Multiple sequence alignment - TraesCS2B01G190400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G190400 chr2B 100.000 3390 0 0 1 3390 166042862 166039473 0.000000e+00 6261.0
1 TraesCS2B01G190400 chr2B 94.574 129 5 2 3262 3390 24762826 24762952 7.420000e-47 198.0
2 TraesCS2B01G190400 chr2B 97.345 113 3 0 3278 3390 166034165 166034277 3.450000e-45 193.0
3 TraesCS2B01G190400 chr2D 91.120 1813 56 30 1528 3279 115579723 115577955 0.000000e+00 2359.0
4 TraesCS2B01G190400 chr2D 86.190 840 54 24 621 1444 115580556 115579763 0.000000e+00 852.0
5 TraesCS2B01G190400 chr2D 96.262 107 4 0 303 409 115581225 115581119 3.480000e-40 176.0
6 TraesCS2B01G190400 chr2D 86.897 145 15 3 218 362 115581338 115581198 3.500000e-35 159.0
7 TraesCS2B01G190400 chr2D 93.243 74 5 0 2936 3009 115578399 115578326 3.580000e-20 110.0
8 TraesCS2B01G190400 chr2D 88.158 76 6 2 373 445 115581377 115581302 1.680000e-13 87.9
9 TraesCS2B01G190400 chr2A 91.333 923 46 15 2089 2985 117155785 117154871 0.000000e+00 1230.0
10 TraesCS2B01G190400 chr2A 89.163 729 42 17 1270 1982 117156520 117155813 0.000000e+00 874.0
11 TraesCS2B01G190400 chr2A 91.304 345 11 5 912 1255 117156833 117156507 1.430000e-123 453.0
12 TraesCS2B01G190400 chr2A 93.333 285 12 2 300 578 117157388 117157105 6.770000e-112 414.0
13 TraesCS2B01G190400 chr2A 89.236 288 16 7 601 874 117157118 117156832 2.500000e-91 346.0
14 TraesCS2B01G190400 chr2A 86.093 302 16 6 2981 3279 117121405 117121127 5.500000e-78 302.0
15 TraesCS2B01G190400 chr3B 91.121 214 17 2 3067 3279 11529207 11528995 4.280000e-74 289.0
16 TraesCS2B01G190400 chr3B 89.498 219 17 4 3065 3279 720999608 720999392 4.310000e-69 272.0
17 TraesCS2B01G190400 chr3B 89.157 83 9 0 2942 3024 110721687 110721769 1.660000e-18 104.0
18 TraesCS2B01G190400 chr5B 90.741 216 18 2 3065 3279 570585860 570586074 1.540000e-73 287.0
19 TraesCS2B01G190400 chr5B 82.917 240 22 10 2715 2936 562485952 562485714 7.420000e-47 198.0
20 TraesCS2B01G190400 chr5B 97.345 113 3 0 3278 3390 98321655 98321543 3.450000e-45 193.0
21 TraesCS2B01G190400 chr5B 92.373 118 9 0 2819 2936 314995243 314995360 5.820000e-38 169.0
22 TraesCS2B01G190400 chr5B 79.012 243 30 11 2719 2941 536200824 536200583 2.730000e-31 147.0
23 TraesCS2B01G190400 chr3A 90.323 217 18 3 3065 3279 510833521 510833736 7.160000e-72 281.0
24 TraesCS2B01G190400 chr5A 88.889 216 21 3 3065 3279 415186370 415186157 2.590000e-66 263.0
25 TraesCS2B01G190400 chr5A 82.759 232 21 11 2723 2936 581472159 581471929 4.470000e-44 189.0
26 TraesCS2B01G190400 chr5A 88.764 89 10 0 2936 3024 660719737 660719825 3.580000e-20 110.0
27 TraesCS2B01G190400 chr5D 83.898 236 19 10 2719 2936 234817441 234817207 1.230000e-49 207.0
28 TraesCS2B01G190400 chr5D 82.627 236 22 11 2719 2936 430973202 430972968 1.240000e-44 191.0
29 TraesCS2B01G190400 chr5D 81.356 236 24 8 2719 2936 33044429 33044196 1.250000e-39 174.0
30 TraesCS2B01G190400 chr7A 82.979 235 22 10 2719 2936 239399615 239399382 2.670000e-46 196.0
31 TraesCS2B01G190400 chr7A 82.553 235 23 10 2719 2936 239268501 239268268 1.240000e-44 191.0
32 TraesCS2B01G190400 chr7A 87.129 101 10 3 2719 2818 250029360 250029458 9.940000e-21 111.0
33 TraesCS2B01G190400 chrUn 97.345 113 3 0 3278 3390 256261758 256261646 3.450000e-45 193.0
34 TraesCS2B01G190400 chr7B 97.345 113 3 0 3278 3390 693702192 693702304 3.450000e-45 193.0
35 TraesCS2B01G190400 chr7B 95.726 117 4 1 3274 3390 33891644 33891529 1.610000e-43 187.0
36 TraesCS2B01G190400 chr7B 90.000 80 8 0 2942 3021 600312840 600312919 1.660000e-18 104.0
37 TraesCS2B01G190400 chr7B 90.000 80 8 0 2942 3021 600365467 600365546 1.660000e-18 104.0
38 TraesCS2B01G190400 chr4B 97.345 113 3 0 3278 3390 648228943 648228831 3.450000e-45 193.0
39 TraesCS2B01G190400 chr4B 97.345 113 3 0 3278 3390 648253384 648253272 3.450000e-45 193.0
40 TraesCS2B01G190400 chr4B 96.460 113 4 0 3278 3390 648203684 648203572 1.610000e-43 187.0
41 TraesCS2B01G190400 chr3D 82.203 236 23 11 2719 2936 410678523 410678757 5.780000e-43 185.0
42 TraesCS2B01G190400 chr3D 83.019 212 17 7 2730 2923 73397806 73398016 1.250000e-39 174.0
43 TraesCS2B01G190400 chr3D 80.672 238 23 15 2719 2936 124620977 124621211 2.710000e-36 163.0
44 TraesCS2B01G190400 chr7D 81.702 235 23 12 2719 2936 201784452 201784683 9.670000e-41 178.0
45 TraesCS2B01G190400 chr4D 81.277 235 26 9 2719 2936 54559095 54558862 1.250000e-39 174.0
46 TraesCS2B01G190400 chr6D 87.209 86 11 0 2936 3021 300823950 300824035 7.740000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G190400 chr2B 166039473 166042862 3389 True 6261.000000 6261 100.000000 1 3390 1 chr2B.!!$R1 3389
1 TraesCS2B01G190400 chr2D 115577955 115581377 3422 True 623.983333 2359 90.311667 218 3279 6 chr2D.!!$R1 3061
2 TraesCS2B01G190400 chr2A 117154871 117157388 2517 True 663.400000 1230 90.873800 300 2985 5 chr2A.!!$R2 2685


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.038618 CAAACGGGCCCTAAGTTTGC 60.039 55.0 29.36 0.83 45.02 3.68 F
163 164 0.101399 CTACAGACCTCGCTGCGATT 59.899 55.0 26.15 15.47 39.51 3.34 F
1489 1964 0.103026 CGAGATGATGAACCTCGGCA 59.897 55.0 0.00 0.00 44.11 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1486 1961 0.035820 TGTCTAATCGGTTGGGTGCC 60.036 55.0 0.00 0.0 0.00 5.01 R
1543 2018 0.110295 CCACACAGGTTCATGGGTCA 59.890 55.0 0.00 0.0 33.49 4.02 R
2694 3197 0.109179 TTGAAGCATGCCGCATTCAC 60.109 50.0 15.66 0.0 46.13 3.18 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.550656 GTGAGGAGCACCGTTTCG 58.449 61.111 0.00 0.00 41.78 3.46
20 21 2.357034 TGAGGAGCACCGTTTCGC 60.357 61.111 0.00 0.00 41.83 4.70
21 22 2.357034 GAGGAGCACCGTTTCGCA 60.357 61.111 0.00 0.00 41.83 5.10
22 23 2.665185 AGGAGCACCGTTTCGCAC 60.665 61.111 0.00 0.00 41.83 5.34
30 31 3.777925 CGTTTCGCACGCTCCCAG 61.778 66.667 0.00 0.00 43.37 4.45
32 33 3.936203 TTTCGCACGCTCCCAGGT 61.936 61.111 0.00 0.00 0.00 4.00
34 35 2.951475 TTTCGCACGCTCCCAGGTTT 62.951 55.000 0.00 0.00 0.00 3.27
35 36 3.423154 CGCACGCTCCCAGGTTTC 61.423 66.667 0.00 0.00 0.00 2.78
36 37 2.032681 GCACGCTCCCAGGTTTCT 59.967 61.111 0.00 0.00 0.00 2.52
37 38 2.328099 GCACGCTCCCAGGTTTCTG 61.328 63.158 0.00 0.00 40.59 3.02
46 47 2.724520 CAGGTTTCTGGTTGCAGCT 58.275 52.632 0.00 0.00 37.36 4.24
47 48 0.595095 CAGGTTTCTGGTTGCAGCTC 59.405 55.000 0.00 0.00 37.36 4.09
48 49 0.538287 AGGTTTCTGGTTGCAGCTCC 60.538 55.000 0.00 0.00 0.00 4.70
49 50 1.576421 GTTTCTGGTTGCAGCTCCG 59.424 57.895 0.00 0.00 0.00 4.63
50 51 1.148273 TTTCTGGTTGCAGCTCCGT 59.852 52.632 0.00 0.00 0.00 4.69
51 52 0.884704 TTTCTGGTTGCAGCTCCGTC 60.885 55.000 0.00 0.00 0.00 4.79
52 53 2.731691 TTCTGGTTGCAGCTCCGTCC 62.732 60.000 0.00 0.00 0.00 4.79
53 54 4.680237 TGGTTGCAGCTCCGTCCG 62.680 66.667 0.00 0.00 0.00 4.79
