 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
1449 | 1924 | 2.438021 | TCCCGATTCCCCAACAGATTAG | 59.562 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
1450 | 1925 | 2.487265 | CCCGATTCCCCAACAGATTAGG | 60.487 | 54.545 | 0.00 | 0.00 | 0.00 | 2.69 |
1451 | 1926 | 2.172717 | CCGATTCCCCAACAGATTAGGT | 59.827 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1452 | 1927 | 3.206150 | CGATTCCCCAACAGATTAGGTG | 58.794 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1453 | 1928 | 3.118408 | CGATTCCCCAACAGATTAGGTGA | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
1454 | 1929 | 4.444876 | CGATTCCCCAACAGATTAGGTGAT | 60.445 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
1455 | 1930 | 3.931907 | TCCCCAACAGATTAGGTGATG | 57.068 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
1456 | 1931 | 3.459828 | TCCCCAACAGATTAGGTGATGA | 58.540 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
1457 | 1932 | 3.849574 | TCCCCAACAGATTAGGTGATGAA | 59.150 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
1458 | 1933 | 3.947834 | CCCCAACAGATTAGGTGATGAAC | 59.052 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
1484 | 1959 | 0.179100 | CCGCACGAGATGATGAACCT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1489 | 1964 | 0.103026 | CGAGATGATGAACCTCGGCA | 59.897 | 55.000 | 0.00 | 0.00 | 44.11 | 5.69 |
1490 | 1965 | 1.576356 | GAGATGATGAACCTCGGCAC | 58.424 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1496 | 1971 | 2.671963 | GAACCTCGGCACCCAACC | 60.672 | 66.667 | 0.00 | 0.00 | 0.00 | 3.77 |
1537 | 2012 | 6.765036 | AGTTCAGTAATTCTCCATACATGCTG | 59.235 | 38.462 | 0.00 | 0.00 | 0.00 | 4.41 |
1538 | 2013 | 6.484364 | TCAGTAATTCTCCATACATGCTGA | 57.516 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
1539 | 2014 | 6.283694 | TCAGTAATTCTCCATACATGCTGAC | 58.716 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1540 | 2015 | 5.468072 | CAGTAATTCTCCATACATGCTGACC | 59.532 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1541 | 2016 | 4.508551 | AATTCTCCATACATGCTGACCA | 57.491 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
1542 | 2017 | 3.548745 | TTCTCCATACATGCTGACCAG | 57.451 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
1543 | 2018 | 2.470990 | TCTCCATACATGCTGACCAGT | 58.529 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
1585 | 2060 | 2.423538 | GTGGACTTGTGCAGTGAAAACT | 59.576 | 45.455 | 0.00 | 0.00 | 35.01 | 2.66 |
1654 | 2129 | 0.566176 | AGGTCATATCGGAAGGGGGA | 59.434 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
1681 | 2156 | 4.579869 | ACAAGATATTCCAGCAGACGTTT | 58.420 | 39.130 | 0.00 | 0.00 | 0.00 | 3.60 |
1696 | 2171 | 0.040958 | CGTTTGAGTGCTTGCCTGAC | 60.041 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1762 | 2237 | 1.342174 | GGTCCGATAATGGGCGTCTTA | 59.658 | 52.381 | 0.00 | 0.00 | 33.15 | 2.10 |
2010 | 2499 | 9.396022 | CTTTATTATACTCCCATTCTGTGTTGT | 57.604 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
2099 | 2588 | 8.439971 | TCCCATACTAATAGCATTGAACAAGAT | 58.560 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2411 | 2905 | 1.899437 | ATCACTTCCCCGTCGCATGT | 61.899 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2681 | 3184 | 2.223112 | GCATGCTTCAACACACTATCGG | 60.223 | 50.000 | 11.37 | 0.00 | 0.00 | 4.18 |
2694 | 3197 | 7.392494 | ACACACTATCGGTATATGTCTATGG | 57.608 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2763 | 3274 | 5.693769 | ATCTACCGAGAGAAAAATCCCAA | 57.306 | 39.130 | 0.00 | 0.00 | 34.35 | 4.12 |
2804 | 3315 | 4.631813 | GTGGTTTAGCATCACTCGAATCTT | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
2812 | 3323 | 4.870426 | GCATCACTCGAATCTTAAGTCCAA | 59.130 | 41.667 | 1.63 | 0.00 | 0.00 | 3.53 |
2862 | 3391 | 5.357257 | GTTAGGTGTCAAGTTCTTCAGTGA | 58.643 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2863 | 3392 | 3.798202 | AGGTGTCAAGTTCTTCAGTGAC | 58.202 | 45.455 | 0.00 | 0.00 | 40.64 | 3.67 |
2864 | 3393 | 2.872858 | GGTGTCAAGTTCTTCAGTGACC | 59.127 | 50.000 | 0.00 | 0.00 | 39.72 | 4.02 |
2944 | 3503 | 2.578786 | TCTACCACGAGTTCAGTGACA | 58.421 | 47.619 | 0.00 | 0.00 | 41.83 | 3.58 |
2985 | 3544 | 9.877178 | TTCATGAAGAAGAAGTCTATAAAGGTC | 57.123 | 33.333 | 3.38 | 0.00 | 34.56 | 3.85 |
3001 | 3560 | 0.902531 | GGTCCGGAGATCACCTCAAA | 59.097 | 55.000 | 3.06 | 0.00 | 43.76 | 2.69 |
3036 | 3595 | 5.167121 | AGTGATCGACAGATTGTTCTTCAG | 58.833 | 41.667 | 0.00 | 0.00 | 37.19 | 3.02 |
3040 | 3599 | 4.560128 | TCGACAGATTGTTCTTCAGGAAG | 58.440 | 43.478 | 2.60 | 2.60 | 39.71 | 3.46 |
3041 | 3600 | 4.280929 | TCGACAGATTGTTCTTCAGGAAGA | 59.719 | 41.667 | 7.62 | 7.62 | 44.94 | 2.87 |
3043 | 3602 | 8.269444 | ATCGACAGATTGTTCTTCAGGAAGAAG | 61.269 | 40.741 | 21.35 | 12.72 | 44.37 | 2.85 |
3059 | 3618 | 8.191446 | TCAGGAAGAAGTCTATAAAGATTCACG | 58.809 | 37.037 | 0.00 | 0.00 | 33.30 | 4.35 |
3134 | 3693 | 3.070590 | ACTCTTTTAGCACCTTACACGGT | 59.929 | 43.478 | 0.00 | 0.00 | 37.93 | 4.83 |
3149 | 3708 | 0.471211 | ACGGTGGAGGAAGTGAGGAA | 60.471 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3156 | 3715 | 2.419851 | GGAGGAAGTGAGGAATGCTCTG | 60.420 | 54.545 | 2.94 | 0.00 | 32.75 | 3.35 |
3175 | 3734 | 5.181245 | GCTCTGTTTAGCATTGGTGACTTAA | 59.819 | 40.000 | 0.00 | 0.00 | 42.30 | 1.85 |
3184 | 3743 | 0.250989 | TGGTGACTTAAAAGGCCCCG | 60.251 | 55.000 | 0.00 | 0.00 | 31.13 | 5.73 |
3186 | 3745 | 0.963856 | GTGACTTAAAAGGCCCCGGG | 60.964 | 60.000 | 15.80 | 15.80 | 31.13 | 5.73 |
