Multiple sequence alignment - TraesCS2B01G187700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G187700 chr2B 100.000 3110 0 0 1 3110 163233388 163230279 0.000000e+00 5744.0
1 TraesCS2B01G187700 chr2B 100.000 133 0 0 2248 2380 39373193 39373325 2.400000e-61 246.0
2 TraesCS2B01G187700 chr2B 98.020 101 0 2 2589 2689 39373318 39373416 1.150000e-39 174.0
3 TraesCS2B01G187700 chr2B 98.969 97 0 1 2589 2685 551636566 551636661 4.120000e-39 172.0
4 TraesCS2B01G187700 chr2D 95.051 2263 89 11 1 2245 112867200 112864943 0.000000e+00 3537.0
5 TraesCS2B01G187700 chr2D 91.475 434 13 4 2682 3110 112864938 112864524 2.690000e-160 575.0
6 TraesCS2B01G187700 chr2D 72.047 254 55 15 51 295 535289244 535289490 9.310000e-06 62.1
7 TraesCS2B01G187700 chr2A 93.659 2255 108 19 1 2242 114302514 114300282 0.000000e+00 3339.0
8 TraesCS2B01G187700 chr2A 79.814 644 117 12 8 642 684904810 684904171 1.020000e-124 457.0
9 TraesCS2B01G187700 chr2A 85.401 411 23 8 2682 3065 114300274 114299874 2.910000e-105 392.0
10 TraesCS2B01G187700 chr2A 80.296 203 39 1 415 617 49503645 49503846 5.370000e-33 152.0
11 TraesCS2B01G187700 chr4A 81.169 616 98 17 35 639 437498795 437499403 2.170000e-131 479.0
12 TraesCS2B01G187700 chr4A 99.107 224 2 0 2375 2598 584460090 584459867 1.340000e-108 403.0
13 TraesCS2B01G187700 chr4A 80.556 252 45 4 1 249 477793702 477793452 1.140000e-44 191.0
14 TraesCS2B01G187700 chr4D 78.090 712 118 25 80 776 488461632 488462320 1.730000e-112 416.0
15 TraesCS2B01G187700 chr4D 98.261 230 4 0 2368 2597 3719841 3719612 1.340000e-108 403.0
16 TraesCS2B01G187700 chr5A 97.521 242 4 2 2360 2599 328805272 328805513 2.230000e-111 412.0
17 TraesCS2B01G187700 chr5A 99.265 136 1 0 2245 2380 569458026 569457891 2.400000e-61 246.0
18 TraesCS2B01G187700 chr5A 71.903 783 164 41 35 775 647608721 647607953 3.190000e-40 176.0
19 TraesCS2B01G187700 chr6B 100.000 221 0 0 2376 2596 127754118 127754338 2.890000e-110 409.0
20 TraesCS2B01G187700 chr6B 99.270 137 1 0 2244 2380 26081814 26081678 6.660000e-62 248.0
21 TraesCS2B01G187700 chr6B 100.000 133 0 0 2248 2380 127754337 127754205 2.400000e-61 246.0
22 TraesCS2B01G187700 chr7B 99.550 222 1 0 2376 2597 23409449 23409670 3.730000e-109 405.0
23 TraesCS2B01G187700 chr3B 99.550 222 1 0 2376 2597 542749391 542749170 3.730000e-109 405.0
24 TraesCS2B01G187700 chr3B 98.000 100 1 1 2589 2688 69370370 69370468 4.120000e-39 172.0
25 TraesCS2B01G187700 chr3B 95.455 110 2 3 2589 2696 816483264 816483372 4.120000e-39 172.0
26 TraesCS2B01G187700 chr1A 99.550 222 1 0 2377 2598 532321286 532321507 3.730000e-109 405.0
27 TraesCS2B01G187700 chr1A 97.087 103 1 2 2589 2691 471731419 471731519 4.120000e-39 172.0
28 TraesCS2B01G187700 chr1B 98.678 227 3 0 2377 2603 561755673 561755447 1.340000e-108 403.0
29 TraesCS2B01G187700 chr1B 97.872 141 2 1 2241 2380 561755447 561755587 3.100000e-60 243.0
30 TraesCS2B01G187700 chr1B 77.157 394 71 14 35 424 350723655 350723277 8.740000e-51 211.0
31 TraesCS2B01G187700 chr5B 98.246 228 4 0 2374 2601 253187145 253187372 1.740000e-107 399.0
32 TraesCS2B01G187700 chr7A 99.270 137 1 0 2244 2380 545058231 545058367 6.660000e-62 248.0
33 TraesCS2B01G187700 chr7A 98.496 133 2 0 2248 2380 725204579 725204711 5.190000e-58 235.0
34 TraesCS2B01G187700 chr7A 96.262 107 1 3 2589 2695 88320720 88320823 4.120000e-39 172.0
35 TraesCS2B01G187700 chr7A 79.167 240 43 7 391 628 287210458 287210692 3.210000e-35 159.0
36 TraesCS2B01G187700 chr7D 100.000 133 0 0 2248 2380 593028571 593028703 2.400000e-61 246.0
37 TraesCS2B01G187700 chr7D 84.513 226 28 5 3 226 45147958 45148178 1.880000e-52 217.0
38 TraesCS2B01G187700 chr7D 74.074 432 99 12 208 631 580761717 580762143 6.900000e-37 165.0
39 TraesCS2B01G187700 chr7D 81.579 152 26 2 481 631 608889620 608889470 1.170000e-24 124.0
40 TraesCS2B01G187700 chr5D 73.913 644 150 17 6 639 339722251 339722886 3.100000e-60 243.0
41 TraesCS2B01G187700 chr5D 76.566 431 75 12 3 420 118220663 118221080 2.430000e-51 213.0
42 TraesCS2B01G187700 chr5D 72.810 548 128 20 102 639 185163563 185163027 1.920000e-37 167.0
43 TraesCS2B01G187700 chr5D 78.008 241 51 2 391 630 487427049 487427288 1.930000e-32 150.0
44 TraesCS2B01G187700 chr5D 78.873 213 40 5 410 620 432945574 432945783 4.180000e-29 139.0
45 TraesCS2B01G187700 chr6A 95.333 150 5 2 2232 2380 616878785 616878637 1.440000e-58 237.0
46 TraesCS2B01G187700 chr6A 97.087 103 1 2 2589 2690 552834659 552834760 4.120000e-39 172.0
47 TraesCS2B01G187700 chr6A 97.059 102 1 2 2589 2690 531399288 531399387 1.480000e-38 171.0
48 TraesCS2B01G187700 chr6D 80.247 243 40 5 1 236 108191105 108191346 3.190000e-40 176.0
49 TraesCS2B01G187700 chr6D 72.998 537 117 27 102 628 61598538 61599056 2.480000e-36 163.0
50 TraesCS2B01G187700 chr3A 98.980 98 0 1 2589 2686 149722645 149722741 1.150000e-39 174.0
51 TraesCS2B01G187700 chr3A 74.817 409 75 17 391 773 581621293 581620887 3.210000e-35 159.0
52 TraesCS2B01G187700 chr3D 77.670 309 47 20 35 334 548962510 548962215 5.330000e-38 169.0
53 TraesCS2B01G187700 chr4B 83.708 178 26 3 3 178 651510532 651510708 6.900000e-37 165.0
54 TraesCS2B01G187700 chr1D 72.470 494 107 28 143 620 6466327 6466807 7.000000e-27 132.0
55 TraesCS2B01G187700 chr1D 73.659 410 78 18 392 773 168330669 168330262 7.000000e-27 132.0
56 TraesCS2B01G187700 chr1D 84.286 70 10 1 560 628 181875 181944 2.000000e-07 67.6