56 57 4.314440 TTGCAGCTCCGTCCGCTT 62.314 61.111 0.00 0.00 35.07 4.68
57 58 4.742201 TGCAGCTCCGTCCGCTTC 62.742 66.667 0.00 0.00 35.07 3.86
80 81 4.626225 CGGAGCAAAACCAAACGG 57.374 55.556 0.00 0.00 0.00 4.44
81 82 1.007849 CGGAGCAAAACCAAACGGG 60.008 57.895 0.00 0.00 44.81 5.28
82 83 1.300620 GGAGCAAAACCAAACGGGC 60.301 57.895 0.00 0.00 42.05 6.13
83 84 1.300620 GAGCAAAACCAAACGGGCC 60.301 57.895 0.00 0.00 42.05 5.80
84 85 2.280524 GCAAAACCAAACGGGCCC 60.281 61.111 13.57 13.57 42.05 5.80
85 86 2.802724 GCAAAACCAAACGGGCCCT 61.803 57.895 22.43 3.67 42.05 5.19
86 87 1.465200 GCAAAACCAAACGGGCCCTA 61.465 55.000 22.43 0.00 42.05 3.53
87 88 1.041437 CAAAACCAAACGGGCCCTAA 58.959 50.000 22.43 0.00 42.05 2.69
88 89 1.000394 CAAAACCAAACGGGCCCTAAG 60.000 52.381 22.43 6.96 42.05 2.18
89 90 0.186630 AAACCAAACGGGCCCTAAGT 59.813 50.000 22.43 7.76 42.05 2.24
90 91 0.186630 AACCAAACGGGCCCTAAGTT 59.813 50.000 22.43 14.30 42.05 2.66
91 92 0.186630 ACCAAACGGGCCCTAAGTTT 59.813 50.000 22.43 19.64 42.05 2.66
93 94 0.038618 CAAACGGGCCCTAAGTTTGC 60.039 55.000 29.36 0.83 45.02 3.68
94 95 0.178973 AAACGGGCCCTAAGTTTGCT 60.179 50.000 22.43 0.00 36.81 3.91
95 96 0.608308 AACGGGCCCTAAGTTTGCTC 60.608 55.000 22.43 0.00 0.00 4.26
96 97 2.106683 CGGGCCCTAAGTTTGCTCG 61.107 63.158 22.43 0.00 43.15 5.03
97 98 1.002502 GGGCCCTAAGTTTGCTCGT 60.003 57.895 17.04 0.00 0.00 4.18
98 99 0.608308 GGGCCCTAAGTTTGCTCGTT 60.608 55.000 17.04 0.00 0.00 3.85
99 100 1.244816 GGCCCTAAGTTTGCTCGTTT 58.755 50.000 0.00 0.00 0.00 3.60
100 101 2.429478 GGCCCTAAGTTTGCTCGTTTA 58.571 47.619 0.00 0.00 0.00 2.01
101 102 2.161012 GGCCCTAAGTTTGCTCGTTTAC 59.839 50.000 0.00 0.00 0.00 2.01
102 103 2.809696 GCCCTAAGTTTGCTCGTTTACA 59.190 45.455 0.00 0.00 0.00 2.41
103 104 3.251487 GCCCTAAGTTTGCTCGTTTACAA 59.749 43.478 0.00 0.00 0.00 2.41
104 105 4.612939 GCCCTAAGTTTGCTCGTTTACAAG 60.613 45.833 0.00 0.00 0.00 3.16
105 106 4.083484 CCCTAAGTTTGCTCGTTTACAAGG 60.083 45.833 0.00 0.00 0.00 3.61
106 107 4.514066 CCTAAGTTTGCTCGTTTACAAGGT 59.486 41.667 0.00 0.00 0.00 3.50
107 108 5.697633 CCTAAGTTTGCTCGTTTACAAGGTA 59.302 40.000 0.00 0.00 0.00 3.08
108 109 5.668558 AAGTTTGCTCGTTTACAAGGTAG 57.331 39.130 0.00 0.00 0.00 3.18
109 110 4.952460 AGTTTGCTCGTTTACAAGGTAGA 58.048 39.130 0.00 0.00 0.00 2.59
110 111 5.362263 AGTTTGCTCGTTTACAAGGTAGAA 58.638 37.500 0.00 0.00 0.00 2.10
111 112 5.235831 AGTTTGCTCGTTTACAAGGTAGAAC 59.764 40.000 0.00 0.00 0.00 3.01
112 113 4.595762 TGCTCGTTTACAAGGTAGAACT 57.404 40.909 0.00 0.00 0.00 3.01
113 114 5.710513 TGCTCGTTTACAAGGTAGAACTA 57.289 39.130 0.00 0.00 0.00 2.24
114 115 6.276832 TGCTCGTTTACAAGGTAGAACTAT 57.723 37.500 0.00 0.00 0.00 2.12
115 116 6.097356 TGCTCGTTTACAAGGTAGAACTATG 58.903 40.000 0.00 0.00 0.00 2.23
116 117 6.071784 TGCTCGTTTACAAGGTAGAACTATGA 60.072 38.462 0.00 0.00 0.00 2.15
117 118 6.253083 GCTCGTTTACAAGGTAGAACTATGAC 59.747 42.308 0.00 0.00 0.00 3.06
118 119 7.458409 TCGTTTACAAGGTAGAACTATGACT 57.542 36.000 0.00 0.00 0.00 3.41
119 120 7.889469 TCGTTTACAAGGTAGAACTATGACTT 58.111 34.615 0.00 0.00 0.00 3.01
120 121 7.811236 TCGTTTACAAGGTAGAACTATGACTTG 59.189 37.037 15.32 15.32 40.66 3.16
121 122 7.063074 CGTTTACAAGGTAGAACTATGACTTGG 59.937 40.741 18.30 8.55 39.53 3.61
122 123 7.549147 TTACAAGGTAGAACTATGACTTGGT 57.451 36.000 18.30 11.60 39.53 3.67
123 124 6.435292 ACAAGGTAGAACTATGACTTGGTT 57.565 37.500 18.30 0.00 39.53 3.67
124 125 6.465084 ACAAGGTAGAACTATGACTTGGTTC 58.535 40.000 18.30 8.90 39.53 3.62
125 126 5.326200 AGGTAGAACTATGACTTGGTTCG 57.674 43.478 10.59 0.00 42.60 3.95
126 127 4.159879 AGGTAGAACTATGACTTGGTTCGG 59.840 45.833 10.59 0.00 42.60 4.30
127 128 4.081807 GGTAGAACTATGACTTGGTTCGGT 60.082 45.833 10.59 0.28 42.60 4.69
128 129 4.189639 AGAACTATGACTTGGTTCGGTC 57.810 45.455 10.59 0.00 42.60 4.79
129 130 3.056035 AGAACTATGACTTGGTTCGGTCC 60.056 47.826 10.59 0.00 42.60 4.46
130 131 2.253610 ACTATGACTTGGTTCGGTCCA 58.746 47.619 0.00 0.00 35.49 4.02
131 132 2.233922 ACTATGACTTGGTTCGGTCCAG 59.766 50.000 0.00 0.00 38.80 3.86
132 133 0.324943 ATGACTTGGTTCGGTCCAGG 59.675 55.000 7.19 7.19 38.80 4.45
133 134 1.003718 GACTTGGTTCGGTCCAGGG 60.004 63.158 11.82 6.93 38.62 4.45
134 135 2.359975 CTTGGTTCGGTCCAGGGC 60.360 66.667 0.00 0.00 38.80 5.19
135 136 3.920093 CTTGGTTCGGTCCAGGGCC 62.920 68.421 0.00 0.00 38.80 5.80
136 137 4.974438 TGGTTCGGTCCAGGGCCT 62.974 66.667 8.96 0.00 33.19 5.19
137 138 3.647771 GGTTCGGTCCAGGGCCTT 61.648 66.667 8.96 0.00 0.00 4.35
138 139 2.434774 GTTCGGTCCAGGGCCTTT 59.565 61.111 8.96 0.00 0.00 3.11
139 140 1.971695 GTTCGGTCCAGGGCCTTTG 60.972 63.158 8.96 0.00 0.00 2.77
140 141 3.204467 TTCGGTCCAGGGCCTTTGG 62.204 63.158 17.67 17.67 37.04 3.28
141 142 3.966543 CGGTCCAGGGCCTTTGGT 61.967 66.667 21.33 0.00 37.02 3.67
142 143 2.035783 GGTCCAGGGCCTTTGGTC 59.964 66.667 21.33 17.09 37.02 4.02
143 144 2.359975 GTCCAGGGCCTTTGGTCG 60.360 66.667 21.33 0.00 37.02 4.79
144 145 4.344865 TCCAGGGCCTTTGGTCGC 62.345 66.667 21.33 0.00 37.02 5.19
145 146 4.351054 CCAGGGCCTTTGGTCGCT 62.351 66.667 1.32 0.00 0.00 4.93
146 147 2.668632 CAGGGCCTTTGGTCGCTA 59.331 61.111 1.32 0.00 0.00 4.26
147 148 1.745489 CAGGGCCTTTGGTCGCTAC 60.745 63.158 1.32 0.00 0.00 3.58
148 149 2.221299 AGGGCCTTTGGTCGCTACA 61.221 57.895 0.00 0.00 0.00 2.74
149 150 1.745489 GGGCCTTTGGTCGCTACAG 60.745 63.158 0.84 0.00 0.00 2.74
150 151 1.295423 GGCCTTTGGTCGCTACAGA 59.705 57.895 0.00 0.00 0.00 3.41
151 152 1.019805 GGCCTTTGGTCGCTACAGAC 61.020 60.000 0.00 0.00 40.25 3.51
157 158 3.188965 GTCGCTACAGACCTCGCT 58.811 61.111 0.00 0.00 35.22 4.93
158 159 1.226435 GTCGCTACAGACCTCGCTG 60.226 63.158 0.00 0.00 41.63 5.18
159 160 2.580867 CGCTACAGACCTCGCTGC 60.581 66.667 0.00 0.00 39.51 5.25
160 161 2.580867 GCTACAGACCTCGCTGCG 60.581 66.667 17.25 17.25 39.51 5.18
161 162 3.052620 GCTACAGACCTCGCTGCGA 62.053 63.158 24.43 24.43 39.51 5.10
162 163 1.730487 CTACAGACCTCGCTGCGAT 59.270 57.895 26.15 11.99 39.51 4.58
163 164 0.101399 CTACAGACCTCGCTGCGATT 59.899 55.000 26.15 15.47 39.51 3.34
164 165 0.179137 TACAGACCTCGCTGCGATTG 60.179 55.000 26.15 20.74 39.51 2.67
165 166 1.153765 CAGACCTCGCTGCGATTGA 60.154 57.895 26.15 2.70 34.61 2.57
166 167 0.529337 CAGACCTCGCTGCGATTGAT 60.529 55.000 26.15 11.00 34.61 2.57
167 168 0.176680 AGACCTCGCTGCGATTGATT 59.823 50.000 26.15 7.90 34.61 2.57
168 169 0.302890 GACCTCGCTGCGATTGATTG 59.697 55.000 26.15 12.31 34.61 2.67
169 170 0.391661 ACCTCGCTGCGATTGATTGT 60.392 50.000 26.15 12.44 34.61 2.71
170 171 1.134818 ACCTCGCTGCGATTGATTGTA 60.135 47.619 26.15 0.00 34.61 2.41
171 172 2.138320 CCTCGCTGCGATTGATTGTAT 58.862 47.619 26.15 0.00 34.61 2.29
172 173 2.096565 CCTCGCTGCGATTGATTGTATG 60.097 50.000 26.15 9.31 34.61 2.39
173 174 2.796593 CTCGCTGCGATTGATTGTATGA 59.203 45.455 26.15 0.00 34.61 2.15
