Multiple sequence alignment - TraesCS2B01G189200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G189200 chr2B 100.000 4398 0 0 1 4398 164907734 164903337 0.000000e+00 8122.0
1 TraesCS2B01G189200 chr2B 81.748 778 97 20 3578 4353 140142361 140143095 3.760000e-170 608.0
2 TraesCS2B01G189200 chr2B 96.667 90 3 0 3485 3574 74002834 74002923 2.740000e-32 150.0
3 TraesCS2B01G189200 chr2B 94.737 95 5 0 3485 3579 728343401 728343307 9.860000e-32 148.0
4 TraesCS2B01G189200 chr2D 97.269 2600 70 1 885 3484 114523203 114520605 0.000000e+00 4407.0
5 TraesCS2B01G189200 chr2D 91.969 635 22 5 3775 4398 114520285 114519669 0.000000e+00 863.0
6 TraesCS2B01G189200 chr2D 91.028 457 33 7 445 898 114523693 114523242 1.050000e-170 610.0
7 TraesCS2B01G189200 chr2D 88.090 445 43 6 3 444 114524175 114523738 1.810000e-143 520.0
8 TraesCS2B01G189200 chr2D 93.237 207 13 1 3571 3776 114520606 114520400 1.990000e-78 303.0
9 TraesCS2B01G189200 chr2D 93.684 95 6 0 3485 3579 598951323 598951229 4.590000e-30 143.0
10 TraesCS2B01G189200 chr2D 83.333 108 16 2 3580 3686 572791841 572791735 1.010000e-16 99.0
11 TraesCS2B01G189200 chr2A 94.291 2855 127 17 638 3484 115718908 115716082 0.000000e+00 4337.0
12 TraesCS2B01G189200 chr2A 91.677 841 30 16 3576 4398 115716077 115715259 0.000000e+00 1129.0
13 TraesCS2B01G189200 chr2A 88.421 190 12 6 445 630 115719490 115719307 2.060000e-53 220.0
14 TraesCS2B01G189200 chr5A 82.424 825 104 20 3578 4398 535493871 535493084 0.000000e+00 682.0
15 TraesCS2B01G189200 chr5A 81.499 827 111 18 3578 4398 680358491 680357701 3.710000e-180 641.0
16 TraesCS2B01G189200 chr7A 81.862 827 109 18 3578 4398 64417788 64418579 0.000000e+00 658.0
17 TraesCS2B01G189200 chr5B 81.586 782 98 21 3578 4356 382905791 382905053 4.870000e-169 604.0
18 TraesCS2B01G189200 chr5B 81.354 783 99 22 3578 4356 24673642 24672903 1.050000e-165 593.0
19 TraesCS2B01G189200 chr5B 82.451 359 51 9 3688 4039 547543209 547543562 1.990000e-78 303.0
20 TraesCS2B01G189200 chr5B 85.321 109 14 2 3580 3686 547542993 547543101 1.290000e-20 111.0
21 TraesCS2B01G189200 chr7B 81.202 782 101 21 3578 4356 538121737 538120999 4.900000e-164 588.0
22 TraesCS2B01G189200 chr3B 83.136 338 46 6 3707 4039 612031827 612032158 9.250000e-77 298.0
23 TraesCS2B01G189200 chr3B 85.321 109 14 2 3580 3686 612031603 612031711 1.290000e-20 111.0
24 TraesCS2B01G189200 chrUn 85.043 234 27 4 3810 4039 42851116 42850887 9.510000e-57 231.0
25 TraesCS2B01G189200 chrUn 84.583 240 29 4 3804 4039 331603449 331603684 9.510000e-57 231.0
26 TraesCS2B01G189200 chr3D 94.681 94 5 0 3485 3578 445019130 445019037 3.540000e-31 147.0
27 TraesCS2B01G189200 chr5D 96.552 87 3 0 3485 3571 288354301 288354387 1.270000e-30 145.0
28 TraesCS2B01G189200 chr1D 93.684 95 6 0 3481 3575 225458810 225458716 4.590000e-30 143.0
29 TraesCS2B01G189200 chr1D 92.157 102 4 3 3480 3577 324624229 324624128 1.650000e-29 141.0
30 TraesCS2B01G189200 chr6D 92.079 101 6 2 3485 3584 17996651 17996552 1.650000e-29 141.0
31 TraesCS2B01G189200 chr6D 91.089 101 7 2 3485 3584 17977685 17977586 7.670000e-28 135.0
32 TraesCS2B01G189200 chr7D 92.308 65 5 0 3976 4040 306457294 306457358 4.680000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G189200 chr2B 164903337 164907734 4397 True 8122.000000 8122 100.0000 1 4398 1 chr2B.!!$R1 4397
1 TraesCS2B01G189200 chr2B 140142361 140143095 734 False 608.000000 608 81.7480 3578 4353 1 chr2B.!!$F2 775
2 TraesCS2B01G189200 chr2D 114519669 114524175 4506 True 1340.600000 4407 92.3186 3 4398 5 chr2D.!!$R3 4395
3 TraesCS2B01G189200 chr2A 115715259 115719490 4231 True 1895.333333 4337 91.4630 445 4398 3 chr2A.!!$R1 3953
4 TraesCS2B01G189200 chr5A 535493084 535493871 787 True 682.000000 682 82.4240 3578 4398 1 chr5A.!!$R1 820
5 TraesCS2B01G189200 chr5A 680357701 680358491 790 True 641.000000 641 81.4990 3578 4398 1 chr5A.!!$R2 820
