Multiple sequence alignment - TraesCS2B01G189300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G189300 chr2B 100.000 5196 0 0 1 5196 164935804 164940999 0.000000e+00 9596.0
1 TraesCS2B01G189300 chr2B 85.882 85 11 1 1988 2071 535264228 535264312 7.170000e-14 89.8
2 TraesCS2B01G189300 chr2B 88.406 69 7 1 4917 4985 744182420 744182353 1.200000e-11 82.4
3 TraesCS2B01G189300 chr2A 91.984 4678 217 76 384 4985 115752470 115757065 0.000000e+00 6416.0
4 TraesCS2B01G189300 chr2A 87.879 231 22 5 4527 4753 115756638 115756866 3.080000e-67 267.0
5 TraesCS2B01G189300 chr2A 89.855 69 3 4 383 449 115752389 115752455 9.270000e-13 86.1
6 TraesCS2B01G189300 chr2D 92.404 4068 204 54 979 4985 114532266 114536289 0.000000e+00 5703.0
7 TraesCS2B01G189300 chr2D 88.914 451 22 9 383 817 114531337 114531775 9.910000e-147 531.0
8 TraesCS2B01G189300 chr2D 94.898 196 10 0 4985 5180 114536339 114536534 1.820000e-79 307.0
9 TraesCS2B01G189300 chr2D 81.301 369 34 16 1400 1767 11205571 11205905 3.080000e-67 267.0
10 TraesCS2B01G189300 chr2D 86.747 83 10 1 1987 2068 11205934 11206016 1.990000e-14 91.6
11 TraesCS2B01G189300 chr7A 81.720 651 102 12 1408 2054 603588580 603589217 1.280000e-145 527.0
12 TraesCS2B01G189300 chr6D 81.843 369 32 16 1400 1767 47023785 47024119 1.430000e-70 278.0
13 TraesCS2B01G189300 chr6D 84.884 86 12 1 1987 2071 47024148 47024233 9.270000e-13 86.1
14 TraesCS2B01G189300 chr3D 80.749 374 37 16 1395 1767 488862700 488862361 5.160000e-65 259.0
15 TraesCS2B01G189300 chr3D 87.209 86 10 1 1987 2071 488862332 488862247 4.280000e-16 97.1
16 TraesCS2B01G189300 chr5B 79.412 374 37 17 1395 1767 468652140 468652474 1.460000e-55 228.0
17 TraesCS2B01G189300 chr5B 87.209 86 10 1 1987 2071 468652503 468652588 4.280000e-16 97.1
18 TraesCS2B01G189300 chr5B 75.000 208 38 10 4526 4726 41269303 41269503 3.330000e-12 84.2
19 TraesCS2B01G189300 chr5B 82.000 100 17 1 62 160 415809064 415809163 3.330000e-12 84.2
20 TraesCS2B01G189300 chr5B 82.418 91 6 7 4528 4615 5051058 5051141 2.600000e-08 71.3
21 TraesCS2B01G189300 chr3A 81.517 211 27 12 61 264 66178031 66177826 4.160000e-36 163.0
22 TraesCS2B01G189300 chr3A 80.769 130 16 6 4528 4655 517332507 517332629 5.540000e-15 93.5
23 TraesCS2B01G189300 chr6A 82.171 129 16 5 65 188 79945947 79946073 2.560000e-18 104.0
24 TraesCS2B01G189300 chr3B 84.615 91 10 4 185 271 567170204 567170114 2.580000e-13 87.9
25 TraesCS2B01G189300 chr3B 76.866 134 22 7 65 191 540686426 540686295 3.360000e-07 67.6
26 TraesCS2B01G189300 chr1D 82.692 104 13 4 4528 4629 35998137 35998037 2.580000e-13 87.9
27 TraesCS2B01G189300 chr1D 82.609 92 10 5 4528 4619 173045852 173045767 5.580000e-10 76.8
28 TraesCS2B01G189300 chrUn 73.840 237 47 6 43 264 53926209 53926445 4.310000e-11 80.5
29 TraesCS2B01G189300 chr1A 84.524 84 9 3 4532 4614 314435528 314435448 4.310000e-11 80.5
30 TraesCS2B01G189300 chr5D 78.992 119 22 3 43 160 352843204 352843320 1.550000e-10 78.7
31 TraesCS2B01G189300 chr4B 77.483 151 20 11 62 202 2466869 2467015 1.550000e-10 78.7
32 TraesCS2B01G189300 chr4B 94.595 37 2 0 275 311 282881442 282881406 2.020000e-04 58.4
33 TraesCS2B01G189300 chr4D 80.000 90 14 4 4526 4614 328139229 328139315 4.340000e-06 63.9
34 TraesCS2B01G189300 chr6B 83.333 60 7 2 4587 4644 350138549 350138491 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G189300 chr2B 164935804 164940999 5195 False 9596.000000 9596 100.000 1 5196 1 chr2B.!!$F1 5195
1 TraesCS2B01G189300 chr2A 115752389 115757065 4676 False 2256.366667 6416 89.906 383 4985 3 chr2A.!!$F1 4602
2 TraesCS2B01G189300 chr2D 114531337 114536534 5197 False 2180.333333 5703 92.072 383 5180 3 chr2D.!!$F2 4797
3 TraesCS2B01G189300 chr7A 603588580 603589217 637 False 527.000000 527 81.720 1408 2054 1 chr7A.!!$F1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 220 0.107897 ACGGATGCCATTTCGTGCTA 60.108 50.0 6.29 0.00 34.40 3.49 F
945 992 0.179084 CTACCGACGGTACCGACCTA 60.179 60.0 39.52 21.37 44.46 3.08 F
2487 2854 0.176219 CAATCGCCCATGCAATTGGT 59.824 50.0 7.72 0.00 38.07 3.67 F
3714 4085 0.312102 GGTTGCTCTTGCTGTTCCAC 59.688 55.0 0.00 0.00 40.48 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1978 2343 0.458716 GACAGGGACTACGCAAGCTC 60.459 60.000 0.0 0.0 37.54 4.09 R
2879 3250 1.898574 CACCCTGTGTGCCAACTCC 60.899 63.158 0.0 0.0 38.34 3.85 R
3994 4366 0.678950 TGCACTCGGTCACATTCTGA 59.321 50.000 0.0 0.0 0.00 3.27 R
5031 5520 0.251297 CAGAGGATTTGGGGCACACA 60.251 55.000 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.752766 ATGATGAAATGACATTTGTTGAAGTC 57.247 30.769 18.00 2.06 31.47 3.01
36 37 6.130298 TGAAATGACATTTGTTGAAGTCGT 57.870 33.333 18.00 0.00 33.83 4.34
37 38 5.970612 TGAAATGACATTTGTTGAAGTCGTG 59.029 36.000 18.00 0.00 33.83 4.35
38 39 3.332761 TGACATTTGTTGAAGTCGTGC 57.667 42.857 0.00 0.00 33.83 5.34
39 40 2.680339 TGACATTTGTTGAAGTCGTGCA 59.320 40.909 0.00 0.00 33.83 4.57
40 41 3.127721 TGACATTTGTTGAAGTCGTGCAA 59.872 39.130 0.00 0.00 33.83 4.08
42 43 4.489810 ACATTTGTTGAAGTCGTGCAAAA 58.510 34.783 0.00 0.00 33.60 2.44
43 44 4.926238 ACATTTGTTGAAGTCGTGCAAAAA 59.074 33.333 0.00 0.00 33.60 1.94
84 85 7.066374 TGGTAAACTTTGACAAATGTTTTGC 57.934 32.000 22.17 15.44 41.39 3.68
85 86 6.181944 GGTAAACTTTGACAAATGTTTTGCG 58.818 36.000 22.17 6.10 41.39 4.85
86 87 5.854431 AAACTTTGACAAATGTTTTGCGT 57.146 30.435 16.25 2.47 39.38 5.24
87 88 4.838665 ACTTTGACAAATGTTTTGCGTG 57.161 36.364 0.05 0.00 0.00 5.34
88 89 3.061965 ACTTTGACAAATGTTTTGCGTGC 59.938 39.130 0.05 0.00 0.00 5.34
89 90 2.575694 TGACAAATGTTTTGCGTGCT 57.424 40.000 0.06 0.00 0.00 4.40
90 91 2.886081 TGACAAATGTTTTGCGTGCTT 58.114 38.095 0.06 0.00 0.00 3.91
91 92 2.602211 TGACAAATGTTTTGCGTGCTTG 59.398 40.909 0.06 0.00 0.00 4.01
92 93 1.327156 ACAAATGTTTTGCGTGCTTGC 59.673 42.857 0.06 0.00 0.00 4.01
93 94 1.326852 CAAATGTTTTGCGTGCTTGCA 59.673 42.857 0.00 0.00 44.61 4.08
156 157 2.549064 AACCCTTGCTCCAAAAATGC 57.451 45.000 0.00 0.00 0.00 3.56
157 158 1.720781 ACCCTTGCTCCAAAAATGCT 58.279 45.000 0.00 0.00 0.00 3.79
158 159 2.888212 ACCCTTGCTCCAAAAATGCTA 58.112 42.857 0.00 0.00 0.00 3.49