174 175 3.194062 TCGCTGCGATTGATTGTATGAA 58.806 40.909 22.24 0.00 0.00 2.57
175 176 3.809279 TCGCTGCGATTGATTGTATGAAT 59.191 39.130 22.24 0.00 0.00 2.57
176 177 4.273235 TCGCTGCGATTGATTGTATGAATT 59.727 37.500 22.24 0.00 0.00 2.17
177 178 4.971830 CGCTGCGATTGATTGTATGAATTT 59.028 37.500 18.66 0.00 0.00 1.82
178 179 5.108518 CGCTGCGATTGATTGTATGAATTTG 60.109 40.000 18.66 0.00 0.00 2.32
179 180 5.745294 GCTGCGATTGATTGTATGAATTTGT 59.255 36.000 0.00 0.00 0.00 2.83
180 181 6.075205 GCTGCGATTGATTGTATGAATTTGTC 60.075 38.462 0.00 0.00 0.00 3.18
181 182 5.964751 TGCGATTGATTGTATGAATTTGTCG 59.035 36.000 0.00 0.00 0.00 4.35
182 183 6.183360 TGCGATTGATTGTATGAATTTGTCGA 60.183 34.615 0.00 0.00 0.00 4.20
183 184 6.686679 GCGATTGATTGTATGAATTTGTCGAA 59.313 34.615 0.00 0.00 0.00 3.71
184 185 7.097289 GCGATTGATTGTATGAATTTGTCGAAG 60.097 37.037 0.00 0.00 0.00 3.79
185 186 7.904977 CGATTGATTGTATGAATTTGTCGAAGT 59.095 33.333 0.00 0.00 0.00 3.01
186 187 8.900511 ATTGATTGTATGAATTTGTCGAAGTG 57.099 30.769 0.00 0.00 0.00 3.16
187 188 7.665561 TGATTGTATGAATTTGTCGAAGTGA 57.334 32.000 0.00 0.00 0.00 3.41
188 189 7.742151 TGATTGTATGAATTTGTCGAAGTGAG 58.258 34.615 0.00 0.00 0.00 3.51
189 190 7.387673 TGATTGTATGAATTTGTCGAAGTGAGT 59.612 33.333 0.00 0.00 0.00 3.41
190 191 8.771920 ATTGTATGAATTTGTCGAAGTGAGTA 57.228 30.769 0.00 0.00 0.00 2.59
191 192 8.596271 TTGTATGAATTTGTCGAAGTGAGTAA 57.404 30.769 0.00 0.00 0.00 2.24
192 193 8.771920 TGTATGAATTTGTCGAAGTGAGTAAT 57.228 30.769 0.00 0.00 0.00 1.89
193 194 9.863845 TGTATGAATTTGTCGAAGTGAGTAATA 57.136 29.630 0.00 0.00 0.00 0.98
195 196 8.771920 ATGAATTTGTCGAAGTGAGTAATACA 57.228 30.769 0.00 0.00 0.00 2.29
196 197 8.596271 TGAATTTGTCGAAGTGAGTAATACAA 57.404 30.769 0.00 0.00 0.00 2.41
197 198 9.214957 TGAATTTGTCGAAGTGAGTAATACAAT 57.785 29.630 0.00 0.00 0.00 2.71
203 204 9.863845 TGTCGAAGTGAGTAATACAATATTTCA 57.136 29.630 0.00 0.00 0.00 2.69
205 206 9.309516 TCGAAGTGAGTAATACAATATTTCACC 57.690 33.333 9.50 0.00 35.32 4.02
206 207 8.548721 CGAAGTGAGTAATACAATATTTCACCC 58.451 37.037 9.50 3.72 35.32 4.61
207 208 8.433421 AAGTGAGTAATACAATATTTCACCCG 57.567 34.615 9.50 0.00 35.32 5.28
208 209 7.788026 AGTGAGTAATACAATATTTCACCCGA 58.212 34.615 9.50 0.00 35.32 5.14
209 210 8.262227 AGTGAGTAATACAATATTTCACCCGAA 58.738 33.333 9.50 0.00 35.32 4.30
210 211 8.885722 GTGAGTAATACAATATTTCACCCGAAA 58.114 33.333 3.73 0.00 44.99 3.46
211 212 9.451002 TGAGTAATACAATATTTCACCCGAAAA 57.549 29.630 0.00 0.00 44.12 2.29
237 238 2.627515 ATTGTGTGGAGGGATGATCG 57.372 50.000 0.00 0.00 0.00 3.69
272 273 5.172687 TGTGTTGGCTTGGTCTAATGATA 57.827 39.130 0.00 0.00 0.00 2.15
275 276 6.095300 TGTGTTGGCTTGGTCTAATGATAATG 59.905 38.462 0.00 0.00 0.00 1.90
277 278 7.013655 GTGTTGGCTTGGTCTAATGATAATGAT 59.986 37.037 0.00 0.00 0.00 2.45
278 279 7.013559 TGTTGGCTTGGTCTAATGATAATGATG 59.986 37.037 0.00 0.00 0.00 3.07
279 280 6.604171 TGGCTTGGTCTAATGATAATGATGT 58.396 36.000 0.00 0.00 0.00 3.06
280 281 7.062322 TGGCTTGGTCTAATGATAATGATGTT 58.938 34.615 0.00 0.00 0.00 2.71
282 283 7.864379 GGCTTGGTCTAATGATAATGATGTTTG 59.136 37.037 0.00 0.00 0.00 2.93
283 284 7.864379 GCTTGGTCTAATGATAATGATGTTTGG 59.136 37.037 0.00 0.00 0.00 3.28
284 285 7.822161 TGGTCTAATGATAATGATGTTTGGG 57.178 36.000 0.00 0.00 0.00 4.12
285 286 7.581814 TGGTCTAATGATAATGATGTTTGGGA 58.418 34.615 0.00 0.00 0.00 4.37
286 287 7.720957 TGGTCTAATGATAATGATGTTTGGGAG 59.279 37.037 0.00 0.00 0.00 4.30
287 288 7.721399 GGTCTAATGATAATGATGTTTGGGAGT 59.279 37.037 0.00 0.00 0.00 3.85
290 291 9.784531 CTAATGATAATGATGTTTGGGAGTAGT 57.215 33.333 0.00 0.00 0.00 2.73
316 317 8.007405 ACTGTACCTTTGAAGCATTAACTTTT 57.993 30.769 0.00 0.00 0.00 2.27
362 395 5.514274 TTAACTTTCTGCTGGTTTCCTTG 57.486 39.130 0.00 0.00 0.00 3.61
502 909 0.399454 ACTTGATGTGTGCAGGCTCT 59.601 50.000 0.00 0.00 0.00 4.09
549 996 3.404773 GCTGACCCCTAAGCCAGT 58.595 61.111 0.00 0.00 33.12 4.00
555 1002 0.345502 ACCCCTAAGCCAGTCCCATA 59.654 55.000 0.00 0.00 0.00 2.74
559 1006 1.143073 CCTAAGCCAGTCCCATAACCC 59.857 57.143 0.00 0.00 0.00 4.11
589 1036 9.942850 TTTTGTTTCTTTTCTTTTTGAGGATCT 57.057 25.926 0.00 0.00 34.92 2.75
590 1037 9.942850 TTTGTTTCTTTTCTTTTTGAGGATCTT 57.057 25.926 0.00 0.00 34.92 2.40
591 1038 9.942850 TTGTTTCTTTTCTTTTTGAGGATCTTT 57.057 25.926 0.00 0.00 34.92 2.52
592 1039 9.586435 TGTTTCTTTTCTTTTTGAGGATCTTTC 57.414 29.630 0.00 0.00 34.92 2.62
593 1040 9.809096 GTTTCTTTTCTTTTTGAGGATCTTTCT 57.191 29.630 0.00 0.00 34.92 2.52
599 1046 7.761038 TCTTTTTGAGGATCTTTCTTTACCC 57.239 36.000 0.00 0.00 34.92 3.69
600 1047 7.526918 TCTTTTTGAGGATCTTTCTTTACCCT 58.473 34.615 0.00 0.00 34.92 4.34
601 1048 8.004801 TCTTTTTGAGGATCTTTCTTTACCCTT 58.995 33.333 0.00 0.00 34.92 3.95
602 1049 8.547481 TTTTTGAGGATCTTTCTTTACCCTTT 57.453 30.769 0.00 0.00 34.92 3.11
603 1050 8.547481 TTTTGAGGATCTTTCTTTACCCTTTT 57.453 30.769 0.00 0.00 34.92 2.27
604 1051 8.547481 TTTGAGGATCTTTCTTTACCCTTTTT 57.453 30.769 0.00 0.00 34.92 1.94
631 1078 4.094830 TCTGTAGTGGTGTGTCAGTAGA 57.905 45.455 0.00 0.00 0.00 2.59
648 1095 2.693797 AGACAGCTGCATTTCAAACG 57.306 45.000 15.27 0.00 0.00 3.60
675 1122 5.635417 AAAGATGAGGAAAAACTAGCTGC 57.365 39.130 0.00 0.00 0.00 5.25
681 1128 1.663161 GGAAAAACTAGCTGCGTGTGC 60.663 52.381 0.00 0.00 43.20 4.57
682 1129 1.264288 GAAAAACTAGCTGCGTGTGCT 59.736 47.619 0.00 4.59 43.34 4.40
683 1130 0.868406 AAAACTAGCTGCGTGTGCTC 59.132 50.000 0.00 0.00 43.34 4.26
766 1217 2.656007 GCAACGACACGACACGGA 60.656 61.111 0.00 0.00 0.00 4.69
817 1284 1.500512 GCGTCGGTTACTTGTGCCAA 61.501 55.000 0.00 0.00 0.00 4.52
818 1285 0.233848 CGTCGGTTACTTGTGCCAAC 59.766 55.000 0.00 0.00 0.00 3.77
890 1358 4.704833 CACTCGCACCCCCACCAG 62.705 72.222 0.00 0.00 0.00 4.00
902 1370 2.507854 CCACCAGTCCACCACGTCT 61.508 63.158 0.00 0.00 0.00 4.18
905 1373 0.759436 ACCAGTCCACCACGTCTCTT 60.759 55.000 0.00 0.00 0.00 2.85
926 1394 2.435059 GAGCCGTCAACTCTGCCC 60.435 66.667 0.00 0.00 0.00 5.36
927 1395 3.240134 GAGCCGTCAACTCTGCCCA 62.240 63.158 0.00 0.00 0.00 5.36
959 1427 1.410932 CGTTCCTGATCTCTCTCCCCT 60.411 57.143 0.00 0.00 0.00 4.79
983 1451 4.479993 CCCCGCTTGCTCCTCCTG 62.480 72.222 0.00 0.00 0.00 3.86
998 1467 4.218578 CTGCTCCTGCCGATCGCT 62.219 66.667 10.32 0.00 38.78 4.93
1015 1484 1.111715 GCTCATGGATTCCAAGCCCC 61.112 60.000 15.71 0.00 36.95 5.80
1180 1649 1.303317 CCTACCACTGCCAACCACC 60.303 63.158 0.00 0.00 0.00 4.61
1255 1724 5.067273 TGGATTCGACATGGTTAGTGTTTT 58.933 37.500 0.00 0.00 0.00 2.43
1257 1726 5.411669 GGATTCGACATGGTTAGTGTTTTCT 59.588 40.000 0.00 0.00 0.00 2.52
1258 1727 6.072673 GGATTCGACATGGTTAGTGTTTTCTT 60.073 38.462 0.00 0.00 0.00 2.52
1260 1729 6.295039 TCGACATGGTTAGTGTTTTCTTTC 57.705 37.500 0.00 0.00 0.00 2.62
1261 1730 5.050634 TCGACATGGTTAGTGTTTTCTTTCG 60.051 40.000 0.00 0.00 0.00 3.46