57 TraesCS2B01G187700 chr1D 87.719 57 6 1 573 628 165661 165717 7.200000e-07 65.8
58 TraesCS2B01G187700 chrUn 78.846 156 29 3 470 623 34296083 34295930 5.490000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G187700 chr2B 163230279 163233388 3109 True 5744.0 5744 100.000 1 3110 1 chr2B.!!$R1 3109
1 TraesCS2B01G187700 chr2D 112864524 112867200 2676 True 2056.0 3537 93.263 1 3110 2 chr2D.!!$R1 3109
2 TraesCS2B01G187700 chr2A 114299874 114302514 2640 True 1865.5 3339 89.530 1 3065 2 chr2A.!!$R2 3064
3 TraesCS2B01G187700 chr2A 684904171 684904810 639 True 457.0 457 79.814 8 642 1 chr2A.!!$R1 634
4 TraesCS2B01G187700 chr4A 437498795 437499403 608 False 479.0 479 81.169 35 639 1 chr4A.!!$F1 604
5 TraesCS2B01G187700 chr4D 488461632 488462320 688 False 416.0 416 78.090 80 776 1 chr4D.!!$F1 696
6 TraesCS2B01G187700 chr5D 339722251 339722886 635 False 243.0 243 73.913 6 639 1 chr5D.!!$F2 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 876 0.106519 AAGCCAGCAGTCAACCTTGT 60.107 50.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2371 2420 0.179009 CGGACGGAGGGAGTATACCA 60.179 60.0 0.0 0.0 0.0 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.622312 GTTACGGAGTTGGGTCTTCCT 59.378 52.381 0.00 0.00 37.78 3.36
78 80 2.649831 GTGTCGACACCTCCTACCA 58.350 57.895 33.62 0.00 40.85 3.25
152 154 2.561858 GACACCTTTTACTCCTCCGACT 59.438 50.000 0.00 0.00 0.00 4.18
506 516 1.200716 TGAAGATGTCGTCGTGGGTAC 59.799 52.381 0.00 0.00 0.00 3.34
641 665 1.937899 GGCGTAGTGTTGTGTTGTCTT 59.062 47.619 0.00 0.00 0.00 3.01
696 732 4.884668 ATCCTCGGATCGGCTTTATAAA 57.115 40.909 0.00 0.00 0.00 1.40
702 738 3.881089 CGGATCGGCTTTATAAAAGGGTT 59.119 43.478 0.00 0.00 0.00 4.11
721 757 5.103215 AGGGTTACCTCAGTATCCTGTATCA 60.103 44.000 0.00 0.00 46.95 2.15
726 762 5.141182 ACCTCAGTATCCTGTATCATTCGT 58.859 41.667 0.00 0.00 39.82 3.85
738 774 6.193514 TGTATCATTCGTTCGTGTACCTTA 57.806 37.500 0.00 0.00 0.00 2.69
742 778 5.104374 TCATTCGTTCGTGTACCTTATTCC 58.896 41.667 0.00 0.00 0.00 3.01
775 814 7.733402 TTTATATATAAAACGCGGGAAAGCT 57.267 32.000 12.47 0.00 30.48 3.74
837 876 0.106519 AAGCCAGCAGTCAACCTTGT 60.107 50.000 0.00 0.00 0.00 3.16
909 948 2.286772 CGAAAGGAAACCGTGTCAAAGG 60.287 50.000 0.00 0.00 0.00 3.11
969 1008 1.068434 CAACCCAATTCACACACACCC 59.932 52.381 0.00 0.00 0.00 4.61
970 1009 0.260230 ACCCAATTCACACACACCCA 59.740 50.000 0.00 0.00 0.00 4.51
971 1010 0.673437 CCCAATTCACACACACCCAC 59.327 55.000 0.00 0.00 0.00 4.61
972 1011 1.397672 CCAATTCACACACACCCACA 58.602 50.000 0.00 0.00 0.00 4.17
1192 1231 1.812686 CGACCCCAAGAACCTGACGA 61.813 60.000 0.00 0.00 0.00 4.20
1428 1467 2.043852 TCCCTCCTCCACGAGCTC 60.044 66.667 2.73 2.73 0.00 4.09
1445 1484 1.876453 CTCGACGTCAGCAACAACCG 61.876 60.000 17.16 0.00 0.00 4.44
1585 1624 1.792367 CGCTCTTCATCAACGACAACA 59.208 47.619 0.00 0.00 0.00 3.33
1608 1647 2.261671 GACTTCGAGCTGCCGGAA 59.738 61.111 5.05 0.00 0.00 4.30
1797 1836 1.956170 CGTGCTGGACGTGAGCTTT 60.956 57.895 13.79 0.00 43.50 3.51
2138 2180 9.218440 GAAATCATTCATTTGGTGGTGTAAAAT 57.782 29.630 0.00 0.00 34.60 1.82
2255 2304 9.722184 TGTAGACATACATGATACTACTACCTC 57.278 37.037 0.00 0.00 36.98 3.85
2256 2305 9.165035 GTAGACATACATGATACTACTACCTCC 57.835 40.741 0.00 0.00 34.03 4.30
2257 2306 6.879993 AGACATACATGATACTACTACCTCCG 59.120 42.308 0.00 0.00 0.00 4.63
2258 2307 6.540995 ACATACATGATACTACTACCTCCGT 58.459 40.000 0.00 0.00 0.00 4.69
2259 2308 6.654161 ACATACATGATACTACTACCTCCGTC 59.346 42.308 0.00 0.00 0.00 4.79
2260 2309 4.396522 ACATGATACTACTACCTCCGTCC 58.603 47.826 0.00 0.00 0.00 4.79
2261 2310 3.498774 TGATACTACTACCTCCGTCCC 57.501 52.381 0.00 0.00 0.00 4.46
2262 2311 2.224378 TGATACTACTACCTCCGTCCCG 60.224 54.545 0.00 0.00 0.00 5.14
2273 2322 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
2274 2323 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
2275 2324 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
2276 2325 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
2277 2326 3.378339 CGTCCCGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
2278 2327 3.378339 GTCCCGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
2279 2328 2.132762 CCCGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
2280 2329 1.784856 CCGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
2281 2330 2.456989 CGGTGTATAAGTCATTCGCGT 58.543 47.619 5.77 0.00 0.00 6.01
2282 2331 3.548616 CCGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
2283 2332 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
2284 2333 4.604976 GGTGTATAAGTCATTCGCGTAGT 58.395 43.478 5.77 0.00 0.00 2.73
2285 2334 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
2286 2335 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
2287 2336 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
2288 2337 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
2289 2338 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
2290 2339 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
2291 2340 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
2292 2341 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
2293 2342 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
2294 2343 1.725641 TTCGCGTAGTTCTAGGTCGA 58.274 50.000 5.77 11.56 0.00 4.20
2295 2344 1.945387 TCGCGTAGTTCTAGGTCGAT 58.055 50.000 5.77 0.00 0.00 3.59
2296 2345 3.097877 TCGCGTAGTTCTAGGTCGATA 57.902 47.619 5.77 0.00 0.00 2.92
