Multiple sequence alignment - TraesCS2B01G186500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G186500 chr2B 100.000 6389 0 0 1 6389 161414376 161407988 0.000000e+00 11799.0
1 TraesCS2B01G186500 chr2B 98.333 60 0 1 369 427 398971966 398972025 3.150000e-18 104.0
2 TraesCS2B01G186500 chr2D 92.808 2322 106 27 832 3110 111328065 111325762 0.000000e+00 3306.0
3 TraesCS2B01G186500 chr2D 92.547 1865 87 23 3607 5429 111325327 111323473 0.000000e+00 2627.0
4 TraesCS2B01G186500 chr2D 87.580 942 67 31 5463 6380 111323472 111322557 0.000000e+00 1046.0
5 TraesCS2B01G186500 chr2D 90.819 403 25 4 3112 3504 111325724 111325324 4.390000e-146 529.0
6 TraesCS2B01G186500 chr2D 91.033 368 15 6 3 360 111331434 111331075 1.250000e-131 481.0
7 TraesCS2B01G186500 chr2A 93.555 2110 90 22 858 2937 111417729 111415636 0.000000e+00 3101.0
8 TraesCS2B01G186500 chr2A 90.513 1813 96 35 3607 5366 111415059 111413270 0.000000e+00 2326.0
9 TraesCS2B01G186500 chr2A 91.318 933 68 8 5464 6389 111413236 111412310 0.000000e+00 1262.0
10 TraesCS2B01G186500 chr2A 89.901 406 26 5 3112 3504 111415459 111415056 5.710000e-140 508.0
11 TraesCS2B01G186500 chr2A 91.436 362 20 6 1 360 111420871 111420519 2.680000e-133 486.0
12 TraesCS2B01G186500 chr2A 80.140 428 49 19 451 870 111418172 111417773 2.910000e-73 287.0
13 TraesCS2B01G186500 chr2A 93.478 138 7 2 2975 3110 111415634 111415497 3.020000e-48 204.0
14 TraesCS2B01G186500 chr2A 92.661 109 8 0 2051 2159 205917705 205917597 2.380000e-34 158.0
15 TraesCS2B01G186500 chr2A 86.719 128 14 3 3497 3624 301437219 301437343 8.640000e-29 139.0
16 TraesCS2B01G186500 chr2A 95.312 64 1 2 366 427 524753102 524753039 4.080000e-17 100.0
17 TraesCS2B01G186500 chr7B 94.340 106 6 0 2051 2156 357651589 357651484 5.130000e-36 163.0
18 TraesCS2B01G186500 chr7B 91.667 108 9 0 3503 3610 570465364 570465257 3.990000e-32 150.0
19 TraesCS2B01G186500 chr3D 92.857 112 7 1 3502 3613 551702796 551702906 1.840000e-35 161.0
20 TraesCS2B01G186500 chr5D 92.727 110 8 0 2051 2160 371860715 371860606 6.630000e-35 159.0
21 TraesCS2B01G186500 chr4A 92.105 114 8 1 3501 3614 74167978 74168090 6.630000e-35 159.0
22 TraesCS2B01G186500 chr4A 86.364 132 15 3 3493 3624 557549909 557549781 2.400000e-29 141.0
23 TraesCS2B01G186500 chr4A 95.312 64 1 2 366 427 92300340 92300403 4.080000e-17 100.0
24 TraesCS2B01G186500 chr4A 95.312 64 1 2 366 427 99889834 99889771 4.080000e-17 100.0
25 TraesCS2B01G186500 chr4D 93.396 106 7 0 2051 2156 259497260 259497365 2.380000e-34 158.0
26 TraesCS2B01G186500 chr6B 91.892 111 9 0 3505 3615 617173714 617173824 8.580000e-34 156.0
27 TraesCS2B01G186500 chr6B 89.831 118 12 0 2042 2159 507471541 507471658 1.110000e-32 152.0
28 TraesCS2B01G186500 chr4B 89.600 125 9 3 2038 2159 479155496 479155619 8.580000e-34 156.0
29 TraesCS2B01G186500 chr4B 95.312 64 1 2 369 431 102209703 102209765 4.080000e-17 100.0
30 TraesCS2B01G186500 chr6A 91.743 109 9 0 2051 2159 454678074 454677966 1.110000e-32 152.0
31 TraesCS2B01G186500 chr6A 95.312 64 1 2 366 427 424317109 424317172 4.080000e-17 100.0
32 TraesCS2B01G186500 chr3B 88.281 128 13 2 3492 3618 783531240 783531366 1.110000e-32 152.0
33 TraesCS2B01G186500 chr1A 90.351 114 9 2 3497 3610 523409111 523409000 1.440000e-31 148.0
34 TraesCS2B01G186500 chr1A 93.750 64 2 2 366 427 531183160 531183097 1.900000e-15 95.3
35 TraesCS2B01G186500 chr5B 88.983 118 12 1 3500 3616 603815869 603815752 1.860000e-30 145.0
36 TraesCS2B01G186500 chr7A 89.333 75 6 2 373 446 116123092 116123165 6.820000e-15 93.5
37 TraesCS2B01G186500 chr3A 86.047 86 7 5 343 427 571806141 571806060 3.170000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G186500 chr2B 161407988 161414376 6388 True 11799.000000 11799 100.000000 1 6389 1 chr2B.!!$R1 6388
1 TraesCS2B01G186500 chr2D 111322557 111331434 8877 True 1597.800000 3306 90.957400 3 6380 5 chr2D.!!$R1 6377
2 TraesCS2B01G186500 chr2A 111412310 111420871 8561 True 1167.714286 3101 90.048714 1 6389 7 chr2A.!!$R3 6388


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 3381 0.686769 CCGGTGTAGGCTAGGGTTCT 60.687 60.000 0.0 0.0 0.00 3.01 F
1363 4262 0.041663 CGCGTCGGAATTTTGTGTGT 60.042 50.000 0.0 0.0 0.00 3.72 F
2413 5326 1.137513 CAACAACCTCCGAACGTCTC 58.862 55.000 0.0 0.0 0.00 3.36 F
3389 6355 1.076513 AGCCGGTTTTGGGGTAAGATT 59.923 47.619 1.9 0.0 32.50 2.40 F
3521 6490 0.043637 TACTCCCTCCACCCCGAATT 59.956 55.000 0.0 0.0 0.00 2.17 F
3524 6493 0.043637 TCCCTCCACCCCGAATTACT 59.956 55.000 0.0 0.0 0.00 2.24 F