1262 1731 4.855531 ACATGGTTAGTGTTTTCTTTCGC 58.144 39.130 0.00 0.00 0.00 4.70
1264 1733 2.288458 TGGTTAGTGTTTTCTTTCGCGG 59.712 45.455 6.13 0.00 0.00 6.46
1265 1734 2.350102 GGTTAGTGTTTTCTTTCGCGGG 60.350 50.000 6.13 0.00 0.00 6.13
1266 1735 1.515081 TAGTGTTTTCTTTCGCGGGG 58.485 50.000 6.13 0.00 0.00 5.73
1267 1736 1.170290 AGTGTTTTCTTTCGCGGGGG 61.170 55.000 6.13 0.00 0.00 5.40
1283 1752 0.894835 GGGGGCATGGTTAGTGTTTG 59.105 55.000 0.00 0.00 0.00 2.93
1292 1761 1.937899 GGTTAGTGTTTGTGCTGACGT 59.062 47.619 0.00 0.00 0.00 4.34
1295 1764 2.825086 AGTGTTTGTGCTGACGTTTC 57.175 45.000 0.00 0.00 0.00 2.78
1307 1781 3.611766 GCTGACGTTTCTTTTGGGGAATC 60.612 47.826 0.00 0.00 0.00 2.52
1444 1919 0.107654 GTCTCCCGATTCCCCAACAG 60.108 60.000 0.00 0.00 0.00 3.16
1446 1921 0.839946 CTCCCGATTCCCCAACAGAT 59.160 55.000 0.00 0.00 0.00 2.90
1447 1922 1.212935 CTCCCGATTCCCCAACAGATT 59.787 52.381 0.00 0.00 0.00 2.40
1449 1924 2.438021 TCCCGATTCCCCAACAGATTAG 59.562 50.000 0.00 0.00 0.00 1.73
1450 1925 2.487265 CCCGATTCCCCAACAGATTAGG 60.487 54.545 0.00 0.00 0.00 2.69
1451 1926 2.172717 CCGATTCCCCAACAGATTAGGT 59.827 50.000 0.00 0.00 0.00 3.08
1452 1927 3.206150 CGATTCCCCAACAGATTAGGTG 58.794 50.000 0.00 0.00 0.00 4.00
1453 1928 3.118408 CGATTCCCCAACAGATTAGGTGA 60.118 47.826 0.00 0.00 0.00 4.02
1454 1929 4.444876 CGATTCCCCAACAGATTAGGTGAT 60.445 45.833 0.00 0.00 0.00 3.06
1455 1930 3.931907 TCCCCAACAGATTAGGTGATG 57.068 47.619 0.00 0.00 0.00 3.07
1456 1931 3.459828 TCCCCAACAGATTAGGTGATGA 58.540 45.455 0.00 0.00 0.00 2.92
1457 1932 3.849574 TCCCCAACAGATTAGGTGATGAA 59.150 43.478 0.00 0.00 0.00 2.57
1458 1933 3.947834 CCCCAACAGATTAGGTGATGAAC 59.052 47.826 0.00 0.00 0.00 3.18
1484 1959 0.179100 CCGCACGAGATGATGAACCT 60.179 55.000 0.00 0.00 0.00 3.50
1489 1964 0.103026 CGAGATGATGAACCTCGGCA 59.897 55.000 0.00 0.00 44.11 5.69
1490 1965 1.576356 GAGATGATGAACCTCGGCAC 58.424 55.000 0.00 0.00 0.00 5.01
1496 1971 2.671963 GAACCTCGGCACCCAACC 60.672 66.667 0.00 0.00 0.00 3.77
1537 2012 6.765036 AGTTCAGTAATTCTCCATACATGCTG 59.235 38.462 0.00 0.00 0.00 4.41
1538 2013 6.484364 TCAGTAATTCTCCATACATGCTGA 57.516 37.500 0.00 0.00 0.00 4.26
1539 2014 6.283694 TCAGTAATTCTCCATACATGCTGAC 58.716 40.000 0.00 0.00 0.00 3.51
1540 2015 5.468072 CAGTAATTCTCCATACATGCTGACC 59.532 44.000 0.00 0.00 0.00 4.02
1541 2016 4.508551 AATTCTCCATACATGCTGACCA 57.491 40.909 0.00 0.00 0.00 4.02
1542 2017 3.548745 TTCTCCATACATGCTGACCAG 57.451 47.619 0.00 0.00 0.00 4.00
1543 2018 2.470990 TCTCCATACATGCTGACCAGT 58.529 47.619 0.00 0.00 0.00 4.00
1585 2060 2.423538 GTGGACTTGTGCAGTGAAAACT 59.576 45.455 0.00 0.00 35.01 2.66
1654 2129 0.566176 AGGTCATATCGGAAGGGGGA 59.434 55.000 0.00 0.00 0.00 4.81
1681 2156 4.579869 ACAAGATATTCCAGCAGACGTTT 58.420 39.130 0.00 0.00 0.00 3.60
1696 2171 0.040958 CGTTTGAGTGCTTGCCTGAC 60.041 55.000 0.00 0.00 0.00 3.51
1762 2237 1.342174 GGTCCGATAATGGGCGTCTTA 59.658 52.381 0.00 0.00 33.15 2.10
2010 2499 9.396022 CTTTATTATACTCCCATTCTGTGTTGT 57.604 33.333 0.00 0.00 0.00 3.32
2099 2588 8.439971 TCCCATACTAATAGCATTGAACAAGAT 58.560 33.333 0.00 0.00 0.00 2.40
2411 2905 1.899437 ATCACTTCCCCGTCGCATGT 61.899 55.000 0.00 0.00 0.00 3.21
2681 3184 2.223112 GCATGCTTCAACACACTATCGG 60.223 50.000 11.37 0.00 0.00 4.18
2694 3197 7.392494 ACACACTATCGGTATATGTCTATGG 57.608 40.000 0.00 0.00 0.00 2.74
2763 3274 5.693769 ATCTACCGAGAGAAAAATCCCAA 57.306 39.130 0.00 0.00 34.35 4.12
2804 3315 4.631813 GTGGTTTAGCATCACTCGAATCTT 59.368 41.667 0.00 0.00 0.00 2.40
2812 3323 4.870426 GCATCACTCGAATCTTAAGTCCAA 59.130 41.667 1.63 0.00 0.00 3.53
2862 3391 5.357257 GTTAGGTGTCAAGTTCTTCAGTGA 58.643 41.667 0.00 0.00 0.00 3.41
2863 3392 3.798202 AGGTGTCAAGTTCTTCAGTGAC 58.202 45.455 0.00 0.00 40.64 3.67
2864 3393 2.872858 GGTGTCAAGTTCTTCAGTGACC 59.127 50.000 0.00 0.00 39.72 4.02
2944 3503 2.578786 TCTACCACGAGTTCAGTGACA 58.421 47.619 0.00 0.00 41.83 3.58
2985 3544 9.877178 TTCATGAAGAAGAAGTCTATAAAGGTC 57.123 33.333 3.38 0.00 34.56 3.85
3001 3560 0.902531 GGTCCGGAGATCACCTCAAA 59.097 55.000 3.06 0.00 43.76 2.69
3036 3595 5.167121 AGTGATCGACAGATTGTTCTTCAG 58.833 41.667 0.00 0.00 37.19 3.02
3040 3599 4.560128 TCGACAGATTGTTCTTCAGGAAG 58.440 43.478 2.60 2.60 39.71 3.46
3041 3600 4.280929 TCGACAGATTGTTCTTCAGGAAGA 59.719 41.667 7.62 7.62 44.94 2.87
3043 3602 8.269444 ATCGACAGATTGTTCTTCAGGAAGAAG 61.269 40.741 21.35 12.72 44.37 2.85
3059 3618 8.191446 TCAGGAAGAAGTCTATAAAGATTCACG 58.809 37.037 0.00 0.00 33.30 4.35
3134 3693 3.070590 ACTCTTTTAGCACCTTACACGGT 59.929 43.478 0.00 0.00 37.93 4.83
3149 3708 0.471211 ACGGTGGAGGAAGTGAGGAA 60.471 55.000 0.00 0.00 0.00 3.36
3156 3715 2.419851 GGAGGAAGTGAGGAATGCTCTG 60.420 54.545 2.94 0.00 32.75 3.35
3175 3734 5.181245 GCTCTGTTTAGCATTGGTGACTTAA 59.819 40.000 0.00 0.00 42.30 1.85
3184 3743 0.250989 TGGTGACTTAAAAGGCCCCG 60.251 55.000 0.00 0.00 31.13 5.73
3186 3745 0.963856 GTGACTTAAAAGGCCCCGGG 60.964 60.000 15.80 15.80 31.13 5.73
3279 3838 2.935676 GCTCCAGGTAGTAAACAGTGGC 60.936 54.545 0.00 0.00 34.91 5.01
3280 3839 2.301870 CTCCAGGTAGTAAACAGTGGCA 59.698 50.000 0.00 0.00 34.91 4.92
3281 3840 2.301870 TCCAGGTAGTAAACAGTGGCAG 59.698 50.000 0.00 0.00 34.91 4.85
3282 3841 2.301870 CCAGGTAGTAAACAGTGGCAGA 59.698 50.000 0.00 0.00 29.60 4.26
3283 3842 3.244422 CCAGGTAGTAAACAGTGGCAGAA 60.244 47.826 0.00 0.00 29.60 3.02
3284 3843 4.385825 CAGGTAGTAAACAGTGGCAGAAA 58.614 43.478 0.00 0.00 0.00 2.52
3285 3844 5.003804 CAGGTAGTAAACAGTGGCAGAAAT 58.996 41.667 0.00 0.00 0.00 2.17
3286 3845 5.122396 CAGGTAGTAAACAGTGGCAGAAATC 59.878 44.000 0.00 0.00 0.00 2.17
3287 3846 5.001232 GGTAGTAAACAGTGGCAGAAATCA 58.999 41.667 0.00 0.00 0.00 2.57
3288 3847 5.106673 GGTAGTAAACAGTGGCAGAAATCAC 60.107 44.000 0.00 0.00 0.00 3.06
3289 3848 4.460263 AGTAAACAGTGGCAGAAATCACA 58.540 39.130 0.00 0.00 36.43 3.58
3290 3849 5.072741 AGTAAACAGTGGCAGAAATCACAT 58.927 37.500 0.00 0.00 36.43 3.21
3291 3850 6.237901 AGTAAACAGTGGCAGAAATCACATA 58.762 36.000 0.00 0.00 36.43 2.29
3292 3851 6.886459 AGTAAACAGTGGCAGAAATCACATAT 59.114 34.615 0.00 0.00 36.43 1.78
3293 3852 6.594788 AAACAGTGGCAGAAATCACATATT 57.405 33.333 0.00 0.00 36.43 1.28
3294 3853 6.594788 AACAGTGGCAGAAATCACATATTT 57.405 33.333 0.00 0.00 36.43 1.40
3295 3854 5.957798 ACAGTGGCAGAAATCACATATTTG 58.042 37.500 0.00 0.00 36.43 2.32
3296 3855 5.711506 ACAGTGGCAGAAATCACATATTTGA 59.288 36.000 0.00 0.00 36.43 2.69
3297 3856 6.032094 CAGTGGCAGAAATCACATATTTGAC 58.968 40.000 0.00 0.00 36.43 3.18
3298 3857 5.126061 AGTGGCAGAAATCACATATTTGACC 59.874 40.000 0.00 0.00 36.43 4.02
3299 3858 5.126061 GTGGCAGAAATCACATATTTGACCT 59.874 40.000 0.00 0.00 34.32 3.85
3300 3859 5.125900 TGGCAGAAATCACATATTTGACCTG 59.874 40.000 10.82 10.82 0.00 4.00
3301 3860 5.357878 GGCAGAAATCACATATTTGACCTGA 59.642 40.000 15.94 0.00 0.00 3.86