3279 | 3838 | 2.935676 | GCTCCAGGTAGTAAACAGTGGC | 60.936 | 54.545 | 0.00 | 0.00 | 34.91 | 5.01 |
3280 | 3839 | 2.301870 | CTCCAGGTAGTAAACAGTGGCA | 59.698 | 50.000 | 0.00 | 0.00 | 34.91 | 4.92 |
3281 | 3840 | 2.301870 | TCCAGGTAGTAAACAGTGGCAG | 59.698 | 50.000 | 0.00 | 0.00 | 34.91 | 4.85 |
3282 | 3841 | 2.301870 | CCAGGTAGTAAACAGTGGCAGA | 59.698 | 50.000 | 0.00 | 0.00 | 29.60 | 4.26 |
3283 | 3842 | 3.244422 | CCAGGTAGTAAACAGTGGCAGAA | 60.244 | 47.826 | 0.00 | 0.00 | 29.60 | 3.02 |
3284 | 3843 | 4.385825 | CAGGTAGTAAACAGTGGCAGAAA | 58.614 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
3285 | 3844 | 5.003804 | CAGGTAGTAAACAGTGGCAGAAAT | 58.996 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
3286 | 3845 | 5.122396 | CAGGTAGTAAACAGTGGCAGAAATC | 59.878 | 44.000 | 0.00 | 0.00 | 0.00 | 2.17 |
3287 | 3846 | 5.001232 | GGTAGTAAACAGTGGCAGAAATCA | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3288 | 3847 | 5.106673 | GGTAGTAAACAGTGGCAGAAATCAC | 60.107 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3289 | 3848 | 4.460263 | AGTAAACAGTGGCAGAAATCACA | 58.540 | 39.130 | 0.00 | 0.00 | 36.43 | 3.58 |
3290 | 3849 | 5.072741 | AGTAAACAGTGGCAGAAATCACAT | 58.927 | 37.500 | 0.00 | 0.00 | 36.43 | 3.21 |
3291 | 3850 | 6.237901 | AGTAAACAGTGGCAGAAATCACATA | 58.762 | 36.000 | 0.00 | 0.00 | 36.43 | 2.29 |
3292 | 3851 | 6.886459 | AGTAAACAGTGGCAGAAATCACATAT | 59.114 | 34.615 | 0.00 | 0.00 | 36.43 | 1.78 |
3293 | 3852 | 6.594788 | AAACAGTGGCAGAAATCACATATT | 57.405 | 33.333 | 0.00 | 0.00 | 36.43 | 1.28 |
3294 | 3853 | 6.594788 | AACAGTGGCAGAAATCACATATTT | 57.405 | 33.333 | 0.00 | 0.00 | 36.43 | 1.40 |
3295 | 3854 | 5.957798 | ACAGTGGCAGAAATCACATATTTG | 58.042 | 37.500 | 0.00 | 0.00 | 36.43 | 2.32 |
3296 | 3855 | 5.711506 | ACAGTGGCAGAAATCACATATTTGA | 59.288 | 36.000 | 0.00 | 0.00 | 36.43 | 2.69 |
3297 | 3856 | 6.032094 | CAGTGGCAGAAATCACATATTTGAC | 58.968 | 40.000 | 0.00 | 0.00 | 36.43 | 3.18 |
3298 | 3857 | 5.126061 | AGTGGCAGAAATCACATATTTGACC | 59.874 | 40.000 | 0.00 | 0.00 | 36.43 | 4.02 |
3299 | 3858 | 5.126061 | GTGGCAGAAATCACATATTTGACCT | 59.874 | 40.000 | 0.00 | 0.00 | 34.32 | 3.85 |
3300 | 3859 | 5.125900 | TGGCAGAAATCACATATTTGACCTG | 59.874 | 40.000 | 10.82 | 10.82 | 0.00 | 4.00 |
3301 | 3860 | 5.357878 | GGCAGAAATCACATATTTGACCTGA | 59.642 | 40.000 | 15.94 | 0.00 | 0.00 | 3.86 |
3302 | 3861 | 6.459298 | GGCAGAAATCACATATTTGACCTGAG | 60.459 | 42.308 | 15.94 | 1.99 | 0.00 | 3.35 |
3303 | 3862 | 6.459298 | GCAGAAATCACATATTTGACCTGAGG | 60.459 | 42.308 | 15.94 | 0.00 | 0.00 | 3.86 |
3304 | 3863 | 6.825213 | CAGAAATCACATATTTGACCTGAGGA | 59.175 | 38.462 | 4.99 | 0.00 | 0.00 | 3.71 |
3305 | 3864 | 6.825721 | AGAAATCACATATTTGACCTGAGGAC | 59.174 | 38.462 | 4.99 | 0.00 | 0.00 | 3.85 |
3306 | 3865 | 4.123497 | TCACATATTTGACCTGAGGACG | 57.877 | 45.455 | 4.99 | 0.00 | 0.00 | 4.79 |
3307 | 3866 | 3.767131 | TCACATATTTGACCTGAGGACGA | 59.233 | 43.478 | 4.99 | 0.00 | 0.00 | 4.20 |
3308 | 3867 | 4.221924 | TCACATATTTGACCTGAGGACGAA | 59.778 | 41.667 | 4.99 | 5.66 | 0.00 | 3.85 |
3309 | 3868 | 4.935205 | CACATATTTGACCTGAGGACGAAA | 59.065 | 41.667 | 4.99 | 3.37 | 0.00 | 3.46 |
3310 | 3869 | 5.586243 | CACATATTTGACCTGAGGACGAAAT | 59.414 | 40.000 | 4.99 | 10.39 | 0.00 | 2.17 |
3311 | 3870 | 5.817816 | ACATATTTGACCTGAGGACGAAATC | 59.182 | 40.000 | 4.99 | 0.00 | 0.00 | 2.17 |
3312 | 3871 | 3.762407 | TTTGACCTGAGGACGAAATCA | 57.238 | 42.857 | 4.99 | 0.00 | 0.00 | 2.57 |
3313 | 3872 | 3.762407 | TTGACCTGAGGACGAAATCAA | 57.238 | 42.857 | 4.99 | 0.00 | 0.00 | 2.57 |
3314 | 3873 | 3.762407 | TGACCTGAGGACGAAATCAAA | 57.238 | 42.857 | 4.99 | 0.00 | 0.00 | 2.69 |
3315 | 3874 | 4.286297 | TGACCTGAGGACGAAATCAAAT | 57.714 | 40.909 | 4.99 | 0.00 | 0.00 | 2.32 |
3316 | 3875 | 4.253685 | TGACCTGAGGACGAAATCAAATC | 58.746 | 43.478 | 4.99 | 0.00 | 0.00 | 2.17 |
3317 | 3876 | 4.253685 | GACCTGAGGACGAAATCAAATCA | 58.746 | 43.478 | 4.99 | 0.00 | 0.00 | 2.57 |
3318 | 3877 | 4.848357 | ACCTGAGGACGAAATCAAATCAT | 58.152 | 39.130 | 4.99 | 0.00 | 0.00 | 2.45 |
3319 | 3878 | 5.989477 | ACCTGAGGACGAAATCAAATCATA | 58.011 | 37.500 | 4.99 | 0.00 | 0.00 | 2.15 |
3320 | 3879 | 6.414732 | ACCTGAGGACGAAATCAAATCATAA | 58.585 | 36.000 | 4.99 | 0.00 | 0.00 | 1.90 |
3321 | 3880 | 6.316390 | ACCTGAGGACGAAATCAAATCATAAC | 59.684 | 38.462 | 4.99 | 0.00 | 0.00 | 1.89 |
3322 | 3881 | 6.238484 | CCTGAGGACGAAATCAAATCATAACC | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 2.85 |
3323 | 3882 | 6.414732 | TGAGGACGAAATCAAATCATAACCT | 58.585 | 36.000 | 0.00 | 0.00 | 0.00 | 3.50 |
3324 | 3883 | 6.316140 | TGAGGACGAAATCAAATCATAACCTG | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
3325 | 3884 | 6.414732 | AGGACGAAATCAAATCATAACCTGA | 58.585 | 36.000 | 0.00 | 0.00 | 38.53 | 3.86 |
3326 | 3885 | 6.316390 | AGGACGAAATCAAATCATAACCTGAC | 59.684 | 38.462 | 0.00 | 0.00 | 36.48 | 3.51 |
3327 | 3886 | 6.436843 | ACGAAATCAAATCATAACCTGACC | 57.563 | 37.500 | 0.00 | 0.00 | 36.48 | 4.02 |
3328 | 3887 | 6.180472 | ACGAAATCAAATCATAACCTGACCT | 58.820 | 36.000 | 0.00 | 0.00 | 36.48 | 3.85 |
3329 | 3888 | 6.094048 | ACGAAATCAAATCATAACCTGACCTG | 59.906 | 38.462 | 0.00 | 0.00 | 36.48 | 4.00 |
3330 | 3889 | 6.458751 | CGAAATCAAATCATAACCTGACCTGG | 60.459 | 42.308 | 0.00 | 0.00 | 36.48 | 4.45 |
3331 | 3890 | 4.927267 | TCAAATCATAACCTGACCTGGT | 57.073 | 40.909 | 0.00 | 0.00 | 43.11 | 4.00 |
3340 | 3899 | 3.564053 | ACCTGACCTGGTTACGAAAAA | 57.436 | 42.857 | 0.00 | 0.00 | 36.89 | 1.94 |