3531 6500 0.322322 ACCCCGAATTACTTGTCGCA 59.678 50.000 0.0 0.0 35.93 5.10 F
3532 6501 1.006832 CCCCGAATTACTTGTCGCAG 58.993 55.000 0.0 0.0 35.93 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2413 5326 0.318107 CAGCTTTGGACTGCCGTTTG 60.318 55.000 0.00 0.00 36.79 2.93 R
2795 5710 1.816835 ACATCGTACGGATCACTGTGT 59.183 47.619 16.52 5.26 36.89 3.72 R
3505 6474 0.043637 AGTAATTCGGGGTGGAGGGA 59.956 55.000 0.00 0.00 0.00 4.20 R
4694 7677 1.081906 GTGCGTGCTGTCCAACATG 60.082 57.895 0.00 0.00 0.00 3.21 R
5354 8382 2.241722 CACTTTCCGCAAGCAAATACG 58.758 47.619 0.00 0.00 35.65 3.06 R
5355 8383 3.282831 ACACTTTCCGCAAGCAAATAC 57.717 42.857 0.00 0.00 35.65 1.89 R
5365 8393 4.217754 TGATGTTGTTAACACTTTCCGC 57.782 40.909 8.07 0.00 45.50 5.54 R
5434 8464 4.340666 TGGCATAACTTTTGCAGAAACTCA 59.659 37.500 6.55 0.00 41.95 3.41 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.684881 GCCTAGCTGTTAACATGCACAT 59.315 45.455 23.12 11.49 0.00 3.21
47 48 2.642139 AGCTGTTAACATGCACATGC 57.358 45.000 23.12 15.65 42.39 4.06
144 153 2.284190 GCTTATGAGTCCTGCTGGTTC 58.716 52.381 9.73 9.29 34.23 3.62
186 195 5.877012 AGTCAGCATTTCTCATGTAATCGTT 59.123 36.000 0.00 0.00 0.00 3.85
197 206 7.033791 TCTCATGTAATCGTTAGTTTCAGTCC 58.966 38.462 0.00 0.00 0.00 3.85
199 208 8.058667 TCATGTAATCGTTAGTTTCAGTCCTA 57.941 34.615 0.00 0.00 0.00 2.94
279 290 3.629398 GGAGGGAGTAATGCTCAAATGTG 59.371 47.826 0.02 0.00 45.88 3.21
320 331 4.162096 CTGTAATAGCCTAGTAGCCACG 57.838 50.000 0.00 0.00 0.00 4.94
360 371 4.584743 CAGGGATATGACTACTGTAGCACA 59.415 45.833 14.55 14.45 0.00 4.57
362 373 5.661312 AGGGATATGACTACTGTAGCACAAA 59.339 40.000 14.55 4.62 0.00 2.83
364 375 5.986135 GGATATGACTACTGTAGCACAAAGG 59.014 44.000 14.55 0.00 0.00 3.11
365 376 6.183360 GGATATGACTACTGTAGCACAAAGGA 60.183 42.308 14.55 4.34 0.00 3.36
367 378 4.820897 TGACTACTGTAGCACAAAGGATG 58.179 43.478 14.55 0.00 0.00 3.51
384 1942 3.467803 GGATGTGTATCCCTCCTTTTCG 58.532 50.000 0.00 0.00 46.03 3.46
385 1943 3.467803 GATGTGTATCCCTCCTTTTCGG 58.532 50.000 0.00 0.00 0.00 4.30
389 1947 4.286549 TGTGTATCCCTCCTTTTCGGTTTA 59.713 41.667 0.00 0.00 0.00 2.01
391 1949 6.156602 TGTGTATCCCTCCTTTTCGGTTTATA 59.843 38.462 0.00 0.00 0.00 0.98
392 1950 7.049754 GTGTATCCCTCCTTTTCGGTTTATAA 58.950 38.462 0.00 0.00 0.00 0.98
394 1952 5.106876 TCCCTCCTTTTCGGTTTATAAGG 57.893 43.478 0.00 0.00 38.78 2.69
398 1956 6.117488 CCTCCTTTTCGGTTTATAAGGCTTA 58.883 40.000 9.79 9.79 37.62 3.09
404 1962 8.795842 TTTTCGGTTTATAAGGCTTATCTCAA 57.204 30.769 22.39 9.63 0.00 3.02
405 1963 8.795842 TTTCGGTTTATAAGGCTTATCTCAAA 57.204 30.769 22.39 14.69 0.00 2.69
406 1964 8.795842 TTCGGTTTATAAGGCTTATCTCAAAA 57.204 30.769 22.39 14.37 0.00 2.44
408 1966 9.403583 TCGGTTTATAAGGCTTATCTCAAAATT 57.596 29.630 22.39 0.00 0.00 1.82
455 3140 8.928448 AGATATATGTTGTCATTGGACTAGTGT 58.072 33.333 0.00 0.00 44.61 3.55
456 3141 9.547753 GATATATGTTGTCATTGGACTAGTGTT 57.452 33.333 0.00 0.00 44.61 3.32
469 3154 4.776308 GGACTAGTGTTTAGGGAAAGGAGA 59.224 45.833 0.00 0.00 0.00 3.71
479 3164 1.339151 GGGAAAGGAGAACATGCTCGT 60.339 52.381 0.00 0.00 35.74 4.18
481 3166 3.596214 GGAAAGGAGAACATGCTCGTTA 58.404 45.455 8.19 0.00 40.82 3.18
485 3170 1.403780 GGAGAACATGCTCGTTACCGT 60.404 52.381 0.00 0.00 35.74 4.83
491 3176 2.288334 ACATGCTCGTTACCGTTGTACA 60.288 45.455 0.00 0.00 35.01 2.90
497 3182 1.192980 CGTTACCGTTGTACAAGCACC 59.807 52.381 8.98 0.00 0.00 5.01
500 3185 2.170036 CGTTGTACAAGCACCGCG 59.830 61.111 8.98 0.00 0.00 6.46
503 3188 1.004320 TTGTACAAGCACCGCGGAT 60.004 52.632 35.90 14.84 0.00 4.18
504 3189 1.295357 TTGTACAAGCACCGCGGATG 61.295 55.000 35.90 25.95 0.00 3.51
559 3244 4.838486 CCTCCTGCTCGTCGTCGC 62.838 72.222 0.00 0.00 36.96 5.19
596 3281 3.402681 ATGAGCCGACCAGGGGTG 61.403 66.667 0.00 0.00 41.48 4.61
597 3282 3.924013 ATGAGCCGACCAGGGGTGA 62.924 63.158 0.00 0.00 41.48 4.02
598 3283 4.083862 GAGCCGACCAGGGGTGAC 62.084 72.222 0.00 0.00 41.48 3.67
614 3301 0.827089 TGACAAACACATGGGGCAGG 60.827 55.000 0.00 0.00 0.00 4.85
671 3359 1.489560 AAGGAGGAGGTGGTTTCCCG 61.490 60.000 0.00 0.00 35.20 5.14
688 3381 0.686769 CCGGTGTAGGCTAGGGTTCT 60.687 60.000 0.00 0.00 0.00 3.01
723 3418 2.738521 GCAGCGAAACAGAGCCGA 60.739 61.111 0.00 0.00 0.00 5.54
725 3420 2.002127 CAGCGAAACAGAGCCGATC 58.998 57.895 0.00 0.00 0.00 3.69
757 3452 5.669848 GCAAGTCAGATTGATGAACGTCTTC 60.670 44.000 0.00 0.00 31.55 2.87
758 3453 5.398603 AGTCAGATTGATGAACGTCTTCT 57.601 39.130 0.00 0.00 0.00 2.85