6 TraesCS2B01G189200 chr7A 64417788 64418579 791 False 658.000000 658 81.8620 3578 4398 1 chr7A.!!$F1 820
7 TraesCS2B01G189200 chr5B 382905053 382905791 738 True 604.000000 604 81.5860 3578 4356 1 chr5B.!!$R2 778
8 TraesCS2B01G189200 chr5B 24672903 24673642 739 True 593.000000 593 81.3540 3578 4356 1 chr5B.!!$R1 778
9 TraesCS2B01G189200 chr5B 547542993 547543562 569 False 207.000000 303 83.8860 3580 4039 2 chr5B.!!$F1 459
10 TraesCS2B01G189200 chr7B 538120999 538121737 738 True 588.000000 588 81.2020 3578 4356 1 chr7B.!!$R1 778
11 TraesCS2B01G189200 chr3B 612031603 612032158 555 False 204.500000 298 84.2285 3580 4039 2 chr3B.!!$F1 459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 1.228124 CCGCCTGTCAGGGAAACAA 60.228 57.895 20.72 0.0 35.37 2.83 F
1391 1921 1.076632 CTCCTCCTACCGCTCCTGT 60.077 63.158 0.00 0.0 0.00 4.00 F
2357 2887 0.032540 CAGGATGGATGACGCGATGA 59.967 55.000 15.93 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1843 2373 1.067295 TCATCCTGTCCACAAGCCTT 58.933 50.0 0.0 0.0 0.00 4.35 R
3085 3615 0.738762 GCCCTTTAACCTCGTCGGAC 60.739 60.0 0.0 0.0 36.31 4.79 R
3561 4104 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.0 0.0 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.228124 CCGCCTGTCAGGGAAACAA 60.228 57.895 20.72 0.00 35.37 2.83
39 40 2.749800 GCCTGTCAGGGAAACAAAGAGT 60.750 50.000 20.72 0.00 35.37 3.24
40 41 2.880890 CCTGTCAGGGAAACAAAGAGTG 59.119 50.000 11.46 0.00 0.00 3.51
41 42 2.880890 CTGTCAGGGAAACAAAGAGTGG 59.119 50.000 0.00 0.00 0.00 4.00
51 52 2.338809 ACAAAGAGTGGAGGGATGTGA 58.661 47.619 0.00 0.00 0.00 3.58
86 87 2.989422 GCAACCTAATGCGACTGTTT 57.011 45.000 0.00 0.00 36.45 2.83
106 107 7.660208 ACTGTTTTAGATCATACCACTTCGTTT 59.340 33.333 0.00 0.00 0.00 3.60
112 113 6.668323 AGATCATACCACTTCGTTTGTTTTG 58.332 36.000 0.00 0.00 0.00 2.44
126 127 6.093357 TCGTTTGTTTTGCATGCAGAGATATA 59.907 34.615 21.50 0.37 0.00 0.86
127 128 6.195244 CGTTTGTTTTGCATGCAGAGATATAC 59.805 38.462 21.50 11.42 0.00 1.47
128 129 5.756195 TGTTTTGCATGCAGAGATATACC 57.244 39.130 21.50 3.51 0.00 2.73
137 138 2.630098 GCAGAGATATACCAGGCTCACA 59.370 50.000 0.00 0.00 0.00 3.58
169 171 4.100035 TGCACAGTACTAGATCAGATTGGG 59.900 45.833 0.00 0.00 0.00 4.12
205 207 5.778862 GCATATATTGCCCCGTTTTATTGT 58.221 37.500 0.08 0.00 46.15 2.71
206 208 6.220201 GCATATATTGCCCCGTTTTATTGTT 58.780 36.000 0.08 0.00 46.15 2.83
207 209 6.704050 GCATATATTGCCCCGTTTTATTGTTT 59.296 34.615 0.08 0.00 46.15 2.83
208 210 7.095816 GCATATATTGCCCCGTTTTATTGTTTC 60.096 37.037 0.08 0.00 46.15 2.78
209 211 3.388345 TTGCCCCGTTTTATTGTTTCC 57.612 42.857 0.00 0.00 0.00 3.13
210 212 2.599677 TGCCCCGTTTTATTGTTTCCT 58.400 42.857 0.00 0.00 0.00 3.36
211 213 3.764218 TGCCCCGTTTTATTGTTTCCTA 58.236 40.909 0.00 0.00 0.00 2.94
212 214 3.506844 TGCCCCGTTTTATTGTTTCCTAC 59.493 43.478 0.00 0.00 0.00 3.18
213 215 3.119388 GCCCCGTTTTATTGTTTCCTACC 60.119 47.826 0.00 0.00 0.00 3.18
214 216 4.338012 CCCCGTTTTATTGTTTCCTACCT 58.662 43.478 0.00 0.00 0.00 3.08
215 217 5.499313 CCCCGTTTTATTGTTTCCTACCTA 58.501 41.667 0.00 0.00 0.00 3.08
216 218 6.124340 CCCCGTTTTATTGTTTCCTACCTAT 58.876 40.000 0.00 0.00 0.00 2.57
217 219 6.261603 CCCCGTTTTATTGTTTCCTACCTATC 59.738 42.308 0.00 0.00 0.00 2.08
218 220 7.052248 CCCGTTTTATTGTTTCCTACCTATCT 58.948 38.462 0.00 0.00 0.00 1.98
219 221 7.555195 CCCGTTTTATTGTTTCCTACCTATCTT 59.445 37.037 0.00 0.00 0.00 2.40
220 222 9.603921 CCGTTTTATTGTTTCCTACCTATCTTA 57.396 33.333 0.00 0.00 0.00 2.10
284 286 8.324163 TCTCCTAAAAATCTAGAAACTTGCAC 57.676 34.615 0.00 0.00 0.00 4.57
285 287 7.936847 TCTCCTAAAAATCTAGAAACTTGCACA 59.063 33.333 0.00 0.00 0.00 4.57
286 288 7.871853 TCCTAAAAATCTAGAAACTTGCACAC 58.128 34.615 0.00 0.00 0.00 3.82
287 289 7.500892 TCCTAAAAATCTAGAAACTTGCACACA 59.499 33.333 0.00 0.00 0.00 3.72