2297 2346 3.457234 TCGCGTAGTTCTAGGTCGATAA 58.543 45.455 5.77 0.00 0.00 1.75
2298 2347 4.060900 TCGCGTAGTTCTAGGTCGATAAT 58.939 43.478 5.77 0.00 0.00 1.28
2299 2348 4.512944 TCGCGTAGTTCTAGGTCGATAATT 59.487 41.667 5.77 0.00 0.00 1.40
2300 2349 5.008019 TCGCGTAGTTCTAGGTCGATAATTT 59.992 40.000 5.77 0.00 0.00 1.82
2301 2350 6.202762 TCGCGTAGTTCTAGGTCGATAATTTA 59.797 38.462 5.77 0.00 0.00 1.40
2302 2351 6.852853 CGCGTAGTTCTAGGTCGATAATTTAA 59.147 38.462 0.00 0.00 0.00 1.52
2303 2352 7.149224 CGCGTAGTTCTAGGTCGATAATTTAAC 60.149 40.741 0.00 0.00 0.00 2.01
2304 2353 7.859875 GCGTAGTTCTAGGTCGATAATTTAACT 59.140 37.037 0.00 0.00 0.00 2.24
2362 2411 9.706691 ATATATTTAGAAACTACATCCGTGTGG 57.293 33.333 0.00 0.00 42.04 4.17
2378 2427 6.985117 TCCGTGTGGAAATATAGTGGTATAC 58.015 40.000 0.00 0.00 42.85 1.47
2379 2428 6.779049 TCCGTGTGGAAATATAGTGGTATACT 59.221 38.462 2.25 0.00 42.85 2.12
2380 2429 7.040201 TCCGTGTGGAAATATAGTGGTATACTC 60.040 40.741 2.25 0.00 42.85 2.59
2381 2430 7.088905 CGTGTGGAAATATAGTGGTATACTCC 58.911 42.308 2.25 0.00 40.89 3.85
2382 2431 7.384477 GTGTGGAAATATAGTGGTATACTCCC 58.616 42.308 2.25 0.00 40.89 4.30
2383 2432 7.234988 GTGTGGAAATATAGTGGTATACTCCCT 59.765 40.741 2.25 0.00 40.89 4.20
2384 2433 7.453752 TGTGGAAATATAGTGGTATACTCCCTC 59.546 40.741 2.25 0.00 40.89 4.30
2385 2434 6.958192 TGGAAATATAGTGGTATACTCCCTCC 59.042 42.308 2.25 0.00 40.89 4.30
2386 2435 6.096564 GGAAATATAGTGGTATACTCCCTCCG 59.903 46.154 2.25 0.00 40.89 4.63
2387 2436 5.793034 ATATAGTGGTATACTCCCTCCGT 57.207 43.478 2.25 0.00 40.89 4.69
2388 2437 2.361643 AGTGGTATACTCCCTCCGTC 57.638 55.000 2.25 0.00 33.17 4.79
2389 2438 1.133544 AGTGGTATACTCCCTCCGTCC 60.134 57.143 2.25 0.00 33.17 4.79
2390 2439 0.179009 TGGTATACTCCCTCCGTCCG 60.179 60.000 2.25 0.00 0.00 4.79
2391 2440 0.892814 GGTATACTCCCTCCGTCCGG 60.893 65.000 2.25 0.00 0.00 5.14
2392 2441 0.892814 GTATACTCCCTCCGTCCGGG 60.893 65.000 0.00 0.00 43.38 5.73
2393 2442 1.355718 TATACTCCCTCCGTCCGGGT 61.356 60.000 0.00 0.00 42.56 5.28
2394 2443 2.923634 ATACTCCCTCCGTCCGGGTG 62.924 65.000 0.00 0.00 42.56 4.61
2396 2445 3.650298 CTCCCTCCGTCCGGGTGTA 62.650 68.421 0.00 0.00 42.56 2.90
2397 2446 2.443390 CCCTCCGTCCGGGTGTAT 60.443 66.667 0.00 0.00 36.91 2.29
2398 2447 1.152694 CCCTCCGTCCGGGTGTATA 60.153 63.158 0.00 0.00 36.91 1.47
2399 2448 0.756442 CCCTCCGTCCGGGTGTATAA 60.756 60.000 0.00 0.00 36.91 0.98
2400 2449 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
2401 2450 1.396653 CTCCGTCCGGGTGTATAAGT 58.603 55.000 0.00 0.00 37.00 2.24
2402 2451 1.336125 CTCCGTCCGGGTGTATAAGTC 59.664 57.143 0.00 0.00 37.00 3.01
2403 2452 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
2404 2453 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
2405 2454 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
2406 2455 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
2407 2456 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
2408 2457 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
2409 2458 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
2410 2459 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
2411 2460 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
2412 2461 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
2413 2462 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
2414 2463 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
2415 2464 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
2416 2465 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
2417 2466 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
2418 2467 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
2419 2468 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
2420 2469 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
2421 2470 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
2422 2471 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
2423 2472 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
2424 2473 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
2425 2474 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
2426 2475 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
2427 2476 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
2428 2477 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
2429 2478 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
2430 2479 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
2431 2480 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
2432 2481 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
2433 2482 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
2434 2483 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
2435 2484 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
2436 2485 6.098982 AGTTCTAGGTCATCGATTTGAGGAAT 59.901 38.462 0.00 0.00 39.46 3.01
2437 2486 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
2438 2487 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
2439 2488 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
2440 2489 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
2441 2490 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
2443 2492 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
2444 2493 9.831737 GGTCATCGATTTGAGGAATTAAATATG 57.168 33.333 0.00 0.00 39.46 1.78
2485 2534 8.882415 AAAGTATACCACTATATTTCCACACG 57.118 34.615 0.00 0.00 36.04 4.49