760 3455 6.559810 AGTCAGATTGATGAACGTCTTCTAG 58.440 40.000 0.00 0.00 0.00 2.43
761 3456 6.375736 AGTCAGATTGATGAACGTCTTCTAGA 59.624 38.462 0.00 0.00 0.00 2.43
762 3457 7.030165 GTCAGATTGATGAACGTCTTCTAGAA 58.970 38.462 4.81 4.81 0.00 2.10
763 3458 7.542477 GTCAGATTGATGAACGTCTTCTAGAAA 59.458 37.037 6.63 0.00 0.00 2.52
764 3459 8.088365 TCAGATTGATGAACGTCTTCTAGAAAA 58.912 33.333 6.63 0.00 0.00 2.29
765 3460 8.712363 CAGATTGATGAACGTCTTCTAGAAAAA 58.288 33.333 6.63 0.00 0.00 1.94
815 3594 7.284261 TGATTTACCAACTTCATCACAAGTGAA 59.716 33.333 7.02 0.00 43.58 3.18
822 3601 5.526115 ACTTCATCACAAGTGAATTTGCAG 58.474 37.500 7.02 4.06 43.58 4.41
870 3734 9.248291 TCACTCAAAAAGCAAATCTGTTATTTC 57.752 29.630 0.00 0.00 0.00 2.17
897 3761 3.968724 GCAAAAACTTCACGAGTCATGTC 59.031 43.478 0.00 0.00 37.72 3.06
916 3780 1.975680 TCGGGCCAAGAAAAGTACTCT 59.024 47.619 4.39 0.00 0.00 3.24
1362 4261 2.695087 CGCGTCGGAATTTTGTGTG 58.305 52.632 0.00 0.00 0.00 3.82
1363 4262 0.041663 CGCGTCGGAATTTTGTGTGT 60.042 50.000 0.00 0.00 0.00 3.72
1364 4263 1.670326 GCGTCGGAATTTTGTGTGTC 58.330 50.000 0.00 0.00 0.00 3.67
1596 4499 2.552155 GGAATCTATTGCCCGGCACATA 60.552 50.000 13.00 11.98 38.71 2.29
1602 4505 2.513897 GCCCGGCACATACCTGAC 60.514 66.667 3.91 0.00 0.00 3.51
1635 4538 9.229784 GTGATTTGTAGCTCACATTTTATCATG 57.770 33.333 0.00 0.00 41.13 3.07
1834 4747 2.059541 AGTTAAAGAGTCGAACTGCGC 58.940 47.619 0.00 0.00 40.61 6.09
1935 4848 3.817084 TGTGTTTGCAGAGAAGATGAAGG 59.183 43.478 0.00 0.00 0.00 3.46
2049 4962 8.084073 TCTCTTTGATGAAATGTGAAATTCACC 58.916 33.333 21.75 8.19 46.40 4.02
2053 4966 7.053316 TGATGAAATGTGAAATTCACCACTT 57.947 32.000 21.75 12.57 46.40 3.16
2057 4970 6.098124 TGAAATGTGAAATTCACCACTTCCTT 59.902 34.615 21.75 6.03 46.40 3.36
2115 5028 6.960468 TCTAGACGTATTTCAGTGCTAGATG 58.040 40.000 0.00 0.00 30.90 2.90
2146 5059 4.546570 TGAGCGACAAGTAATATGGATCG 58.453 43.478 0.00 0.00 0.00 3.69
2164 5077 4.278919 GGATCGGAGGGAGTACTAAGAAAG 59.721 50.000 0.00 0.00 0.00 2.62
2188 5101 8.375493 AGTACTGACCCTGAATGTATCTTTTA 57.625 34.615 0.00 0.00 0.00 1.52
2229 5142 3.440173 ACGAAGCAAACCGATTCATCAAT 59.560 39.130 0.00 0.00 40.14 2.57
2242 5155 3.853831 TCATCAATGATGCACACCAAC 57.146 42.857 17.81 0.00 39.63 3.77
2302 5215 6.749923 AACATGCCTCTTCATTTCTTACTC 57.250 37.500 0.00 0.00 0.00 2.59
2351 5264 7.278646 TGTGATTATTATGTCTGTCTGTTCTGC 59.721 37.037 0.00 0.00 0.00 4.26
2413 5326 1.137513 CAACAACCTCCGAACGTCTC 58.862 55.000 0.00 0.00 0.00 3.36
2478 5391 4.989168 CCCAATGAGGCGAGTAAGTATTAC 59.011 45.833 0.00 0.00 43.66 1.89
2495 5408 8.429493 AAGTATTACGGTCTTGGCTATTTTAC 57.571 34.615 0.00 0.00 0.00 2.01
2498 5411 4.546829 ACGGTCTTGGCTATTTTACTGA 57.453 40.909 0.00 0.00 0.00 3.41
2516 5429 5.567138 ACTGACTTTGTGTTTTCTTCCTG 57.433 39.130 0.00 0.00 0.00 3.86
2541 5454 9.087424 TGTATATGTATATTTTGAGATCGCTGC 57.913 33.333 0.00 0.00 0.00 5.25
2581 5494 8.522003 TGCATTCAACTTTGCTCATATTTAGAA 58.478 29.630 0.00 0.00 39.60 2.10
2731 5646 4.122776 CCTGAGTTACCATGCATAGACAC 58.877 47.826 0.00 0.00 0.00 3.67
2795 5710 8.567198 TTATAGATGGAGAAAAGAAGGATGGA 57.433 34.615 0.00 0.00 0.00 3.41
2945 5861 9.739276 ATTTGTTGTTCTGATATTTAGTCTCCA 57.261 29.630 0.00 0.00 0.00 3.86
3030 5949 7.012894 TGTCCATTATTTTACGATTCATGGTCC 59.987 37.037 0.00 0.00 32.92 4.46
3048 5967 3.945921 GGTCCTAAGTAAATTGCACCCTC 59.054 47.826 0.00 0.00 0.00 4.30
3050 5969 2.943033 CCTAAGTAAATTGCACCCTCCG 59.057 50.000 0.00 0.00 0.00 4.63
3064 5985 3.639094 CACCCTCCGATTCTGTCTAATCT 59.361 47.826 0.00 0.00 34.34 2.40
3198 6162 8.458573 ACCAACAAGACTATCATGTTTTGTTA 57.541 30.769 13.27 0.00 46.40 2.41
3200 6164 9.912634 CCAACAAGACTATCATGTTTTGTTATT 57.087 29.630 13.27 0.00 46.40 1.40
3202 6166 8.970691 ACAAGACTATCATGTTTTGTTATTGC 57.029 30.769 0.00 0.00 40.72 3.56
3221 6187 6.940831 ATTGCAATATTGTTTTATTGGGCC 57.059 33.333 11.02 0.00 39.11 5.80
3225 6191 6.126825 TGCAATATTGTTTTATTGGGCCAGAT 60.127 34.615 16.61 6.38 39.11 2.90
3241 6207 4.034510 GGCCAGATAGATTGTTTGAGAACG 59.965 45.833 0.00 0.00 38.65 3.95
3244 6210 5.292101 CCAGATAGATTGTTTGAGAACGGTC 59.708 44.000 0.00 0.00 38.65 4.79
3249 6215 2.031258 TGTTTGAGAACGGTCTGCAA 57.969 45.000 8.28 9.53 38.65 4.08
3250 6216 2.360844 TGTTTGAGAACGGTCTGCAAA 58.639 42.857 8.28 15.17 38.65 3.68
3253 6219 4.576873 TGTTTGAGAACGGTCTGCAAATAA 59.423 37.500 22.27 15.00 38.65 1.40
3257 6223 4.873827 TGAGAACGGTCTGCAAATAATACC 59.126 41.667 8.28 0.00 32.80 2.73
3258 6224 4.839121 AGAACGGTCTGCAAATAATACCA 58.161 39.130 0.00 0.00 30.83 3.25