288 290 8.299570 CCTAAAAATCTAGAAACTTGCACACAT 58.700 33.333 0.00 0.00 0.00 3.21
291 293 7.986085 AAATCTAGAAACTTGCACACATACT 57.014 32.000 0.00 0.00 0.00 2.12
292 294 7.602517 AATCTAGAAACTTGCACACATACTC 57.397 36.000 0.00 0.00 0.00 2.59
293 295 5.161358 TCTAGAAACTTGCACACATACTCG 58.839 41.667 0.00 0.00 0.00 4.18
294 296 3.990092 AGAAACTTGCACACATACTCGA 58.010 40.909 0.00 0.00 0.00 4.04
295 297 4.569943 AGAAACTTGCACACATACTCGAT 58.430 39.130 0.00 0.00 0.00 3.59
296 298 5.720202 AGAAACTTGCACACATACTCGATA 58.280 37.500 0.00 0.00 0.00 2.92
297 299 6.163476 AGAAACTTGCACACATACTCGATAA 58.837 36.000 0.00 0.00 0.00 1.75
298 300 6.649141 AGAAACTTGCACACATACTCGATAAA 59.351 34.615 0.00 0.00 0.00 1.40
299 301 6.795098 AACTTGCACACATACTCGATAAAA 57.205 33.333 0.00 0.00 0.00 1.52
300 302 6.985188 ACTTGCACACATACTCGATAAAAT 57.015 33.333 0.00 0.00 0.00 1.82
301 303 8.487313 AACTTGCACACATACTCGATAAAATA 57.513 30.769 0.00 0.00 0.00 1.40
302 304 8.662781 ACTTGCACACATACTCGATAAAATAT 57.337 30.769 0.00 0.00 0.00 1.28
303 305 9.758651 ACTTGCACACATACTCGATAAAATATA 57.241 29.630 0.00 0.00 0.00 0.86
305 307 9.974980 TTGCACACATACTCGATAAAATATAGA 57.025 29.630 0.00 0.00 0.00 1.98
306 308 9.626045 TGCACACATACTCGATAAAATATAGAG 57.374 33.333 6.10 6.10 35.28 2.43
307 309 9.841880 GCACACATACTCGATAAAATATAGAGA 57.158 33.333 12.51 0.69 33.53 3.10
329 331 8.830915 GAGAGTATATTTCCCTCTCCATATCA 57.169 38.462 4.88 0.00 43.45 2.15
330 332 9.261035 GAGAGTATATTTCCCTCTCCATATCAA 57.739 37.037 4.88 0.00 43.45 2.57
331 333 9.621239 AGAGTATATTTCCCTCTCCATATCAAA 57.379 33.333 0.00 0.00 29.71 2.69
377 379 9.913310 TCTGTTATGGACATTATAAATTCCACA 57.087 29.630 16.79 11.42 40.96 4.17
379 381 9.913310 TGTTATGGACATTATAAATTCCACAGA 57.087 29.630 16.79 6.55 40.96 3.41
453 455 4.400529 TTTATATGCGCACTCCTCTCAA 57.599 40.909 14.90 0.00 0.00 3.02
461 463 3.375299 GCGCACTCCTCTCAATTTGTTAT 59.625 43.478 0.30 0.00 0.00 1.89
504 509 7.945134 ACTATTTAAATGGCCTCTAAATGCAG 58.055 34.615 19.28 14.52 0.00 4.41
506 511 6.849085 TTTAAATGGCCTCTAAATGCAGAA 57.151 33.333 3.32 0.00 0.00 3.02
561 1033 9.300681 TCCATTTGGATATGTCATTTTATCTCC 57.699 33.333 0.00 0.00 39.78 3.71
601 1073 6.721704 AGGAGCCAGATCCAATTTAAAATC 57.278 37.500 4.52 0.00 42.26 2.17
608 1080 9.783081 GCCAGATCCAATTTAAAATCCAAATAT 57.217 29.630 0.00 0.00 0.00 1.28
880 1357 7.573968 ACCTATTTATTGAGCTCAACATTCC 57.426 36.000 30.66 0.00 38.86 3.01
883 1360 8.636213 CCTATTTATTGAGCTCAACATTCCAAT 58.364 33.333 30.66 17.53 38.86 3.16
997 1526 2.331194 CGTGTCCACTTAACCTAACGG 58.669 52.381 0.00 0.00 0.00 4.44
1039 1568 2.039787 TGAGCCGATGGGTGGGTA 59.960 61.111 0.00 0.00 37.33 3.69
1141 1671 3.213402 GACCTCTCTCGCCTCCGG 61.213 72.222 0.00 0.00 34.56 5.14
1228 1758 2.285743 GCCACCTCCCTCCTCCTT 60.286 66.667 0.00 0.00 0.00 3.36
1343 1873 1.356494 CCTCCTTGAATCCCTCCCCC 61.356 65.000 0.00 0.00 0.00 5.40
1391 1921 1.076632 CTCCTCCTACCGCTCCTGT 60.077 63.158 0.00 0.00 0.00 4.00
1807 2337 3.004629 ACACGTTCAATGACATTGTGCAT 59.995 39.130 23.98 9.26 41.02 3.96
1915 2445 0.253020 ACGGGTTCCTTATCCAGGGT 60.253 55.000 0.00 0.00 44.12 4.34
1939 2469 2.743928 CGAGCAAGGCAGGTGGAC 60.744 66.667 0.00 0.00 0.00 4.02
2041 2571 0.246635 GGAAGCTAACAGAGGCGACA 59.753 55.000 0.00 0.00 0.00 4.35
2133 2663 2.163601 CTTTGCAAGCTTGGGAGGCC 62.164 60.000 27.10 10.29 0.00 5.19
2189 2719 1.600023 TAAGGGTTGTGCTCCAAACG 58.400 50.000 0.00 0.00 41.98 3.60
2264 2794 0.096628 CATGAGAGCAACGCTGAAGC 59.903 55.000 0.00 0.00 39.88 3.86
2296 2826 4.321452 GCAAATGGCTTGAGTCTGAATTCA 60.321 41.667 8.12 8.12 40.25 2.57
2357 2887 0.032540 CAGGATGGATGACGCGATGA 59.967 55.000 15.93 0.00 0.00 2.92
2515 3045 7.691050 GGTGTTGTTGCGAATAGAATAACTTAC 59.309 37.037 0.00 0.00 0.00 2.34
2617 3147 5.650266 TGGTTGTTCACTTGATGTTGTTAGT 59.350 36.000 0.00 0.00 0.00 2.24
2664 3194 4.082081 GTGCAAAGATGGGAATGTTGATCA 60.082 41.667 0.00 0.00 0.00 2.92