2486 2535 6.989659 AGTATACCACTATATTTCCACACGG 58.010 40.000 0.00 0.00 34.98 4.94
2487 2536 6.779049 AGTATACCACTATATTTCCACACGGA 59.221 38.462 0.00 0.00 35.86 4.69
2488 2537 6.681729 ATACCACTATATTTCCACACGGAT 57.318 37.500 0.00 0.00 42.41 4.18
2489 2538 4.703897 ACCACTATATTTCCACACGGATG 58.296 43.478 0.00 0.00 42.41 3.51
2490 2539 4.163458 ACCACTATATTTCCACACGGATGT 59.837 41.667 0.00 0.00 42.41 3.06
2491 2540 5.364446 ACCACTATATTTCCACACGGATGTA 59.636 40.000 0.00 0.00 42.41 2.29
2492 2541 5.926542 CCACTATATTTCCACACGGATGTAG 59.073 44.000 0.00 0.00 42.41 2.74
2493 2542 6.462487 CCACTATATTTCCACACGGATGTAGT 60.462 42.308 0.00 0.00 42.41 2.73
2494 2543 6.984474 CACTATATTTCCACACGGATGTAGTT 59.016 38.462 0.00 0.00 42.41 2.24
2495 2544 7.494625 CACTATATTTCCACACGGATGTAGTTT 59.505 37.037 0.00 0.00 42.41 2.66
2496 2545 6.920569 ATATTTCCACACGGATGTAGTTTC 57.079 37.500 0.00 0.00 42.41 2.78
2497 2546 4.345859 TTTCCACACGGATGTAGTTTCT 57.654 40.909 0.00 0.00 42.41 2.52
2498 2547 5.471556 TTTCCACACGGATGTAGTTTCTA 57.528 39.130 0.00 0.00 42.41 2.10
2499 2548 5.471556 TTCCACACGGATGTAGTTTCTAA 57.528 39.130 0.00 0.00 42.41 2.10
2500 2549 5.471556 TCCACACGGATGTAGTTTCTAAA 57.528 39.130 0.00 0.00 36.72 1.85
2501 2550 6.045072 TCCACACGGATGTAGTTTCTAAAT 57.955 37.500 0.00 0.00 36.72 1.40
2502 2551 7.172868 TCCACACGGATGTAGTTTCTAAATA 57.827 36.000 0.00 0.00 36.72 1.40
2503 2552 7.788026 TCCACACGGATGTAGTTTCTAAATAT 58.212 34.615 0.00 0.00 36.72 1.28
2504 2553 8.916062 TCCACACGGATGTAGTTTCTAAATATA 58.084 33.333 0.00 0.00 36.72 0.86
2505 2554 9.706691 CCACACGGATGTAGTTTCTAAATATAT 57.293 33.333 0.00 0.00 36.72 0.86
2563 2612 7.859875 AGTTAAATTATCGACCTAGAACTACGC 59.140 37.037 0.00 0.00 0.00 4.42
2564 2613 3.867055 TTATCGACCTAGAACTACGCG 57.133 47.619 3.53 3.53 0.00 6.01
2565 2614 1.945387 ATCGACCTAGAACTACGCGA 58.055 50.000 15.93 0.00 0.00 5.87
2566 2615 1.725641 TCGACCTAGAACTACGCGAA 58.274 50.000 15.93 0.00 0.00 4.70
2567 2616 2.283298 TCGACCTAGAACTACGCGAAT 58.717 47.619 15.93 0.00 0.00 3.34
2568 2617 2.031314 TCGACCTAGAACTACGCGAATG 59.969 50.000 15.93 4.47 0.00 2.67
2569 2618 2.031314 CGACCTAGAACTACGCGAATGA 59.969 50.000 15.93 0.00 0.00 2.57
2570 2619 3.361414 GACCTAGAACTACGCGAATGAC 58.639 50.000 15.93 0.66 0.00 3.06
2571 2620 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
2572 2621 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
2573 2622 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
2574 2623 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
2575 2624 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
2576 2625 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
2577 2626 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
2578 2627 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
2579 2628 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
2580 2629 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
2581 2630 1.784856 CGCGAATGACTTATACACCGG 59.215 52.381 0.00 0.00 0.00 5.28
2582 2631 2.132762 GCGAATGACTTATACACCGGG 58.867 52.381 6.32 0.00 0.00 5.73
2583 2632 2.223876 GCGAATGACTTATACACCGGGA 60.224 50.000 6.32 0.00 0.00 5.14
2584 2633 3.378339 CGAATGACTTATACACCGGGAC 58.622 50.000 6.32 0.00 0.00 4.46
2600 2649 3.516981 GGGACGGAGGTAGTACTTTTC 57.483 52.381 0.00 0.00 0.00 2.29
2601 2650 2.827921 GGGACGGAGGTAGTACTTTTCA 59.172 50.000 0.00 0.00 0.00 2.69
2602 2651 3.450096 GGGACGGAGGTAGTACTTTTCAT 59.550 47.826 0.00 0.00 0.00 2.57
2603 2652 4.430908 GGACGGAGGTAGTACTTTTCATG 58.569 47.826 0.00 0.00 0.00 3.07
2604 2653 4.159135 GGACGGAGGTAGTACTTTTCATGA 59.841 45.833 0.00 0.00 0.00 3.07
2605 2654 5.069501 ACGGAGGTAGTACTTTTCATGAC 57.930 43.478 0.00 0.00 0.00 3.06
2606 2655 4.525487 ACGGAGGTAGTACTTTTCATGACA 59.475 41.667 0.00 0.00 0.00 3.58
2607 2656 5.187186 ACGGAGGTAGTACTTTTCATGACAT 59.813 40.000 0.00 0.00 0.00 3.06
2608 2657 6.379133 ACGGAGGTAGTACTTTTCATGACATA 59.621 38.462 0.00 0.00 0.00 2.29
2609 2658 7.069578 ACGGAGGTAGTACTTTTCATGACATAT 59.930 37.037 0.00 0.00 0.00 1.78
2610 2659 8.573885 CGGAGGTAGTACTTTTCATGACATATA 58.426 37.037 0.00 0.00 0.00 0.86
2640 2689 9.831737 CATATTTAATTCCTCAAATCGATGACC 57.168 33.333 0.00 0.00 0.00 4.02
2641 2690 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
2643 2692 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
2644 2693 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
2645 2694 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
2646 2695 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
2647 2696 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
2648 2697 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
2649 2698 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
2650 2699 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
2651 2700 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
2652 2701 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
2653 2702 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
2654 2703 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
2655 2704 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
2656 2705 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
2657 2706 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
2658 2707 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
2659 2708 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
2660 2709 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