3286 6252 5.713025 CATTTGGTTCTGAATGTTGGGTAG 58.287 41.667 0.00 0.00 0.00 3.18
3299 6265 9.249053 TGAATGTTGGGTAGCATAATTTTCTTA 57.751 29.630 0.00 0.00 0.00 2.10
3351 6317 6.093082 TCAGCATTGCAATTCATATCCTATCG 59.907 38.462 9.83 0.00 0.00 2.92
3389 6355 1.076513 AGCCGGTTTTGGGGTAAGATT 59.923 47.619 1.90 0.00 32.50 2.40
3401 6367 3.883489 GGGGTAAGATTCAACTATGTGCC 59.117 47.826 0.00 0.00 0.00 5.01
3410 6376 8.034313 AGATTCAACTATGTGCCCTTAATCTA 57.966 34.615 0.00 0.00 31.31 1.98
3456 6425 6.222389 AGTTAGCATGCTACATCTGAAGATC 58.778 40.000 26.87 3.52 31.21 2.75
3473 6442 5.831525 TGAAGATCCAATCATTCAATCCTGG 59.168 40.000 0.00 0.00 0.00 4.45
3497 6466 7.554835 TGGCGGTCAAACAATATAAACTTCTAT 59.445 33.333 0.00 0.00 0.00 1.98
3513 6482 5.447757 ACTTCTATGTAGTACTCCCTCCAC 58.552 45.833 0.00 0.00 0.00 4.02
3515 6484 2.473576 ATGTAGTACTCCCTCCACCC 57.526 55.000 0.00 0.00 0.00 4.61
3516 6485 0.337428 TGTAGTACTCCCTCCACCCC 59.663 60.000 0.00 0.00 0.00 4.95
3517 6486 0.754587 GTAGTACTCCCTCCACCCCG 60.755 65.000 0.00 0.00 0.00 5.73
3518 6487 0.920763 TAGTACTCCCTCCACCCCGA 60.921 60.000 0.00 0.00 0.00 5.14
3519 6488 1.305549 GTACTCCCTCCACCCCGAA 60.306 63.158 0.00 0.00 0.00 4.30
3520 6489 0.690077 GTACTCCCTCCACCCCGAAT 60.690 60.000 0.00 0.00 0.00 3.34
3521 6490 0.043637 TACTCCCTCCACCCCGAATT 59.956 55.000 0.00 0.00 0.00 2.17
3522 6491 0.043637 ACTCCCTCCACCCCGAATTA 59.956 55.000 0.00 0.00 0.00 1.40
3523 6492 0.468648 CTCCCTCCACCCCGAATTAC 59.531 60.000 0.00 0.00 0.00 1.89
3524 6493 0.043637 TCCCTCCACCCCGAATTACT 59.956 55.000 0.00 0.00 0.00 2.24
3525 6494 0.916809 CCCTCCACCCCGAATTACTT 59.083 55.000 0.00 0.00 0.00 2.24
3526 6495 1.408266 CCCTCCACCCCGAATTACTTG 60.408 57.143 0.00 0.00 0.00 3.16
3527 6496 1.280998 CCTCCACCCCGAATTACTTGT 59.719 52.381 0.00 0.00 0.00 3.16
3528 6497 2.629051 CTCCACCCCGAATTACTTGTC 58.371 52.381 0.00 0.00 0.00 3.18
3529 6498 1.066716 TCCACCCCGAATTACTTGTCG 60.067 52.381 0.00 0.00 37.01 4.35
3530 6499 0.725117 CACCCCGAATTACTTGTCGC 59.275 55.000 0.00 0.00 35.93 5.19
3531 6500 0.322322 ACCCCGAATTACTTGTCGCA 59.678 50.000 0.00 0.00 35.93 5.10
3532 6501 1.006832 CCCCGAATTACTTGTCGCAG 58.993 55.000 0.00 0.00 35.93 5.18
3533 6502 1.404986 CCCCGAATTACTTGTCGCAGA 60.405 52.381 0.00 0.00 35.93 4.26
3534 6503 2.343101 CCCGAATTACTTGTCGCAGAA 58.657 47.619 0.00 0.00 39.69 3.02
3535 6504 2.739913 CCCGAATTACTTGTCGCAGAAA 59.260 45.455 0.00 0.00 39.69 2.52
3536 6505 3.374058 CCCGAATTACTTGTCGCAGAAAT 59.626 43.478 0.00 0.00 39.69 2.17
3537 6506 4.334443 CCGAATTACTTGTCGCAGAAATG 58.666 43.478 0.00 0.00 39.69 2.32
3538 6507 3.780801 CGAATTACTTGTCGCAGAAATGC 59.219 43.478 0.00 0.00 39.69 3.56
3539 6508 4.668941 CGAATTACTTGTCGCAGAAATGCA 60.669 41.667 0.00 0.00 39.69 3.96
3540 6509 4.970662 ATTACTTGTCGCAGAAATGCAT 57.029 36.364 0.00 0.00 39.69 3.96
3541 6510 2.624316 ACTTGTCGCAGAAATGCATG 57.376 45.000 0.00 0.00 39.69 4.06
3542 6511 1.881973 ACTTGTCGCAGAAATGCATGT 59.118 42.857 0.00 0.00 39.69 3.21
3543 6512 3.073678 ACTTGTCGCAGAAATGCATGTA 58.926 40.909 0.00 0.00 39.69 2.29
3544 6513 3.691118 ACTTGTCGCAGAAATGCATGTAT 59.309 39.130 0.00 0.00 39.69 2.29
3545 6514 3.950087 TGTCGCAGAAATGCATGTATC 57.050 42.857 0.00 0.00 39.69 2.24
3546 6515 3.534554 TGTCGCAGAAATGCATGTATCT 58.465 40.909 0.00 1.70 39.69 1.98
3547 6516 4.692228 TGTCGCAGAAATGCATGTATCTA 58.308 39.130 0.00 0.00 39.69 1.98
3548 6517 4.746611 TGTCGCAGAAATGCATGTATCTAG 59.253 41.667 0.00 3.33 39.69 2.43
3549 6518 4.984785 GTCGCAGAAATGCATGTATCTAGA 59.015 41.667 0.00 0.00 39.69 2.43
3550 6519 5.636965 GTCGCAGAAATGCATGTATCTAGAT 59.363 40.000 10.73 10.73 39.69 1.98
3551 6520 5.636543 TCGCAGAAATGCATGTATCTAGATG 59.363 40.000 15.79 0.83 34.41 2.90
3552 6521 5.407691 CGCAGAAATGCATGTATCTAGATGT 59.592 40.000 15.79 0.00 34.41 3.06
3553 6522 6.587608 CGCAGAAATGCATGTATCTAGATGTA 59.412 38.462 15.79 4.44 34.41 2.29
3554 6523 7.277319 CGCAGAAATGCATGTATCTAGATGTAT 59.723 37.037 15.79 6.61 34.64 2.29
3555 6524 8.944029 GCAGAAATGCATGTATCTAGATGTATT 58.056 33.333 15.79 8.33 41.53 1.89
3582 6551 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
3583 6552 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
3584 6553 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
3585 6554 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
3586 6555 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
3587 6556 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
3588 6557 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