3070 3600 5.021033 TGGTGCAAAATTTTGTCAGACAT 57.979 34.783 27.13 0.00 40.24 3.06
3115 3646 6.127730 ACGAGGTTAAAGGGCATTAATTTCTG 60.128 38.462 0.00 0.00 0.00 3.02
3178 3710 2.771089 ACCACAGCTACAGATGTTGTG 58.229 47.619 3.82 8.61 42.67 3.33
3327 3859 6.812879 ATTTTGTTGTACCACTAGTAAGCC 57.187 37.500 0.00 0.00 31.05 4.35
3332 3864 3.104512 TGTACCACTAGTAAGCCTGCAT 58.895 45.455 0.00 0.00 31.05 3.96
3353 3885 2.334971 TGCAATGCACGTCTCATTTG 57.665 45.000 2.72 7.20 32.30 2.32
3354 3886 1.878734 TGCAATGCACGTCTCATTTGA 59.121 42.857 2.72 0.00 32.30 2.69
3355 3887 2.292845 TGCAATGCACGTCTCATTTGAA 59.707 40.909 2.72 0.26 32.30 2.69
3356 3888 3.243334 TGCAATGCACGTCTCATTTGAAA 60.243 39.130 2.72 0.00 32.30 2.69
3357 3889 3.922240 GCAATGCACGTCTCATTTGAAAT 59.078 39.130 0.00 0.00 32.30 2.17
3476 4019 4.259734 GCACGTACACTGCGAATTTAAATG 59.740 41.667 0.39 0.00 0.00 2.32
3484 4027 6.092092 CACTGCGAATTTAAATGTTGATGGA 58.908 36.000 0.39 0.00 0.00 3.41
3485 4028 6.033831 CACTGCGAATTTAAATGTTGATGGAC 59.966 38.462 0.39 0.00 0.00 4.02
3487 4030 6.321717 TGCGAATTTAAATGTTGATGGACTC 58.678 36.000 0.39 0.00 0.00 3.36
3488 4031 5.743872 GCGAATTTAAATGTTGATGGACTCC 59.256 40.000 0.39 0.00 0.00 3.85
3489 4032 6.265577 CGAATTTAAATGTTGATGGACTCCC 58.734 40.000 0.39 0.00 0.00 4.30
3490 4033 6.095440 CGAATTTAAATGTTGATGGACTCCCT 59.905 38.462 0.39 0.00 0.00 4.20
3491 4034 7.410120 AATTTAAATGTTGATGGACTCCCTC 57.590 36.000 0.39 0.00 0.00 4.30
3492 4035 5.779241 TTAAATGTTGATGGACTCCCTCT 57.221 39.130 2.42 0.00 0.00 3.69
3493 4036 3.641434 AATGTTGATGGACTCCCTCTG 57.359 47.619 2.42 0.00 0.00 3.35
3494 4037 2.030027 TGTTGATGGACTCCCTCTGT 57.970 50.000 2.42 0.00 0.00 3.41
3495 4038 1.902508 TGTTGATGGACTCCCTCTGTC 59.097 52.381 2.42 0.00 0.00 3.51
3499 4042 4.818314 GGACTCCCTCTGTCCCAT 57.182 61.111 1.76 0.00 46.01 4.00
3500 4043 3.948425 GGACTCCCTCTGTCCCATA 57.052 57.895 1.76 0.00 46.01 2.74
3501 4044 2.176247 GGACTCCCTCTGTCCCATAA 57.824 55.000 1.76 0.00 46.01 1.90
3502 4045 2.695585 GGACTCCCTCTGTCCCATAAT 58.304 52.381 1.76 0.00 46.01 1.28
3503 4046 3.858135 GGACTCCCTCTGTCCCATAATA 58.142 50.000 1.76 0.00 46.01 0.98
3504 4047 3.579151 GGACTCCCTCTGTCCCATAATAC 59.421 52.174 1.76 0.00 46.01 1.89
3505 4048 4.223953 GACTCCCTCTGTCCCATAATACA 58.776 47.826 0.00 0.00 0.00 2.29
3506 4049 4.631234 ACTCCCTCTGTCCCATAATACAA 58.369 43.478 0.00 0.00 0.00 2.41
3507 4050 4.656112 ACTCCCTCTGTCCCATAATACAAG 59.344 45.833 0.00 0.00 0.00 3.16
3508 4051 4.890988 TCCCTCTGTCCCATAATACAAGA 58.109 43.478 0.00 0.00 0.00 3.02
3509 4052 4.654262 TCCCTCTGTCCCATAATACAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
3510 4053 4.501571 CCCTCTGTCCCATAATACAAGACG 60.502 50.000 0.00 0.00 0.00 4.18
3511 4054 4.099573 CCTCTGTCCCATAATACAAGACGT 59.900 45.833 0.00 0.00 0.00 4.34
3512 4055 5.395324 CCTCTGTCCCATAATACAAGACGTT 60.395 44.000 0.00 0.00 0.00 3.99
3513 4056 6.183360 CCTCTGTCCCATAATACAAGACGTTA 60.183 42.308 0.00 0.00 0.00 3.18
3514 4057 7.356089 TCTGTCCCATAATACAAGACGTTAT 57.644 36.000 0.00 0.00 0.00 1.89
3515 4058 7.788026 TCTGTCCCATAATACAAGACGTTATT 58.212 34.615 0.00 0.00 0.00 1.40
3516 4059 8.916062 TCTGTCCCATAATACAAGACGTTATTA 58.084 33.333 0.00 0.00 0.00 0.98
3517 4060 8.876275 TGTCCCATAATACAAGACGTTATTAC 57.124 34.615 0.00 0.00 0.00 1.89
3518 4061 8.476447 TGTCCCATAATACAAGACGTTATTACA 58.524 33.333 0.00 0.00 0.00 2.41
3519 4062 9.485206 GTCCCATAATACAAGACGTTATTACAT 57.515 33.333 0.00 0.00 0.00 2.29
3520 4063 9.701098 TCCCATAATACAAGACGTTATTACATC 57.299 33.333 0.00 0.00 0.00 3.06
3521 4064 8.932791 CCCATAATACAAGACGTTATTACATCC 58.067 37.037 0.00 0.00 0.00 3.51
3522 4065 9.483916 CCATAATACAAGACGTTATTACATCCA 57.516 33.333 0.00 0.00 0.00 3.41
3528 4071 8.958119 ACAAGACGTTATTACATCCAATATGT 57.042 30.769 0.00 0.00 36.13 2.29
3529 4072 8.826710 ACAAGACGTTATTACATCCAATATGTG 58.173 33.333 0.00 0.00 33.76 3.21