3358 | 3917 | 4.590850 | AAAAATTTCACTCTGCTGACCC | 57.409 | 40.909 | 0.00 | 0.00 | 0.00 | 4.46 |
3359 | 3918 | 3.515602 | AAATTTCACTCTGCTGACCCT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 4.34 |
3360 | 3919 | 3.515602 | AATTTCACTCTGCTGACCCTT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 3.95 |
3361 | 3920 | 3.515602 | ATTTCACTCTGCTGACCCTTT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 3.11 |
3362 | 3921 | 2.260844 | TTCACTCTGCTGACCCTTTG | 57.739 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
3363 | 3922 | 0.397941 | TCACTCTGCTGACCCTTTGG | 59.602 | 55.000 | 0.00 | 0.00 | 37.80 | 3.28 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 2.668280 | GCGAAACGGTGCTCCTCAC | 61.668 | 63.158 | 2.85 | 0.00 | 44.90 | 3.51 |
3 | 4 | 2.357034 | GCGAAACGGTGCTCCTCA | 60.357 | 61.111 | 2.85 | 0.00 | 0.00 | 3.86 |
4 | 5 | 2.357034 | TGCGAAACGGTGCTCCTC | 60.357 | 61.111 | 2.85 | 0.00 | 0.00 | 3.71 |
5 | 6 | 2.665185 | GTGCGAAACGGTGCTCCT | 60.665 | 61.111 | 2.85 | 0.00 | 0.00 | 3.69 |
14 | 15 | 3.423154 | CCTGGGAGCGTGCGAAAC | 61.423 | 66.667 | 0.00 | 0.00 | 0.00 | 2.78 |
15 | 16 | 2.951475 | AAACCTGGGAGCGTGCGAAA | 62.951 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
18 | 19 | 3.423154 | GAAACCTGGGAGCGTGCG | 61.423 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
19 | 20 | 2.032681 | AGAAACCTGGGAGCGTGC | 59.967 | 61.111 | 0.00 | 0.00 | 0.00 | 5.34 |
20 | 21 | 1.672356 | CCAGAAACCTGGGAGCGTG | 60.672 | 63.158 | 0.00 | 0.00 | 45.86 | 5.34 |
21 | 22 | 2.750350 | CCAGAAACCTGGGAGCGT | 59.250 | 61.111 | 0.00 | 0.00 | 45.86 | 5.07 |
28 | 29 | 0.595095 | GAGCTGCAACCAGAAACCTG | 59.405 | 55.000 | 1.02 | 0.00 | 41.77 | 4.00 |
29 | 30 | 0.538287 | GGAGCTGCAACCAGAAACCT | 60.538 | 55.000 | 0.00 | 0.00 | 41.77 | 3.50 |
30 | 31 | 1.856265 | CGGAGCTGCAACCAGAAACC | 61.856 | 60.000 | 5.91 | 0.00 | 41.77 | 3.27 |
32 | 33 | 0.884704 | GACGGAGCTGCAACCAGAAA | 60.885 | 55.000 | 5.91 | 0.00 | 41.77 | 2.52 |
34 | 35 | 2.343758 | GACGGAGCTGCAACCAGA | 59.656 | 61.111 | 5.91 | 0.00 | 41.77 | 3.86 |
35 | 36 | 2.743928 | GGACGGAGCTGCAACCAG | 60.744 | 66.667 | 5.91 | 9.95 | 42.13 | 4.00 |
36 | 37 | 4.680237 | CGGACGGAGCTGCAACCA | 62.680 | 66.667 | 15.51 | 0.00 | 0.00 | 3.67 |
39 | 40 | 4.314440 | AAGCGGACGGAGCTGCAA | 62.314 | 61.111 | 5.91 | 0.00 | 45.31 | 4.08 |
40 | 41 | 4.742201 | GAAGCGGACGGAGCTGCA | 62.742 | 66.667 | 5.91 | 0.00 | 45.31 | 4.41 |
54 | 55 | 0.110192 | GTTTTGCTCCGCTTCCGAAG | 60.110 | 55.000 | 3.56 | 3.56 | 36.29 | 3.79 |
55 | 56 | 1.512156 | GGTTTTGCTCCGCTTCCGAA | 61.512 | 55.000 | 0.00 | 0.00 | 36.29 | 4.30 |
56 | 57 | 1.964373 | GGTTTTGCTCCGCTTCCGA | 60.964 | 57.895 | 0.00 | 0.00 | 36.29 | 4.55 |
57 | 58 | 1.791103 | TTGGTTTTGCTCCGCTTCCG | 61.791 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
58 | 59 | 0.387565 | TTTGGTTTTGCTCCGCTTCC | 59.612 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
59 | 60 | 1.487482 | GTTTGGTTTTGCTCCGCTTC | 58.513 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
60 | 61 | 0.248866 | CGTTTGGTTTTGCTCCGCTT | 60.249 | 50.000 | 0.00 | 0.00 | 0.00 | 4.68 |
61 | 62 | 1.358759 | CGTTTGGTTTTGCTCCGCT | 59.641 | 52.632 | 0.00 | 0.00 | 0.00 | 5.52 |
62 | 63 | 1.660264 | CCGTTTGGTTTTGCTCCGC | 60.660 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
63 | 64 | 1.007849 | CCCGTTTGGTTTTGCTCCG | 60.008 | 57.895 | 0.00 | 0.00 | 0.00 | 4.63 |
64 | 65 | 1.300620 | GCCCGTTTGGTTTTGCTCC | 60.301 | 57.895 | 0.00 | 0.00 | 36.04 | 4.70 |
65 | 66 | 1.300620 | GGCCCGTTTGGTTTTGCTC | 60.301 | 57.895 | 0.00 | 0.00 | 36.04 | 4.26 |
66 | 67 | 2.802724 | GGGCCCGTTTGGTTTTGCT | 61.803 | 57.895 | 5.69 | 0.00 | 36.04 | 3.91 |
67 | 68 | 1.465200 | TAGGGCCCGTTTGGTTTTGC | 61.465 | 55.000 | 18.44 | 0.00 | 36.04 | 3.68 |
68 | 69 | 1.000394 | CTTAGGGCCCGTTTGGTTTTG | 60.000 | 52.381 | 18.44 | 0.00 | 36.04 | 2.44 |
69 | 70 | 1.334160 | CTTAGGGCCCGTTTGGTTTT | 58.666 | 50.000 | 18.44 | 0.00 | 36.04 | 2.43 |
70 | 71 | 0.186630 | ACTTAGGGCCCGTTTGGTTT | 59.813 | 50.000 | 18.44 | 0.00 | 36.04 | 3.27 |
71 | 72 | 0.186630 | AACTTAGGGCCCGTTTGGTT | 59.813 | 50.000 | 18.44 | 15.09 | 36.04 | 3.67 |
72 | 73 | 0.186630 | AAACTTAGGGCCCGTTTGGT | 59.813 | 50.000 | 21.38 | 12.78 | 36.04 | 3.67 |
73 | 74 | 0.601057 | CAAACTTAGGGCCCGTTTGG | 59.399 | 55.000 | 31.18 | 19.53 | 42.12 | 3.28 |
74 | 75 | 0.038618 | GCAAACTTAGGGCCCGTTTG | 60.039 | 55.000 | 32.99 | 32.99 | 46.15 | 2.93 |
75 | 76 | 0.178973 | AGCAAACTTAGGGCCCGTTT | 60.179 | 50.000 | 18.44 | 18.00 | 0.00 | 3.60 |
76 | 77 | 0.608308 | GAGCAAACTTAGGGCCCGTT | 60.608 | 55.000 | 18.44 | 12.33 | 0.00 | 4.44 |
77 | 78 | 1.002502 | GAGCAAACTTAGGGCCCGT | 60.003 | 57.895 | 18.44 | 5.35 | 0.00 | 5.28 |
78 | 79 | 2.106683 | CGAGCAAACTTAGGGCCCG | 61.107 | 63.158 | 18.44 | 4.53 | 0.00 | 6.13 |
79 | 80 | 0.608308 | AACGAGCAAACTTAGGGCCC | 60.608 | 55.000 | 16.46 | 16.46 | 0.00 | 5.80 |
80 | 81 | 1.244816 | AAACGAGCAAACTTAGGGCC | 58.755 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
81 | 82 | 2.809696 | TGTAAACGAGCAAACTTAGGGC | 59.190 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
82 | 83 | 4.083484 | CCTTGTAAACGAGCAAACTTAGGG | 60.083 | 45.833 | 0.00 | 0.00 | 0.00 | 3.53 |
83 | 84 | 4.514066 | ACCTTGTAAACGAGCAAACTTAGG | 59.486 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
84 | 85 | 5.668558 | ACCTTGTAAACGAGCAAACTTAG | 57.331 | 39.130 | 0.00 | 0.00 | 0.00 | 2.18 |
85 | 86 | 6.514947 | TCTACCTTGTAAACGAGCAAACTTA | 58.485 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