3589 6558 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
3590 6559 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
3591 6560 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
3592 6561 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
3593 6562 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
3594 6563 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
3595 6564 5.000591 TCCATTTCTGCGACAAGTAATTCA 58.999 37.500 0.00 0.00 0.00 2.57
3596 6565 5.471797 TCCATTTCTGCGACAAGTAATTCAA 59.528 36.000 0.00 0.00 0.00 2.69
3597 6566 5.796935 CCATTTCTGCGACAAGTAATTCAAG 59.203 40.000 0.00 0.00 0.00 3.02
3598 6567 6.348458 CCATTTCTGCGACAAGTAATTCAAGA 60.348 38.462 0.00 0.00 0.00 3.02
3599 6568 6.801539 TTTCTGCGACAAGTAATTCAAGAT 57.198 33.333 0.00 0.00 0.00 2.40
3600 6569 5.784750 TCTGCGACAAGTAATTCAAGATG 57.215 39.130 0.00 0.00 0.00 2.90
3601 6570 4.631377 TCTGCGACAAGTAATTCAAGATGG 59.369 41.667 0.00 0.00 0.00 3.51
3602 6571 4.574892 TGCGACAAGTAATTCAAGATGGA 58.425 39.130 0.00 0.00 0.00 3.41
3603 6572 4.631377 TGCGACAAGTAATTCAAGATGGAG 59.369 41.667 0.00 0.00 0.00 3.86
3604 6573 4.034510 GCGACAAGTAATTCAAGATGGAGG 59.965 45.833 0.00 0.00 0.00 4.30
3605 6574 4.572389 CGACAAGTAATTCAAGATGGAGGG 59.428 45.833 0.00 0.00 0.00 4.30
3606 6575 5.626809 CGACAAGTAATTCAAGATGGAGGGA 60.627 44.000 0.00 0.00 0.00 4.20
3607 6576 5.749462 ACAAGTAATTCAAGATGGAGGGAG 58.251 41.667 0.00 0.00 0.00 4.30
3608 6577 5.251700 ACAAGTAATTCAAGATGGAGGGAGT 59.748 40.000 0.00 0.00 0.00 3.85
3609 6578 6.443849 ACAAGTAATTCAAGATGGAGGGAGTA 59.556 38.462 0.00 0.00 0.00 2.59
3610 6579 7.127955 ACAAGTAATTCAAGATGGAGGGAGTAT 59.872 37.037 0.00 0.00 0.00 2.12
3611 6580 7.072263 AGTAATTCAAGATGGAGGGAGTATG 57.928 40.000 0.00 0.00 0.00 2.39
3612 6581 6.846505 AGTAATTCAAGATGGAGGGAGTATGA 59.153 38.462 0.00 0.00 0.00 2.15
3613 6582 6.581388 AATTCAAGATGGAGGGAGTATGAA 57.419 37.500 0.00 0.00 0.00 2.57
3614 6583 6.776887 ATTCAAGATGGAGGGAGTATGAAT 57.223 37.500 0.00 0.00 32.92 2.57
3615 6584 7.878621 ATTCAAGATGGAGGGAGTATGAATA 57.121 36.000 0.00 0.00 35.25 1.75
3616 6585 7.690454 TTCAAGATGGAGGGAGTATGAATAA 57.310 36.000 0.00 0.00 0.00 1.40
3617 6586 7.878621 TCAAGATGGAGGGAGTATGAATAAT 57.121 36.000 0.00 0.00 0.00 1.28
3618 6587 8.972662 TCAAGATGGAGGGAGTATGAATAATA 57.027 34.615 0.00 0.00 0.00 0.98
3619 6588 9.392506 TCAAGATGGAGGGAGTATGAATAATAA 57.607 33.333 0.00 0.00 0.00 1.40
3688 6659 7.561722 TCTCTGTGGATATAACTTGTCTAAGCT 59.438 37.037 0.00 0.00 37.43 3.74
3689 6660 8.079211 TCTGTGGATATAACTTGTCTAAGCTT 57.921 34.615 3.48 3.48 37.43 3.74
3717 6688 6.293298 CGTAGAACCTTATACATAGTCAGCGT 60.293 42.308 0.00 0.00 0.00 5.07
3718 6689 6.074544 AGAACCTTATACATAGTCAGCGTC 57.925 41.667 0.00 0.00 0.00 5.19
3719 6690 4.485024 ACCTTATACATAGTCAGCGTCG 57.515 45.455 0.00 0.00 0.00 5.12
3720 6691 3.252701 ACCTTATACATAGTCAGCGTCGG 59.747 47.826 0.00 0.00 0.00 4.79
3803 6778 7.157347 TGGATTTCTAATAGCATGAGTAGCAG 58.843 38.462 0.00 0.00 0.00 4.24
3881 6856 3.975168 TTGTACTAGGCTTCCTGTTCC 57.025 47.619 0.00 0.00 34.61 3.62
3932 6907 2.168521 CACACGACAATCCCAGAGGTAT 59.831 50.000 0.00 0.00 0.00 2.73
3933 6908 3.383505 CACACGACAATCCCAGAGGTATA 59.616 47.826 0.00 0.00 0.00 1.47
3936 6911 3.890147 ACGACAATCCCAGAGGTATACTC 59.110 47.826 2.25 0.00 46.98 2.59
3950 6925 4.164413 AGGTATACTCTCAAGGAAAAGGCC 59.836 45.833 2.25 0.00 0.00 5.19
3966 6941 1.959985 AGGCCACATATCTCTGTCTCG 59.040 52.381 5.01 0.00 0.00 4.04
3971 6946 4.740695 GCCACATATCTCTGTCTCGTTAAC 59.259 45.833 0.00 0.00 0.00 2.01
4040 7018 2.484065 GGTTTACCCACTTTTTGTGCCC 60.484 50.000 0.00 0.00 44.92 5.36
4064 7042 3.371898 GGCAAAATAATTGCTCTGTTGGC 59.628 43.478 12.34 0.00 44.36 4.52
4442 7420 2.346803 GCAAGCGTATTCTGGTTCTCA 58.653 47.619 0.00 0.00 0.00 3.27
4466 7444 3.669122 CAGCGCGTACTATCTTCCATAAC 59.331 47.826 8.43 0.00 0.00 1.89
4492 7470 9.321562 CCTGCTCAAATTTGCAAATTATATTCT 57.678 29.630 31.87 16.31 37.62 2.40
4513 7491 6.268825 TCTCGTATCTTTCTTACAACTGCT 57.731 37.500 0.00 0.00 0.00 4.24
4516 7494 4.330074 CGTATCTTTCTTACAACTGCTGGG 59.670 45.833 0.00 0.00 0.00 4.45
4525 7503 3.439857 ACAACTGCTGGGAATGTACAT 57.560 42.857 1.41 1.41 0.00 2.29
4549 7527 7.987268 TCTAAAGATGTCGTAGCACTATTTG 57.013 36.000 0.00 0.00 0.00 2.32
4550 7528 7.169982 ATCTAAAGATGTCGTAGCACTATTTGC 59.830 37.037 0.00 0.00 41.73 3.68
4694 7677 1.022735 CCATCTCATCCAACAGCAGC 58.977 55.000 0.00 0.00 0.00 5.25
4735 7718 3.181465 ACAGCTATCATGGTAAACTCCCG 60.181 47.826 0.00 0.00 0.00 5.14