159 160 3.444029 ACCCTTGCTCCAAAAATGCTAT 58.556 40.909 0.00 0.00 0.00 2.97
160 161 3.840078 ACCCTTGCTCCAAAAATGCTATT 59.160 39.130 0.00 0.00 0.00 1.73
161 162 4.286808 ACCCTTGCTCCAAAAATGCTATTT 59.713 37.500 0.00 0.00 0.00 1.40
162 163 5.221904 ACCCTTGCTCCAAAAATGCTATTTT 60.222 36.000 0.00 0.00 32.89 1.82
163 164 5.706833 CCCTTGCTCCAAAAATGCTATTTTT 59.293 36.000 11.43 11.43 30.31 1.94
164 165 6.348704 CCCTTGCTCCAAAAATGCTATTTTTG 60.349 38.462 24.72 24.72 44.56 2.44
165 166 6.427547 CCTTGCTCCAAAAATGCTATTTTTGA 59.572 34.615 28.95 20.30 46.62 2.69
166 167 7.041235 CCTTGCTCCAAAAATGCTATTTTTGAA 60.041 33.333 28.95 18.78 46.62 2.69
167 168 7.798596 TGCTCCAAAAATGCTATTTTTGAAA 57.201 28.000 28.95 21.13 46.62 2.69
168 169 7.863666 TGCTCCAAAAATGCTATTTTTGAAAG 58.136 30.769 28.95 25.76 46.62 2.62
169 170 6.798476 GCTCCAAAAATGCTATTTTTGAAAGC 59.202 34.615 28.95 28.51 46.62 3.51
177 178 5.055812 TGCTATTTTTGAAAGCACTTTGGG 58.944 37.500 0.00 0.00 41.15 4.12
178 179 4.452114 GCTATTTTTGAAAGCACTTTGGGG 59.548 41.667 0.00 0.00 36.26 4.96
179 180 3.990959 TTTTTGAAAGCACTTTGGGGT 57.009 38.095 0.00 0.00 32.11 4.95
180 181 2.977772 TTTGAAAGCACTTTGGGGTG 57.022 45.000 0.00 0.00 39.91 4.61
207 208 4.695217 TTTTAATGACTTCCACGGATGC 57.305 40.909 0.00 0.00 0.00 3.91
208 209 2.325583 TAATGACTTCCACGGATGCC 57.674 50.000 0.00 0.00 0.00 4.40
209 210 0.327924 AATGACTTCCACGGATGCCA 59.672 50.000 0.00 0.00 0.00 4.92
210 211 0.548031 ATGACTTCCACGGATGCCAT 59.452 50.000 0.00 0.00 0.00 4.40
211 212 0.327924 TGACTTCCACGGATGCCATT 59.672 50.000 0.00 0.00 0.00 3.16
212 213 1.271871 TGACTTCCACGGATGCCATTT 60.272 47.619 0.00 0.00 0.00 2.32
213 214 1.401905 GACTTCCACGGATGCCATTTC 59.598 52.381 0.00 0.00 0.00 2.17
214 215 0.378257 CTTCCACGGATGCCATTTCG 59.622 55.000 0.00 0.87 0.00 3.46
215 216 0.322098 TTCCACGGATGCCATTTCGT 60.322 50.000 2.00 2.00 36.19 3.85
217 218 1.226379 CACGGATGCCATTTCGTGC 60.226 57.895 17.07 0.00 44.56 5.34
218 219 1.377202 ACGGATGCCATTTCGTGCT 60.377 52.632 6.29 0.00 34.40 4.40
219 220 0.107897 ACGGATGCCATTTCGTGCTA 60.108 50.000 6.29 0.00 34.40 3.49
220 221 1.013596 CGGATGCCATTTCGTGCTAA 58.986 50.000 0.00 0.00 0.00 3.09
221 222 1.400142 CGGATGCCATTTCGTGCTAAA 59.600 47.619 0.00 0.00 0.00 1.85
222 223 2.159448 CGGATGCCATTTCGTGCTAAAA 60.159 45.455 0.00 0.00 0.00 1.52
223 224 3.489059 CGGATGCCATTTCGTGCTAAAAT 60.489 43.478 0.00 0.00 0.00 1.82
224 225 4.432712 GGATGCCATTTCGTGCTAAAATT 58.567 39.130 0.00 0.00 0.00 1.82
225 226 4.268405 GGATGCCATTTCGTGCTAAAATTG 59.732 41.667 0.00 0.00 0.00 2.32
226 227 3.583806 TGCCATTTCGTGCTAAAATTGG 58.416 40.909 0.00 0.00 0.00 3.16
227 228 3.006323 TGCCATTTCGTGCTAAAATTGGT 59.994 39.130 0.00 0.00 0.00 3.67
228 229 3.993736 GCCATTTCGTGCTAAAATTGGTT 59.006 39.130 0.00 0.00 0.00 3.67
229 230 5.164954 GCCATTTCGTGCTAAAATTGGTTA 58.835 37.500 0.00 0.00 0.00 2.85
230 231 5.635700 GCCATTTCGTGCTAAAATTGGTTAA 59.364 36.000 0.00 0.00 0.00 2.01
231 232 6.183360 GCCATTTCGTGCTAAAATTGGTTAAG 60.183 38.462 0.00 0.00 0.00 1.85
232 233 6.183360 CCATTTCGTGCTAAAATTGGTTAAGC 60.183 38.462 0.00 0.00 0.00 3.09
233 234 5.440234 TTCGTGCTAAAATTGGTTAAGCA 57.560 34.783 2.54 2.54 0.00 3.91
234 235 4.789784 TCGTGCTAAAATTGGTTAAGCAC 58.210 39.130 6.90 14.14 45.06 4.40
236 237 5.822584 GTGCTAAAATTGGTTAAGCACAC 57.177 39.130 18.07 6.70 46.92 3.82
237 238 5.285651 GTGCTAAAATTGGTTAAGCACACA 58.714 37.500 18.07 0.00 46.92 3.72
238 239 5.751028 GTGCTAAAATTGGTTAAGCACACAA 59.249 36.000 18.07 0.00 46.92 3.33
239 240 6.256757 GTGCTAAAATTGGTTAAGCACACAAA 59.743 34.615 18.07 0.00 46.92 2.83
240 241 6.818644 TGCTAAAATTGGTTAAGCACACAAAA 59.181 30.769 6.90 0.00 0.00 2.44
241 242 7.123190 GCTAAAATTGGTTAAGCACACAAAAC 58.877 34.615 6.90 0.00 0.00 2.43
242 243 7.201565 GCTAAAATTGGTTAAGCACACAAAACA 60.202 33.333 6.90 0.00 0.00 2.83
243 244 7.622893 AAAATTGGTTAAGCACACAAAACAT 57.377 28.000 6.90 0.00 0.00 2.71
244 245 7.622893 AAATTGGTTAAGCACACAAAACATT 57.377 28.000 6.90 0.00 0.00 2.71
245 246 7.622893 AATTGGTTAAGCACACAAAACATTT 57.377 28.000 6.90 0.00 0.00 2.32
246 247 6.414408 TTGGTTAAGCACACAAAACATTTG 57.586 33.333 6.90 1.47 0.00 2.32
247 248 5.482908 TGGTTAAGCACACAAAACATTTGT 58.517 33.333 2.54 2.76 0.00 2.83
248 249 5.578727 TGGTTAAGCACACAAAACATTTGTC 59.421 36.000 2.54 0.00 0.00 3.18
249 250 5.578727 GGTTAAGCACACAAAACATTTGTCA 59.421 36.000 5.54 0.00 0.00 3.58
250 251 6.091441 GGTTAAGCACACAAAACATTTGTCAA 59.909 34.615 5.54 0.00 0.00 3.18
251 252 7.360438 GGTTAAGCACACAAAACATTTGTCAAA 60.360 33.333 5.54 0.00 0.00 2.69
252 253 5.783100 AGCACACAAAACATTTGTCAAAG 57.217 34.783 5.54 0.00 0.00 2.77
253 254 5.237048 AGCACACAAAACATTTGTCAAAGT 58.763 33.333 5.54 0.09 0.00 2.66
254 255 5.700373 AGCACACAAAACATTTGTCAAAGTT 59.300 32.000 5.54 5.89 0.00 2.66
255 256 5.789512 GCACACAAAACATTTGTCAAAGTTG 59.210 36.000 5.54 7.86 0.00 3.16
256 257 5.789512 CACACAAAACATTTGTCAAAGTTGC 59.210 36.000 5.54 0.00 0.00 4.17
257 258 5.106752 ACACAAAACATTTGTCAAAGTTGCC 60.107 36.000 5.54 0.00 0.00 4.52
258 259 4.999950 ACAAAACATTTGTCAAAGTTGCCA 59.000 33.333 4.03 0.00 0.00 4.92
259 260 5.106752 ACAAAACATTTGTCAAAGTTGCCAC 60.107 36.000 4.03 0.00 0.00 5.01
260 261 3.883830 ACATTTGTCAAAGTTGCCACA 57.116 38.095 4.03 0.00 0.00 4.17
261 262 4.199432 ACATTTGTCAAAGTTGCCACAA 57.801 36.364 4.03 0.00 0.00 3.33
262 263 4.573900 ACATTTGTCAAAGTTGCCACAAA 58.426 34.783 11.29 11.29 38.44 2.83
263 264 4.999950 ACATTTGTCAAAGTTGCCACAAAA 59.000 33.333 12.36 1.66 37.96 2.44
264 265 5.647225 ACATTTGTCAAAGTTGCCACAAAAT 59.353 32.000 12.36 4.85 37.96 1.82
265 266 6.150809 ACATTTGTCAAAGTTGCCACAAAATT 59.849 30.769 12.36 3.73 37.96 1.82
266 267 5.793026 TTGTCAAAGTTGCCACAAAATTC 57.207 34.783 0.00 0.00 0.00 2.17
267 268 5.083533 TGTCAAAGTTGCCACAAAATTCT 57.916 34.783 0.00 0.00 0.00 2.40
268 269 5.486526 TGTCAAAGTTGCCACAAAATTCTT 58.513 33.333 0.00 0.00 0.00 2.52
269 270 5.936956 TGTCAAAGTTGCCACAAAATTCTTT 59.063 32.000 0.00 0.00 0.00 2.52
270 271 6.429385 TGTCAAAGTTGCCACAAAATTCTTTT 59.571 30.769 0.00 0.00 0.00 2.27