3530 4073 9.040939 CAAGACGTTATTACATCCAATATGTGA 57.959 33.333 0.00 0.00 33.76 3.58
3531 4074 8.818141 AGACGTTATTACATCCAATATGTGAG 57.182 34.615 0.00 0.00 33.76 3.51
3532 4075 8.421784 AGACGTTATTACATCCAATATGTGAGT 58.578 33.333 0.00 0.00 33.76 3.41
3533 4076 9.687210 GACGTTATTACATCCAATATGTGAGTA 57.313 33.333 0.00 0.00 33.76 2.59
3571 4114 6.546428 ACATCTTATATTATGGGACGGAGG 57.454 41.667 0.00 0.00 0.00 4.30
3572 4115 5.425539 ACATCTTATATTATGGGACGGAGGG 59.574 44.000 0.00 0.00 0.00 4.30
3573 4116 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3641 4188 3.581755 CACCAGCATTCACAAATCAAGG 58.418 45.455 0.00 0.00 0.00 3.61
3656 4203 8.517878 CACAAATCAAGGATCTTAATGAACACT 58.482 33.333 0.00 0.00 0.00 3.55
3828 4620 4.215399 ACGGTTCACCATCATTTAACTGTG 59.785 41.667 0.00 0.00 38.04 3.66
3941 4738 5.522460 GCGTTGTTTAGCTCATAGAATACCA 59.478 40.000 0.00 0.00 0.00 3.25
3960 4757 2.487934 CATTCCTCATTCCAGGCTACG 58.512 52.381 0.00 0.00 32.91 3.51
4049 4846 7.917505 AGCAAATATATTTCAGTTGCAGCTTAC 59.082 33.333 17.20 0.00 45.47 2.34
4050 4847 7.701924 GCAAATATATTTCAGTTGCAGCTTACA 59.298 33.333 7.76 0.00 43.17 2.41
4051 4848 9.013490 CAAATATATTTCAGTTGCAGCTTACAC 57.987 33.333 7.76 0.00 0.00 2.90
4052 4849 7.864108 ATATATTTCAGTTGCAGCTTACACA 57.136 32.000 0.00 0.00 0.00 3.72
4053 4850 4.916983 ATTTCAGTTGCAGCTTACACAA 57.083 36.364 0.00 0.00 0.00 3.33
4054 4851 4.710423 TTTCAGTTGCAGCTTACACAAA 57.290 36.364 0.00 0.00 0.00 2.83
4055 4852 3.969117 TCAGTTGCAGCTTACACAAAG 57.031 42.857 0.00 0.00 38.32 2.77
4056 4853 3.540617 TCAGTTGCAGCTTACACAAAGA 58.459 40.909 0.00 0.00 37.38 2.52
4057 4854 3.944650 TCAGTTGCAGCTTACACAAAGAA 59.055 39.130 0.00 0.00 37.38 2.52
4058 4855 4.580167 TCAGTTGCAGCTTACACAAAGAAT 59.420 37.500 0.00 0.00 37.38 2.40
4059 4856 5.762711 TCAGTTGCAGCTTACACAAAGAATA 59.237 36.000 0.00 0.00 37.38 1.75
4060 4857 6.430925 TCAGTTGCAGCTTACACAAAGAATAT 59.569 34.615 0.00 0.00 37.38 1.28
4061 4858 6.525628 CAGTTGCAGCTTACACAAAGAATATG 59.474 38.462 0.00 0.00 37.38 1.78
4062 4859 4.985413 TGCAGCTTACACAAAGAATATGC 58.015 39.130 0.00 0.00 37.38 3.14
4063 4860 4.458642 TGCAGCTTACACAAAGAATATGCA 59.541 37.500 0.00 0.00 38.49 3.96
4064 4861 5.032863 GCAGCTTACACAAAGAATATGCAG 58.967 41.667 0.00 0.00 37.38 4.41
4065 4862 5.032863 CAGCTTACACAAAGAATATGCAGC 58.967 41.667 0.00 0.00 37.38 5.25
4066 4863 4.946157 AGCTTACACAAAGAATATGCAGCT 59.054 37.500 0.00 0.00 37.38 4.24
4127 4924 5.464389 ACGTCTTGACTAATGTTACAACCAC 59.536 40.000 0.00 0.00 0.00 4.16
4353 5162 6.058833 TGTAGTTGAGTAGATGCACCAAAAA 58.941 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.407712 GGCGGGCCTTTACTGTCAATA 60.408 52.381 0.84 0.00 0.00 1.90
1 2 0.679960 GGCGGGCCTTTACTGTCAAT 60.680 55.000 0.84 0.00 0.00 2.57
18 19 1.882623 CTCTTTGTTTCCCTGACAGGC 59.117 52.381 16.72 2.85 32.73 4.85
23 24 2.106511 CCTCCACTCTTTGTTTCCCTGA 59.893 50.000 0.00 0.00 0.00 3.86
24 25 2.508526 CCTCCACTCTTTGTTTCCCTG 58.491 52.381 0.00 0.00 0.00 4.45
32 33 2.304180 ACTCACATCCCTCCACTCTTTG 59.696 50.000 0.00 0.00 0.00 2.77
34 35 1.905215 CACTCACATCCCTCCACTCTT 59.095 52.381 0.00 0.00 0.00 2.85
39 40 1.630369 CCTTTCACTCACATCCCTCCA 59.370 52.381 0.00 0.00 0.00 3.86
40 41 1.065126 CCCTTTCACTCACATCCCTCC 60.065 57.143 0.00 0.00 0.00 4.30
41 42 1.630878 ACCCTTTCACTCACATCCCTC 59.369 52.381 0.00 0.00 0.00 4.30
51 52 1.943730 TTGCCCCACACCCTTTCACT 61.944 55.000 0.00 0.00 0.00 3.41
75 76 5.523916 GTGGTATGATCTAAAACAGTCGCAT 59.476 40.000 0.00 0.00 0.00 4.73
77 78 5.109903 AGTGGTATGATCTAAAACAGTCGC 58.890 41.667 0.00 0.00 0.00 5.19
86 87 7.972832 AAACAAACGAAGTGGTATGATCTAA 57.027 32.000 0.00 0.00 45.00 2.10
106 107 5.192176 TGGTATATCTCTGCATGCAAAACA 58.808 37.500 22.88 6.29 0.00 2.83
112 113 2.027377 AGCCTGGTATATCTCTGCATGC 60.027 50.000 11.82 11.82 0.00 4.06
126 127 0.255890 AACACTGTTGTGAGCCTGGT 59.744 50.000 3.03 0.00 46.55 4.00
127 128 1.066002 CAAACACTGTTGTGAGCCTGG 59.934 52.381 3.03 0.00 46.55 4.45