4822 7807 1.267121 TTAACCAGCCGAGCTCTCTT 58.733 50.000 12.85 0.00 36.40 2.85
5117 8112 9.467796 TGATCATATGGTTTTGGTTTGTGTATA 57.532 29.630 2.13 0.00 0.00 1.47
5226 8225 9.716507 GTACAGCACCTGTAATTTGTAAATATG 57.283 33.333 6.66 0.00 46.55 1.78
5227 8226 8.348285 ACAGCACCTGTAATTTGTAAATATGT 57.652 30.769 0.00 0.00 43.46 2.29
5228 8227 9.456147 ACAGCACCTGTAATTTGTAAATATGTA 57.544 29.630 0.00 0.00 43.46 2.29
5229 8228 9.716507 CAGCACCTGTAATTTGTAAATATGTAC 57.283 33.333 0.00 0.00 0.00 2.90
5230 8229 9.681062 AGCACCTGTAATTTGTAAATATGTACT 57.319 29.630 4.68 0.00 0.00 2.73
5324 8349 3.936372 TGTTGCTGTACCTCTCTACAC 57.064 47.619 0.00 0.00 0.00 2.90
5346 8374 6.039270 ACACAAGCATCTGCAAAGTAAAGTAA 59.961 34.615 4.79 0.00 45.16 2.24
5347 8375 7.086376 CACAAGCATCTGCAAAGTAAAGTAAT 58.914 34.615 4.79 0.00 45.16 1.89
5348 8376 7.596248 CACAAGCATCTGCAAAGTAAAGTAATT 59.404 33.333 4.79 0.00 45.16 1.40
5349 8377 8.792633 ACAAGCATCTGCAAAGTAAAGTAATTA 58.207 29.630 4.79 0.00 45.16 1.40
5367 8395 7.342194 AGTAATTATGTACGTATTTGCTTGCG 58.658 34.615 12.03 0.00 0.00 4.85
5380 8409 2.017782 TGCTTGCGGAAAGTGTTAACA 58.982 42.857 3.59 3.59 38.25 2.41
5407 8436 5.904941 TCATGCCAATGTTGATAAATGACC 58.095 37.500 0.00 0.00 35.15 4.02
5408 8437 5.657745 TCATGCCAATGTTGATAAATGACCT 59.342 36.000 0.00 0.00 35.15 3.85
5421 8451 8.648698 TGATAAATGACCTGAAGATTTGGAAA 57.351 30.769 0.00 0.00 0.00 3.13
5429 8459 7.016465 TGACCTGAAGATTTGGAAAATGGATTT 59.984 33.333 0.00 0.00 0.00 2.17
5430 8460 7.389232 ACCTGAAGATTTGGAAAATGGATTTC 58.611 34.615 0.00 0.00 45.55 2.17
5431 8461 7.236225 ACCTGAAGATTTGGAAAATGGATTTCT 59.764 33.333 1.47 0.00 45.57 2.52
5432 8462 8.098912 CCTGAAGATTTGGAAAATGGATTTCTT 58.901 33.333 1.47 0.00 45.57 2.52
5441 8471 9.927668 TTGGAAAATGGATTTCTTATGAGTTTC 57.072 29.630 1.47 0.00 45.57 2.78
5442 8472 9.312904 TGGAAAATGGATTTCTTATGAGTTTCT 57.687 29.630 0.00 0.00 45.57 2.52
5443 8473 9.578439 GGAAAATGGATTTCTTATGAGTTTCTG 57.422 33.333 0.00 0.00 45.57 3.02
5444 8474 8.992835 AAAATGGATTTCTTATGAGTTTCTGC 57.007 30.769 0.00 0.00 0.00 4.26
5445 8475 7.707624 AATGGATTTCTTATGAGTTTCTGCA 57.292 32.000 0.00 0.00 0.00 4.41
5446 8476 7.707624 ATGGATTTCTTATGAGTTTCTGCAA 57.292 32.000 0.00 0.00 0.00 4.08
5447 8477 7.523293 TGGATTTCTTATGAGTTTCTGCAAA 57.477 32.000 0.00 0.00 0.00 3.68
5448 8478 7.950512 TGGATTTCTTATGAGTTTCTGCAAAA 58.049 30.769 0.00 0.00 0.00 2.44
5449 8479 8.084073 TGGATTTCTTATGAGTTTCTGCAAAAG 58.916 33.333 0.00 0.00 0.00 2.27
5450 8480 8.084684 GGATTTCTTATGAGTTTCTGCAAAAGT 58.915 33.333 0.00 0.00 0.00 2.66
5451 8481 9.468532 GATTTCTTATGAGTTTCTGCAAAAGTT 57.531 29.630 0.00 0.00 0.00 2.66
5454 8484 9.897744 TTCTTATGAGTTTCTGCAAAAGTTATG 57.102 29.630 12.48 0.00 0.00 1.90
5455 8485 8.023128 TCTTATGAGTTTCTGCAAAAGTTATGC 58.977 33.333 12.48 0.00 44.08 3.14
5456 8486 4.870363 TGAGTTTCTGCAAAAGTTATGCC 58.130 39.130 0.00 0.00 43.16 4.40
5457 8487 4.340666 TGAGTTTCTGCAAAAGTTATGCCA 59.659 37.500 0.00 0.00 43.16 4.92
5458 8488 5.010922 TGAGTTTCTGCAAAAGTTATGCCAT 59.989 36.000 0.00 0.00 43.16 4.40
5459 8489 5.857268 AGTTTCTGCAAAAGTTATGCCATT 58.143 33.333 0.00 0.00 43.16 3.16
5460 8490 6.290605 AGTTTCTGCAAAAGTTATGCCATTT 58.709 32.000 0.00 0.00 43.16 2.32
5461 8491 6.424812 AGTTTCTGCAAAAGTTATGCCATTTC 59.575 34.615 0.00 0.00 43.16 2.17
5468 8498 7.658982 TGCAAAAGTTATGCCATTTCATTTGTA 59.341 29.630 0.00 4.84 43.16 2.41
5478 8508 8.613060 TGCCATTTCATTTGTATTTTAGCAAA 57.387 26.923 0.00 0.00 38.68 3.68
5537 8567 5.328691 CGGCAGCGTATAAATTTTTGAGAA 58.671 37.500 0.00 0.00 0.00 2.87
5683 8727 3.859414 GAGCAGCCTCCGAGCCAT 61.859 66.667 0.00 0.00 31.68 4.40
5950 8997 1.066908 GATGCTAGTGAGAGAAGCGCT 59.933 52.381 2.64 2.64 39.14 5.92
5988 9035 7.464977 GCAATTGTGATTTGGCATATCTGTTTC 60.465 37.037 17.01 5.54 0.00 2.78
6002 9049 7.543172 GCATATCTGTTTCTTGCTTTTTCATGA 59.457 33.333 0.00 0.00 0.00 3.07
6006 9053 6.974622 TCTGTTTCTTGCTTTTTCATGAAGTC 59.025 34.615 8.41 0.45 33.55 3.01
6032 9083 0.890683 CAGTTCACCTGCCAAATCCC 59.109 55.000 0.00 0.00 33.59 3.85
6056 9107 2.596904 TACTACTGGGCTTCGATTGC 57.403 50.000 2.74 2.74 0.00 3.56
6073 9124 3.641437 TTGCTCGAAATTTGGGAACTG 57.359 42.857 0.00 0.00 0.00 3.16
6105 9156 2.035442 GTCGTTGGAGGAGCTTGCC 61.035 63.158 0.00 0.00 0.00 4.52
6128 9179 0.601558 GTGGTGGCTCTGTAGTTCGA 59.398 55.000 0.00 0.00 0.00 3.71
6138 9189 5.815740 GGCTCTGTAGTTCGATCCAAAATTA 59.184 40.000 0.00 0.00 0.00 1.40
6152 9203 9.438291 CGATCCAAAATTATGTGTTTCTCATAC 57.562 33.333 0.00 0.00 0.00 2.39