271 272 7.604164 TGTCAAAGTTGCCACAAAATTCTTTTA 59.396 29.630 0.00 0.00 0.00 1.52
272 273 8.116136 GTCAAAGTTGCCACAAAATTCTTTTAG 58.884 33.333 0.00 0.00 0.00 1.85
273 274 7.821846 TCAAAGTTGCCACAAAATTCTTTTAGT 59.178 29.630 0.00 0.00 0.00 2.24
274 275 8.450180 CAAAGTTGCCACAAAATTCTTTTAGTT 58.550 29.630 0.00 0.00 0.00 2.24
275 276 7.770801 AGTTGCCACAAAATTCTTTTAGTTC 57.229 32.000 0.00 0.00 0.00 3.01
276 277 7.327214 AGTTGCCACAAAATTCTTTTAGTTCA 58.673 30.769 0.00 0.00 0.00 3.18
277 278 7.277760 AGTTGCCACAAAATTCTTTTAGTTCAC 59.722 33.333 0.00 0.00 0.00 3.18
278 279 6.872920 TGCCACAAAATTCTTTTAGTTCACT 58.127 32.000 0.00 0.00 0.00 3.41
279 280 7.327214 TGCCACAAAATTCTTTTAGTTCACTT 58.673 30.769 0.00 0.00 0.00 3.16
280 281 7.277539 TGCCACAAAATTCTTTTAGTTCACTTG 59.722 33.333 0.00 0.00 0.00 3.16
281 282 7.491048 GCCACAAAATTCTTTTAGTTCACTTGA 59.509 33.333 0.00 0.00 0.00 3.02
282 283 9.023967 CCACAAAATTCTTTTAGTTCACTTGAG 57.976 33.333 0.00 0.00 0.00 3.02
283 284 8.534778 CACAAAATTCTTTTAGTTCACTTGAGC 58.465 33.333 0.00 0.00 0.00 4.26
284 285 8.470002 ACAAAATTCTTTTAGTTCACTTGAGCT 58.530 29.630 1.01 1.01 39.05 4.09
285 286 8.962111 CAAAATTCTTTTAGTTCACTTGAGCTC 58.038 33.333 6.82 6.82 36.91 4.09
286 287 5.907197 TTCTTTTAGTTCACTTGAGCTCG 57.093 39.130 9.64 0.00 36.91 5.03
287 288 4.307432 TCTTTTAGTTCACTTGAGCTCGG 58.693 43.478 9.64 7.10 36.91 4.63
288 289 2.743636 TTAGTTCACTTGAGCTCGGG 57.256 50.000 9.64 6.72 36.91 5.14
289 290 1.919240 TAGTTCACTTGAGCTCGGGA 58.081 50.000 9.64 0.00 36.91 5.14
290 291 0.605589 AGTTCACTTGAGCTCGGGAG 59.394 55.000 9.64 9.44 29.21 4.30
291 292 0.318762 GTTCACTTGAGCTCGGGAGT 59.681 55.000 9.64 10.09 0.00 3.85
292 293 1.544691 GTTCACTTGAGCTCGGGAGTA 59.455 52.381 9.64 0.00 0.00 2.59
293 294 1.464734 TCACTTGAGCTCGGGAGTAG 58.535 55.000 9.64 8.09 0.00 2.57
294 295 1.004394 TCACTTGAGCTCGGGAGTAGA 59.996 52.381 9.64 9.94 0.00 2.59
295 296 1.819288 CACTTGAGCTCGGGAGTAGAA 59.181 52.381 9.64 0.00 0.00 2.10
296 297 2.096248 ACTTGAGCTCGGGAGTAGAAG 58.904 52.381 9.64 6.91 0.00 2.85
297 298 2.291024 ACTTGAGCTCGGGAGTAGAAGA 60.291 50.000 9.64 0.00 0.00 2.87
298 299 2.045561 TGAGCTCGGGAGTAGAAGAG 57.954 55.000 9.64 0.00 0.00 2.85
299 300 1.314730 GAGCTCGGGAGTAGAAGAGG 58.685 60.000 0.00 0.00 0.00 3.69
300 301 0.920438 AGCTCGGGAGTAGAAGAGGA 59.080 55.000 0.00 0.00 0.00 3.71
301 302 1.026584 GCTCGGGAGTAGAAGAGGAC 58.973 60.000 0.00 0.00 0.00 3.85
302 303 1.409101 GCTCGGGAGTAGAAGAGGACT 60.409 57.143 0.00 0.00 0.00 3.85
303 304 2.946791 GCTCGGGAGTAGAAGAGGACTT 60.947 54.545 0.00 0.00 39.24 3.01
304 305 3.358118 CTCGGGAGTAGAAGAGGACTTT 58.642 50.000 0.00 0.00 36.39 2.66
305 306 3.354467 TCGGGAGTAGAAGAGGACTTTC 58.646 50.000 0.00 0.00 36.39 2.62
306 307 2.097791 CGGGAGTAGAAGAGGACTTTCG 59.902 54.545 0.00 0.00 36.39 3.46
307 308 3.354467 GGGAGTAGAAGAGGACTTTCGA 58.646 50.000 0.00 0.00 36.39 3.71
308 309 3.955551 GGGAGTAGAAGAGGACTTTCGAT 59.044 47.826 0.00 0.00 36.39 3.59
309 310 4.037089 GGGAGTAGAAGAGGACTTTCGATC 59.963 50.000 0.00 0.00 36.39 3.69
310 311 4.037089 GGAGTAGAAGAGGACTTTCGATCC 59.963 50.000 0.00 0.00 36.39 3.36
311 312 4.601084 AGTAGAAGAGGACTTTCGATCCA 58.399 43.478 6.33 0.00 38.86 3.41
312 313 5.017490 AGTAGAAGAGGACTTTCGATCCAA 58.983 41.667 6.33 0.00 38.86 3.53
313 314 4.464069 AGAAGAGGACTTTCGATCCAAG 57.536 45.455 6.33 0.18 38.86 3.61
314 315 2.682155 AGAGGACTTTCGATCCAAGC 57.318 50.000 6.33 0.00 38.86 4.01
315 316 2.183679 AGAGGACTTTCGATCCAAGCT 58.816 47.619 6.33 0.00 38.86 3.74
316 317 2.569404 AGAGGACTTTCGATCCAAGCTT 59.431 45.455 6.33 0.00 38.86 3.74
317 318 3.769844 AGAGGACTTTCGATCCAAGCTTA 59.230 43.478 0.00 0.00 38.86 3.09
318 319 4.116238 GAGGACTTTCGATCCAAGCTTAG 58.884 47.826 0.00 0.00 38.86 2.18
319 320 3.515901 AGGACTTTCGATCCAAGCTTAGT 59.484 43.478 0.00 0.00 38.86 2.24
320 321 4.020128 AGGACTTTCGATCCAAGCTTAGTT 60.020 41.667 0.00 0.00 38.86 2.24
321 322 4.695928 GGACTTTCGATCCAAGCTTAGTTT 59.304 41.667 0.00 0.00 36.15 2.66
322 323 5.181433 GGACTTTCGATCCAAGCTTAGTTTT 59.819 40.000 0.00 0.00 36.15 2.43
323 324 6.370718 GGACTTTCGATCCAAGCTTAGTTTTA 59.629 38.462 0.00 0.00 36.15 1.52
324 325 7.130303 ACTTTCGATCCAAGCTTAGTTTTAC 57.870 36.000 0.00 0.00 0.00 2.01
325 326 5.773239 TTCGATCCAAGCTTAGTTTTACG 57.227 39.130 0.00 0.00 0.00 3.18
326 327 5.063180 TCGATCCAAGCTTAGTTTTACGA 57.937 39.130 0.00 2.10 0.00 3.43
327 328 5.100259 TCGATCCAAGCTTAGTTTTACGAG 58.900 41.667 0.00 0.00 0.00 4.18
328 329 5.100259 CGATCCAAGCTTAGTTTTACGAGA 58.900 41.667 0.00 0.00 0.00 4.04
329 330 5.230306 CGATCCAAGCTTAGTTTTACGAGAG 59.770 44.000 0.00 0.00 0.00 3.20
330 331 5.717078 TCCAAGCTTAGTTTTACGAGAGA 57.283 39.130 0.00 0.00 0.00 3.10
331 332 6.282199 TCCAAGCTTAGTTTTACGAGAGAT 57.718 37.500 0.00 0.00 0.00 2.75
332 333 6.331061 TCCAAGCTTAGTTTTACGAGAGATC 58.669 40.000 0.00 0.00 0.00 2.75
333 334 6.153000 TCCAAGCTTAGTTTTACGAGAGATCT 59.847 38.462 0.00 0.00 0.00 2.75
334 335 6.814146 CCAAGCTTAGTTTTACGAGAGATCTT 59.186 38.462 0.00 0.00 0.00 2.40
335 336 7.332182 CCAAGCTTAGTTTTACGAGAGATCTTT 59.668 37.037 0.00 0.00 0.00 2.52
336 337 9.355215 CAAGCTTAGTTTTACGAGAGATCTTTA 57.645 33.333 0.00 0.00 0.00 1.85
343 344 9.706691 AGTTTTACGAGAGATCTTTATTGTTCA 57.293 29.630 0.00 0.00 0.00 3.18
364 365 9.434275 TGTTCATCTATATTCTAGTTTCTCCCA 57.566 33.333 0.00 0.00 0.00 4.37
374 375 7.733773 TTCTAGTTTCTCCCATCTAACATGA 57.266 36.000 0.00 0.00 0.00 3.07
375 376 7.921041 TCTAGTTTCTCCCATCTAACATGAT 57.079 36.000 0.00 0.00 0.00 2.45
376 377 9.434275 TTCTAGTTTCTCCCATCTAACATGATA 57.566 33.333 0.00 0.00 0.00 2.15
377 378 8.861086 TCTAGTTTCTCCCATCTAACATGATAC 58.139 37.037 0.00 0.00 0.00 2.24
378 379 6.831976 AGTTTCTCCCATCTAACATGATACC 58.168 40.000 0.00 0.00 0.00 2.73
379 380 6.617371 AGTTTCTCCCATCTAACATGATACCT 59.383 38.462 0.00 0.00 0.00 3.08
380 381 6.672266 TTCTCCCATCTAACATGATACCTC 57.328 41.667 0.00 0.00 0.00 3.85
381 382 5.715921 TCTCCCATCTAACATGATACCTCA 58.284 41.667 0.00 0.00 35.41 3.86
418 419 1.487976 TGGCCTGTTGAAAAATTGGCA 59.512 42.857 3.32 0.00 38.77 4.92
440 442 8.689972 TGGCAATGATTAAAACAAAAACCAAAT 58.310 25.926 0.00 0.00 0.00 2.32