86 | 87 | 5.362263 | TCTACCTTGTAAACGAGCAAACTT | 58.638 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
87 | 88 | 4.952460 | TCTACCTTGTAAACGAGCAAACT | 58.048 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
88 | 89 | 5.235831 | AGTTCTACCTTGTAAACGAGCAAAC | 59.764 | 40.000 | 0.00 | 0.00 | 0.00 | 2.93 |
89 | 90 | 5.362263 | AGTTCTACCTTGTAAACGAGCAAA | 58.638 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
90 | 91 | 4.952460 | AGTTCTACCTTGTAAACGAGCAA | 58.048 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
91 | 92 | 4.595762 | AGTTCTACCTTGTAAACGAGCA | 57.404 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
92 | 93 | 6.253083 | GTCATAGTTCTACCTTGTAAACGAGC | 59.747 | 42.308 | 0.00 | 0.00 | 0.00 | 5.03 |
93 | 94 | 7.536855 | AGTCATAGTTCTACCTTGTAAACGAG | 58.463 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
94 | 95 | 7.458409 | AGTCATAGTTCTACCTTGTAAACGA | 57.542 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
95 | 96 | 7.063074 | CCAAGTCATAGTTCTACCTTGTAAACG | 59.937 | 40.741 | 0.00 | 0.00 | 0.00 | 3.60 |
96 | 97 | 7.876582 | ACCAAGTCATAGTTCTACCTTGTAAAC | 59.123 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
97 | 98 | 7.970102 | ACCAAGTCATAGTTCTACCTTGTAAA | 58.030 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
98 | 99 | 7.549147 | ACCAAGTCATAGTTCTACCTTGTAA | 57.451 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
99 | 100 | 7.549147 | AACCAAGTCATAGTTCTACCTTGTA | 57.451 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
100 | 101 | 6.435292 | AACCAAGTCATAGTTCTACCTTGT | 57.565 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
101 | 102 | 5.577164 | CGAACCAAGTCATAGTTCTACCTTG | 59.423 | 44.000 | 0.00 | 0.00 | 38.17 | 3.61 |
102 | 103 | 5.337330 | CCGAACCAAGTCATAGTTCTACCTT | 60.337 | 44.000 | 0.00 | 0.00 | 38.17 | 3.50 |
103 | 104 | 4.159879 | CCGAACCAAGTCATAGTTCTACCT | 59.840 | 45.833 | 0.00 | 0.00 | 38.17 | 3.08 |
104 | 105 | 4.081807 | ACCGAACCAAGTCATAGTTCTACC | 60.082 | 45.833 | 0.00 | 0.00 | 38.17 | 3.18 |
105 | 106 | 5.069501 | ACCGAACCAAGTCATAGTTCTAC | 57.930 | 43.478 | 0.00 | 0.00 | 38.17 | 2.59 |
106 | 107 | 4.159135 | GGACCGAACCAAGTCATAGTTCTA | 59.841 | 45.833 | 0.00 | 0.00 | 38.17 | 2.10 |
107 | 108 | 3.056035 | GGACCGAACCAAGTCATAGTTCT | 60.056 | 47.826 | 0.00 | 0.00 | 38.17 | 3.01 |
108 | 109 | 3.259902 | GGACCGAACCAAGTCATAGTTC | 58.740 | 50.000 | 0.00 | 0.00 | 37.20 | 3.01 |
109 | 110 | 2.635915 | TGGACCGAACCAAGTCATAGTT | 59.364 | 45.455 | 0.00 | 0.00 | 36.96 | 2.24 |
110 | 111 | 2.233922 | CTGGACCGAACCAAGTCATAGT | 59.766 | 50.000 | 2.56 | 0.00 | 39.59 | 2.12 |
111 | 112 | 2.418746 | CCTGGACCGAACCAAGTCATAG | 60.419 | 54.545 | 0.00 | 0.00 | 39.59 | 2.23 |
112 | 113 | 1.553248 | CCTGGACCGAACCAAGTCATA | 59.447 | 52.381 | 0.00 | 0.00 | 39.59 | 2.15 |
113 | 114 | 0.324943 | CCTGGACCGAACCAAGTCAT | 59.675 | 55.000 | 0.00 | 0.00 | 39.59 | 3.06 |
114 | 115 | 1.752198 | CCTGGACCGAACCAAGTCA | 59.248 | 57.895 | 0.00 | 0.00 | 39.59 | 3.41 |
115 | 116 | 1.003718 | CCCTGGACCGAACCAAGTC | 60.004 | 63.158 | 0.00 | 0.00 | 39.59 | 3.01 |
116 | 117 | 3.157680 | CCCTGGACCGAACCAAGT | 58.842 | 61.111 | 0.00 | 0.00 | 39.59 | 3.16 |
117 | 118 | 2.359975 | GCCCTGGACCGAACCAAG | 60.360 | 66.667 | 0.00 | 0.00 | 39.59 | 3.61 |
118 | 119 | 3.961414 | GGCCCTGGACCGAACCAA | 61.961 | 66.667 | 0.00 | 0.00 | 39.59 | 3.67 |
119 | 120 | 4.974438 | AGGCCCTGGACCGAACCA | 62.974 | 66.667 | 0.00 | 0.00 | 38.33 | 3.67 |
120 | 121 | 3.205851 | AAAGGCCCTGGACCGAACC | 62.206 | 63.158 | 0.00 | 0.00 | 0.00 | 3.62 |
121 | 122 | 1.971695 | CAAAGGCCCTGGACCGAAC | 60.972 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
122 | 123 | 2.434331 | CAAAGGCCCTGGACCGAA | 59.566 | 61.111 | 0.00 | 0.00 | 0.00 | 4.30 |
123 | 124 | 3.646715 | CCAAAGGCCCTGGACCGA | 61.647 | 66.667 | 15.21 | 0.00 | 35.85 | 4.69 |
124 | 125 | 3.920093 | GACCAAAGGCCCTGGACCG | 62.920 | 68.421 | 24.93 | 2.27 | 37.40 | 4.79 |
125 | 126 | 2.035783 | GACCAAAGGCCCTGGACC | 59.964 | 66.667 | 24.93 | 13.53 | 37.40 | 4.46 |
126 | 127 | 2.359975 | CGACCAAAGGCCCTGGAC | 60.360 | 66.667 | 24.93 | 18.34 | 37.40 | 4.02 |
127 | 128 | 4.344865 | GCGACCAAAGGCCCTGGA | 62.345 | 66.667 | 24.93 | 0.00 | 37.40 | 3.86 |
128 | 129 | 2.966732 | TAGCGACCAAAGGCCCTGG | 61.967 | 63.158 | 18.08 | 18.08 | 40.05 | 4.45 |
129 | 130 | 1.745489 | GTAGCGACCAAAGGCCCTG | 60.745 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
130 | 131 | 2.185310 | CTGTAGCGACCAAAGGCCCT | 62.185 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
131 | 132 | 1.745489 | CTGTAGCGACCAAAGGCCC | 60.745 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
132 | 133 | 1.019805 | GTCTGTAGCGACCAAAGGCC | 61.020 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
133 | 134 | 2.457080 | GTCTGTAGCGACCAAAGGC | 58.543 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
140 | 141 | 1.226435 | CAGCGAGGTCTGTAGCGAC | 60.226 | 63.158 | 0.00 | 0.00 | 34.34 | 5.19 |
141 | 142 | 3.052620 | GCAGCGAGGTCTGTAGCGA | 62.053 | 63.158 | 0.00 | 0.00 | 36.49 | 4.93 |
142 | 143 | 2.580867 | GCAGCGAGGTCTGTAGCG | 60.581 | 66.667 | 0.00 | 0.00 | 36.49 | 4.26 |
143 | 144 | 2.343163 | ATCGCAGCGAGGTCTGTAGC | 62.343 | 60.000 | 24.08 | 0.00 | 39.91 | 3.58 |
144 | 145 | 0.101399 | AATCGCAGCGAGGTCTGTAG | 59.899 | 55.000 | 24.08 | 0.00 | 39.91 | 2.74 |
145 | 146 | 0.179137 | CAATCGCAGCGAGGTCTGTA | 60.179 | 55.000 | 24.08 | 0.00 | 39.91 | 2.74 |