6186 9237 1.728323 TGTGTCCTTGTGAGATGGGA 58.272 50.000 0.00 0.00 0.00 4.37
6187 9238 1.625315 TGTGTCCTTGTGAGATGGGAG 59.375 52.381 0.00 0.00 0.00 4.30
6188 9239 1.065854 GTGTCCTTGTGAGATGGGAGG 60.066 57.143 0.00 0.00 0.00 4.30
6231 9282 5.368145 TCTCTGTGAAGCTAATGTGTGTTT 58.632 37.500 0.00 0.00 0.00 2.83
6233 9284 6.017934 TCTCTGTGAAGCTAATGTGTGTTTTC 60.018 38.462 0.00 0.00 0.00 2.29
6237 9288 4.334203 TGAAGCTAATGTGTGTTTTCGTGT 59.666 37.500 0.00 0.00 0.00 4.49
6335 9386 4.082125 CCTGATGGTTTGCTTCTTTACCT 58.918 43.478 0.00 0.00 0.00 3.08
6336 9387 4.082571 CCTGATGGTTTGCTTCTTTACCTG 60.083 45.833 0.00 0.00 0.00 4.00
6338 9389 5.626142 TGATGGTTTGCTTCTTTACCTGTA 58.374 37.500 0.00 0.00 0.00 2.74
6340 9391 6.719370 TGATGGTTTGCTTCTTTACCTGTATT 59.281 34.615 0.00 0.00 0.00 1.89
6342 9393 8.644374 ATGGTTTGCTTCTTTACCTGTATTTA 57.356 30.769 0.00 0.00 0.00 1.40
6350 9407 7.484959 GCTTCTTTACCTGTATTTACACAATGC 59.515 37.037 0.00 0.00 31.93 3.56
6354 9411 2.682856 CCTGTATTTACACAATGCGGCT 59.317 45.455 0.00 0.00 31.93 5.52
6365 9422 3.065786 CACAATGCGGCTGTTCTATTCAT 59.934 43.478 0.00 0.00 0.00 2.57
6375 9432 4.728882 GCTGTTCTATTCATTGCGTTCCAG 60.729 45.833 0.00 0.00 0.00 3.86
6380 9437 4.811024 TCTATTCATTGCGTTCCAGACATC 59.189 41.667 0.00 0.00 0.00 3.06
6382 9439 2.076100 TCATTGCGTTCCAGACATCAC 58.924 47.619 0.00 0.00 0.00 3.06
6384 9441 0.948623 TTGCGTTCCAGACATCACCG 60.949 55.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.561725 GCTAGGCAGACAAGCGAAAATAT 59.438 43.478 0.00 0.00 34.64 1.28
45 46 1.513622 TCGGTGATCGAAATCCGCA 59.486 52.632 16.75 6.96 45.86 5.69
144 153 2.673368 GACTTGATACCGCAACAAGAGG 59.327 50.000 12.04 0.00 42.12 3.69
199 208 8.462016 CCTCGAAAAGAAATTTCAGAACCATAT 58.538 33.333 19.99 0.00 46.42 1.78
221 230 2.841442 AAAGAGACCAAGTTCCCTCG 57.159 50.000 0.00 0.00 0.00 4.63
310 321 1.538512 GGTCGATATGCGTGGCTACTA 59.461 52.381 0.00 0.00 41.80 1.82
311 322 0.314302 GGTCGATATGCGTGGCTACT 59.686 55.000 0.00 0.00 41.80 2.57
312 323 0.031585 TGGTCGATATGCGTGGCTAC 59.968 55.000 0.00 0.00 41.80 3.58
313 324 0.031585 GTGGTCGATATGCGTGGCTA 59.968 55.000 0.00 0.00 41.80 3.93
314 325 1.227263 GTGGTCGATATGCGTGGCT 60.227 57.895 0.00 0.00 41.80 4.75
315 326 2.585869 CGTGGTCGATATGCGTGGC 61.586 63.158 0.00 0.00 41.80 5.01
316 327 1.065109 TCGTGGTCGATATGCGTGG 59.935 57.895 0.00 0.00 41.35 4.94
317 328 4.702020 TCGTGGTCGATATGCGTG 57.298 55.556 0.00 0.00 41.35 5.34
337 348 4.584743 TGTGCTACAGTAGTCATATCCCTG 59.415 45.833 9.42 0.00 0.00 4.45
362 373 5.967806 CCGAAAAGGAGGGATACACATCCT 61.968 50.000 3.79 0.00 46.01 3.24
364 375 3.118371 ACCGAAAAGGAGGGATACACATC 60.118 47.826 0.00 0.00 45.00 3.06
365 376 2.844348 ACCGAAAAGGAGGGATACACAT 59.156 45.455 0.00 0.00 45.00 3.21
367 378 3.345508 AACCGAAAAGGAGGGATACAC 57.654 47.619 0.00 0.00 45.00 2.90
369 380 6.709397 CCTTATAAACCGAAAAGGAGGGATAC 59.291 42.308 0.00 0.00 45.00 2.24
372 383 4.627013 GCCTTATAAACCGAAAAGGAGGGA 60.627 45.833 4.19 0.00 45.00 4.20
373 384 3.630769 GCCTTATAAACCGAAAAGGAGGG 59.369 47.826 4.19 0.00 45.00 4.30
374 385 4.524053 AGCCTTATAAACCGAAAAGGAGG 58.476 43.478 4.19 0.00 45.00 4.30
375 386 7.715686 AGATAAGCCTTATAAACCGAAAAGGAG 59.284 37.037 0.00 0.00 45.00 3.69
376 387 7.571025 AGATAAGCCTTATAAACCGAAAAGGA 58.429 34.615 0.00 0.00 45.00 3.36
381 1939 8.795842 TTTTGAGATAAGCCTTATAAACCGAA 57.204 30.769 0.00 0.00 0.00 4.30
429 1987 8.928448 ACACTAGTCCAATGACAACATATATCT 58.072 33.333 0.00 0.00 44.33 1.98
430 1988 9.547753 AACACTAGTCCAATGACAACATATATC 57.452 33.333 0.00 0.00 44.33 1.63
431 1989 9.905713 AAACACTAGTCCAATGACAACATATAT 57.094 29.630 0.00 0.00 44.33 0.86
445 3130 4.495565 TCCTTTCCCTAAACACTAGTCCA 58.504 43.478 0.00 0.00 0.00 4.02
450 3135 6.472887 CATGTTCTCCTTTCCCTAAACACTA 58.527 40.000 0.00 0.00 30.26 2.74
455 3140 4.589908 GAGCATGTTCTCCTTTCCCTAAA 58.410 43.478 1.76 0.00 0.00 1.85
456 3141 3.369471 CGAGCATGTTCTCCTTTCCCTAA 60.369 47.826 8.01 0.00 0.00 2.69
479 3164 1.500108 CGGTGCTTGTACAACGGTAA 58.500 50.000 3.59 0.00 46.85 2.85
481 3166 4.036977 CGGTGCTTGTACAACGGT 57.963 55.556 3.59 0.00 46.85 4.83
485 3170 1.004320 ATCCGCGGTGCTTGTACAA 60.004 52.632 27.15 8.28 0.00 2.41
559 3244 4.885270 TGGTGTTGGCGTGTGGGG 62.885 66.667 0.00 0.00 0.00 4.96
596 3281 0.827507 ACCTGCCCCATGTGTTTGTC 60.828 55.000 0.00 0.00 0.00 3.18
597 3282 0.480690 TACCTGCCCCATGTGTTTGT 59.519 50.000 0.00 0.00 0.00 2.83
598 3283 0.887933 GTACCTGCCCCATGTGTTTG 59.112 55.000 0.00 0.00 0.00 2.93