486 488 1.202639 GGGGTGGTTTTTGGCAAGAAG 60.203 52.381 3.10 0.00 0.00 2.85
578 584 3.160047 CCCAGCTGAGCCCGATCT 61.160 66.667 17.39 0.00 0.00 2.75
581 587 1.550327 CCAGCTGAGCCCGATCTATA 58.450 55.000 17.39 0.00 0.00 1.31
582 588 2.106566 CCAGCTGAGCCCGATCTATAT 58.893 52.381 17.39 0.00 0.00 0.86
719 731 2.228103 CCTTTCCACGTAAAAAGCCTCC 59.772 50.000 13.63 0.00 32.34 4.30
774 795 2.825264 CATCGCCTCCCCTTCTCC 59.175 66.667 0.00 0.00 0.00 3.71
817 843 1.905843 CGCCAACCACCAAATCCCA 60.906 57.895 0.00 0.00 0.00 4.37
819 845 1.826340 GCCAACCACCAAATCCCACC 61.826 60.000 0.00 0.00 0.00 4.61
830 866 3.848200 ATCCCACCCCACCAACCCT 62.848 63.158 0.00 0.00 0.00 4.34
833 875 3.979497 CACCCCACCAACCCTCCC 61.979 72.222 0.00 0.00 0.00 4.30
911 953 4.778415 CACACGACTCGCCCTCCG 62.778 72.222 0.00 0.00 38.61 4.63
934 981 4.143333 CAGCCCCACCTACCGACG 62.143 72.222 0.00 0.00 0.00 5.12
937 984 2.044053 CCCCACCTACCGACGGTA 60.044 66.667 24.65 24.65 37.09 4.02
939 986 2.418083 CCCACCTACCGACGGTACC 61.418 68.421 22.70 0.16 37.09 3.34
940 987 2.764314 CCACCTACCGACGGTACCG 61.764 68.421 32.22 32.22 46.03 4.02
941 988 1.745115 CACCTACCGACGGTACCGA 60.745 63.158 39.52 16.79 42.83 4.69
944 991 1.450312 CTACCGACGGTACCGACCT 60.450 63.158 39.52 18.97 44.46 3.85
945 992 0.179084 CTACCGACGGTACCGACCTA 60.179 60.000 39.52 21.37 44.46 3.08
946 993 0.461339 TACCGACGGTACCGACCTAC 60.461 60.000 39.52 21.48 44.46 3.18
947 994 2.472909 CCGACGGTACCGACCTACC 61.473 68.421 39.52 18.39 44.46 3.18
951 998 3.531207 GGTACCGACCTACCGCCC 61.531 72.222 0.00 0.00 43.16 6.13
952 999 3.892581 GTACCGACCTACCGCCCG 61.893 72.222 0.00 0.00 0.00 6.13
1540 1901 1.443194 CCCGTCGTCAAGGTACACG 60.443 63.158 0.00 0.00 37.36 4.49
1572 1933 8.925161 ATTATACACAAACCGAATTGAATTGG 57.075 30.769 0.00 0.13 34.38 3.16
1574 1935 4.870363 ACACAAACCGAATTGAATTGGAG 58.130 39.130 11.54 1.66 34.38 3.86
1586 1947 2.128035 GAATTGGAGCAGATACGTCCG 58.872 52.381 0.00 0.00 32.51 4.79
1626 1990 1.891811 GATCTGATCCGATCTGCTCCA 59.108 52.381 17.23 0.00 37.43 3.86
1664 2028 3.717294 GTGGGACGGATGGCTGGT 61.717 66.667 0.00 0.00 0.00 4.00
1959 2324 5.616488 ATGCCTTTGTCATTCAAATTTGC 57.384 34.783 13.54 0.00 43.78 3.68
1964 2329 6.652245 CCTTTGTCATTCAAATTTGCAGAAC 58.348 36.000 13.54 9.37 43.78 3.01
1977 2342 1.824230 TGCAGAACAACTTTTGGTGCT 59.176 42.857 9.94 0.00 41.86 4.40
1978 2343 2.195922 GCAGAACAACTTTTGGTGCTG 58.804 47.619 0.00 0.00 41.86 4.41
1985 2350 0.386838 ACTTTTGGTGCTGAGCTTGC 59.613 50.000 5.83 5.80 0.00 4.01
1992 2357 1.079819 TGCTGAGCTTGCGTAGTCC 60.080 57.895 5.83 0.00 0.00 3.85
2108 2475 9.722056 CCTATTCTAGTAAAAATGTTGTCATGC 57.278 33.333 0.00 0.00 34.19 4.06
2120 2487 6.594788 ATGTTGTCATGCCAGTAAAGATTT 57.405 33.333 0.00 0.00 32.51 2.17
2124 2491 4.168760 GTCATGCCAGTAAAGATTTGTGC 58.831 43.478 0.00 0.00 0.00 4.57
2129 2496 3.922240 GCCAGTAAAGATTTGTGCACATG 59.078 43.478 22.39 12.19 0.00 3.21
2238 2605 1.165907 TGGTTCTTCACTGCTTGCCG 61.166 55.000 0.00 0.00 0.00 5.69
2332 2699 9.613428 CCATATTAGAGTATGTGGAAACTTTCA 57.387 33.333 3.93 0.00 38.63 2.69
2487 2854 0.176219 CAATCGCCCATGCAATTGGT 59.824 50.000 7.72 0.00 38.07 3.67
2526 2893 5.068591 ACACCAGTAACCTTTGTTGGAATTC 59.931 40.000 0.00 0.00 35.87 2.17
2707 3074 7.065563 GGCATAATAAAAATGGCATGTTGTTGA 59.934 33.333 3.09 0.00 46.21 3.18
2860 3231 2.169832 TGGTCTAAGTGCTTCTGTGC 57.830 50.000 0.00 0.00 0.00 4.57
2879 3250 2.103432 TGCAATGGTGTATAGGTACCGG 59.897 50.000 6.18 0.00 39.87 5.28
2891 3262 1.670083 GTACCGGGAGTTGGCACAC 60.670 63.158 6.32 0.00 39.29 3.82
3035 3406 4.268687 CGTGAGGACTCCACAAGC 57.731 61.111 0.00 0.00 34.36 4.01
3083 3454 2.110213 GTGTGGGTTGGTGAGCGA 59.890 61.111 0.00 0.00 0.00 4.93
3260 3631 3.059352 ACTTGTGGAATGTAGGTGAGC 57.941 47.619 0.00 0.00 0.00 4.26
3529 3900 8.124808 AGTATCTTTCTATTCCGGATTCTACC 57.875 38.462 4.15 0.00 0.00 3.18
3567 3938 4.520111 TGTGGATGAAACTGAAACTCATGG 59.480 41.667 0.00 0.00 29.97 3.66
3584 3955 3.518705 TCATGGCATGGCAAAATAGGTTT 59.481 39.130 27.04 2.91 0.00 3.27
3690 4061 2.754186 GCCTATGGAAGTGGGCAATGAT 60.754 50.000 0.00 0.00 44.40 2.45
3714 4085 0.312102 GGTTGCTCTTGCTGTTCCAC 59.688 55.000 0.00 0.00 40.48 4.02
3726 4098 1.270550 CTGTTCCACCTGACATTTGCC 59.729 52.381 0.00 0.00 0.00 4.52
3749 4121 3.760151 TGTTGCTCTTTCTGCTGCATAAT 59.240 39.130 1.31 0.00 35.27 1.28
3763 4135 7.013274 TCTGCTGCATAATTCCCTACAAAATAC 59.987 37.037 1.31 0.00 0.00 1.89
3765 4137 7.013274 TGCTGCATAATTCCCTACAAAATACTC 59.987 37.037 0.00 0.00 0.00 2.59
3766 4138 7.522236 GCTGCATAATTCCCTACAAAATACTCC 60.522 40.741 0.00 0.00 0.00 3.85
3767 4139 6.485313 TGCATAATTCCCTACAAAATACTCCG 59.515 38.462 0.00 0.00 0.00 4.63
3768 4140 6.485648 GCATAATTCCCTACAAAATACTCCGT 59.514 38.462 0.00 0.00 0.00 4.69
3769 4141 7.658575 GCATAATTCCCTACAAAATACTCCGTA 59.341 37.037 0.00 0.00 0.00 4.02
3770 4142 9.720769 CATAATTCCCTACAAAATACTCCGTAT 57.279 33.333 0.00 0.00 0.00 3.06
3885 4257 8.528643 ACAAGTTTCTTTTGGCCTATATTTACC 58.471 33.333 3.32 0.00 0.00 2.85
3888 4260 4.139038 TCTTTTGGCCTATATTTACCGCC 58.861 43.478 3.32 0.00 40.16 6.13
3889 4261 3.868619 TTTGGCCTATATTTACCGCCT 57.131 42.857 3.32 0.00 40.40 5.52
3994 4366 3.814504 ATCCACCTTGAAATGACTGGT 57.185 42.857 0.00 0.00 0.00 4.00
4160 4532 1.407258 GGAGGATGAAGTCAGGACTCG 59.593 57.143 1.86 0.00 41.58 4.18
4325 4697 5.012251 TGTGCTTATGAGGTGTTGGTACTTA 59.988 40.000 0.00 0.00 0.00 2.24
4363 4735 0.953727 TAGCGTACTCGTGGTGTTGT 59.046 50.000 0.00 0.00 39.49 3.32
4364 4736 0.103572 AGCGTACTCGTGGTGTTGTT 59.896 50.000 0.00 0.00 39.49 2.83
4365 4737 0.231279 GCGTACTCGTGGTGTTGTTG 59.769 55.000 0.00 0.00 39.49 3.33
4425 4797 3.565482 TGATCTGTTTGAGCCTTTGTGAC 59.435 43.478 0.00 0.00 0.00 3.67
4427 4799 2.092429 TCTGTTTGAGCCTTTGTGACCT 60.092 45.455 0.00 0.00 0.00 3.85
4495 4867 8.937634 ATTTCTCATTGTTCCATCTATTTTGC 57.062 30.769 0.00 0.00 0.00 3.68
4791 5205 6.201226 TGCACACTTTTCTGTATCAAAACA 57.799 33.333 0.00 0.00 0.00 2.83
4840 5254 8.019656 AGTATGTGAGTTATTTCCGGTAGATT 57.980 34.615 0.00 0.00 0.00 2.40
4843 5257 5.055144 GTGAGTTATTTCCGGTAGATTCCC 58.945 45.833 0.00 0.00 0.00 3.97