146 | 147 | 1.446792 | CAATCGCAGCGAGGTCTGT | 60.447 | 57.895 | 24.08 | 1.46 | 39.91 | 3.41 |
147 | 148 | 0.529337 | ATCAATCGCAGCGAGGTCTG | 60.529 | 55.000 | 24.08 | 16.44 | 39.91 | 3.51 |
148 | 149 | 0.176680 | AATCAATCGCAGCGAGGTCT | 59.823 | 50.000 | 24.08 | 2.75 | 39.91 | 3.85 |
149 | 150 | 0.302890 | CAATCAATCGCAGCGAGGTC | 59.697 | 55.000 | 24.08 | 0.00 | 39.91 | 3.85 |
150 | 151 | 0.391661 | ACAATCAATCGCAGCGAGGT | 60.392 | 50.000 | 24.08 | 10.88 | 39.91 | 3.85 |
151 | 152 | 1.570813 | TACAATCAATCGCAGCGAGG | 58.429 | 50.000 | 24.08 | 17.43 | 39.91 | 4.63 |
152 | 153 | 2.796593 | TCATACAATCAATCGCAGCGAG | 59.203 | 45.455 | 24.08 | 10.78 | 39.91 | 5.03 |
153 | 154 | 2.820330 | TCATACAATCAATCGCAGCGA | 58.180 | 42.857 | 22.06 | 22.06 | 41.13 | 4.93 |
154 | 155 | 3.590720 | TTCATACAATCAATCGCAGCG | 57.409 | 42.857 | 9.06 | 9.06 | 0.00 | 5.18 |
155 | 156 | 5.745294 | ACAAATTCATACAATCAATCGCAGC | 59.255 | 36.000 | 0.00 | 0.00 | 0.00 | 5.25 |
156 | 157 | 6.139638 | CGACAAATTCATACAATCAATCGCAG | 59.860 | 38.462 | 0.00 | 0.00 | 0.00 | 5.18 |
157 | 158 | 5.964751 | CGACAAATTCATACAATCAATCGCA | 59.035 | 36.000 | 0.00 | 0.00 | 0.00 | 5.10 |
158 | 159 | 6.191661 | TCGACAAATTCATACAATCAATCGC | 58.808 | 36.000 | 0.00 | 0.00 | 0.00 | 4.58 |
159 | 160 | 7.904977 | ACTTCGACAAATTCATACAATCAATCG | 59.095 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
160 | 161 | 9.003112 | CACTTCGACAAATTCATACAATCAATC | 57.997 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
161 | 162 | 8.729756 | TCACTTCGACAAATTCATACAATCAAT | 58.270 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
162 | 163 | 8.093659 | TCACTTCGACAAATTCATACAATCAA | 57.906 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
163 | 164 | 7.387673 | ACTCACTTCGACAAATTCATACAATCA | 59.612 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
164 | 165 | 7.743104 | ACTCACTTCGACAAATTCATACAATC | 58.257 | 34.615 | 0.00 | 0.00 | 0.00 | 2.67 |
165 | 166 | 7.672983 | ACTCACTTCGACAAATTCATACAAT | 57.327 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
166 | 167 | 8.596271 | TTACTCACTTCGACAAATTCATACAA | 57.404 | 30.769 | 0.00 | 0.00 | 0.00 | 2.41 |
167 | 168 | 8.771920 | ATTACTCACTTCGACAAATTCATACA | 57.228 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
169 | 170 | 9.863845 | TGTATTACTCACTTCGACAAATTCATA | 57.136 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
170 | 171 | 8.771920 | TGTATTACTCACTTCGACAAATTCAT | 57.228 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
171 | 172 | 8.596271 | TTGTATTACTCACTTCGACAAATTCA | 57.404 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
177 | 178 | 9.863845 | TGAAATATTGTATTACTCACTTCGACA | 57.136 | 29.630 | 0.00 | 0.00 | 0.00 | 4.35 |
179 | 180 | 9.309516 | GGTGAAATATTGTATTACTCACTTCGA | 57.690 | 33.333 | 11.84 | 0.00 | 33.77 | 3.71 |
180 | 181 | 8.548721 | GGGTGAAATATTGTATTACTCACTTCG | 58.451 | 37.037 | 11.84 | 0.00 | 33.77 | 3.79 |
181 | 182 | 8.548721 | CGGGTGAAATATTGTATTACTCACTTC | 58.451 | 37.037 | 11.84 | 6.27 | 33.77 | 3.01 |
182 | 183 | 8.262227 | TCGGGTGAAATATTGTATTACTCACTT | 58.738 | 33.333 | 11.84 | 0.00 | 33.77 | 3.16 |
183 | 184 | 7.788026 | TCGGGTGAAATATTGTATTACTCACT | 58.212 | 34.615 | 11.84 | 0.00 | 33.77 | 3.41 |
184 | 185 | 8.428186 | TTCGGGTGAAATATTGTATTACTCAC | 57.572 | 34.615 | 5.87 | 5.87 | 0.00 | 3.51 |
185 | 186 | 9.451002 | TTTTCGGGTGAAATATTGTATTACTCA | 57.549 | 29.630 | 0.00 | 0.00 | 43.32 | 3.41 |
210 | 211 | 3.922375 | TCCCTCCACACAATTCCTTTTT | 58.078 | 40.909 | 0.00 | 0.00 | 0.00 | 1.94 |
211 | 212 | 3.611025 | TCCCTCCACACAATTCCTTTT | 57.389 | 42.857 | 0.00 | 0.00 | 0.00 | 2.27 |
212 | 213 | 3.075882 | TCATCCCTCCACACAATTCCTTT | 59.924 | 43.478 | 0.00 | 0.00 | 0.00 | 3.11 |
213 | 214 | 2.649312 | TCATCCCTCCACACAATTCCTT | 59.351 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
214 | 215 | 2.278245 | TCATCCCTCCACACAATTCCT | 58.722 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
215 | 216 | 2.806945 | TCATCCCTCCACACAATTCC | 57.193 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
216 | 217 | 2.874701 | CGATCATCCCTCCACACAATTC | 59.125 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
217 | 218 | 2.239654 | ACGATCATCCCTCCACACAATT | 59.760 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
218 | 219 | 1.839994 | ACGATCATCCCTCCACACAAT | 59.160 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
219 | 220 | 1.275666 | ACGATCATCCCTCCACACAA | 58.724 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
220 | 221 | 1.275666 | AACGATCATCCCTCCACACA | 58.724 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
221 | 222 | 3.753294 | ATAACGATCATCCCTCCACAC | 57.247 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
222 | 223 | 4.444306 | GGAAATAACGATCATCCCTCCACA | 60.444 | 45.833 | 0.00 | 0.00 | 0.00 | 4.17 |
223 | 224 | 4.065789 | GGAAATAACGATCATCCCTCCAC | 58.934 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
237 | 238 | 2.492088 | GCCAACACAGGGAGGAAATAAC | 59.508 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
272 | 273 | 6.374417 | ACAGTACTACTCCCAAACATCATT | 57.626 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
275 | 276 | 5.421374 | AGGTACAGTACTACTCCCAAACATC | 59.579 | 44.000 | 10.62 | 0.00 | 0.00 | 3.06 |
277 | 278 | 4.744237 | AGGTACAGTACTACTCCCAAACA | 58.256 | 43.478 | 10.62 | 0.00 | 0.00 | 2.83 |
278 | 279 | 5.735285 | AAGGTACAGTACTACTCCCAAAC | 57.265 | 43.478 | 10.62 | 0.00 | 0.00 | 2.93 |