128 129 1.534595 GCAAACACTGTTGTGAGCCTG 60.535 52.381 3.03 0.00 46.55 4.85
183 185 7.383843 GGAAACAATAAAACGGGGCAATATATG 59.616 37.037 0.00 0.00 0.00 1.78
184 186 7.289084 AGGAAACAATAAAACGGGGCAATATAT 59.711 33.333 0.00 0.00 0.00 0.86
191 193 3.119388 GGTAGGAAACAATAAAACGGGGC 60.119 47.826 0.00 0.00 0.00 5.80
194 196 8.502105 AAGATAGGTAGGAAACAATAAAACGG 57.498 34.615 0.00 0.00 0.00 4.44
258 260 8.951243 GTGCAAGTTTCTAGATTTTTAGGAGAT 58.049 33.333 0.00 0.00 0.00 2.75
259 261 7.936847 TGTGCAAGTTTCTAGATTTTTAGGAGA 59.063 33.333 0.00 0.00 0.00 3.71
260 262 8.017946 GTGTGCAAGTTTCTAGATTTTTAGGAG 58.982 37.037 0.00 0.00 0.00 3.69
261 263 7.500892 TGTGTGCAAGTTTCTAGATTTTTAGGA 59.499 33.333 0.00 0.00 0.00 2.94
262 264 7.648142 TGTGTGCAAGTTTCTAGATTTTTAGG 58.352 34.615 0.00 0.00 0.00 2.69
265 267 8.850156 AGTATGTGTGCAAGTTTCTAGATTTTT 58.150 29.630 0.00 0.00 0.00 1.94
266 268 8.396272 AGTATGTGTGCAAGTTTCTAGATTTT 57.604 30.769 0.00 0.00 0.00 1.82
267 269 7.148573 CGAGTATGTGTGCAAGTTTCTAGATTT 60.149 37.037 0.00 0.00 0.00 2.17
268 270 6.311445 CGAGTATGTGTGCAAGTTTCTAGATT 59.689 38.462 0.00 0.00 0.00 2.40
269 271 5.807520 CGAGTATGTGTGCAAGTTTCTAGAT 59.192 40.000 0.00 0.00 0.00 1.98
270 272 5.048294 TCGAGTATGTGTGCAAGTTTCTAGA 60.048 40.000 0.00 0.00 0.00 2.43
271 273 5.161358 TCGAGTATGTGTGCAAGTTTCTAG 58.839 41.667 0.00 0.00 0.00 2.43
272 274 5.128992 TCGAGTATGTGTGCAAGTTTCTA 57.871 39.130 0.00 0.00 0.00 2.10
273 275 3.990092 TCGAGTATGTGTGCAAGTTTCT 58.010 40.909 0.00 0.00 0.00 2.52
274 276 4.928661 ATCGAGTATGTGTGCAAGTTTC 57.071 40.909 0.00 0.00 0.00 2.78
275 277 6.795098 TTTATCGAGTATGTGTGCAAGTTT 57.205 33.333 0.00 0.00 0.00 2.66
276 278 6.795098 TTTTATCGAGTATGTGTGCAAGTT 57.205 33.333 0.00 0.00 0.00 2.66
277 279 6.985188 ATTTTATCGAGTATGTGTGCAAGT 57.015 33.333 0.00 0.00 0.00 3.16
279 281 9.974980 TCTATATTTTATCGAGTATGTGTGCAA 57.025 29.630 0.00 0.00 0.00 4.08
280 282 9.626045 CTCTATATTTTATCGAGTATGTGTGCA 57.374 33.333 0.00 0.00 0.00 4.57
281 283 9.841880 TCTCTATATTTTATCGAGTATGTGTGC 57.158 33.333 0.00 0.00 0.00 4.57
305 307 9.621239 TTTGATATGGAGAGGGAAATATACTCT 57.379 33.333 0.00 0.00 43.81 3.24
351 353 9.913310 TGTGGAATTTATAATGTCCATAACAGA 57.087 29.630 16.61 0.00 42.01 3.41
353 355 9.913310 TCTGTGGAATTTATAATGTCCATAACA 57.087 29.630 16.61 11.18 42.01 2.41
421 423 9.030301 GGAGTGCGCATATAAATATTTTGTTTT 57.970 29.630 15.91 0.00 0.00 2.43
422 424 8.413229 AGGAGTGCGCATATAAATATTTTGTTT 58.587 29.630 15.91 0.00 0.00 2.83
423 425 7.940850 AGGAGTGCGCATATAAATATTTTGTT 58.059 30.769 15.91 0.00 0.00 2.83
424 426 7.445402 AGAGGAGTGCGCATATAAATATTTTGT 59.555 33.333 15.91 0.00 0.00 2.83
425 427 7.810658 AGAGGAGTGCGCATATAAATATTTTG 58.189 34.615 15.91 0.00 0.00 2.44
426 428 7.661437 TGAGAGGAGTGCGCATATAAATATTTT 59.339 33.333 15.91 0.00 0.00 1.82
427 429 7.161404 TGAGAGGAGTGCGCATATAAATATTT 58.839 34.615 15.91 5.89 0.00 1.40
428 430 6.701340 TGAGAGGAGTGCGCATATAAATATT 58.299 36.000 15.91 0.00 0.00 1.28
429 431 6.286240 TGAGAGGAGTGCGCATATAAATAT 57.714 37.500 15.91 0.00 0.00 1.28
430 432 5.722021 TGAGAGGAGTGCGCATATAAATA 57.278 39.130 15.91 0.00 0.00 1.40
431 433 4.607293 TGAGAGGAGTGCGCATATAAAT 57.393 40.909 15.91 0.00 0.00 1.40
432 434 4.400529 TTGAGAGGAGTGCGCATATAAA 57.599 40.909 15.91 0.00 0.00 1.40
433 435 4.607293 ATTGAGAGGAGTGCGCATATAA 57.393 40.909 15.91 1.26 0.00 0.98
434 436 4.607293 AATTGAGAGGAGTGCGCATATA 57.393 40.909 15.91 0.00 0.00 0.86
435 437 3.482156 AATTGAGAGGAGTGCGCATAT 57.518 42.857 15.91 5.34 0.00 1.78
436 438 2.938451 CAAATTGAGAGGAGTGCGCATA 59.062 45.455 15.91 0.00 0.00 3.14
437 439 1.741706 CAAATTGAGAGGAGTGCGCAT 59.258 47.619 15.91 1.95 0.00 4.73
438 440 1.159285 CAAATTGAGAGGAGTGCGCA 58.841 50.000 5.66 5.66 0.00 6.09
439 441 1.160137 ACAAATTGAGAGGAGTGCGC 58.840 50.000 0.00 0.00 0.00 6.09
440 442 6.293081 CCATATAACAAATTGAGAGGAGTGCG 60.293 42.308 0.00 0.00 0.00 5.34