4844 5258 4.966805 TGAGTTATTTCCGGTAGATTCCCT 59.033 41.667 0.00 0.00 0.00 4.20
4845 5259 5.070047 TGAGTTATTTCCGGTAGATTCCCTC 59.930 44.000 0.00 0.00 0.00 4.30
4867 5306 7.093377 CCCTCAATCAAATGGGAAATAGACAAA 60.093 37.037 0.00 0.00 42.11 2.83
4907 5346 1.621814 CTCACGGAGGAGGTAAAACCA 59.378 52.381 0.00 0.00 41.95 3.67
4908 5347 2.236395 CTCACGGAGGAGGTAAAACCAT 59.764 50.000 0.00 0.00 41.95 3.55
4909 5348 3.443052 TCACGGAGGAGGTAAAACCATA 58.557 45.455 0.00 0.00 41.95 2.74
4940 5379 8.088365 TCTTGCTCGTGTATATTGCTTATGTAT 58.912 33.333 0.00 0.00 0.00 2.29
5019 5508 4.070552 GTCGGTTGGAGGAGCGCT 62.071 66.667 11.27 11.27 40.11 5.92
5031 5520 1.668151 GAGCGCTGGTTTCCTCGTT 60.668 57.895 18.48 0.00 0.00 3.85
5077 5566 1.080498 TCTCTGGTTAGGTCCATGGGT 59.920 52.381 13.02 0.00 36.84 4.51
5098 5587 1.675641 GCACTACCACCCAAGGCAG 60.676 63.158 0.00 0.00 0.00 4.85
5135 5624 1.278238 CCTGATTCGTGTCGGCTTAC 58.722 55.000 0.00 0.00 0.00 2.34
5142 5631 0.522180 CGTGTCGGCTTACTCAGTCT 59.478 55.000 0.00 0.00 0.00 3.24
5146 5635 0.898326 TCGGCTTACTCAGTCTGGCA 60.898 55.000 0.00 0.00 0.00 4.92
5158 5647 4.122046 TCAGTCTGGCATTCGATATGTTG 58.878 43.478 0.00 2.20 0.00 3.33
5161 5650 5.065090 CAGTCTGGCATTCGATATGTTGAAA 59.935 40.000 0.00 0.00 31.64 2.69
5167 5656 4.733523 GCATTCGATATGTTGAAACACCCC 60.734 45.833 0.00 0.00 42.51 4.95
5180 5669 3.420482 ACCCCTGGCCATAGCACC 61.420 66.667 5.51 0.00 42.56 5.01
5181 5670 4.569180 CCCCTGGCCATAGCACCG 62.569 72.222 5.51 0.00 42.56 4.94
5182 5671 3.797353 CCCTGGCCATAGCACCGT 61.797 66.667 5.51 0.00 42.56 4.83
5183 5672 2.439960 CCCTGGCCATAGCACCGTA 61.440 63.158 5.51 0.00 42.56 4.02
5184 5673 1.524961 CCTGGCCATAGCACCGTAA 59.475 57.895 5.51 0.00 42.56 3.18
5185 5674 0.108585 CCTGGCCATAGCACCGTAAT 59.891 55.000 5.51 0.00 42.56 1.89
5186 5675 1.229428 CTGGCCATAGCACCGTAATG 58.771 55.000 5.51 0.00 42.56 1.90
5187 5676 0.817634 TGGCCATAGCACCGTAATGC 60.818 55.000 0.00 0.00 46.50 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.844790 GACTTCAACAAATGTCATTTCATCATA 57.155 29.630 7.87 0.00 0.00 2.15
10 11 6.857451 CGACTTCAACAAATGTCATTTCATCA 59.143 34.615 7.87 0.00 0.00 3.07
12 13 6.638063 CACGACTTCAACAAATGTCATTTCAT 59.362 34.615 7.87 0.00 0.00 2.57
13 14 5.970612 CACGACTTCAACAAATGTCATTTCA 59.029 36.000 7.87 0.00 0.00 2.69
14 15 5.108254 GCACGACTTCAACAAATGTCATTTC 60.108 40.000 7.87 0.00 0.00 2.17
15 16 4.739716 GCACGACTTCAACAAATGTCATTT 59.260 37.500 4.91 4.91 0.00 2.32
16 17 4.202000 TGCACGACTTCAACAAATGTCATT 60.202 37.500 0.00 0.00 0.00 2.57
17 18 3.314913 TGCACGACTTCAACAAATGTCAT 59.685 39.130 0.00 0.00 0.00 3.06
18 19 2.680339 TGCACGACTTCAACAAATGTCA 59.320 40.909 0.00 0.00 0.00 3.58
19 20 3.332761 TGCACGACTTCAACAAATGTC 57.667 42.857 0.00 0.00 0.00 3.06
20 21 3.773860 TTGCACGACTTCAACAAATGT 57.226 38.095 0.00 0.00 0.00 2.71
21 22 5.447478 TTTTTGCACGACTTCAACAAATG 57.553 34.783 0.00 0.00 30.95 2.32
58 59 8.821894 GCAAAACATTTGTCAAAGTTTACCATA 58.178 29.630 18.15 0.00 33.45 2.74
59 60 7.465245 CGCAAAACATTTGTCAAAGTTTACCAT 60.465 33.333 18.15 7.38 33.45 3.55
61 62 6.181944 CGCAAAACATTTGTCAAAGTTTACC 58.818 36.000 18.15 13.56 33.45 2.85
62 63 6.676578 CACGCAAAACATTTGTCAAAGTTTAC 59.323 34.615 18.15 14.46 33.45 2.01
63 64 6.670927 GCACGCAAAACATTTGTCAAAGTTTA 60.671 34.615 18.15 0.00 33.45 2.01
65 66 4.435386 GCACGCAAAACATTTGTCAAAGTT 60.435 37.500 4.03 5.89 0.00 2.66
66 67 3.061965 GCACGCAAAACATTTGTCAAAGT 59.938 39.130 4.03 0.09 0.00 2.66
67 68 3.306703 AGCACGCAAAACATTTGTCAAAG 59.693 39.130 4.03 0.00 0.00 2.77
69 70 2.886081 AGCACGCAAAACATTTGTCAA 58.114 38.095 4.90 0.00 0.00 3.18
70 71 2.575694 AGCACGCAAAACATTTGTCA 57.424 40.000 4.90 0.00 0.00 3.58
71 72 2.597272 GCAAGCACGCAAAACATTTGTC 60.597 45.455 4.90 0.00 0.00 3.18
72 73 1.327156 GCAAGCACGCAAAACATTTGT 59.673 42.857 4.90 0.00 0.00 2.83
73 74 1.326852 TGCAAGCACGCAAAACATTTG 59.673 42.857 0.00 0.00 39.45 2.32
74 75 1.649664 TGCAAGCACGCAAAACATTT 58.350 40.000 0.00 0.00 39.45 2.32
134 135 3.631686 GCATTTTTGGAGCAAGGGTTTTT 59.368 39.130 0.00 0.00 0.00 1.94
135 136 3.117926 AGCATTTTTGGAGCAAGGGTTTT 60.118 39.130 0.00 0.00 0.00 2.43
136 137 2.439135 AGCATTTTTGGAGCAAGGGTTT 59.561 40.909 0.00 0.00 0.00 3.27
137 138 2.049372 AGCATTTTTGGAGCAAGGGTT 58.951 42.857 0.00 0.00 0.00 4.11
138 139 1.720781 AGCATTTTTGGAGCAAGGGT 58.279 45.000 0.00 0.00 0.00 4.34
139 140 4.476628 AATAGCATTTTTGGAGCAAGGG 57.523 40.909 0.00 0.00 0.00 3.95
140 141 6.427547 TCAAAAATAGCATTTTTGGAGCAAGG 59.572 34.615 27.67 13.37 44.86 3.61
141 142 7.424227 TCAAAAATAGCATTTTTGGAGCAAG 57.576 32.000 27.67 13.81 44.86 4.01
142 143 7.798596 TTCAAAAATAGCATTTTTGGAGCAA 57.201 28.000 27.67 19.33 44.86 3.91
143 144 7.520292 GCTTTCAAAAATAGCATTTTTGGAGCA 60.520 33.333 31.59 20.60 45.21 4.26
144 145 6.798476 GCTTTCAAAAATAGCATTTTTGGAGC 59.202 34.615 28.59 28.59 44.86 4.70
145 146 7.799914 GTGCTTTCAAAAATAGCATTTTTGGAG 59.200 33.333 27.67 25.49 45.61 3.86
146 147 7.498570 AGTGCTTTCAAAAATAGCATTTTTGGA 59.501 29.630 27.67 22.83 45.61 3.53
147 148 7.641760 AGTGCTTTCAAAAATAGCATTTTTGG 58.358 30.769 27.67 19.87 45.61 3.28
148 149 9.505995 AAAGTGCTTTCAAAAATAGCATTTTTG 57.494 25.926 25.21 25.21 46.10 2.44
149 150 9.505995 CAAAGTGCTTTCAAAAATAGCATTTTT 57.494 25.926 12.19 11.43 46.10 1.94
151 152 7.255208 CCCAAAGTGCTTTCAAAAATAGCATTT 60.255 33.333 0.00 0.00 45.61 2.32
152 153 6.205270 CCCAAAGTGCTTTCAAAAATAGCATT 59.795 34.615 0.00 0.00 45.61 3.56
153 154 5.702209 CCCAAAGTGCTTTCAAAAATAGCAT 59.298 36.000 0.00 0.00 45.61 3.79
154 155 5.055812 CCCAAAGTGCTTTCAAAAATAGCA 58.944 37.500 0.00 0.00 42.22 3.49
155 156 4.452114 CCCCAAAGTGCTTTCAAAAATAGC 59.548 41.667 0.00 0.00 35.50 2.97
156 157 5.466393 CACCCCAAAGTGCTTTCAAAAATAG 59.534 40.000 0.00 0.00 0.00 1.73
157 158 5.363939 CACCCCAAAGTGCTTTCAAAAATA 58.636 37.500 0.00 0.00 0.00 1.40
158 159 4.198530 CACCCCAAAGTGCTTTCAAAAAT 58.801 39.130 0.00 0.00 0.00 1.82
159 160 3.604582 CACCCCAAAGTGCTTTCAAAAA 58.395 40.909 0.00 0.00 0.00 1.94
160 161 3.258971 CACCCCAAAGTGCTTTCAAAA 57.741 42.857 0.00 0.00 0.00 2.44
161 162 2.977772 CACCCCAAAGTGCTTTCAAA 57.022 45.000 0.00 0.00 0.00 2.69