279 | 280 | 5.840149 | TCAAAGGTACAGTACTACTCCCAAA | 59.160 | 40.000 | 10.62 | 0.00 | 0.00 | 3.28 |
280 | 281 | 5.396485 | TCAAAGGTACAGTACTACTCCCAA | 58.604 | 41.667 | 10.62 | 0.00 | 0.00 | 4.12 |
282 | 283 | 5.624052 | GCTTCAAAGGTACAGTACTACTCCC | 60.624 | 48.000 | 10.62 | 0.00 | 0.00 | 4.30 |
283 | 284 | 5.047519 | TGCTTCAAAGGTACAGTACTACTCC | 60.048 | 44.000 | 10.62 | 0.00 | 0.00 | 3.85 |
284 | 285 | 6.022163 | TGCTTCAAAGGTACAGTACTACTC | 57.978 | 41.667 | 10.62 | 0.00 | 0.00 | 2.59 |
285 | 286 | 6.607004 | ATGCTTCAAAGGTACAGTACTACT | 57.393 | 37.500 | 10.62 | 0.00 | 0.00 | 2.57 |
286 | 287 | 8.654215 | GTTAATGCTTCAAAGGTACAGTACTAC | 58.346 | 37.037 | 10.62 | 0.00 | 0.00 | 2.73 |
287 | 288 | 8.591072 | AGTTAATGCTTCAAAGGTACAGTACTA | 58.409 | 33.333 | 10.62 | 0.00 | 0.00 | 1.82 |
290 | 291 | 8.685838 | AAAGTTAATGCTTCAAAGGTACAGTA | 57.314 | 30.769 | 0.00 | 0.00 | 0.00 | 2.74 |
339 | 372 | 5.681179 | GCAAGGAAACCAGCAGAAAGTTAAA | 60.681 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
502 | 909 | 1.280457 | GGCTCTCCCTCTTTCTTGGA | 58.720 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
567 | 1014 | 9.809096 | AGAAAGATCCTCAAAAAGAAAAGAAAC | 57.191 | 29.630 | 0.00 | 0.00 | 0.00 | 2.78 |
573 | 1020 | 8.638873 | GGGTAAAGAAAGATCCTCAAAAAGAAA | 58.361 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
574 | 1021 | 8.004801 | AGGGTAAAGAAAGATCCTCAAAAAGAA | 58.995 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
575 | 1022 | 7.526918 | AGGGTAAAGAAAGATCCTCAAAAAGA | 58.473 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
576 | 1023 | 7.767250 | AGGGTAAAGAAAGATCCTCAAAAAG | 57.233 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
577 | 1024 | 8.547481 | AAAGGGTAAAGAAAGATCCTCAAAAA | 57.453 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
578 | 1025 | 8.547481 | AAAAGGGTAAAGAAAGATCCTCAAAA | 57.453 | 30.769 | 0.00 | 0.00 | 0.00 | 2.44 |
579 | 1026 | 8.547481 | AAAAAGGGTAAAGAAAGATCCTCAAA | 57.453 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
602 | 1049 | 5.473846 | TGACACACCACTACAGAAACAAAAA | 59.526 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
603 | 1050 | 5.004448 | TGACACACCACTACAGAAACAAAA | 58.996 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
604 | 1051 | 4.580868 | TGACACACCACTACAGAAACAAA | 58.419 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
605 | 1052 | 4.188462 | CTGACACACCACTACAGAAACAA | 58.812 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
606 | 1053 | 3.196901 | ACTGACACACCACTACAGAAACA | 59.803 | 43.478 | 0.00 | 0.00 | 33.53 | 2.83 |
607 | 1054 | 3.793559 | ACTGACACACCACTACAGAAAC | 58.206 | 45.455 | 0.00 | 0.00 | 33.53 | 2.78 |
631 | 1078 | 0.314935 | CCCGTTTGAAATGCAGCTGT | 59.685 | 50.000 | 16.64 | 0.00 | 0.00 | 4.40 |
648 | 1095 | 4.607293 | AGTTTTTCCTCATCTTTTGCCC | 57.393 | 40.909 | 0.00 | 0.00 | 0.00 | 5.36 |
675 | 1122 | 2.610694 | CCAACCTGCAGAGCACACG | 61.611 | 63.158 | 17.39 | 0.00 | 33.79 | 4.49 |
681 | 1128 | 2.360852 | CAGCCCCAACCTGCAGAG | 60.361 | 66.667 | 17.39 | 8.04 | 0.00 | 3.35 |
682 | 1129 | 2.296945 | AAACAGCCCCAACCTGCAGA | 62.297 | 55.000 | 17.39 | 0.00 | 33.65 | 4.26 |
683 | 1130 | 1.833934 | AAACAGCCCCAACCTGCAG | 60.834 | 57.895 | 6.78 | 6.78 | 33.65 | 4.41 |
716 | 1166 | 0.105408 | AAACTAGTGCCGTTGTCCGT | 59.895 | 50.000 | 0.00 | 0.00 | 33.66 | 4.69 |
747 | 1198 | 3.020105 | CGTGTCGTGTCGTTGCGA | 61.020 | 61.111 | 0.00 | 0.00 | 34.54 | 5.10 |
755 | 1206 | 2.278989 | CAACCGTCCGTGTCGTGT | 60.279 | 61.111 | 0.00 | 0.00 | 0.00 | 4.49 |
817 | 1284 | 4.057428 | GTGGAGCGAGCGTCCAGT | 62.057 | 66.667 | 13.73 | 0.00 | 45.00 | 4.00 |
818 | 1285 | 4.803426 | GGTGGAGCGAGCGTCCAG | 62.803 | 72.222 | 13.73 | 0.00 | 45.00 | 3.86 |
878 | 1346 | 4.660938 | GTGGACTGGTGGGGGTGC | 62.661 | 72.222 | 0.00 | 0.00 | 0.00 | 5.01 |
880 | 1348 | 4.525028 | TGGTGGACTGGTGGGGGT | 62.525 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
882 | 1350 | 4.329545 | CGTGGTGGACTGGTGGGG | 62.330 | 72.222 | 0.00 | 0.00 | 0.00 | 4.96 |
883 | 1351 | 3.530910 | GACGTGGTGGACTGGTGGG | 62.531 | 68.421 | 0.00 | 0.00 | 0.00 | 4.61 |
884 | 1352 | 2.030562 | GACGTGGTGGACTGGTGG | 59.969 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
885 | 1353 | 1.006102 | GAGACGTGGTGGACTGGTG | 60.006 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
886 | 1354 | 0.759436 | AAGAGACGTGGTGGACTGGT | 60.759 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
887 | 1355 | 0.393077 | AAAGAGACGTGGTGGACTGG | 59.607 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
888 | 1356 | 1.784525 | GAAAGAGACGTGGTGGACTG | 58.215 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
889 | 1357 | 0.314302 | CGAAAGAGACGTGGTGGACT | 59.686 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
890 | 1358 | 0.666577 | CCGAAAGAGACGTGGTGGAC | 60.667 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
891 | 1359 | 0.824595 | TCCGAAAGAGACGTGGTGGA | 60.825 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
902 | 1370 | 0.038526 | GAGTTGACGGCTCCGAAAGA | 60.039 | 55.000 | 15.95 | 0.00 | 42.83 | 2.52 |
905 | 1373 | 1.289066 | CAGAGTTGACGGCTCCGAA | 59.711 | 57.895 | 15.95 | 0.00 | 42.83 | 4.30 |
926 | 1394 | 1.216710 | GGAACGAGGGAGAGCAGTG | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 3.66 |
927 | 1395 | 1.077625 | AGGAACGAGGGAGAGCAGT | 59.922 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
998 | 1467 | 0.709397 | TTGGGGCTTGGAATCCATGA | 59.291 | 50.000 | 18.05 | 0.00 | 31.53 | 3.07 |