441 443 6.543831 ACCATATAACAAATTGAGAGGAGTGC 59.456 38.462 0.00 0.00 0.00 4.40
442 444 8.511604 AACCATATAACAAATTGAGAGGAGTG 57.488 34.615 0.00 0.00 0.00 3.51
561 1033 6.586344 TGGCTCCTATTCAAATTACAGAGAG 58.414 40.000 0.00 0.00 0.00 3.20
579 1051 5.363580 TGGATTTTAAATTGGATCTGGCTCC 59.636 40.000 0.00 0.00 35.74 4.70
758 1234 7.646526 CCATGTGATGCAAATTAGATTAGTGTG 59.353 37.037 0.00 0.00 0.00 3.82
768 1244 9.421806 CTTTTCTAAACCATGTGATGCAAATTA 57.578 29.630 0.00 0.00 0.00 1.40
815 1291 9.896645 TGCTATGACTTTCAGAAGAATAGAAAT 57.103 29.630 13.02 0.00 36.39 2.17
867 1344 8.937634 ATTTCAAATATTGGAATGTTGAGCTC 57.062 30.769 6.82 6.82 37.47 4.09
869 1346 8.937634 AGATTTCAAATATTGGAATGTTGAGC 57.062 30.769 6.10 0.00 38.96 4.26
874 1351 9.452287 CCCAAAAGATTTCAAATATTGGAATGT 57.548 29.630 17.51 0.00 38.96 2.71
875 1352 9.669887 TCCCAAAAGATTTCAAATATTGGAATG 57.330 29.630 17.51 1.11 38.96 2.67
878 1355 8.824783 ACATCCCAAAAGATTTCAAATATTGGA 58.175 29.630 17.51 9.38 38.44 3.53
883 1360 9.921637 GTGTAACATCCCAAAAGATTTCAAATA 57.078 29.630 0.00 0.00 36.32 1.40
1005 1534 5.637810 TCGGCTCACTATTTTTCACTTACTG 59.362 40.000 0.00 0.00 0.00 2.74
1039 1568 1.153046 CATACCGGTTGCGGGGAAT 60.153 57.895 15.04 0.00 0.00 3.01
1141 1671 3.827898 CGGGAGGAGAGCGTGGAC 61.828 72.222 0.00 0.00 0.00 4.02
1228 1758 3.755628 GCGGCGTACCACTGGAGA 61.756 66.667 9.37 0.00 34.57 3.71
1369 1899 1.381463 GAGCGGTAGGAGGAGGGTT 60.381 63.158 0.00 0.00 0.00 4.11
1379 1909 1.608717 AAGGAGCACAGGAGCGGTAG 61.609 60.000 0.00 0.00 40.15 3.18
1450 1980 2.802792 CGGAAGGACGGCGATACA 59.197 61.111 16.62 0.00 0.00 2.29
1453 1983 4.208686 GAGCGGAAGGACGGCGAT 62.209 66.667 16.62 0.00 46.94 4.58
1807 2337 1.456145 CCCAAGCATGCATAGCCCA 60.456 57.895 21.98 0.00 0.00 5.36
1843 2373 1.067295 TCATCCTGTCCACAAGCCTT 58.933 50.000 0.00 0.00 0.00 4.35
1996 2526 2.489329 CAAAAGACATCCGCCAATCACT 59.511 45.455 0.00 0.00 0.00 3.41
2041 2571 6.021672 TGATCCCATTATCTCATACAGCTCT 58.978 40.000 0.00 0.00 0.00 4.09
2264 2794 4.178540 CTCAAGCCATTTGCCAACATTAG 58.821 43.478 0.00 0.00 42.71 1.73
2296 2826 8.362639 GCATAAATCATTCCATTGTATCCTTGT 58.637 33.333 0.00 0.00 0.00 3.16
2357 2887 4.020396 ACTCTTCATCTCTTGCATGAGTGT 60.020 41.667 24.31 14.33 35.68 3.55
2515 3045 5.556355 ACAGTGCATGAATGAGTGTATTG 57.444 39.130 0.00 0.00 0.00 1.90
2617 3147 7.502226 CACAGGGCTTTAATCAGACCATTATAA 59.498 37.037 1.83 0.00 46.00 0.98
2975 3505 9.565090 TCTGTTTAGAAGCATATTAGCATCATT 57.435 29.630 0.00 0.00 34.86 2.57
2980 3510 6.348498 TGCTCTGTTTAGAAGCATATTAGCA 58.652 36.000 0.00 0.00 34.44 3.49
3085 3615 0.738762 GCCCTTTAACCTCGTCGGAC 60.739 60.000 0.00 0.00 36.31 4.79
3098 3628 5.702209 CAGCAAACAGAAATTAATGCCCTTT 59.298 36.000 0.00 0.00 34.44 3.11
3115 3646 4.274950 ACCAACATACAGTACACAGCAAAC 59.725 41.667 0.00 0.00 0.00 2.93
3164 3696 5.414360 TCTGATCTTCACAACATCTGTAGC 58.586 41.667 0.00 0.00 36.10 3.58
3178 3710 2.220313 GAGCTGCCCATTCTGATCTTC 58.780 52.381 0.00 0.00 0.00 2.87
3343 3875 5.702622 TCTAGCGAATTTCAAATGAGACG 57.297 39.130 0.00 0.00 0.00 4.18
3476 4019 2.682155 GACAGAGGGAGTCCATCAAC 57.318 55.000 24.93 11.92 34.83 3.18
3493 4036 8.876275 TGTAATAACGTCTTGTATTATGGGAC 57.124 34.615 0.00 0.00 0.00 4.46
3494 4037 9.701098 GATGTAATAACGTCTTGTATTATGGGA 57.299 33.333 0.00 0.00 38.41 4.37
3495 4038 8.932791 GGATGTAATAACGTCTTGTATTATGGG 58.067 37.037 0.00 0.00 40.82 4.00
3496 4039 9.483916 TGGATGTAATAACGTCTTGTATTATGG 57.516 33.333 0.00 0.00 40.82 2.74
3503 4046 8.826710 CACATATTGGATGTAATAACGTCTTGT 58.173 33.333 0.00 0.00 40.82 3.16
3504 4047 9.040939 TCACATATTGGATGTAATAACGTCTTG 57.959 33.333 0.00 0.00 40.82 3.02
3505 4048 9.261180 CTCACATATTGGATGTAATAACGTCTT 57.739 33.333 0.00 0.00 40.82 3.01
3506 4049 8.421784 ACTCACATATTGGATGTAATAACGTCT 58.578 33.333 0.00 0.00 40.82 4.18
3507 4050 8.589335 ACTCACATATTGGATGTAATAACGTC 57.411 34.615 0.00 0.00 40.37 4.34