185 186 4.082463 GGCATCCGTGGAAGTCATTAAAAA 60.082 41.667 0.00 0.00 0.00 1.94
186 187 3.442273 GGCATCCGTGGAAGTCATTAAAA 59.558 43.478 0.00 0.00 0.00 1.52
187 188 3.013921 GGCATCCGTGGAAGTCATTAAA 58.986 45.455 0.00 0.00 0.00 1.52
188 189 2.026729 TGGCATCCGTGGAAGTCATTAA 60.027 45.455 0.00 0.00 0.00 1.40
189 190 1.557371 TGGCATCCGTGGAAGTCATTA 59.443 47.619 0.00 0.00 0.00 1.90
190 191 0.327924 TGGCATCCGTGGAAGTCATT 59.672 50.000 0.00 0.00 0.00 2.57
191 192 0.548031 ATGGCATCCGTGGAAGTCAT 59.452 50.000 5.45 5.45 34.01 3.06
192 193 0.327924 AATGGCATCCGTGGAAGTCA 59.672 50.000 0.00 0.43 32.02 3.41
193 194 1.401905 GAAATGGCATCCGTGGAAGTC 59.598 52.381 0.00 0.00 0.00 3.01
194 195 1.463674 GAAATGGCATCCGTGGAAGT 58.536 50.000 0.00 0.00 0.00 3.01
195 196 0.378257 CGAAATGGCATCCGTGGAAG 59.622 55.000 0.00 0.00 0.00 3.46
196 197 0.322098 ACGAAATGGCATCCGTGGAA 60.322 50.000 21.53 0.00 33.69 3.53
197 198 1.024046 CACGAAATGGCATCCGTGGA 61.024 55.000 30.75 0.00 45.79 4.02
198 199 1.429021 CACGAAATGGCATCCGTGG 59.571 57.895 30.75 19.75 45.79 4.94
200 201 0.107897 TAGCACGAAATGGCATCCGT 60.108 50.000 18.13 18.13 35.46 4.69
201 202 1.013596 TTAGCACGAAATGGCATCCG 58.986 50.000 17.04 17.04 0.00 4.18
202 203 3.502191 TTTTAGCACGAAATGGCATCC 57.498 42.857 0.00 0.00 0.00 3.51
203 204 4.268405 CCAATTTTAGCACGAAATGGCATC 59.732 41.667 0.00 0.00 0.00 3.91
204 205 4.183101 CCAATTTTAGCACGAAATGGCAT 58.817 39.130 0.00 0.00 0.00 4.40
205 206 3.006323 ACCAATTTTAGCACGAAATGGCA 59.994 39.130 0.00 0.00 0.00 4.92
206 207 3.584834 ACCAATTTTAGCACGAAATGGC 58.415 40.909 0.00 0.00 0.00 4.40
207 208 6.183360 GCTTAACCAATTTTAGCACGAAATGG 60.183 38.462 0.00 0.00 0.00 3.16
208 209 6.364706 TGCTTAACCAATTTTAGCACGAAATG 59.635 34.615 0.00 0.00 0.00 2.32
209 210 6.364976 GTGCTTAACCAATTTTAGCACGAAAT 59.635 34.615 11.14 0.00 40.98 2.17
210 211 5.688176 GTGCTTAACCAATTTTAGCACGAAA 59.312 36.000 11.14 0.00 40.98 3.46
211 212 5.216648 GTGCTTAACCAATTTTAGCACGAA 58.783 37.500 11.14 0.00 40.98 3.85
212 213 4.789784 GTGCTTAACCAATTTTAGCACGA 58.210 39.130 11.14 0.00 40.98 4.35
215 216 5.521906 TGTGTGCTTAACCAATTTTAGCA 57.478 34.783 0.00 0.00 0.00 3.49
216 217 6.836577 TTTGTGTGCTTAACCAATTTTAGC 57.163 33.333 0.00 0.00 0.00 3.09
217 218 8.190888 TGTTTTGTGTGCTTAACCAATTTTAG 57.809 30.769 0.00 0.00 0.00 1.85
218 219 8.723942 ATGTTTTGTGTGCTTAACCAATTTTA 57.276 26.923 0.00 0.00 0.00 1.52
219 220 7.622893 ATGTTTTGTGTGCTTAACCAATTTT 57.377 28.000 0.00 0.00 0.00 1.82
220 221 7.622893 AATGTTTTGTGTGCTTAACCAATTT 57.377 28.000 0.00 0.00 0.00 1.82
221 222 7.120432 ACAAATGTTTTGTGTGCTTAACCAATT 59.880 29.630 4.90 0.00 0.00 2.32
222 223 6.597280 ACAAATGTTTTGTGTGCTTAACCAAT 59.403 30.769 4.90 0.00 0.00 3.16
223 224 5.934625 ACAAATGTTTTGTGTGCTTAACCAA 59.065 32.000 4.90 0.00 0.00 3.67
224 225 5.482908 ACAAATGTTTTGTGTGCTTAACCA 58.517 33.333 4.90 0.00 0.00 3.67
225 226 5.578727 TGACAAATGTTTTGTGTGCTTAACC 59.421 36.000 10.13 0.00 31.96 2.85
226 227 6.639671 TGACAAATGTTTTGTGTGCTTAAC 57.360 33.333 10.13 0.00 31.96 2.01
227 228 7.386299 ACTTTGACAAATGTTTTGTGTGCTTAA 59.614 29.630 10.13 0.00 31.96 1.85
228 229 6.870965 ACTTTGACAAATGTTTTGTGTGCTTA 59.129 30.769 10.13 0.00 31.96 3.09
229 230 5.700373 ACTTTGACAAATGTTTTGTGTGCTT 59.300 32.000 10.13 0.00 31.96 3.91
230 231 5.237048 ACTTTGACAAATGTTTTGTGTGCT 58.763 33.333 10.13 0.00 31.96 4.40
231 232 5.529014 ACTTTGACAAATGTTTTGTGTGC 57.471 34.783 10.13 0.00 31.96 4.57
232 233 5.789512 GCAACTTTGACAAATGTTTTGTGTG 59.210 36.000 10.13 1.53 32.85 3.82
233 234 5.106752 GGCAACTTTGACAAATGTTTTGTGT 60.107 36.000 10.13 0.17 35.83 3.72
234 235 5.106791 TGGCAACTTTGACAAATGTTTTGTG 60.107 36.000 10.13 0.00 44.72 3.33
235 236 4.999950 TGGCAACTTTGACAAATGTTTTGT 59.000 33.333 5.37 5.37 44.72 2.83
236 237 5.542616 TGGCAACTTTGACAAATGTTTTG 57.457 34.783 0.05 4.62 44.72 2.44
243 244 7.040823 AAAGAATTTTGTGGCAACTTTGACAAA 60.041 29.630 0.00 2.36 41.85 2.83
244 245 6.429385 AAAGAATTTTGTGGCAACTTTGACAA 59.571 30.769 0.00 0.00 41.85 3.18
245 246 5.083533 AGAATTTTGTGGCAACTTTGACA 57.916 34.783 0.00 0.00 45.70 3.58
246 247 6.421377 AAAGAATTTTGTGGCAACTTTGAC 57.579 33.333 0.00 0.00 31.62 3.18
261 262 7.355778 CGAGCTCAAGTGAACTAAAAGAATTT 58.644 34.615 15.40 0.00 42.41 1.82
262 263 6.073003 CCGAGCTCAAGTGAACTAAAAGAATT 60.073 38.462 15.40 0.00 0.00 2.17
263 264 5.409826 CCGAGCTCAAGTGAACTAAAAGAAT 59.590 40.000 15.40 0.00 0.00 2.40
264 265 4.750098 CCGAGCTCAAGTGAACTAAAAGAA 59.250 41.667 15.40 0.00 0.00 2.52
265 266 4.307432 CCGAGCTCAAGTGAACTAAAAGA 58.693 43.478 15.40 0.00 0.00 2.52
266 267 3.433615 CCCGAGCTCAAGTGAACTAAAAG 59.566 47.826 15.40 0.00 0.00 2.27
267 268 3.070446 TCCCGAGCTCAAGTGAACTAAAA 59.930 43.478 15.40 0.00 0.00 1.52
268 269 2.631062 TCCCGAGCTCAAGTGAACTAAA 59.369 45.455 15.40 0.00 0.00 1.85
269 270 2.231478 CTCCCGAGCTCAAGTGAACTAA 59.769 50.000 15.40 0.00 0.00 2.24
270 271 1.819288 CTCCCGAGCTCAAGTGAACTA 59.181 52.381 15.40 0.00 0.00 2.24
271 272 0.605589 CTCCCGAGCTCAAGTGAACT 59.394 55.000 15.40 0.00 0.00 3.01
272 273 0.318762 ACTCCCGAGCTCAAGTGAAC 59.681 55.000 15.40 0.00 0.00 3.18
273 274 1.819288 CTACTCCCGAGCTCAAGTGAA 59.181 52.381 15.40 0.00 0.00 3.18
274 275 1.004394 TCTACTCCCGAGCTCAAGTGA 59.996 52.381 15.40 10.53 0.00 3.41
275 276 1.464734 TCTACTCCCGAGCTCAAGTG 58.535 55.000 15.40 7.46 0.00 3.16
276 277 2.096248 CTTCTACTCCCGAGCTCAAGT 58.904 52.381 15.40 15.35 0.00 3.16
277 278 2.357637 CTCTTCTACTCCCGAGCTCAAG 59.642 54.545 15.40 10.16 0.00 3.02
278 279 2.370349 CTCTTCTACTCCCGAGCTCAA 58.630 52.381 15.40 0.00 0.00 3.02
279 280 1.408961 CCTCTTCTACTCCCGAGCTCA 60.409 57.143 15.40 0.00 0.00 4.26
280 281 1.134037 TCCTCTTCTACTCCCGAGCTC 60.134 57.143 2.73 2.73 0.00 4.09
281 282 0.920438 TCCTCTTCTACTCCCGAGCT 59.080 55.000 0.00 0.00 0.00 4.09
282 283 1.026584 GTCCTCTTCTACTCCCGAGC 58.973 60.000 0.00 0.00 0.00 5.03
283 284 2.721425 AGTCCTCTTCTACTCCCGAG 57.279 55.000 0.00 0.00 0.00 4.63
284 285 3.354467 GAAAGTCCTCTTCTACTCCCGA 58.646 50.000 0.00 0.00 32.90 5.14
285 286 2.097791 CGAAAGTCCTCTTCTACTCCCG 59.902 54.545 0.00 0.00 32.90 5.14