3302 3861 6.459298 GGCAGAAATCACATATTTGACCTGAG 60.459 42.308 15.94 1.99 0.00 3.35
3303 3862 6.459298 GCAGAAATCACATATTTGACCTGAGG 60.459 42.308 15.94 0.00 0.00 3.86
3304 3863 6.825213 CAGAAATCACATATTTGACCTGAGGA 59.175 38.462 4.99 0.00 0.00 3.71
3305 3864 6.825721 AGAAATCACATATTTGACCTGAGGAC 59.174 38.462 4.99 0.00 0.00 3.85
3306 3865 4.123497 TCACATATTTGACCTGAGGACG 57.877 45.455 4.99 0.00 0.00 4.79
3307 3866 3.767131 TCACATATTTGACCTGAGGACGA 59.233 43.478 4.99 0.00 0.00 4.20
3308 3867 4.221924 TCACATATTTGACCTGAGGACGAA 59.778 41.667 4.99 5.66 0.00 3.85
3309 3868 4.935205 CACATATTTGACCTGAGGACGAAA 59.065 41.667 4.99 3.37 0.00 3.46
3310 3869 5.586243 CACATATTTGACCTGAGGACGAAAT 59.414 40.000 4.99 10.39 0.00 2.17
3311 3870 5.817816 ACATATTTGACCTGAGGACGAAATC 59.182 40.000 4.99 0.00 0.00 2.17
3312 3871 3.762407 TTTGACCTGAGGACGAAATCA 57.238 42.857 4.99 0.00 0.00 2.57
3313 3872 3.762407 TTGACCTGAGGACGAAATCAA 57.238 42.857 4.99 0.00 0.00 2.57
3314 3873 3.762407 TGACCTGAGGACGAAATCAAA 57.238 42.857 4.99 0.00 0.00 2.69
3315 3874 4.286297 TGACCTGAGGACGAAATCAAAT 57.714 40.909 4.99 0.00 0.00 2.32
3316 3875 4.253685 TGACCTGAGGACGAAATCAAATC 58.746 43.478 4.99 0.00 0.00 2.17
3317 3876 4.253685 GACCTGAGGACGAAATCAAATCA 58.746 43.478 4.99 0.00 0.00 2.57
3318 3877 4.848357 ACCTGAGGACGAAATCAAATCAT 58.152 39.130 4.99 0.00 0.00 2.45
3319 3878 5.989477 ACCTGAGGACGAAATCAAATCATA 58.011 37.500 4.99 0.00 0.00 2.15
3320 3879 6.414732 ACCTGAGGACGAAATCAAATCATAA 58.585 36.000 4.99 0.00 0.00 1.90
3321 3880 6.316390 ACCTGAGGACGAAATCAAATCATAAC 59.684 38.462 4.99 0.00 0.00 1.89
3322 3881 6.238484 CCTGAGGACGAAATCAAATCATAACC 60.238 42.308 0.00 0.00 0.00 2.85
3323 3882 6.414732 TGAGGACGAAATCAAATCATAACCT 58.585 36.000 0.00 0.00 0.00 3.50
3324 3883 6.316140 TGAGGACGAAATCAAATCATAACCTG 59.684 38.462 0.00 0.00 0.00 4.00
3325 3884 6.414732 AGGACGAAATCAAATCATAACCTGA 58.585 36.000 0.00 0.00 38.53 3.86
3326 3885 6.316390 AGGACGAAATCAAATCATAACCTGAC 59.684 38.462 0.00 0.00 36.48 3.51
3327 3886 6.436843 ACGAAATCAAATCATAACCTGACC 57.563 37.500 0.00 0.00 36.48 4.02
3328 3887 6.180472 ACGAAATCAAATCATAACCTGACCT 58.820 36.000 0.00 0.00 36.48 3.85
3329 3888 6.094048 ACGAAATCAAATCATAACCTGACCTG 59.906 38.462 0.00 0.00 36.48 4.00
3330 3889 6.458751 CGAAATCAAATCATAACCTGACCTGG 60.459 42.308 0.00 0.00 36.48 4.45
3331 3890 4.927267 TCAAATCATAACCTGACCTGGT 57.073 40.909 0.00 0.00 43.11 4.00
3340 3899 3.564053 ACCTGACCTGGTTACGAAAAA 57.436 42.857 0.00 0.00 36.89 1.94
3358 3917 4.590850 AAAAATTTCACTCTGCTGACCC 57.409 40.909 0.00 0.00 0.00 4.46
3359 3918 3.515602 AAATTTCACTCTGCTGACCCT 57.484 42.857 0.00 0.00 0.00 4.34
3360 3919 3.515602 AATTTCACTCTGCTGACCCTT 57.484 42.857 0.00 0.00 0.00 3.95
3361 3920 3.515602 ATTTCACTCTGCTGACCCTTT 57.484 42.857 0.00 0.00 0.00 3.11
3362 3921 2.260844 TTCACTCTGCTGACCCTTTG 57.739 50.000 0.00 0.00 0.00 2.77
3363 3922 0.397941 TCACTCTGCTGACCCTTTGG 59.602 55.000 0.00 0.00 37.80 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.668280 GCGAAACGGTGCTCCTCAC 61.668 63.158 2.85 0.00 44.90 3.51
3 4 2.357034 GCGAAACGGTGCTCCTCA 60.357 61.111 2.85 0.00 0.00 3.86
4 5 2.357034 TGCGAAACGGTGCTCCTC 60.357 61.111 2.85 0.00 0.00 3.71
5 6 2.665185 GTGCGAAACGGTGCTCCT 60.665 61.111 2.85 0.00 0.00 3.69
14 15 3.423154 CCTGGGAGCGTGCGAAAC 61.423 66.667 0.00 0.00 0.00 2.78
15 16 2.951475 AAACCTGGGAGCGTGCGAAA 62.951 55.000 0.00 0.00 0.00 3.46
18 19 3.423154 GAAACCTGGGAGCGTGCG 61.423 66.667 0.00 0.00 0.00 5.34
19 20 2.032681 AGAAACCTGGGAGCGTGC 59.967 61.111 0.00 0.00 0.00 5.34
20 21 1.672356 CCAGAAACCTGGGAGCGTG 60.672 63.158 0.00 0.00 45.86 5.34
21 22 2.750350 CCAGAAACCTGGGAGCGT 59.250 61.111 0.00 0.00 45.86 5.07
28 29 0.595095 GAGCTGCAACCAGAAACCTG 59.405 55.000 1.02 0.00 41.77 4.00
29 30 0.538287 GGAGCTGCAACCAGAAACCT 60.538 55.000 0.00 0.00 41.77 3.50
30 31 1.856265 CGGAGCTGCAACCAGAAACC 61.856 60.000 5.91 0.00 41.77 3.27
32 33 0.884704 GACGGAGCTGCAACCAGAAA 60.885 55.000 5.91 0.00 41.77 2.52
34 35 2.343758 GACGGAGCTGCAACCAGA 59.656 61.111 5.91 0.00 41.77 3.86
35 36 2.743928 GGACGGAGCTGCAACCAG 60.744 66.667 5.91 9.95 42.13 4.00
36 37 4.680237 CGGACGGAGCTGCAACCA 62.680 66.667 15.51 0.00 0.00 3.67
39 40 4.314440 AAGCGGACGGAGCTGCAA 62.314 61.111 5.91 0.00 45.31 4.08
40 41 4.742201 GAAGCGGACGGAGCTGCA 62.742 66.667 5.91 0.00 45.31 4.41
54 55 0.110192 GTTTTGCTCCGCTTCCGAAG 60.110 55.000 3.56 3.56 36.29 3.79
55 56 1.512156 GGTTTTGCTCCGCTTCCGAA 61.512 55.000 0.00 0.00 36.29 4.30
56 57 1.964373 GGTTTTGCTCCGCTTCCGA 60.964 57.895 0.00 0.00 36.29 4.55
57 58 1.791103 TTGGTTTTGCTCCGCTTCCG 61.791 55.000 0.00 0.00 0.00 4.30
58 59 0.387565 TTTGGTTTTGCTCCGCTTCC 59.612 50.000 0.00 0.00 0.00 3.46
59 60 1.487482 GTTTGGTTTTGCTCCGCTTC 58.513 50.000 0.00 0.00 0.00 3.86
60 61 0.248866 CGTTTGGTTTTGCTCCGCTT 60.249 50.000 0.00 0.00 0.00 4.68
61 62 1.358759 CGTTTGGTTTTGCTCCGCT 59.641 52.632 0.00 0.00 0.00 5.52
62 63 1.660264 CCGTTTGGTTTTGCTCCGC 60.660 57.895 0.00 0.00 0.00 5.54
63 64 1.007849 CCCGTTTGGTTTTGCTCCG 60.008 57.895 0.00 0.00 0.00 4.63
64 65 1.300620 GCCCGTTTGGTTTTGCTCC 60.301 57.895 0.00 0.00 36.04 4.70
65 66 1.300620 GGCCCGTTTGGTTTTGCTC 60.301 57.895 0.00 0.00 36.04 4.26
66 67 2.802724 GGGCCCGTTTGGTTTTGCT 61.803 57.895 5.69 0.00 36.04 3.91
67 68 1.465200 TAGGGCCCGTTTGGTTTTGC 61.465 55.000 18.44 0.00 36.04 3.68
68 69 1.000394 CTTAGGGCCCGTTTGGTTTTG 60.000 52.381 18.44 0.00 36.04 2.44
69 70 1.334160 CTTAGGGCCCGTTTGGTTTT 58.666 50.000 18.44 0.00 36.04 2.43
70 71 0.186630 ACTTAGGGCCCGTTTGGTTT 59.813 50.000 18.44 0.00 36.04 3.27
71 72 0.186630 AACTTAGGGCCCGTTTGGTT 59.813 50.000 18.44 15.09 36.04 3.67
72 73 0.186630 AAACTTAGGGCCCGTTTGGT 59.813 50.000 21.38 12.78 36.04 3.67
73 74 0.601057 CAAACTTAGGGCCCGTTTGG 59.399 55.000 31.18 19.53 42.12 3.28
74 75 0.038618 GCAAACTTAGGGCCCGTTTG 60.039 55.000 32.99 32.99 46.15 2.93
75 76 0.178973 AGCAAACTTAGGGCCCGTTT 60.179 50.000 18.44 18.00 0.00 3.60
76 77 0.608308 GAGCAAACTTAGGGCCCGTT 60.608 55.000 18.44 12.33 0.00 4.44
77 78 1.002502 GAGCAAACTTAGGGCCCGT 60.003 57.895 18.44 5.35 0.00 5.28
78 79 2.106683 CGAGCAAACTTAGGGCCCG 61.107 63.158 18.44 4.53 0.00 6.13
79 80 0.608308 AACGAGCAAACTTAGGGCCC 60.608 55.000 16.46 16.46 0.00 5.80
80 81 1.244816 AAACGAGCAAACTTAGGGCC 58.755 50.000 0.00 0.00 0.00 5.80
81 82 2.809696 TGTAAACGAGCAAACTTAGGGC 59.190 45.455 0.00 0.00 0.00 5.19
82 83 4.083484 CCTTGTAAACGAGCAAACTTAGGG 60.083 45.833 0.00 0.00 0.00 3.53
83 84 4.514066 ACCTTGTAAACGAGCAAACTTAGG 59.486 41.667 0.00 0.00 0.00 2.69
84 85 5.668558 ACCTTGTAAACGAGCAAACTTAG 57.331 39.130 0.00 0.00 0.00 2.18
85 86 6.514947 TCTACCTTGTAAACGAGCAAACTTA 58.485 36.000 0.00 0.00 0.00 2.24
86 87 5.362263 TCTACCTTGTAAACGAGCAAACTT 58.638 37.500 0.00 0.00 0.00 2.66
87 88 4.952460 TCTACCTTGTAAACGAGCAAACT 58.048 39.130 0.00 0.00 0.00 2.66