3545 4088 8.705594 CCTCCGTCCCATAATATAAGATGTTAT 58.294 37.037 0.29 0.29 33.25 1.89
3546 4089 7.125204 CCCTCCGTCCCATAATATAAGATGTTA 59.875 40.741 0.00 0.00 0.00 2.41
3547 4090 6.070194 CCCTCCGTCCCATAATATAAGATGTT 60.070 42.308 0.00 0.00 0.00 2.71
3548 4091 5.425539 CCCTCCGTCCCATAATATAAGATGT 59.574 44.000 0.00 0.00 0.00 3.06
3549 4092 5.661312 TCCCTCCGTCCCATAATATAAGATG 59.339 44.000 0.00 0.00 0.00 2.90
3550 4093 5.850278 TCCCTCCGTCCCATAATATAAGAT 58.150 41.667 0.00 0.00 0.00 2.40
3551 4094 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3552 4095 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3553 4096 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3554 4097 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3555 4098 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3556 4099 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3557 4100 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3558 4101 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3559 4102 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3560 4103 1.133544 GTACTACTCCCTCCGTCCCAT 60.134 57.143 0.00 0.00 0.00 4.00
3561 4104 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
3562 4105 0.550432 AGTACTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
3563 4106 2.433662 AAGTACTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
3564 4107 4.265073 TGTTAAGTACTACTCCCTCCGTC 58.735 47.826 0.00 0.00 0.00 4.79
3565 4108 4.018960 TCTGTTAAGTACTACTCCCTCCGT 60.019 45.833 0.00 0.00 0.00 4.69
3566 4109 4.335037 GTCTGTTAAGTACTACTCCCTCCG 59.665 50.000 0.00 0.00 0.00 4.63
3567 4110 5.508567 AGTCTGTTAAGTACTACTCCCTCC 58.491 45.833 0.00 0.00 0.00 4.30
3568 4111 6.625520 GCAAGTCTGTTAAGTACTACTCCCTC 60.626 46.154 0.00 0.00 0.00 4.30
3569 4112 5.185442 GCAAGTCTGTTAAGTACTACTCCCT 59.815 44.000 0.00 0.00 0.00 4.20
3570 4113 5.409211 GCAAGTCTGTTAAGTACTACTCCC 58.591 45.833 0.00 0.00 0.00 4.30
3571 4114 5.185442 AGGCAAGTCTGTTAAGTACTACTCC 59.815 44.000 0.00 0.00 0.00 3.85
3572 4115 6.270156 AGGCAAGTCTGTTAAGTACTACTC 57.730 41.667 0.00 0.00 0.00 2.59
3573 4116 7.771927 TTAGGCAAGTCTGTTAAGTACTACT 57.228 36.000 0.00 0.00 0.00 2.57
3616 4160 0.821301 TTTGTGAATGCTGGTGGCGA 60.821 50.000 0.00 0.00 45.43 5.54
3656 4203 4.462133 TCAACAAGGGGAAAATGTTACGA 58.538 39.130 0.00 0.00 35.63 3.43
3667 4227 3.534357 TTTATTGGCTCAACAAGGGGA 57.466 42.857 0.00 0.00 33.23 4.81
3782 4565 7.646526 CCGTAGATGTCGTAATATTGTGAGAAA 59.353 37.037 0.00 0.00 0.00 2.52
3828 4620 0.527817 CAACACCGGCGATAGTCTCC 60.528 60.000 9.30 0.00 39.78 3.71
3855 4648 2.292257 ACACTGAGCTATGGAGGTGGTA 60.292 50.000 0.00 0.00 32.11 3.25
3941 4738 2.119495 ACGTAGCCTGGAATGAGGAAT 58.881 47.619 0.00 0.00 34.69 3.01
3960 4757 4.293415 CTGCTTTTGATCAGAACCAACAC 58.707 43.478 0.00 0.00 32.26 3.32
4049 4846 5.941733 TGTGTAAGCTGCATATTCTTTGTG 58.058 37.500 1.02 0.00 0.00 3.33
4050 4847 6.573664 TTGTGTAAGCTGCATATTCTTTGT 57.426 33.333 1.02 0.00 0.00 2.83
4051 4848 7.307694 TCTTTGTGTAAGCTGCATATTCTTTG 58.692 34.615 1.02 0.00 33.66 2.77
4052 4849 7.452880 TCTTTGTGTAAGCTGCATATTCTTT 57.547 32.000 1.02 0.00 33.66 2.52
4053 4850 7.452880 TTCTTTGTGTAAGCTGCATATTCTT 57.547 32.000 1.02 0.00 33.66 2.52
4054 4851 7.636150 ATTCTTTGTGTAAGCTGCATATTCT 57.364 32.000 1.02 0.00 33.66 2.40
4057 4854 9.784531 ACTATATTCTTTGTGTAAGCTGCATAT 57.215 29.630 1.02 0.00 33.66 1.78
4059 4856 9.613428 TTACTATATTCTTTGTGTAAGCTGCAT 57.387 29.630 1.02 0.00 33.66 3.96
4060 4857 9.098355 CTTACTATATTCTTTGTGTAAGCTGCA 57.902 33.333 1.02 0.00 33.33 4.41
4065 4862 8.056571 GCACGCTTACTATATTCTTTGTGTAAG 58.943 37.037 0.00 0.00 39.54 2.34
4066 4863 7.546316 TGCACGCTTACTATATTCTTTGTGTAA 59.454 33.333 0.00 0.00 0.00 2.41
4353 5162 3.825328 AGTTGTGAGGCAAGAAAGTGAT 58.175 40.909 0.00 0.00 37.83 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.