286 287 3.354467 TCGAAAGTCCTCTTCTACTCCC 58.646 50.000 0.00 0.00 32.90 4.30
287 288 4.037089 GGATCGAAAGTCCTCTTCTACTCC 59.963 50.000 0.00 0.00 32.90 3.85
288 289 4.641094 TGGATCGAAAGTCCTCTTCTACTC 59.359 45.833 5.20 0.00 36.68 2.59
289 290 4.601084 TGGATCGAAAGTCCTCTTCTACT 58.399 43.478 5.20 0.00 36.68 2.57
290 291 4.985538 TGGATCGAAAGTCCTCTTCTAC 57.014 45.455 5.20 0.00 36.68 2.59
291 292 4.142138 GCTTGGATCGAAAGTCCTCTTCTA 60.142 45.833 5.20 0.00 36.68 2.10
292 293 3.368948 GCTTGGATCGAAAGTCCTCTTCT 60.369 47.826 5.20 0.00 36.68 2.85
293 294 2.933260 GCTTGGATCGAAAGTCCTCTTC 59.067 50.000 5.20 0.00 36.68 2.87
294 295 2.569404 AGCTTGGATCGAAAGTCCTCTT 59.431 45.455 5.20 0.00 36.68 2.85
295 296 2.183679 AGCTTGGATCGAAAGTCCTCT 58.816 47.619 5.20 0.00 36.68 3.69
296 297 2.682155 AGCTTGGATCGAAAGTCCTC 57.318 50.000 5.20 0.00 36.68 3.71
297 298 3.515901 ACTAAGCTTGGATCGAAAGTCCT 59.484 43.478 17.63 0.00 36.68 3.85
298 299 3.863041 ACTAAGCTTGGATCGAAAGTCC 58.137 45.455 17.63 0.00 36.26 3.85
299 300 5.864628 AAACTAAGCTTGGATCGAAAGTC 57.135 39.130 17.63 0.00 0.00 3.01
300 301 6.128634 CGTAAAACTAAGCTTGGATCGAAAGT 60.129 38.462 17.63 2.42 0.00 2.66
301 302 6.090358 TCGTAAAACTAAGCTTGGATCGAAAG 59.910 38.462 17.63 1.72 0.00 2.62
302 303 5.927689 TCGTAAAACTAAGCTTGGATCGAAA 59.072 36.000 17.63 0.00 0.00 3.46
303 304 5.472148 TCGTAAAACTAAGCTTGGATCGAA 58.528 37.500 17.63 0.00 0.00 3.71
304 305 5.063180 TCGTAAAACTAAGCTTGGATCGA 57.937 39.130 17.63 14.02 0.00 3.59
305 306 5.100259 TCTCGTAAAACTAAGCTTGGATCG 58.900 41.667 17.63 12.20 0.00 3.69
306 307 6.331061 TCTCTCGTAAAACTAAGCTTGGATC 58.669 40.000 17.63 1.40 0.00 3.36
307 308 6.282199 TCTCTCGTAAAACTAAGCTTGGAT 57.718 37.500 17.63 0.92 0.00 3.41
308 309 5.717078 TCTCTCGTAAAACTAAGCTTGGA 57.283 39.130 17.63 0.00 0.00 3.53
309 310 6.334202 AGATCTCTCGTAAAACTAAGCTTGG 58.666 40.000 9.86 9.13 0.00 3.61
310 311 7.820044 AAGATCTCTCGTAAAACTAAGCTTG 57.180 36.000 9.86 1.57 0.00 4.01
317 318 9.706691 TGAACAATAAAGATCTCTCGTAAAACT 57.293 29.630 0.00 0.00 0.00 2.66
338 339 9.434275 TGGGAGAAACTAGAATATAGATGAACA 57.566 33.333 0.00 0.00 0.00 3.18
348 349 9.434275 TCATGTTAGATGGGAGAAACTAGAATA 57.566 33.333 0.00 0.00 0.00 1.75
349 350 8.324191 TCATGTTAGATGGGAGAAACTAGAAT 57.676 34.615 0.00 0.00 0.00 2.40
350 351 7.733773 TCATGTTAGATGGGAGAAACTAGAA 57.266 36.000 0.00 0.00 0.00 2.10
351 352 7.921041 ATCATGTTAGATGGGAGAAACTAGA 57.079 36.000 0.00 0.00 0.00 2.43
352 353 8.091449 GGTATCATGTTAGATGGGAGAAACTAG 58.909 40.741 0.00 0.00 0.00 2.57
353 354 7.789831 AGGTATCATGTTAGATGGGAGAAACTA 59.210 37.037 0.00 0.00 0.00 2.24
354 355 6.617371 AGGTATCATGTTAGATGGGAGAAACT 59.383 38.462 0.00 0.00 0.00 2.66
355 356 6.831976 AGGTATCATGTTAGATGGGAGAAAC 58.168 40.000 0.00 0.00 0.00 2.78
356 357 6.615316 TGAGGTATCATGTTAGATGGGAGAAA 59.385 38.462 0.00 0.00 0.00 2.52
357 358 6.042093 GTGAGGTATCATGTTAGATGGGAGAA 59.958 42.308 0.00 0.00 37.87 2.87
358 359 5.540337 GTGAGGTATCATGTTAGATGGGAGA 59.460 44.000 0.00 0.00 37.87 3.71
359 360 5.305386 TGTGAGGTATCATGTTAGATGGGAG 59.695 44.000 0.00 0.00 37.87 4.30
360 361 5.215845 TGTGAGGTATCATGTTAGATGGGA 58.784 41.667 0.00 0.00 37.87 4.37
361 362 5.551305 TGTGAGGTATCATGTTAGATGGG 57.449 43.478 0.00 0.00 37.87 4.00
362 363 6.820335 TCTTGTGAGGTATCATGTTAGATGG 58.180 40.000 0.00 0.00 37.87 3.51
363 364 8.722480 TTTCTTGTGAGGTATCATGTTAGATG 57.278 34.615 0.00 0.00 37.87 2.90
364 365 9.739276 TTTTTCTTGTGAGGTATCATGTTAGAT 57.261 29.630 0.00 0.00 37.87 1.98
365 366 9.739276 ATTTTTCTTGTGAGGTATCATGTTAGA 57.261 29.630 0.00 0.00 37.87 2.10
366 367 9.778993 CATTTTTCTTGTGAGGTATCATGTTAG 57.221 33.333 0.00 0.00 37.87 2.34
367 368 9.513906 TCATTTTTCTTGTGAGGTATCATGTTA 57.486 29.630 0.00 0.00 37.87 2.41
368 369 8.408043 TCATTTTTCTTGTGAGGTATCATGTT 57.592 30.769 0.00 0.00 37.87 2.71
369 370 7.362401 GCTCATTTTTCTTGTGAGGTATCATGT 60.362 37.037 4.06 0.00 39.71 3.21
370 371 6.971184 GCTCATTTTTCTTGTGAGGTATCATG 59.029 38.462 4.06 0.00 39.71 3.07
371 372 6.660521 TGCTCATTTTTCTTGTGAGGTATCAT 59.339 34.615 4.06 0.00 39.71 2.45
372 373 6.003326 TGCTCATTTTTCTTGTGAGGTATCA 58.997 36.000 4.06 0.00 39.71 2.15
373 374 6.500684 TGCTCATTTTTCTTGTGAGGTATC 57.499 37.500 4.06 0.00 39.71 2.24
374 375 7.318141 CAATGCTCATTTTTCTTGTGAGGTAT 58.682 34.615 4.06 0.00 39.71 2.73
375 376 6.294675 CCAATGCTCATTTTTCTTGTGAGGTA 60.295 38.462 4.06 0.00 39.71 3.08
376 377 5.510179 CCAATGCTCATTTTTCTTGTGAGGT 60.510 40.000 4.06 0.00 39.71 3.85
377 378 4.927425 CCAATGCTCATTTTTCTTGTGAGG 59.073 41.667 4.06 0.00 39.71 3.86
378 379 4.387862 GCCAATGCTCATTTTTCTTGTGAG 59.612 41.667 0.00 0.00 41.69 3.51
379 380 4.309099 GCCAATGCTCATTTTTCTTGTGA 58.691 39.130 0.00 0.00 33.53 3.58
380 381 3.434299 GGCCAATGCTCATTTTTCTTGTG 59.566 43.478 0.00 0.00 37.74 3.33
381 382 3.325716 AGGCCAATGCTCATTTTTCTTGT 59.674 39.130 5.01 0.00 37.74 3.16
524 526 0.312729 TACGCACGTATCCGCATGAT 59.687 50.000 0.00 0.00 37.70 2.45
573 579 3.675481 CGTTCAGCTCGGATATAGATCG 58.325 50.000 0.00 0.00 32.28 3.69
844 886 2.784889 TTTATATACCGGGCGGCCGC 62.785 60.000 41.83 41.63 39.32 6.53
911 953 4.033776 TAGGTGGGGCTGCTGTGC 62.034 66.667 0.00 0.00 0.00 4.57
913 955 3.330720 GGTAGGTGGGGCTGCTGT 61.331 66.667 0.00 0.00 0.00 4.40
935 982 3.892581 CGGGCGGTAGGTCGGTAC 61.893 72.222 0.00 0.00 0.00 3.34
936 983 4.108299 TCGGGCGGTAGGTCGGTA 62.108 66.667 0.00 0.00 0.00 4.02
1540 1901 3.805422 TCGGTTTGTGTATAATCATCGGC 59.195 43.478 0.00 0.00 0.00 5.54
1572 1933 1.654743 GCGACGGACGTATCTGCTC 60.655 63.158 0.00 0.00 44.60 4.26
1574 1935 1.654743 GAGCGACGGACGTATCTGC 60.655 63.158 0.00 0.20 44.60 4.26
1586 1947 4.668576 TCTCACAAATCAAATGAGCGAC 57.331 40.909 0.00 0.00 39.80 5.19
1626 1990 3.181448 ACCTACCGTGTGGAGAAAAACAT 60.181 43.478 0.00 0.00 39.21 2.71
1664 2028 2.032528 CTGGGCTTGGCGAACTGA 59.967 61.111 0.00 0.00 0.00 3.41
1820 2184 2.856032 CGGAGCAAGTTCAGCGTG 59.144 61.111 0.00 0.00 37.01 5.34
1959 2324 3.699067 CTCAGCACCAAAAGTTGTTCTG 58.301 45.455 0.00 0.00 0.00 3.02
1964 2329 2.466846 CAAGCTCAGCACCAAAAGTTG 58.533 47.619 0.00 0.00 0.00 3.16
1977 2342 1.185618 ACAGGGACTACGCAAGCTCA 61.186 55.000 0.00 0.00 37.54 4.26