1180 | 1649 | 0.178975 | AGGAGGCGAGGAGATAGGTG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1264 | 1733 | 0.894835 | CAAACACTAACCATGCCCCC | 59.105 | 55.000 | 0.00 | 0.00 | 0.00 | 5.40 |
1265 | 1734 | 1.272212 | CACAAACACTAACCATGCCCC | 59.728 | 52.381 | 0.00 | 0.00 | 0.00 | 5.80 |
1266 | 1735 | 1.336795 | GCACAAACACTAACCATGCCC | 60.337 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
1267 | 1736 | 1.613437 | AGCACAAACACTAACCATGCC | 59.387 | 47.619 | 0.00 | 0.00 | 31.94 | 4.40 |
1268 | 1737 | 2.293122 | TCAGCACAAACACTAACCATGC | 59.707 | 45.455 | 0.00 | 0.00 | 0.00 | 4.06 |
1269 | 1738 | 3.606846 | CGTCAGCACAAACACTAACCATG | 60.607 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
1270 | 1739 | 2.548057 | CGTCAGCACAAACACTAACCAT | 59.452 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
1283 | 1752 | 1.269051 | CCCCAAAAGAAACGTCAGCAC | 60.269 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
1292 | 1761 | 3.831911 | AGCAATCGATTCCCCAAAAGAAA | 59.168 | 39.130 | 7.92 | 0.00 | 0.00 | 2.52 |
1295 | 1764 | 2.736400 | GCAGCAATCGATTCCCCAAAAG | 60.736 | 50.000 | 7.92 | 0.00 | 0.00 | 2.27 |
1450 | 1925 | 2.475111 | CGTGCGGTATATGGTTCATCAC | 59.525 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1451 | 1926 | 2.362717 | TCGTGCGGTATATGGTTCATCA | 59.637 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
1452 | 1927 | 2.987149 | CTCGTGCGGTATATGGTTCATC | 59.013 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
1453 | 1928 | 2.626266 | TCTCGTGCGGTATATGGTTCAT | 59.374 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
1454 | 1929 | 2.025898 | TCTCGTGCGGTATATGGTTCA | 58.974 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
1455 | 1930 | 2.787601 | TCTCGTGCGGTATATGGTTC | 57.212 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1456 | 1931 | 2.626266 | TCATCTCGTGCGGTATATGGTT | 59.374 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
1457 | 1932 | 2.235891 | TCATCTCGTGCGGTATATGGT | 58.764 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
1458 | 1933 | 3.119495 | TCATCATCTCGTGCGGTATATGG | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
1486 | 1961 | 0.035820 | TGTCTAATCGGTTGGGTGCC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1489 | 1964 | 4.019681 | TGAAAGATGTCTAATCGGTTGGGT | 60.020 | 41.667 | 0.00 | 0.00 | 0.00 | 4.51 |
1490 | 1965 | 4.513442 | TGAAAGATGTCTAATCGGTTGGG | 58.487 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
1496 | 1971 | 8.689251 | TTACTGAACTGAAAGATGTCTAATCG | 57.311 | 34.615 | 0.00 | 0.00 | 37.43 | 3.34 |
1537 | 2012 | 0.693049 | AGGTTCATGGGTCACTGGTC | 59.307 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1538 | 2013 | 0.401738 | CAGGTTCATGGGTCACTGGT | 59.598 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1539 | 2014 | 0.401738 | ACAGGTTCATGGGTCACTGG | 59.598 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1540 | 2015 | 1.202806 | ACACAGGTTCATGGGTCACTG | 60.203 | 52.381 | 0.00 | 0.00 | 27.87 | 3.66 |
1541 | 2016 | 1.140312 | ACACAGGTTCATGGGTCACT | 58.860 | 50.000 | 0.00 | 0.00 | 27.87 | 3.41 |
1542 | 2017 | 1.238439 | CACACAGGTTCATGGGTCAC | 58.762 | 55.000 | 0.00 | 0.00 | 33.49 | 3.67 |
1543 | 2018 | 0.110295 | CCACACAGGTTCATGGGTCA | 59.890 | 55.000 | 0.00 | 0.00 | 33.49 | 4.02 |
1585 | 2060 | 0.396435 | CATCCGTAATGCTAGGCCCA | 59.604 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1654 | 2129 | 5.533482 | GTCTGCTGGAATATCTTGTCGTAT | 58.467 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
1681 | 2156 | 1.005748 | CTCGTCAGGCAAGCACTCA | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
1696 | 2171 | 0.389166 | ACGCCTTCTTGAGCTTCTCG | 60.389 | 55.000 | 0.00 | 0.00 | 32.35 | 4.04 |
1762 | 2237 | 1.515954 | CTTGGCGGTGGAGACGTAT | 59.484 | 57.895 | 0.00 | 0.00 | 0.00 | 3.06 |
1898 | 2379 | 8.441312 | AAAATGTTCGTTTCTAGACCAAACTA | 57.559 | 30.769 | 0.00 | 0.00 | 32.46 | 2.24 |
1899 | 2380 | 6.937436 | AAATGTTCGTTTCTAGACCAAACT | 57.063 | 33.333 | 0.00 | 0.00 | 32.46 | 2.66 |
1902 | 2384 | 6.928979 | TGAAAATGTTCGTTTCTAGACCAA | 57.071 | 33.333 | 0.00 | 0.00 | 36.46 | 3.67 |
2072 | 2561 | 7.715249 | TCTTGTTCAATGCTATTAGTATGGGAC | 59.285 | 37.037 | 1.55 | 1.55 | 0.00 | 4.46 |
2411 | 2905 | 0.843309 | ATGGGCCATCACAACGGATA | 59.157 | 50.000 | 14.78 | 0.00 | 0.00 | 2.59 |
2681 | 3184 | 4.330074 | GCCGCATTCACCATAGACATATAC | 59.670 | 45.833 | 0.00 | 0.00 | 0.00 | 1.47 |
2694 | 3197 | 0.109179 | TTGAAGCATGCCGCATTCAC | 60.109 | 50.000 | 15.66 | 0.00 | 46.13 | 3.18 |
2726 | 3229 | 8.091385 | TCTCGGTAGATTTTAAACTCAAAACC | 57.909 | 34.615 | 8.13 | 10.14 | 30.57 | 3.27 |
2727 | 3230 | 8.985805 | TCTCTCGGTAGATTTTAAACTCAAAAC | 58.014 | 33.333 | 8.13 | 3.63 | 30.57 | 2.43 |
2804 | 3315 | 1.801395 | GCAGCTCGCGTATTGGACTTA | 60.801 | 52.381 | 5.77 | 0.00 | 0.00 | 2.24 |
2862 | 3391 | 1.133513 | TGAAGCACAATCACCCTTGGT | 60.134 | 47.619 | 0.00 | 0.00 | 35.62 | 3.67 |
2863 | 3392 | 1.270550 | GTGAAGCACAATCACCCTTGG | 59.729 | 52.381 | 0.00 | 0.00 | 41.02 | 3.61 |
2864 | 3393 | 1.069022 | CGTGAAGCACAATCACCCTTG | 60.069 | 52.381 | 0.00 | 0.00 | 43.34 | 3.61 |
2944 | 3503 | 5.766670 | TCTTCATGAAGCACAATCACTCTTT | 59.233 | 36.000 | 27.45 | 0.00 | 38.28 | 2.52 |
2985 | 3544 | 4.881019 | AGATATTTGAGGTGATCTCCGG | 57.119 | 45.455 | 8.14 | 0.00 | 41.76 | 5.14 |
3001 | 3560 | 4.386711 | TGTCGATCACTCGTGGTAGATAT | 58.613 | 43.478 | 0.00 | 0.00 | 45.25 | 1.63 |
3036 | 3595 | 8.928270 | TTCGTGAATCTTTATAGACTTCTTCC | 57.072 | 34.615 | 0.00 | 0.00 | 31.99 | 3.46 |