88 89 5.235831 AGTTCTACCTTGTAAACGAGCAAAC 59.764 40.000 0.00 0.00 0.00 2.93
89 90 5.362263 AGTTCTACCTTGTAAACGAGCAAA 58.638 37.500 0.00 0.00 0.00 3.68
90 91 4.952460 AGTTCTACCTTGTAAACGAGCAA 58.048 39.130 0.00 0.00 0.00 3.91
91 92 4.595762 AGTTCTACCTTGTAAACGAGCA 57.404 40.909 0.00 0.00 0.00 4.26
92 93 6.253083 GTCATAGTTCTACCTTGTAAACGAGC 59.747 42.308 0.00 0.00 0.00 5.03
93 94 7.536855 AGTCATAGTTCTACCTTGTAAACGAG 58.463 38.462 0.00 0.00 0.00 4.18
94 95 7.458409 AGTCATAGTTCTACCTTGTAAACGA 57.542 36.000 0.00 0.00 0.00 3.85
95 96 7.063074 CCAAGTCATAGTTCTACCTTGTAAACG 59.937 40.741 0.00 0.00 0.00 3.60
96 97 7.876582 ACCAAGTCATAGTTCTACCTTGTAAAC 59.123 37.037 0.00 0.00 0.00 2.01
97 98 7.970102 ACCAAGTCATAGTTCTACCTTGTAAA 58.030 34.615 0.00 0.00 0.00 2.01
98 99 7.549147 ACCAAGTCATAGTTCTACCTTGTAA 57.451 36.000 0.00 0.00 0.00 2.41
99 100 7.549147 AACCAAGTCATAGTTCTACCTTGTA 57.451 36.000 0.00 0.00 0.00 2.41
100 101 6.435292 AACCAAGTCATAGTTCTACCTTGT 57.565 37.500 0.00 0.00 0.00 3.16
101 102 5.577164 CGAACCAAGTCATAGTTCTACCTTG 59.423 44.000 0.00 0.00 38.17 3.61
102 103 5.337330 CCGAACCAAGTCATAGTTCTACCTT 60.337 44.000 0.00 0.00 38.17 3.50
103 104 4.159879 CCGAACCAAGTCATAGTTCTACCT 59.840 45.833 0.00 0.00 38.17 3.08
104 105 4.081807 ACCGAACCAAGTCATAGTTCTACC 60.082 45.833 0.00 0.00 38.17 3.18
105 106 5.069501 ACCGAACCAAGTCATAGTTCTAC 57.930 43.478 0.00 0.00 38.17 2.59
106 107 4.159135 GGACCGAACCAAGTCATAGTTCTA 59.841 45.833 0.00 0.00 38.17 2.10
107 108 3.056035 GGACCGAACCAAGTCATAGTTCT 60.056 47.826 0.00 0.00 38.17 3.01
108 109 3.259902 GGACCGAACCAAGTCATAGTTC 58.740 50.000 0.00 0.00 37.20 3.01
109 110 2.635915 TGGACCGAACCAAGTCATAGTT 59.364 45.455 0.00 0.00 36.96 2.24
110 111 2.233922 CTGGACCGAACCAAGTCATAGT 59.766 50.000 2.56 0.00 39.59 2.12
111 112 2.418746 CCTGGACCGAACCAAGTCATAG 60.419 54.545 0.00 0.00 39.59 2.23
112 113 1.553248 CCTGGACCGAACCAAGTCATA 59.447 52.381 0.00 0.00 39.59 2.15
113 114 0.324943 CCTGGACCGAACCAAGTCAT 59.675 55.000 0.00 0.00 39.59 3.06
114 115 1.752198 CCTGGACCGAACCAAGTCA 59.248 57.895 0.00 0.00 39.59 3.41
115 116 1.003718 CCCTGGACCGAACCAAGTC 60.004 63.158 0.00 0.00 39.59 3.01
116 117 3.157680 CCCTGGACCGAACCAAGT 58.842 61.111 0.00 0.00 39.59 3.16
117 118 2.359975 GCCCTGGACCGAACCAAG 60.360 66.667 0.00 0.00 39.59 3.61
118 119 3.961414 GGCCCTGGACCGAACCAA 61.961 66.667 0.00 0.00 39.59 3.67
119 120 4.974438 AGGCCCTGGACCGAACCA 62.974 66.667 0.00 0.00 38.33 3.67
120 121 3.205851 AAAGGCCCTGGACCGAACC 62.206 63.158 0.00 0.00 0.00 3.62
121 122 1.971695 CAAAGGCCCTGGACCGAAC 60.972 63.158 0.00 0.00 0.00 3.95
122 123 2.434331 CAAAGGCCCTGGACCGAA 59.566 61.111 0.00 0.00 0.00 4.30
123 124 3.646715 CCAAAGGCCCTGGACCGA 61.647 66.667 15.21 0.00 35.85 4.69
124 125 3.920093 GACCAAAGGCCCTGGACCG 62.920 68.421 24.93 2.27 37.40 4.79
125 126 2.035783 GACCAAAGGCCCTGGACC 59.964 66.667 24.93 13.53 37.40 4.46
126 127 2.359975 CGACCAAAGGCCCTGGAC 60.360 66.667 24.93 18.34 37.40 4.02
127 128 4.344865 GCGACCAAAGGCCCTGGA 62.345 66.667 24.93 0.00 37.40 3.86
128 129 2.966732 TAGCGACCAAAGGCCCTGG 61.967 63.158 18.08 18.08 40.05 4.45
129 130 1.745489 GTAGCGACCAAAGGCCCTG 60.745 63.158 0.00 0.00 0.00 4.45
130 131 2.185310 CTGTAGCGACCAAAGGCCCT 62.185 60.000 0.00 0.00 0.00 5.19
131 132 1.745489 CTGTAGCGACCAAAGGCCC 60.745 63.158 0.00 0.00 0.00 5.80
132 133 1.019805 GTCTGTAGCGACCAAAGGCC 61.020 60.000 0.00 0.00 0.00 5.19
133 134 2.457080 GTCTGTAGCGACCAAAGGC 58.543 57.895 0.00 0.00 0.00 4.35
140 141 1.226435 CAGCGAGGTCTGTAGCGAC 60.226 63.158 0.00 0.00 34.34 5.19
141 142 3.052620 GCAGCGAGGTCTGTAGCGA 62.053 63.158 0.00 0.00 36.49 4.93
142 143 2.580867 GCAGCGAGGTCTGTAGCG 60.581 66.667 0.00 0.00 36.49 4.26
143 144 2.343163 ATCGCAGCGAGGTCTGTAGC 62.343 60.000 24.08 0.00 39.91 3.58
144 145 0.101399 AATCGCAGCGAGGTCTGTAG 59.899 55.000 24.08 0.00 39.91 2.74
145 146 0.179137 CAATCGCAGCGAGGTCTGTA 60.179 55.000 24.08 0.00 39.91 2.74
146 147 1.446792 CAATCGCAGCGAGGTCTGT 60.447 57.895 24.08 1.46 39.91 3.41
147 148 0.529337 ATCAATCGCAGCGAGGTCTG 60.529 55.000 24.08 16.44 39.91 3.51
148 149 0.176680 AATCAATCGCAGCGAGGTCT 59.823 50.000 24.08 2.75 39.91 3.85
149 150 0.302890 CAATCAATCGCAGCGAGGTC 59.697 55.000 24.08 0.00 39.91 3.85
150 151 0.391661 ACAATCAATCGCAGCGAGGT 60.392 50.000 24.08 10.88 39.91 3.85
151 152 1.570813 TACAATCAATCGCAGCGAGG 58.429 50.000 24.08 17.43 39.91 4.63
152 153 2.796593 TCATACAATCAATCGCAGCGAG 59.203 45.455 24.08 10.78 39.91 5.03
153 154 2.820330 TCATACAATCAATCGCAGCGA 58.180 42.857 22.06 22.06 41.13 4.93
154 155 3.590720 TTCATACAATCAATCGCAGCG 57.409 42.857 9.06 9.06 0.00 5.18
155 156 5.745294 ACAAATTCATACAATCAATCGCAGC 59.255 36.000 0.00 0.00 0.00 5.25
156 157 6.139638 CGACAAATTCATACAATCAATCGCAG 59.860 38.462 0.00 0.00 0.00 5.18
157 158 5.964751 CGACAAATTCATACAATCAATCGCA 59.035 36.000 0.00 0.00 0.00 5.10
158 159 6.191661 TCGACAAATTCATACAATCAATCGC 58.808 36.000 0.00 0.00 0.00 4.58
159 160 7.904977 ACTTCGACAAATTCATACAATCAATCG 59.095 33.333 0.00 0.00 0.00 3.34
160 161 9.003112 CACTTCGACAAATTCATACAATCAATC 57.997 33.333 0.00 0.00 0.00 2.67
161 162 8.729756 TCACTTCGACAAATTCATACAATCAAT 58.270 29.630 0.00 0.00 0.00 2.57
162 163 8.093659 TCACTTCGACAAATTCATACAATCAA 57.906 30.769 0.00 0.00 0.00 2.57
163 164 7.387673 ACTCACTTCGACAAATTCATACAATCA 59.612 33.333 0.00 0.00 0.00 2.57
164 165 7.743104 ACTCACTTCGACAAATTCATACAATC 58.257 34.615 0.00 0.00 0.00 2.67
165 166 7.672983 ACTCACTTCGACAAATTCATACAAT 57.327 32.000 0.00 0.00 0.00 2.71
166 167 8.596271 TTACTCACTTCGACAAATTCATACAA 57.404 30.769 0.00 0.00 0.00 2.41
167 168 8.771920 ATTACTCACTTCGACAAATTCATACA 57.228 30.769 0.00 0.00 0.00 2.29
169 170 9.863845 TGTATTACTCACTTCGACAAATTCATA 57.136 29.630 0.00 0.00 0.00 2.15
170 171 8.771920 TGTATTACTCACTTCGACAAATTCAT 57.228 30.769 0.00 0.00 0.00 2.57
171 172 8.596271 TTGTATTACTCACTTCGACAAATTCA 57.404 30.769 0.00 0.00 0.00 2.57
177 178 9.863845 TGAAATATTGTATTACTCACTTCGACA 57.136 29.630 0.00 0.00 0.00 4.35
179 180 9.309516 GGTGAAATATTGTATTACTCACTTCGA 57.690 33.333 11.84 0.00 33.77 3.71
180 181 8.548721 GGGTGAAATATTGTATTACTCACTTCG 58.451 37.037 11.84 0.00 33.77 3.79
181 182 8.548721 CGGGTGAAATATTGTATTACTCACTTC 58.451 37.037 11.84 6.27 33.77 3.01
182 183 8.262227 TCGGGTGAAATATTGTATTACTCACTT 58.738 33.333 11.84 0.00 33.77 3.16
183 184 7.788026 TCGGGTGAAATATTGTATTACTCACT 58.212 34.615 11.84 0.00 33.77 3.41
184 185 8.428186 TTCGGGTGAAATATTGTATTACTCAC 57.572 34.615 5.87 5.87 0.00 3.51
185 186 9.451002 TTTTCGGGTGAAATATTGTATTACTCA 57.549 29.630 0.00 0.00 43.32 3.41
210 211 3.922375 TCCCTCCACACAATTCCTTTTT 58.078 40.909 0.00 0.00 0.00 1.94
211 212 3.611025 TCCCTCCACACAATTCCTTTT 57.389 42.857 0.00 0.00 0.00 2.27
212 213 3.075882 TCATCCCTCCACACAATTCCTTT 59.924 43.478 0.00 0.00 0.00 3.11