1978 2343 0.458716 GACAGGGACTACGCAAGCTC 60.459 60.000 0.00 0.00 37.54 4.09
1985 2350 3.947910 TTTAACAGGACAGGGACTACG 57.052 47.619 0.00 0.00 36.02 3.51
1992 2357 5.183228 ACACCGATATTTTAACAGGACAGG 58.817 41.667 0.00 0.00 0.00 4.00
2099 2466 5.630680 CACAAATCTTTACTGGCATGACAAC 59.369 40.000 1.11 0.00 0.00 3.32
2108 2475 5.125100 ACATGTGCACAAATCTTTACTGG 57.875 39.130 25.72 4.34 0.00 4.00
2120 2487 3.198409 ACTCTCAAGAACATGTGCACA 57.802 42.857 24.08 24.08 0.00 4.57
2124 2491 6.162079 AGTGTCATACTCTCAAGAACATGTG 58.838 40.000 0.00 0.00 33.17 3.21
2159 2526 9.806203 CAACTGAAAATATCTGCATATTCCAAA 57.194 29.630 0.00 0.00 34.57 3.28
2238 2605 9.691362 AACTACCATGTGATTTGTTTAAACATC 57.309 29.630 21.17 16.55 38.95 3.06
2332 2699 7.503902 AGCTTGAAAGAAAAGGACATCTAAAGT 59.496 33.333 0.00 0.00 0.00 2.66
2487 2854 2.292016 CTGGTGTTTAATTGGACGCACA 59.708 45.455 8.29 4.40 0.00 4.57
2526 2893 6.309737 ACTCGACACGGCTTAGTAAAAATAAG 59.690 38.462 0.00 0.00 34.09 1.73
2860 3231 2.967201 TCCCGGTACCTATACACCATTG 59.033 50.000 10.90 0.00 34.25 2.82
2879 3250 1.898574 CACCCTGTGTGCCAACTCC 60.899 63.158 0.00 0.00 38.34 3.85
2891 3262 2.286523 AAGAGCCTCGTCCACCCTG 61.287 63.158 0.00 0.00 0.00 4.45
3035 3406 0.389948 AGCAGTCGTAGAAAAGGCCG 60.390 55.000 0.00 0.00 39.69 6.13
3203 3574 4.933505 TTTCATCATCCAAAACACAGCA 57.066 36.364 0.00 0.00 0.00 4.41
3260 3631 1.081892 CAGCAGGGTTCATCTTGTCG 58.918 55.000 0.00 0.00 0.00 4.35
3529 3900 4.096231 TCATCCACAATGTTTAGGAATGCG 59.904 41.667 0.00 0.00 36.68 4.73
3584 3955 4.952071 TGATTGTGAAAGAAATGGCCAA 57.048 36.364 10.96 0.00 0.00 4.52
3640 4011 8.768957 TCAATCAACACAAATTTCACTTGAAA 57.231 26.923 6.85 6.85 46.60 2.69
3643 4014 8.111836 CAGTTCAATCAACACAAATTTCACTTG 58.888 33.333 0.00 0.00 37.48 3.16
3690 4061 3.338249 GAACAGCAAGAGCAACCATCTA 58.662 45.455 0.00 0.00 45.49 1.98
3714 4085 3.502237 GCAACAGGCAAATGTCAGG 57.498 52.632 0.00 0.00 43.97 3.86
3726 4098 0.949397 TGCAGCAGAAAGAGCAACAG 59.051 50.000 0.00 0.00 33.48 3.16
3763 4135 5.978322 GGCTCTTCACTAGTAAAATACGGAG 59.022 44.000 0.00 0.00 0.00 4.63
3765 4137 5.903810 AGGCTCTTCACTAGTAAAATACGG 58.096 41.667 0.00 0.00 0.00 4.02
3766 4138 8.922058 TTTAGGCTCTTCACTAGTAAAATACG 57.078 34.615 0.00 0.00 0.00 3.06
3767 4139 8.819015 GCTTTAGGCTCTTCACTAGTAAAATAC 58.181 37.037 0.00 0.00 38.06 1.89
3768 4140 8.943909 GCTTTAGGCTCTTCACTAGTAAAATA 57.056 34.615 0.00 0.00 38.06 1.40
3769 4141 7.851387 GCTTTAGGCTCTTCACTAGTAAAAT 57.149 36.000 0.00 0.00 38.06 1.82
3885 4257 6.202937 TCAACACAAAGTTAATGTTAAGGCG 58.797 36.000 4.76 0.00 38.74 5.52
3994 4366 0.678950 TGCACTCGGTCACATTCTGA 59.321 50.000 0.00 0.00 0.00 3.27
4018 4390 2.202756 GTCACAGTCCGCGATCCC 60.203 66.667 8.23 0.00 0.00 3.85
4160 4532 2.730094 CAGTGGCAGGTTGTTGGC 59.270 61.111 0.00 0.00 43.38 4.52
4325 4697 2.765807 CCCCCTGCTGTCCTCGAT 60.766 66.667 0.00 0.00 0.00 3.59
4363 4735 7.897575 AACAAAGAAACAAAACATAGTGCAA 57.102 28.000 0.00 0.00 0.00 4.08
4364 4736 7.897575 AAACAAAGAAACAAAACATAGTGCA 57.102 28.000 0.00 0.00 0.00 4.57
4493 4865 5.046376 TGAGAGGACAGATTTTACATCAGCA 60.046 40.000 0.00 0.00 0.00 4.41
4495 4867 7.388776 TGTTTGAGAGGACAGATTTTACATCAG 59.611 37.037 0.00 0.00 0.00 2.90
4614 5027 6.245890 TCAAAAGGTGTTCCCAAATTTCAT 57.754 33.333 0.00 0.00 34.66 2.57
4619 5032 6.542005 GTGAATTTCAAAAGGTGTTCCCAAAT 59.458 34.615 0.00 0.00 34.66 2.32
4757 5171 7.869800 ACAGAAAAGTGTGCAAATTTCAAAAA 58.130 26.923 13.74 0.00 34.91 1.94
4758 5172 7.432350 ACAGAAAAGTGTGCAAATTTCAAAA 57.568 28.000 13.74 0.00 34.91 2.44
4759 5173 8.715191 ATACAGAAAAGTGTGCAAATTTCAAA 57.285 26.923 13.74 3.56 34.91 2.69
4760 5174 7.978414 TGATACAGAAAAGTGTGCAAATTTCAA 59.022 29.630 13.74 3.80 34.91 2.69
4761 5175 7.487484 TGATACAGAAAAGTGTGCAAATTTCA 58.513 30.769 13.74 0.00 34.91 2.69
4762 5176 7.928908 TGATACAGAAAAGTGTGCAAATTTC 57.071 32.000 0.00 0.00 33.13 2.17
4763 5177 8.715191 TTTGATACAGAAAAGTGTGCAAATTT 57.285 26.923 0.00 0.00 34.18 1.82
4764 5178 8.603181 GTTTTGATACAGAAAAGTGTGCAAATT 58.397 29.630 0.00 0.00 36.64 1.82
4765 5179 7.763528 TGTTTTGATACAGAAAAGTGTGCAAAT 59.236 29.630 0.00 0.00 36.64 2.32
4766 5180 7.093354 TGTTTTGATACAGAAAAGTGTGCAAA 58.907 30.769 0.00 0.00 35.78 3.68
4767 5181 6.625362 TGTTTTGATACAGAAAAGTGTGCAA 58.375 32.000 0.00 0.00 31.46 4.08
4768 5182 6.201226 TGTTTTGATACAGAAAAGTGTGCA 57.799 33.333 0.00 0.00 31.46 4.57
4769 5183 8.795786 TTATGTTTTGATACAGAAAAGTGTGC 57.204 30.769 0.00 0.00 31.46 4.57
4791 5205 4.202398 CCCTCAGTATGGCATGTGTCTTAT 60.202 45.833 10.98 0.00 36.16 1.73
4798 5212 1.885049 ACTCCCTCAGTATGGCATGT 58.115 50.000 10.98 0.00 36.16 3.21
4843 5257 8.742777 TCTTTGTCTATTTCCCATTTGATTGAG 58.257 33.333 0.00 0.00 0.00 3.02
4844 5258 8.648698 TCTTTGTCTATTTCCCATTTGATTGA 57.351 30.769 0.00 0.00 0.00 2.57
4845 5259 9.880157 AATCTTTGTCTATTTCCCATTTGATTG 57.120 29.630 0.00 0.00 0.00 2.67
4867 5306 6.357367 GTGAGGACATAAACATGGGTAATCT 58.643 40.000 0.00 0.00 0.00 2.40
4907 5346 9.658799 AGCAATATACACGAGCAAGAAATATAT 57.341 29.630 0.00 0.00 0.00 0.86
4908 5347 9.489084 AAGCAATATACACGAGCAAGAAATATA 57.511 29.630 0.00 0.00 0.00 0.86
4909 5348 7.969536 AGCAATATACACGAGCAAGAAATAT 57.030 32.000 0.00 0.00 0.00 1.28
4940 5379 3.453353 CCCTCGATCTTTGTAAACCCCTA 59.547 47.826 0.00 0.00 0.00 3.53
5019 5508 1.098712 GGCACACAACGAGGAAACCA 61.099 55.000 0.00 0.00 0.00 3.67
5031 5520 0.251297 CAGAGGATTTGGGGCACACA 60.251 55.000 0.00 0.00 0.00 3.72
5077 5566 2.589157 CCTTGGGTGGTAGTGCCGA 61.589 63.158 0.00 0.00 41.21 5.54
5098 5587 3.040206 GCCCCCTTAGGTCGGTTCC 62.040 68.421 0.00 0.00 0.00 3.62
5135 5624 3.987547 ACATATCGAATGCCAGACTGAG 58.012 45.455 3.32 0.00 0.00 3.35
5142 5631 4.142491 GGTGTTTCAACATATCGAATGCCA 60.142 41.667 0.00 0.00 41.59 4.92
5146 5635 4.640201 CAGGGGTGTTTCAACATATCGAAT 59.360 41.667 0.00 0.00 41.59 3.34
5158 5647 1.037579 GCTATGGCCAGGGGTGTTTC 61.038 60.000 13.05 0.00 0.00 2.78
5161 5650 2.613696 TGCTATGGCCAGGGGTGT 60.614 61.111 13.05 0.00 37.74 4.16
5167 5656 1.229428 CATTACGGTGCTATGGCCAG 58.771 55.000 13.05 0.00 37.74 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.