2661 2710 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
2662 2711 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
2663 2712 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
2664 2713 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
2665 2714 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
2666 2715 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
2667 2716 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
2668 2717 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
2669 2718 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
2670 2719 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
2671 2720 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
2672 2721 3.378339 CGAATGACTTATACACCCGGAC 58.622 50.000 0.73 0.00 0.00 4.79
2673 2722 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
2674 2723 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
2675 2724 1.340893 TGACTTATACACCCGGACGGA 60.341 52.381 13.13 0.00 37.50 4.69
2676 2725 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
2677 2726 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
2694 2743 5.611374 ACGGAGGGAGTACATTATTGATTG 58.389 41.667 0.00 0.00 0.00 2.67
2763 2823 1.953559 TTCTTTCTTGTGCGACAGCT 58.046 45.000 0.00 0.00 45.42 4.24
2764 2824 2.812358 TCTTTCTTGTGCGACAGCTA 57.188 45.000 0.00 0.00 45.42 3.32
2765 2825 2.677199 TCTTTCTTGTGCGACAGCTAG 58.323 47.619 0.00 0.00 45.42 3.42
2766 2826 2.035961 TCTTTCTTGTGCGACAGCTAGT 59.964 45.455 0.00 0.00 45.42 2.57
2767 2827 2.065993 TTCTTGTGCGACAGCTAGTC 57.934 50.000 6.31 6.31 45.42 2.59
2768 2828 0.243907 TCTTGTGCGACAGCTAGTCC 59.756 55.000 9.71 5.00 44.66 3.85
2769 2829 0.244994 CTTGTGCGACAGCTAGTCCT 59.755 55.000 9.71 0.00 44.66 3.85
2770 2830 1.472878 CTTGTGCGACAGCTAGTCCTA 59.527 52.381 9.71 0.00 44.66 2.94
2771 2831 1.095600 TGTGCGACAGCTAGTCCTAG 58.904 55.000 9.71 0.00 44.66 3.02
2805 2865 6.414732 TGTTGGTGGAGAGATTATTACTTGG 58.585 40.000 0.00 0.00 0.00 3.61
2812 2878 9.262358 GTGGAGAGATTATTACTTGGTGTATTC 57.738 37.037 0.00 0.00 0.00 1.75
2927 3012 3.255888 GGCTTGAAAGGGAGTTAACCAAG 59.744 47.826 0.88 7.89 34.39 3.61
2928 3013 3.255888 GCTTGAAAGGGAGTTAACCAAGG 59.744 47.826 15.63 0.00 32.56 3.61
2929 3014 4.470602 CTTGAAAGGGAGTTAACCAAGGT 58.529 43.478 0.88 0.00 0.00 3.50
2930 3015 3.827722 TGAAAGGGAGTTAACCAAGGTG 58.172 45.455 0.88 0.00 0.00 4.00
2931 3016 3.203487 TGAAAGGGAGTTAACCAAGGTGT 59.797 43.478 0.88 0.00 0.00 4.16
2932 3017 3.965470 AAGGGAGTTAACCAAGGTGTT 57.035 42.857 0.88 0.00 0.00 3.32
2933 3018 5.104024 TGAAAGGGAGTTAACCAAGGTGTTA 60.104 40.000 0.88 0.00 0.00 2.41
2934 3019 5.391577 AAGGGAGTTAACCAAGGTGTTAA 57.608 39.130 0.88 0.00 38.13 2.01
2935 3020 5.391577 AGGGAGTTAACCAAGGTGTTAAA 57.608 39.130 0.88 0.00 41.09 1.52
3012 3097 4.985409 GGTCAAGGATGAGATGATAACGAC 59.015 45.833 0.00 0.00 35.88 4.34
3022 3107 6.337356 TGAGATGATAACGACAGTATTTGCA 58.663 36.000 0.00 0.00 0.00 4.08
3053 3138 2.287427 GGAGAAGAATCAATGCCATGCG 60.287 50.000 0.00 0.00 0.00 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.948719 GCCAGTCCCGGTGGAACA 61.949 66.667 13.59 0.00 44.07 3.18
78 80 2.555664 AGTCTGGATCAACACCTCCAT 58.444 47.619 0.00 0.00 40.66 3.41
152 154 1.819903 CATCATGATGCACCAACCACA 59.180 47.619 22.20 0.00 31.39 4.17
303 311 1.330655 CCGAGCCACCCACATCTAGT 61.331 60.000 0.00 0.00 0.00 2.57
372 382 1.480954 GGACAAGCTCGGTGAGGAATA 59.519 52.381 0.00 0.00 0.00 1.75
373 383 0.250513 GGACAAGCTCGGTGAGGAAT 59.749 55.000 0.00 0.00 0.00 3.01
451 461 1.632046 CCACAAGCGTCGCCGTTATT 61.632 55.000 14.86 0.00 36.15 1.40
468 478 0.107703 CAAGAAGATAGCGGCACCCA 60.108 55.000 1.45 0.00 0.00 4.51
510 520 2.583441 CCGGAGCCCTGTCACAGAA 61.583 63.158 6.30 0.00 32.44 3.02
569 580 1.745489 GAGGGAGAACGGCGCAAAT 60.745 57.895 10.83 0.00 0.00 2.32
641 665 3.368236 GCAAAACACTACGCAACCAAAAA 59.632 39.130 0.00 0.00 0.00 1.94
714 750 4.669318 AGGTACACGAACGAATGATACAG 58.331 43.478 0.14 0.00 0.00 2.74
721 757 4.107622 CGGAATAAGGTACACGAACGAAT 58.892 43.478 0.14 0.00 0.00 3.34
726 762 4.255833 ACAACGGAATAAGGTACACGAA 57.744 40.909 0.00 0.00 0.00 3.85
766 803 2.000447 CGAGGTTTTCTAGCTTTCCCG 59.000 52.381 0.00 0.00 33.94 5.14
775 814 9.111613 TGTATTCTTGTTTTTCGAGGTTTTCTA 57.888 29.630 0.00 0.00 0.00 2.10
807 846 0.398381 TGCTGGCTTTCCCACCTTTT 60.398 50.000 0.00 0.00 39.18 2.27
837 876 7.030768 CGTTCTGGGTTTCTTGTTTTCTTTTA 58.969 34.615 0.00 0.00 0.00 1.52
909 948 1.867363 ATATACAGGGGGAGGCGATC 58.133 55.000 0.00 0.00 0.00 3.69
969 1008 2.752354 TCTTTCTTTGGGTGTGTGTGTG 59.248 45.455 0.00 0.00 0.00 3.82
970 1009 2.752903 GTCTTTCTTTGGGTGTGTGTGT 59.247 45.455 0.00 0.00 0.00 3.72
971 1010 2.752354 TGTCTTTCTTTGGGTGTGTGTG 59.248 45.455 0.00 0.00 0.00 3.82
972 1011 2.752903 GTGTCTTTCTTTGGGTGTGTGT 59.247 45.455 0.00 0.00 0.00 3.72
1428 1467 2.544359 CGGTTGTTGCTGACGTCG 59.456 61.111 11.62 7.05 0.00 5.12
1608 1647 1.112916 CGGGGGAGTTGCCAAAGTTT 61.113 55.000 0.00 0.00 38.95 2.66
1797 1836 2.954684 CGTGCCCTGGAGCTGGTTA 61.955 63.158 0.00 0.00 0.00 2.85
1914 1953 2.594592 GTGAAGTTGGCCAGCCGT 60.595 61.111 16.95 4.31 39.42 5.68
2095 2134 0.179043 TTCCACTAGTGTTGCGCCAA 60.179 50.000 21.18 0.00 0.00 4.52
2103 2142 6.721208 ACCAAATGAATGATTTCCACTAGTGT 59.279 34.615 21.18 2.58 31.41 3.55
2138 2180 2.575532 GATGATTGAAATCTCCGCCCA 58.424 47.619 4.76 0.00 36.39 5.36
2257 2306 3.378339 CGAATGACTTATACACCGGGAC 58.622 50.000 6.32 0.00 0.00 4.46