213 214 2.649312 TCATCCCTCCACACAATTCCTT 59.351 45.455 0.00 0.00 0.00 3.36
214 215 2.278245 TCATCCCTCCACACAATTCCT 58.722 47.619 0.00 0.00 0.00 3.36
215 216 2.806945 TCATCCCTCCACACAATTCC 57.193 50.000 0.00 0.00 0.00 3.01
216 217 2.874701 CGATCATCCCTCCACACAATTC 59.125 50.000 0.00 0.00 0.00 2.17
217 218 2.239654 ACGATCATCCCTCCACACAATT 59.760 45.455 0.00 0.00 0.00 2.32
218 219 1.839994 ACGATCATCCCTCCACACAAT 59.160 47.619 0.00 0.00 0.00 2.71
219 220 1.275666 ACGATCATCCCTCCACACAA 58.724 50.000 0.00 0.00 0.00 3.33
220 221 1.275666 AACGATCATCCCTCCACACA 58.724 50.000 0.00 0.00 0.00 3.72
221 222 3.753294 ATAACGATCATCCCTCCACAC 57.247 47.619 0.00 0.00 0.00 3.82
222 223 4.444306 GGAAATAACGATCATCCCTCCACA 60.444 45.833 0.00 0.00 0.00 4.17
223 224 4.065789 GGAAATAACGATCATCCCTCCAC 58.934 47.826 0.00 0.00 0.00 4.02
237 238 2.492088 GCCAACACAGGGAGGAAATAAC 59.508 50.000 0.00 0.00 0.00 1.89
272 273 6.374417 ACAGTACTACTCCCAAACATCATT 57.626 37.500 0.00 0.00 0.00 2.57
275 276 5.421374 AGGTACAGTACTACTCCCAAACATC 59.579 44.000 10.62 0.00 0.00 3.06
277 278 4.744237 AGGTACAGTACTACTCCCAAACA 58.256 43.478 10.62 0.00 0.00 2.83
278 279 5.735285 AAGGTACAGTACTACTCCCAAAC 57.265 43.478 10.62 0.00 0.00 2.93
279 280 5.840149 TCAAAGGTACAGTACTACTCCCAAA 59.160 40.000 10.62 0.00 0.00 3.28
280 281 5.396485 TCAAAGGTACAGTACTACTCCCAA 58.604 41.667 10.62 0.00 0.00 4.12
282 283 5.624052 GCTTCAAAGGTACAGTACTACTCCC 60.624 48.000 10.62 0.00 0.00 4.30
283 284 5.047519 TGCTTCAAAGGTACAGTACTACTCC 60.048 44.000 10.62 0.00 0.00 3.85
284 285 6.022163 TGCTTCAAAGGTACAGTACTACTC 57.978 41.667 10.62 0.00 0.00 2.59
285 286 6.607004 ATGCTTCAAAGGTACAGTACTACT 57.393 37.500 10.62 0.00 0.00 2.57
286 287 8.654215 GTTAATGCTTCAAAGGTACAGTACTAC 58.346 37.037 10.62 0.00 0.00 2.73
287 288 8.591072 AGTTAATGCTTCAAAGGTACAGTACTA 58.409 33.333 10.62 0.00 0.00 1.82
290 291 8.685838 AAAGTTAATGCTTCAAAGGTACAGTA 57.314 30.769 0.00 0.00 0.00 2.74
339 372 5.681179 GCAAGGAAACCAGCAGAAAGTTAAA 60.681 40.000 0.00 0.00 0.00 1.52
502 909 1.280457 GGCTCTCCCTCTTTCTTGGA 58.720 55.000 0.00 0.00 0.00 3.53
567 1014 9.809096 AGAAAGATCCTCAAAAAGAAAAGAAAC 57.191 29.630 0.00 0.00 0.00 2.78
573 1020 8.638873 GGGTAAAGAAAGATCCTCAAAAAGAAA 58.361 33.333 0.00 0.00 0.00 2.52
574 1021 8.004801 AGGGTAAAGAAAGATCCTCAAAAAGAA 58.995 33.333 0.00 0.00 0.00 2.52
575 1022 7.526918 AGGGTAAAGAAAGATCCTCAAAAAGA 58.473 34.615 0.00 0.00 0.00 2.52
576 1023 7.767250 AGGGTAAAGAAAGATCCTCAAAAAG 57.233 36.000 0.00 0.00 0.00 2.27
577 1024 8.547481 AAAGGGTAAAGAAAGATCCTCAAAAA 57.453 30.769 0.00 0.00 0.00 1.94
578 1025 8.547481 AAAAGGGTAAAGAAAGATCCTCAAAA 57.453 30.769 0.00 0.00 0.00 2.44
579 1026 8.547481 AAAAAGGGTAAAGAAAGATCCTCAAA 57.453 30.769 0.00 0.00 0.00 2.69
602 1049 5.473846 TGACACACCACTACAGAAACAAAAA 59.526 36.000 0.00 0.00 0.00 1.94
603 1050 5.004448 TGACACACCACTACAGAAACAAAA 58.996 37.500 0.00 0.00 0.00 2.44
604 1051 4.580868 TGACACACCACTACAGAAACAAA 58.419 39.130 0.00 0.00 0.00 2.83
605 1052 4.188462 CTGACACACCACTACAGAAACAA 58.812 43.478 0.00 0.00 0.00 2.83
606 1053 3.196901 ACTGACACACCACTACAGAAACA 59.803 43.478 0.00 0.00 33.53 2.83
607 1054 3.793559 ACTGACACACCACTACAGAAAC 58.206 45.455 0.00 0.00 33.53 2.78
631 1078 0.314935 CCCGTTTGAAATGCAGCTGT 59.685 50.000 16.64 0.00 0.00 4.40
648 1095 4.607293 AGTTTTTCCTCATCTTTTGCCC 57.393 40.909 0.00 0.00 0.00 5.36
675 1122 2.610694 CCAACCTGCAGAGCACACG 61.611 63.158 17.39 0.00 33.79 4.49
681 1128 2.360852 CAGCCCCAACCTGCAGAG 60.361 66.667 17.39 8.04 0.00 3.35
682 1129 2.296945 AAACAGCCCCAACCTGCAGA 62.297 55.000 17.39 0.00 33.65 4.26
683 1130 1.833934 AAACAGCCCCAACCTGCAG 60.834 57.895 6.78 6.78 33.65 4.41
716 1166 0.105408 AAACTAGTGCCGTTGTCCGT 59.895 50.000 0.00 0.00 33.66 4.69
747 1198 3.020105 CGTGTCGTGTCGTTGCGA 61.020 61.111 0.00 0.00 34.54 5.10
755 1206 2.278989 CAACCGTCCGTGTCGTGT 60.279 61.111 0.00 0.00 0.00 4.49
817 1284 4.057428 GTGGAGCGAGCGTCCAGT 62.057 66.667 13.73 0.00 45.00 4.00
818 1285 4.803426 GGTGGAGCGAGCGTCCAG 62.803 72.222 13.73 0.00 45.00 3.86
878 1346 4.660938 GTGGACTGGTGGGGGTGC 62.661 72.222 0.00 0.00 0.00 5.01
880 1348 4.525028 TGGTGGACTGGTGGGGGT 62.525 66.667 0.00 0.00 0.00 4.95
882 1350 4.329545 CGTGGTGGACTGGTGGGG 62.330 72.222 0.00 0.00 0.00 4.96
883 1351 3.530910 GACGTGGTGGACTGGTGGG 62.531 68.421 0.00 0.00 0.00 4.61
884 1352 2.030562 GACGTGGTGGACTGGTGG 59.969 66.667 0.00 0.00 0.00 4.61
885 1353 1.006102 GAGACGTGGTGGACTGGTG 60.006 63.158 0.00 0.00 0.00 4.17
886 1354 0.759436 AAGAGACGTGGTGGACTGGT 60.759 55.000 0.00 0.00 0.00 4.00
887 1355 0.393077 AAAGAGACGTGGTGGACTGG 59.607 55.000 0.00 0.00 0.00 4.00
888 1356 1.784525 GAAAGAGACGTGGTGGACTG 58.215 55.000 0.00 0.00 0.00 3.51
889 1357 0.314302 CGAAAGAGACGTGGTGGACT 59.686 55.000 0.00 0.00 0.00 3.85
890 1358 0.666577 CCGAAAGAGACGTGGTGGAC 60.667 60.000 0.00 0.00 0.00 4.02
891 1359 0.824595 TCCGAAAGAGACGTGGTGGA 60.825 55.000 0.00 0.00 0.00 4.02
902 1370 0.038526 GAGTTGACGGCTCCGAAAGA 60.039 55.000 15.95 0.00 42.83 2.52
905 1373 1.289066 CAGAGTTGACGGCTCCGAA 59.711 57.895 15.95 0.00 42.83 4.30
926 1394 1.216710 GGAACGAGGGAGAGCAGTG 59.783 63.158 0.00 0.00 0.00 3.66
927 1395 1.077625 AGGAACGAGGGAGAGCAGT 59.922 57.895 0.00 0.00 0.00 4.40
998 1467 0.709397 TTGGGGCTTGGAATCCATGA 59.291 50.000 18.05 0.00 31.53 3.07
1180 1649 0.178975 AGGAGGCGAGGAGATAGGTG 60.179 60.000 0.00 0.00 0.00 4.00
1264 1733 0.894835 CAAACACTAACCATGCCCCC 59.105 55.000 0.00 0.00 0.00 5.40
1265 1734 1.272212 CACAAACACTAACCATGCCCC 59.728 52.381 0.00 0.00 0.00 5.80
1266 1735 1.336795 GCACAAACACTAACCATGCCC 60.337 52.381 0.00 0.00 0.00 5.36
1267 1736 1.613437 AGCACAAACACTAACCATGCC 59.387 47.619 0.00 0.00 31.94 4.40
1268 1737 2.293122 TCAGCACAAACACTAACCATGC 59.707 45.455 0.00 0.00 0.00 4.06
1269 1738 3.606846 CGTCAGCACAAACACTAACCATG 60.607 47.826 0.00 0.00 0.00 3.66
1270 1739 2.548057 CGTCAGCACAAACACTAACCAT 59.452 45.455 0.00 0.00 0.00 3.55
1283 1752 1.269051 CCCCAAAAGAAACGTCAGCAC 60.269 52.381 0.00 0.00 0.00 4.40
1292 1761 3.831911 AGCAATCGATTCCCCAAAAGAAA 59.168 39.130 7.92 0.00 0.00 2.52
1295 1764 2.736400 GCAGCAATCGATTCCCCAAAAG 60.736 50.000 7.92 0.00 0.00 2.27
1450 1925 2.475111 CGTGCGGTATATGGTTCATCAC 59.525 50.000 0.00 0.00 0.00 3.06
1451 1926 2.362717 TCGTGCGGTATATGGTTCATCA 59.637 45.455 0.00 0.00 0.00 3.07
1452 1927 2.987149 CTCGTGCGGTATATGGTTCATC 59.013 50.000 0.00 0.00 0.00 2.92
1453 1928 2.626266 TCTCGTGCGGTATATGGTTCAT 59.374 45.455 0.00 0.00 0.00 2.57
1454 1929 2.025898 TCTCGTGCGGTATATGGTTCA 58.974 47.619 0.00 0.00 0.00 3.18
1455 1930 2.787601 TCTCGTGCGGTATATGGTTC 57.212 50.000 0.00 0.00 0.00 3.62
1456 1931 2.626266 TCATCTCGTGCGGTATATGGTT 59.374 45.455 0.00 0.00 0.00 3.67
1457 1932 2.235891 TCATCTCGTGCGGTATATGGT 58.764 47.619 0.00 0.00 0.00 3.55