3040 | 3599 | 9.790389 | TCTTCTTCGTGAATCTTTATAGACTTC | 57.210 | 33.333 | 0.00 | 0.00 | 33.71 | 3.01 |
3041 | 3600 | 9.796120 | CTCTTCTTCGTGAATCTTTATAGACTT | 57.204 | 33.333 | 0.00 | 0.00 | 33.71 | 3.01 |
3043 | 3602 | 9.228636 | GACTCTTCTTCGTGAATCTTTATAGAC | 57.771 | 37.037 | 0.00 | 0.00 | 33.71 | 2.59 |
3044 | 3603 | 9.179909 | AGACTCTTCTTCGTGAATCTTTATAGA | 57.820 | 33.333 | 0.00 | 0.00 | 33.71 | 1.98 |
3045 | 3604 | 9.796120 | AAGACTCTTCTTCGTGAATCTTTATAG | 57.204 | 33.333 | 0.00 | 0.00 | 37.55 | 1.31 |
3048 | 3607 | 9.976511 | TTTAAGACTCTTCTTCGTGAATCTTTA | 57.023 | 29.630 | 0.00 | 3.79 | 41.48 | 1.85 |
3134 | 3693 | 1.556911 | GAGCATTCCTCACTTCCTCCA | 59.443 | 52.381 | 0.00 | 0.00 | 40.45 | 3.86 |
3156 | 3715 | 5.633601 | GCCTTTTAAGTCACCAATGCTAAAC | 59.366 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
3266 | 3825 | 5.616270 | TGTGATTTCTGCCACTGTTTACTA | 58.384 | 37.500 | 0.00 | 0.00 | 34.57 | 1.82 |
3279 | 3838 | 6.825213 | TCCTCAGGTCAAATATGTGATTTCTG | 59.175 | 38.462 | 0.00 | 7.91 | 0.00 | 3.02 |
3280 | 3839 | 6.825721 | GTCCTCAGGTCAAATATGTGATTTCT | 59.174 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
3281 | 3840 | 6.238211 | CGTCCTCAGGTCAAATATGTGATTTC | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 2.17 |
3282 | 3841 | 5.586243 | CGTCCTCAGGTCAAATATGTGATTT | 59.414 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
3283 | 3842 | 5.104941 | TCGTCCTCAGGTCAAATATGTGATT | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3284 | 3843 | 4.405680 | TCGTCCTCAGGTCAAATATGTGAT | 59.594 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
3285 | 3844 | 3.767131 | TCGTCCTCAGGTCAAATATGTGA | 59.233 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
3286 | 3845 | 4.123497 | TCGTCCTCAGGTCAAATATGTG | 57.877 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
3287 | 3846 | 4.819105 | TTCGTCCTCAGGTCAAATATGT | 57.181 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
3288 | 3847 | 5.817296 | TGATTTCGTCCTCAGGTCAAATATG | 59.183 | 40.000 | 0.00 | 0.00 | 0.00 | 1.78 |
3289 | 3848 | 5.989477 | TGATTTCGTCCTCAGGTCAAATAT | 58.011 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
3290 | 3849 | 5.414789 | TGATTTCGTCCTCAGGTCAAATA | 57.585 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
3291 | 3850 | 4.286297 | TGATTTCGTCCTCAGGTCAAAT | 57.714 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
3292 | 3851 | 3.762407 | TGATTTCGTCCTCAGGTCAAA | 57.238 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
3293 | 3852 | 3.762407 | TTGATTTCGTCCTCAGGTCAA | 57.238 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
3294 | 3853 | 3.762407 | TTTGATTTCGTCCTCAGGTCA | 57.238 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
3295 | 3854 | 4.253685 | TGATTTGATTTCGTCCTCAGGTC | 58.746 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
3296 | 3855 | 4.286297 | TGATTTGATTTCGTCCTCAGGT | 57.714 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
3297 | 3856 | 6.238484 | GGTTATGATTTGATTTCGTCCTCAGG | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 3.86 |
3298 | 3857 | 6.540189 | AGGTTATGATTTGATTTCGTCCTCAG | 59.460 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
3299 | 3858 | 6.316140 | CAGGTTATGATTTGATTTCGTCCTCA | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
3300 | 3859 | 6.538742 | TCAGGTTATGATTTGATTTCGTCCTC | 59.461 | 38.462 | 0.00 | 0.00 | 31.12 | 3.71 |
3301 | 3860 | 6.316390 | GTCAGGTTATGATTTGATTTCGTCCT | 59.684 | 38.462 | 0.00 | 0.00 | 40.92 | 3.85 |
3302 | 3861 | 6.458342 | GGTCAGGTTATGATTTGATTTCGTCC | 60.458 | 42.308 | 0.00 | 0.00 | 40.92 | 4.79 |
3303 | 3862 | 6.316390 | AGGTCAGGTTATGATTTGATTTCGTC | 59.684 | 38.462 | 0.00 | 0.00 | 40.92 | 4.20 |
3304 | 3863 | 6.094048 | CAGGTCAGGTTATGATTTGATTTCGT | 59.906 | 38.462 | 0.00 | 0.00 | 40.92 | 3.85 |
3305 | 3864 | 6.458751 | CCAGGTCAGGTTATGATTTGATTTCG | 60.459 | 42.308 | 0.00 | 0.00 | 40.92 | 3.46 |
3306 | 3865 | 6.378280 | ACCAGGTCAGGTTATGATTTGATTTC | 59.622 | 38.462 | 0.00 | 0.00 | 39.34 | 2.17 |
3307 | 3866 | 6.256053 | ACCAGGTCAGGTTATGATTTGATTT | 58.744 | 36.000 | 0.00 | 0.00 | 39.34 | 2.17 |
3308 | 3867 | 5.831103 | ACCAGGTCAGGTTATGATTTGATT | 58.169 | 37.500 | 0.00 | 0.00 | 39.34 | 2.57 |
3309 | 3868 | 5.456921 | ACCAGGTCAGGTTATGATTTGAT | 57.543 | 39.130 | 0.00 | 0.00 | 39.34 | 2.57 |
3310 | 3869 | 4.927267 | ACCAGGTCAGGTTATGATTTGA | 57.073 | 40.909 | 0.00 | 0.00 | 39.34 | 2.69 |
3320 | 3879 | 3.564053 | TTTTTCGTAACCAGGTCAGGT | 57.436 | 42.857 | 0.00 | 0.00 | 45.91 | 4.00 |
3337 | 3896 | 4.218312 | AGGGTCAGCAGAGTGAAATTTTT | 58.782 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
3338 | 3897 | 3.837355 | AGGGTCAGCAGAGTGAAATTTT | 58.163 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
3339 | 3898 | 3.515602 | AGGGTCAGCAGAGTGAAATTT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
3340 | 3899 | 3.515602 | AAGGGTCAGCAGAGTGAAATT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
3341 | 3900 | 3.152341 | CAAAGGGTCAGCAGAGTGAAAT | 58.848 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
3342 | 3901 | 2.575532 | CAAAGGGTCAGCAGAGTGAAA | 58.424 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
3343 | 3902 | 1.202806 | CCAAAGGGTCAGCAGAGTGAA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
3344 | 3903 | 0.397941 | CCAAAGGGTCAGCAGAGTGA | 59.602 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3345 | 3904 | 2.938354 | CCAAAGGGTCAGCAGAGTG | 58.062 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.