2258 2307 2.223876 GCGAATGACTTATACACCGGGA 60.224 50.000 6.32 0.00 0.00 5.14
2259 2308 2.132762 GCGAATGACTTATACACCGGG 58.867 52.381 6.32 0.00 0.00 5.73
2260 2309 1.784856 CGCGAATGACTTATACACCGG 59.215 52.381 0.00 0.00 0.00 5.28
2261 2310 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
2262 2311 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
2263 2312 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
2264 2313 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
2265 2314 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
2266 2315 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
2267 2316 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
2268 2317 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
2269 2318 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
2270 2319 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
2271 2320 3.361414 GACCTAGAACTACGCGAATGAC 58.639 50.000 15.93 0.66 0.00 3.06
2272 2321 2.031314 CGACCTAGAACTACGCGAATGA 59.969 50.000 15.93 0.00 0.00 2.57
2273 2322 2.031314 TCGACCTAGAACTACGCGAATG 59.969 50.000 15.93 4.47 0.00 2.67
2274 2323 2.283298 TCGACCTAGAACTACGCGAAT 58.717 47.619 15.93 0.00 0.00 3.34
2275 2324 1.725641 TCGACCTAGAACTACGCGAA 58.274 50.000 15.93 0.00 0.00 4.70
2276 2325 1.945387 ATCGACCTAGAACTACGCGA 58.055 50.000 15.93 0.00 0.00 5.87
2277 2326 3.867055 TTATCGACCTAGAACTACGCG 57.133 47.619 3.53 3.53 0.00 6.01
2278 2327 7.859875 AGTTAAATTATCGACCTAGAACTACGC 59.140 37.037 0.00 0.00 0.00 4.42
2336 2385 9.706691 CCACACGGATGTAGTTTCTAAATATAT 57.293 33.333 0.00 0.00 36.72 0.86
2337 2386 8.916062 TCCACACGGATGTAGTTTCTAAATATA 58.084 33.333 0.00 0.00 36.72 0.86
2338 2387 7.788026 TCCACACGGATGTAGTTTCTAAATAT 58.212 34.615 0.00 0.00 36.72 1.28
2339 2388 7.172868 TCCACACGGATGTAGTTTCTAAATA 57.827 36.000 0.00 0.00 36.72 1.40
2340 2389 6.045072 TCCACACGGATGTAGTTTCTAAAT 57.955 37.500 0.00 0.00 36.72 1.40
2341 2390 5.471556 TCCACACGGATGTAGTTTCTAAA 57.528 39.130 0.00 0.00 36.72 1.85
2342 2391 5.471556 TTCCACACGGATGTAGTTTCTAA 57.528 39.130 0.00 0.00 42.41 2.10
2343 2392 5.471556 TTTCCACACGGATGTAGTTTCTA 57.528 39.130 0.00 0.00 42.41 2.10
2344 2393 4.345859 TTTCCACACGGATGTAGTTTCT 57.654 40.909 0.00 0.00 42.41 2.52
2345 2394 6.920569 ATATTTCCACACGGATGTAGTTTC 57.079 37.500 0.00 0.00 42.41 2.78
2346 2395 7.494625 CACTATATTTCCACACGGATGTAGTTT 59.505 37.037 0.00 0.00 42.41 2.66
2347 2396 6.984474 CACTATATTTCCACACGGATGTAGTT 59.016 38.462 0.00 0.00 42.41 2.24
2348 2397 6.462487 CCACTATATTTCCACACGGATGTAGT 60.462 42.308 0.00 0.00 42.41 2.73
2349 2398 5.926542 CCACTATATTTCCACACGGATGTAG 59.073 44.000 0.00 0.00 42.41 2.74
2350 2399 5.364446 ACCACTATATTTCCACACGGATGTA 59.636 40.000 0.00 0.00 42.41 2.29
2351 2400 4.163458 ACCACTATATTTCCACACGGATGT 59.837 41.667 0.00 0.00 42.41 3.06
2352 2401 4.703897 ACCACTATATTTCCACACGGATG 58.296 43.478 0.00 0.00 42.41 3.51
2353 2402 6.681729 ATACCACTATATTTCCACACGGAT 57.318 37.500 0.00 0.00 42.41 4.18
2354 2403 6.779049 AGTATACCACTATATTTCCACACGGA 59.221 38.462 0.00 0.00 35.86 4.69
2355 2404 6.989659 AGTATACCACTATATTTCCACACGG 58.010 40.000 0.00 0.00 34.98 4.94
2356 2405 7.088905 GGAGTATACCACTATATTTCCACACG 58.911 42.308 0.00 0.00 37.72 4.49
2357 2406 7.234988 AGGGAGTATACCACTATATTTCCACAC 59.765 40.741 0.00 0.00 37.72 3.82
2358 2407 7.310634 AGGGAGTATACCACTATATTTCCACA 58.689 38.462 0.00 0.00 37.72 4.17
2359 2408 7.093421 GGAGGGAGTATACCACTATATTTCCAC 60.093 44.444 0.00 0.00 37.72 4.02
2360 2409 6.958192 GGAGGGAGTATACCACTATATTTCCA 59.042 42.308 0.00 0.00 37.72 3.53
2361 2410 6.096564 CGGAGGGAGTATACCACTATATTTCC 59.903 46.154 0.00 0.00 37.72 3.13
2362 2411 6.662663 ACGGAGGGAGTATACCACTATATTTC 59.337 42.308 0.00 0.00 37.72 2.17
2363 2412 6.559429 ACGGAGGGAGTATACCACTATATTT 58.441 40.000 0.00 0.00 37.72 1.40
2364 2413 6.150034 ACGGAGGGAGTATACCACTATATT 57.850 41.667 0.00 0.00 37.72 1.28
2365 2414 5.339861 GGACGGAGGGAGTATACCACTATAT 60.340 48.000 0.00 0.00 37.72 0.86
2366 2415 4.018960 GGACGGAGGGAGTATACCACTATA 60.019 50.000 0.00 0.00 37.72 1.31
2367 2416 3.245193 GGACGGAGGGAGTATACCACTAT 60.245 52.174 0.00 0.00 37.72 2.12
2368 2417 2.107204 GGACGGAGGGAGTATACCACTA 59.893 54.545 0.00 0.00 37.72 2.74
2369 2418 1.133544 GGACGGAGGGAGTATACCACT 60.134 57.143 0.00 0.00 41.47 4.00
2370 2419 1.326328 GGACGGAGGGAGTATACCAC 58.674 60.000 0.00 0.00 0.00 4.16
2371 2420 0.179009 CGGACGGAGGGAGTATACCA 60.179 60.000 0.00 0.00 0.00 3.25
2372 2421 0.892814 CCGGACGGAGGGAGTATACC 60.893 65.000 4.40 0.00 37.50 2.73
2373 2422 2.638744 CCGGACGGAGGGAGTATAC 58.361 63.158 4.40 0.00 37.50 1.47
2381 2430 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
2382 2431 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
2383 2432 1.340893 TGACTTATACACCCGGACGGA 60.341 52.381 13.13 0.00 37.50 4.69
2384 2433 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
2385 2434 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
2386 2435 3.378339 CGAATGACTTATACACCCGGAC 58.622 50.000 0.73 0.00 0.00 4.79
2387 2436 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
2388 2437 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
2389 2438 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
2390 2439 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
2391 2440 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
2392 2441 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