1458 1933 3.119495 TCATCATCTCGTGCGGTATATGG 60.119 47.826 0.00 0.00 0.00 2.74
1486 1961 0.035820 TGTCTAATCGGTTGGGTGCC 60.036 55.000 0.00 0.00 0.00 5.01
1489 1964 4.019681 TGAAAGATGTCTAATCGGTTGGGT 60.020 41.667 0.00 0.00 0.00 4.51
1490 1965 4.513442 TGAAAGATGTCTAATCGGTTGGG 58.487 43.478 0.00 0.00 0.00 4.12
1496 1971 8.689251 TTACTGAACTGAAAGATGTCTAATCG 57.311 34.615 0.00 0.00 37.43 3.34
1537 2012 0.693049 AGGTTCATGGGTCACTGGTC 59.307 55.000 0.00 0.00 0.00 4.02
1538 2013 0.401738 CAGGTTCATGGGTCACTGGT 59.598 55.000 0.00 0.00 0.00 4.00
1539 2014 0.401738 ACAGGTTCATGGGTCACTGG 59.598 55.000 0.00 0.00 0.00 4.00
1540 2015 1.202806 ACACAGGTTCATGGGTCACTG 60.203 52.381 0.00 0.00 27.87 3.66
1541 2016 1.140312 ACACAGGTTCATGGGTCACT 58.860 50.000 0.00 0.00 27.87 3.41
1542 2017 1.238439 CACACAGGTTCATGGGTCAC 58.762 55.000 0.00 0.00 33.49 3.67
1543 2018 0.110295 CCACACAGGTTCATGGGTCA 59.890 55.000 0.00 0.00 33.49 4.02
1585 2060 0.396435 CATCCGTAATGCTAGGCCCA 59.604 55.000 0.00 0.00 0.00 5.36
1654 2129 5.533482 GTCTGCTGGAATATCTTGTCGTAT 58.467 41.667 0.00 0.00 0.00 3.06
1681 2156 1.005748 CTCGTCAGGCAAGCACTCA 60.006 57.895 0.00 0.00 0.00 3.41
1696 2171 0.389166 ACGCCTTCTTGAGCTTCTCG 60.389 55.000 0.00 0.00 32.35 4.04
1762 2237 1.515954 CTTGGCGGTGGAGACGTAT 59.484 57.895 0.00 0.00 0.00 3.06
1898 2379 8.441312 AAAATGTTCGTTTCTAGACCAAACTA 57.559 30.769 0.00 0.00 32.46 2.24
1899 2380 6.937436 AAATGTTCGTTTCTAGACCAAACT 57.063 33.333 0.00 0.00 32.46 2.66
1902 2384 6.928979 TGAAAATGTTCGTTTCTAGACCAA 57.071 33.333 0.00 0.00 36.46 3.67
2072 2561 7.715249 TCTTGTTCAATGCTATTAGTATGGGAC 59.285 37.037 1.55 1.55 0.00 4.46
2411 2905 0.843309 ATGGGCCATCACAACGGATA 59.157 50.000 14.78 0.00 0.00 2.59
2681 3184 4.330074 GCCGCATTCACCATAGACATATAC 59.670 45.833 0.00 0.00 0.00 1.47
2694 3197 0.109179 TTGAAGCATGCCGCATTCAC 60.109 50.000 15.66 0.00 46.13 3.18
2726 3229 8.091385 TCTCGGTAGATTTTAAACTCAAAACC 57.909 34.615 8.13 10.14 30.57 3.27
2727 3230 8.985805 TCTCTCGGTAGATTTTAAACTCAAAAC 58.014 33.333 8.13 3.63 30.57 2.43
2804 3315 1.801395 GCAGCTCGCGTATTGGACTTA 60.801 52.381 5.77 0.00 0.00 2.24
2862 3391 1.133513 TGAAGCACAATCACCCTTGGT 60.134 47.619 0.00 0.00 35.62 3.67
2863 3392 1.270550 GTGAAGCACAATCACCCTTGG 59.729 52.381 0.00 0.00 41.02 3.61
2864 3393 1.069022 CGTGAAGCACAATCACCCTTG 60.069 52.381 0.00 0.00 43.34 3.61
2944 3503 5.766670 TCTTCATGAAGCACAATCACTCTTT 59.233 36.000 27.45 0.00 38.28 2.52
2985 3544 4.881019 AGATATTTGAGGTGATCTCCGG 57.119 45.455 8.14 0.00 41.76 5.14
3001 3560 4.386711 TGTCGATCACTCGTGGTAGATAT 58.613 43.478 0.00 0.00 45.25 1.63
3036 3595 8.928270 TTCGTGAATCTTTATAGACTTCTTCC 57.072 34.615 0.00 0.00 31.99 3.46
3040 3599 9.790389 TCTTCTTCGTGAATCTTTATAGACTTC 57.210 33.333 0.00 0.00 33.71 3.01
3041 3600 9.796120 CTCTTCTTCGTGAATCTTTATAGACTT 57.204 33.333 0.00 0.00 33.71 3.01
3043 3602 9.228636 GACTCTTCTTCGTGAATCTTTATAGAC 57.771 37.037 0.00 0.00 33.71 2.59
3044 3603 9.179909 AGACTCTTCTTCGTGAATCTTTATAGA 57.820 33.333 0.00 0.00 33.71 1.98
3045 3604 9.796120 AAGACTCTTCTTCGTGAATCTTTATAG 57.204 33.333 0.00 0.00 37.55 1.31
3048 3607 9.976511 TTTAAGACTCTTCTTCGTGAATCTTTA 57.023 29.630 0.00 3.79 41.48 1.85
3134 3693 1.556911 GAGCATTCCTCACTTCCTCCA 59.443 52.381 0.00 0.00 40.45 3.86
3156 3715 5.633601 GCCTTTTAAGTCACCAATGCTAAAC 59.366 40.000 0.00 0.00 0.00 2.01
3266 3825 5.616270 TGTGATTTCTGCCACTGTTTACTA 58.384 37.500 0.00 0.00 34.57 1.82
3279 3838 6.825213 TCCTCAGGTCAAATATGTGATTTCTG 59.175 38.462 0.00 7.91 0.00 3.02
3280 3839 6.825721 GTCCTCAGGTCAAATATGTGATTTCT 59.174 38.462 0.00 0.00 0.00 2.52
3281 3840 6.238211 CGTCCTCAGGTCAAATATGTGATTTC 60.238 42.308 0.00 0.00 0.00 2.17
3282 3841 5.586243 CGTCCTCAGGTCAAATATGTGATTT 59.414 40.000 0.00 0.00 0.00 2.17
3283 3842 5.104941 TCGTCCTCAGGTCAAATATGTGATT 60.105 40.000 0.00 0.00 0.00 2.57
3284 3843 4.405680 TCGTCCTCAGGTCAAATATGTGAT 59.594 41.667 0.00 0.00 0.00 3.06
3285 3844 3.767131 TCGTCCTCAGGTCAAATATGTGA 59.233 43.478 0.00 0.00 0.00 3.58
3286 3845 4.123497 TCGTCCTCAGGTCAAATATGTG 57.877 45.455 0.00 0.00 0.00 3.21
3287 3846 4.819105 TTCGTCCTCAGGTCAAATATGT 57.181 40.909 0.00 0.00 0.00 2.29
3288 3847 5.817296 TGATTTCGTCCTCAGGTCAAATATG 59.183 40.000 0.00 0.00 0.00 1.78
3289 3848 5.989477 TGATTTCGTCCTCAGGTCAAATAT 58.011 37.500 0.00 0.00 0.00 1.28
3290 3849 5.414789 TGATTTCGTCCTCAGGTCAAATA 57.585 39.130 0.00 0.00 0.00 1.40
3291 3850 4.286297 TGATTTCGTCCTCAGGTCAAAT 57.714 40.909 0.00 0.00 0.00 2.32
3292 3851 3.762407 TGATTTCGTCCTCAGGTCAAA 57.238 42.857 0.00 0.00 0.00 2.69
3293 3852 3.762407 TTGATTTCGTCCTCAGGTCAA 57.238 42.857 0.00 0.00 0.00 3.18
3294 3853 3.762407 TTTGATTTCGTCCTCAGGTCA 57.238 42.857 0.00 0.00 0.00 4.02
3295 3854 4.253685 TGATTTGATTTCGTCCTCAGGTC 58.746 43.478 0.00 0.00 0.00 3.85
3296 3855 4.286297 TGATTTGATTTCGTCCTCAGGT 57.714 40.909 0.00 0.00 0.00 4.00
3297 3856 6.238484 GGTTATGATTTGATTTCGTCCTCAGG 60.238 42.308 0.00 0.00 0.00 3.86
3298 3857 6.540189 AGGTTATGATTTGATTTCGTCCTCAG 59.460 38.462 0.00 0.00 0.00 3.35
3299 3858 6.316140 CAGGTTATGATTTGATTTCGTCCTCA 59.684 38.462 0.00 0.00 0.00 3.86
3300 3859 6.538742 TCAGGTTATGATTTGATTTCGTCCTC 59.461 38.462 0.00 0.00 31.12 3.71
3301 3860 6.316390 GTCAGGTTATGATTTGATTTCGTCCT 59.684 38.462 0.00 0.00 40.92 3.85
3302 3861 6.458342 GGTCAGGTTATGATTTGATTTCGTCC 60.458 42.308 0.00 0.00 40.92 4.79
3303 3862 6.316390 AGGTCAGGTTATGATTTGATTTCGTC 59.684 38.462 0.00 0.00 40.92 4.20
3304 3863 6.094048 CAGGTCAGGTTATGATTTGATTTCGT 59.906 38.462 0.00 0.00 40.92 3.85
3305 3864 6.458751 CCAGGTCAGGTTATGATTTGATTTCG 60.459 42.308 0.00 0.00 40.92 3.46
3306 3865 6.378280 ACCAGGTCAGGTTATGATTTGATTTC 59.622 38.462 0.00 0.00 39.34 2.17
3307 3866 6.256053 ACCAGGTCAGGTTATGATTTGATTT 58.744 36.000 0.00 0.00 39.34 2.17
3308 3867 5.831103 ACCAGGTCAGGTTATGATTTGATT 58.169 37.500 0.00 0.00 39.34 2.57
3309 3868 5.456921 ACCAGGTCAGGTTATGATTTGAT 57.543 39.130 0.00 0.00 39.34 2.57
3310 3869 4.927267 ACCAGGTCAGGTTATGATTTGA 57.073 40.909 0.00 0.00 39.34 2.69
3320 3879 3.564053 TTTTTCGTAACCAGGTCAGGT 57.436 42.857 0.00 0.00 45.91 4.00
3337 3896 4.218312 AGGGTCAGCAGAGTGAAATTTTT 58.782 39.130 0.00 0.00 0.00 1.94
3338 3897 3.837355 AGGGTCAGCAGAGTGAAATTTT 58.163 40.909 0.00 0.00 0.00 1.82
3339 3898 3.515602 AGGGTCAGCAGAGTGAAATTT 57.484 42.857 0.00 0.00 0.00 1.82
3340 3899 3.515602 AAGGGTCAGCAGAGTGAAATT 57.484 42.857 0.00 0.00 0.00 1.82
3341 3900 3.152341 CAAAGGGTCAGCAGAGTGAAAT 58.848 45.455 0.00 0.00 0.00 2.17
3342 3901 2.575532 CAAAGGGTCAGCAGAGTGAAA 58.424 47.619 0.00 0.00 0.00 2.69
3343 3902 1.202806 CCAAAGGGTCAGCAGAGTGAA 60.203 52.381 0.00 0.00 0.00 3.18
3344 3903 0.397941 CCAAAGGGTCAGCAGAGTGA 59.602 55.000 0.00 0.00 0.00 3.41
3345 3904 2.938354 CCAAAGGGTCAGCAGAGTG 58.062 57.895 0.00 0.00 0.00 3.51



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.