2393 2442 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
2394 2443 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
2395 2444 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
2396 2445 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
2397 2446 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
2398 2447 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
2399 2448 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
2400 2449 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
2401 2450 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
2402 2451 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
2403 2452 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
2404 2453 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
2405 2454 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
2406 2455 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
2407 2456 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
2408 2457 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
2409 2458 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
2410 2459 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
2411 2460 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
2412 2461 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
2413 2462 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
2414 2463 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
2415 2464 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
2417 2466 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
2418 2467 9.831737 CATATTTAATTCCTCAAATCGATGACC 57.168 33.333 0.00 0.00 0.00 4.02
2459 2508 9.321562 CGTGTGGAAATATAGTGGTATACTTTT 57.678 33.333 2.25 0.00 40.89 2.27
2460 2509 7.929785 CCGTGTGGAAATATAGTGGTATACTTT 59.070 37.037 2.25 0.00 37.99 2.66
2461 2510 7.288389 TCCGTGTGGAAATATAGTGGTATACTT 59.712 37.037 2.25 0.00 42.85 2.24
2462 2511 6.779049 TCCGTGTGGAAATATAGTGGTATACT 59.221 38.462 2.25 0.00 42.85 2.12
2463 2512 6.985117 TCCGTGTGGAAATATAGTGGTATAC 58.015 40.000 0.00 0.00 42.85 1.47
2479 2528 9.706691 ATATATTTAGAAACTACATCCGTGTGG 57.293 33.333 0.00 0.00 42.04 4.17
2537 2586 7.859875 GCGTAGTTCTAGGTCGATAATTTAACT 59.140 37.037 0.00 0.00 0.00 2.24
2538 2587 7.149224 CGCGTAGTTCTAGGTCGATAATTTAAC 60.149 40.741 0.00 0.00 0.00 2.01
2539 2588 6.852853 CGCGTAGTTCTAGGTCGATAATTTAA 59.147 38.462 0.00 0.00 0.00 1.52
2540 2589 6.202762 TCGCGTAGTTCTAGGTCGATAATTTA 59.797 38.462 5.77 0.00 0.00 1.40
2541 2590 5.008019 TCGCGTAGTTCTAGGTCGATAATTT 59.992 40.000 5.77 0.00 0.00 1.82
2542 2591 4.512944 TCGCGTAGTTCTAGGTCGATAATT 59.487 41.667 5.77 0.00 0.00 1.40
2543 2592 4.060900 TCGCGTAGTTCTAGGTCGATAAT 58.939 43.478 5.77 0.00 0.00 1.28
2544 2593 3.457234 TCGCGTAGTTCTAGGTCGATAA 58.543 45.455 5.77 0.00 0.00 1.75
2545 2594 3.097877 TCGCGTAGTTCTAGGTCGATA 57.902 47.619 5.77 0.00 0.00 2.92
2546 2595 1.945387 TCGCGTAGTTCTAGGTCGAT 58.055 50.000 5.77 0.00 0.00 3.59
2547 2596 1.725641 TTCGCGTAGTTCTAGGTCGA 58.274 50.000 5.77 11.56 0.00 4.20
2548 2597 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
2549 2598 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
2550 2599 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
2551 2600 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
2552 2601 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
2553 2602 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
2554 2603 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
2555 2604 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
2556 2605 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
2557 2606 4.604976 GGTGTATAAGTCATTCGCGTAGT 58.395 43.478 5.77 0.00 0.00 2.73
2558 2607 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
2559 2608 3.548616 CCGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
2560 2609 2.456989 CGGTGTATAAGTCATTCGCGT 58.543 47.619 5.77 0.00 0.00 6.01
2561 2610 1.784856 CCGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
2562 2611 2.132762 CCCGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
2563 2612 3.378339 GTCCCGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
2564 2613 3.378339 CGTCCCGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
2565 2614 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
2566 2615 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
2567 2616 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
2568 2617 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
2579 2628 1.467920 AAAGTACTACCTCCGTCCCG 58.532 55.000 0.00 0.00 0.00 5.14
2580 2629 2.827921 TGAAAAGTACTACCTCCGTCCC 59.172 50.000 0.00 0.00 0.00 4.46
2581 2630 4.159135 TCATGAAAAGTACTACCTCCGTCC 59.841 45.833 0.00 0.00 0.00 4.79
2582 2631 5.100943 GTCATGAAAAGTACTACCTCCGTC 58.899 45.833 0.00 0.00 0.00 4.79
2583 2632 4.525487 TGTCATGAAAAGTACTACCTCCGT 59.475 41.667 0.00 0.00 0.00 4.69
2584 2633 5.068234 TGTCATGAAAAGTACTACCTCCG 57.932 43.478 0.00 0.00 0.00 4.63
2614 2663 9.831737 GGTCATCGATTTGAGGAATTAAATATG 57.168 33.333 0.00 0.00 39.46 1.78
2615 2664 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
2617 2666 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
2618 2667 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
2619 2668 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
2620 2669 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
2621 2670 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
2622 2671 6.098982 AGTTCTAGGTCATCGATTTGAGGAAT 59.901 38.462 0.00 0.00 39.46 3.01
2623 2672 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
2624 2673 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
2625 2674 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
2626 2675 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
2627 2676 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
2628 2677 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
2629 2678 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
2630 2679 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
2631 2680 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
2632 2681 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
2633 2682 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
2634 2683 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
2635 2684 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
2636 2685 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
2637 2686 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
2638 2687 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
2639 2688 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
2640 2689 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
2641 2690 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
2642 2691 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
2643 2692 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
2644 2693 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
2645 2694 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
2646 2695 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
2647 2696 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
2648 2697 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
2649 2698 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
2650 2699 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
2651 2700 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
2652 2701 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
2653 2702 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
2654 2703 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
2655 2704 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
2656 2705 1.336125 CTCCGTCCGGGTGTATAAGTC 59.664 57.143 0.00 0.00 37.00 3.01
2657 2706 1.396653 CTCCGTCCGGGTGTATAAGT 58.603 55.000 0.00 0.00 37.00 2.24
2658 2707 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
2659 2708 0.756442 CCCTCCGTCCGGGTGTATAA 60.756 60.000 0.00 0.00 36.91 0.98
2660 2709 1.152694 CCCTCCGTCCGGGTGTATA 60.153 63.158 0.00 0.00 36.91 1.47
2661 2710 2.443390 CCCTCCGTCCGGGTGTAT 60.443 66.667 0.00 0.00 36.91 2.29
2662 2711 3.650298 CTCCCTCCGTCCGGGTGTA 62.650 68.421 0.00 0.00 42.56 2.90
2664 2713 3.650298 TACTCCCTCCGTCCGGGTG 62.650 68.421 0.00 0.00 42.56 4.61
2665 2714 3.341629 TACTCCCTCCGTCCGGGT 61.342 66.667 0.00 0.00 42.56 5.28
2666 2715 2.832201 GTACTCCCTCCGTCCGGG 60.832 72.222 0.00 0.00 43.38 5.73
2667 2716 1.041447 AATGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
2668 2717 1.683943 TAATGTACTCCCTCCGTCCG 58.316 55.000 0.00 0.00 0.00 4.79
2669 2718 3.640029 TCAATAATGTACTCCCTCCGTCC 59.360 47.826 0.00 0.00 0.00 4.79
2670 2719 4.931661 TCAATAATGTACTCCCTCCGTC 57.068 45.455 0.00 0.00 0.00 4.79
2671 2720 5.130477 ACAATCAATAATGTACTCCCTCCGT 59.870 40.000 0.00 0.00 0.00 4.69
2672 2721 5.611374 ACAATCAATAATGTACTCCCTCCG 58.389 41.667 0.00 0.00 0.00 4.63
2673 2722 7.881775 AAACAATCAATAATGTACTCCCTCC 57.118 36.000 0.00 0.00 0.00 4.30
2674 2723 7.702348 GCAAAACAATCAATAATGTACTCCCTC 59.298 37.037 0.00 0.00 0.00 4.30
2675 2724 7.547227 GCAAAACAATCAATAATGTACTCCCT 58.453 34.615 0.00 0.00 0.00 4.20
2676 2725 6.472163 CGCAAAACAATCAATAATGTACTCCC 59.528 38.462 0.00 0.00 0.00 4.30
2677 2726 6.472163 CCGCAAAACAATCAATAATGTACTCC 59.528 38.462 0.00 0.00 0.00 3.85
2680 2729 6.096695 ACCCGCAAAACAATCAATAATGTAC 58.903 36.000 0.00 0.00 0.00 2.90
2694 2743 9.176181 CAATAATAATGTATGTACCCGCAAAAC 57.824 33.333 0.00 0.00 0.00 2.43
2763 2823 4.342378 CCAACAAGATGCTAGCTAGGACTA 59.658 45.833 22.10 0.00 0.00 2.59
2764 2824 3.133721 CCAACAAGATGCTAGCTAGGACT 59.866 47.826 22.10 15.35 0.00 3.85
2765 2825 3.118592 ACCAACAAGATGCTAGCTAGGAC 60.119 47.826 22.10 13.48 0.00 3.85
2766 2826 3.107601 ACCAACAAGATGCTAGCTAGGA 58.892 45.455 22.10 20.14 0.00 2.94
2767 2827 3.201290 CACCAACAAGATGCTAGCTAGG 58.799 50.000 22.10 6.87 0.00 3.02
2768 2828 3.118629 TCCACCAACAAGATGCTAGCTAG 60.119 47.826 16.84 16.84 0.00 3.42
2769 2829 2.837591 TCCACCAACAAGATGCTAGCTA 59.162 45.455 17.23 2.58 0.00 3.32
2770 2830 1.630369 TCCACCAACAAGATGCTAGCT 59.370 47.619 17.23 0.83 0.00 3.32
2771 2831 2.012673 CTCCACCAACAAGATGCTAGC 58.987 52.381 8.10 8.10 0.00 3.42
2772 2832 3.196469 TCTCTCCACCAACAAGATGCTAG 59.804 47.826 0.00 0.00 0.00 3.42
2805 2865 4.500716 CCACCACCACCAAAAAGAATACAC 60.501 45.833 0.00 0.00 0.00 2.90
2812 2878 0.758123 ATGCCACCACCACCAAAAAG 59.242 50.000 0.00 0.00 0.00 2.27
2927 3012 2.861147 AGGACAGCCTCTTTAACACC 57.139 50.000 0.00 0.00 42.19 4.16
3012 3097 5.183713 TCTCCAACTGGAAATGCAAATACTG 59.816 40.000 0.00 0.00 44.91 2.74
3022 3107 6.350780 GCATTGATTCTTCTCCAACTGGAAAT 60.351 38.462 0.00 0.00 44.91 2.17
3053 3138 7.557719 TCTTTTCACCCAATCCTTATCAGATTC 59.442 37.037 0.00 0.00 31.56 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.