671 3359 1.121378 GGAGAACCCTAGCCTACACC 58.879 60.000 0.00 0.00 0.00 4.16
688 3381 0.392461 GCACAAGCGATAAGGGTGGA 60.392 55.000 0.00 0.00 0.00 4.02
723 3418 8.963725 TCATCAATCTGACTTGCTAAAATTGAT 58.036 29.630 0.00 0.00 40.91 2.57
725 3420 8.857216 GTTCATCAATCTGACTTGCTAAAATTG 58.143 33.333 0.00 0.00 0.00 2.32
763 3458 8.630037 ACCTAAAAGACGTTCATCAATCTTTTT 58.370 29.630 14.08 0.00 44.87 1.94
765 3460 7.444183 TCACCTAAAAGACGTTCATCAATCTTT 59.556 33.333 0.00 0.00 41.92 2.52
766 3461 6.934645 TCACCTAAAAGACGTTCATCAATCTT 59.065 34.615 0.00 0.00 32.78 2.40
767 3462 6.464222 TCACCTAAAAGACGTTCATCAATCT 58.536 36.000 0.00 0.00 0.00 2.40
768 3463 6.721571 TCACCTAAAAGACGTTCATCAATC 57.278 37.500 0.00 0.00 0.00 2.67
769 3464 7.687941 AATCACCTAAAAGACGTTCATCAAT 57.312 32.000 0.00 0.00 0.00 2.57
770 3465 7.504924 AAATCACCTAAAAGACGTTCATCAA 57.495 32.000 0.00 0.00 0.00 2.57
771 3466 7.118680 GGTAAATCACCTAAAAGACGTTCATCA 59.881 37.037 0.00 0.00 44.79 3.07
772 3467 7.461918 GGTAAATCACCTAAAAGACGTTCATC 58.538 38.462 0.00 0.00 44.79 2.92
773 3468 7.373778 GGTAAATCACCTAAAAGACGTTCAT 57.626 36.000 0.00 0.00 44.79 2.57
774 3469 6.790285 GGTAAATCACCTAAAAGACGTTCA 57.210 37.500 0.00 0.00 44.79 3.18
806 3585 3.047796 GCAGACTGCAAATTCACTTGTG 58.952 45.455 22.62 0.00 44.26 3.33
822 3601 2.489722 GAGGACAATCCCTTTTGCAGAC 59.510 50.000 0.00 0.00 37.19 3.51
870 3734 2.097466 ACTCGTGAAGTTTTTGCCACTG 59.903 45.455 0.00 0.00 33.03 3.66
897 3761 2.474410 AGAGTACTTTTCTTGGCCCG 57.526 50.000 0.00 0.00 0.00 6.13
1353 4252 1.265095 CTGCGCAGAGACACACAAAAT 59.735 47.619 33.66 0.00 0.00 1.82
1358 4257 3.418068 GCCTGCGCAGAGACACAC 61.418 66.667 38.06 13.93 34.03 3.82
1360 4259 3.117171 CAGCCTGCGCAGAGACAC 61.117 66.667 38.06 20.29 37.52 3.67
1362 4261 2.358003 AACAGCCTGCGCAGAGAC 60.358 61.111 38.06 25.17 37.52 3.36
1363 4262 2.047844 GAACAGCCTGCGCAGAGA 60.048 61.111 38.06 0.91 37.52 3.10
1364 4263 3.485431 CGAACAGCCTGCGCAGAG 61.485 66.667 38.06 26.98 37.52 3.35
1572 4475 0.890996 GCCGGGCAATAGATTCCAGG 60.891 60.000 15.62 0.00 38.11 4.45
1596 4499 3.521727 ACAAATCACTCTAGGGTCAGGT 58.478 45.455 0.00 0.00 0.00 4.00
1602 4505 4.160439 TGTGAGCTACAAATCACTCTAGGG 59.840 45.833 6.85 0.00 44.90 3.53
1635 4538 4.533222 CGTTCTCCAACACCAATTGTAAC 58.467 43.478 4.43 0.00 37.51 2.50
1679 4592 4.807304 TCTGTCTGTACAACTTTTCGTTCC 59.193 41.667 0.00 0.00 34.49 3.62
1683 4596 8.636843 GTTATACTCTGTCTGTACAACTTTTCG 58.363 37.037 0.00 0.00 34.49 3.46
1834 4747 7.222999 CCGCAAGAGTAAAAGAGATTAACCTAG 59.777 40.741 0.00 0.00 43.02 3.02
1935 4848 1.527034 TCACTTGATGCCTGCTTGAC 58.473 50.000 0.00 0.00 0.00 3.18
2049 4962 6.986817 ACAAGTAATATGGATCGAAGGAAGTG 59.013 38.462 0.00 0.00 0.00 3.16
2053 4966 5.769367 CGACAAGTAATATGGATCGAAGGA 58.231 41.667 0.00 0.00 0.00 3.36
2057 4970 4.277423 TGAGCGACAAGTAATATGGATCGA 59.723 41.667 0.00 0.00 0.00 3.59
2115 5028 1.901650 CTTGTCGCTCAAACGGAGGC 61.902 60.000 0.00 0.00 44.22 4.70
2164 5077 8.038944 TGTAAAAGATACATTCAGGGTCAGTAC 58.961 37.037 0.00 0.00 0.00 2.73
2171 5084 7.056635 AGATGGTGTAAAAGATACATTCAGGG 58.943 38.462 0.00 0.00 0.00 4.45
2188 5101 4.385825 TCGTTTTTAGCTGAAGATGGTGT 58.614 39.130 0.00 0.00 0.00 4.16
2229 5142 1.603171 ATGGCGTTGGTGTGCATCA 60.603 52.632 0.00 0.00 0.00 3.07
2242 5155 1.154093 CTGTGCTGCTTTCATGGCG 60.154 57.895 0.00 0.00 0.00 5.69
2327 5240 7.559486 AGCAGAACAGACAGACATAATAATCA 58.441 34.615 0.00 0.00 0.00 2.57
2332 5245 7.790027 AGAATAGCAGAACAGACAGACATAAT 58.210 34.615 0.00 0.00 0.00 1.28
2333 5246 7.123397 AGAGAATAGCAGAACAGACAGACATAA 59.877 37.037 0.00 0.00 0.00 1.90
2334 5247 6.605194 AGAGAATAGCAGAACAGACAGACATA 59.395 38.462 0.00 0.00 0.00 2.29
2375 5288 0.668401 GCCATCTGCCACAAAAGTGC 60.668 55.000 0.00 0.00 0.00 4.40
2413 5326 0.318107 CAGCTTTGGACTGCCGTTTG 60.318 55.000 0.00 0.00 36.79 2.93
2419 5332 2.338140 GCTTTACAGCTTTGGACTGC 57.662 50.000 0.00 0.00 43.51 4.40
2478 5391 4.504858 AGTCAGTAAAATAGCCAAGACCG 58.495 43.478 0.00 0.00 0.00 4.79
2486 5399 9.516314 AAGAAAACACAAAGTCAGTAAAATAGC 57.484 29.630 0.00 0.00 0.00 2.97
2489 5402 8.749354 AGGAAGAAAACACAAAGTCAGTAAAAT 58.251 29.630 0.00 0.00 0.00 1.82
2495 5408 5.567138 ACAGGAAGAAAACACAAAGTCAG 57.433 39.130 0.00 0.00 0.00 3.51
2498 5411 8.691661 ACATATACAGGAAGAAAACACAAAGT 57.308 30.769 0.00 0.00 0.00 2.66
2516 5429 9.307121 AGCAGCGATCTCAAAATATACATATAC 57.693 33.333 0.00 0.00 0.00 1.47
2611 5524 6.789262 ACATATAAAGCTGCTGTGTGAAATC 58.211 36.000 1.35 0.00 0.00 2.17
2696 5611 6.668645 TGGTAACTCAGGTGGCATTAATATT 58.331 36.000 0.00 0.00 37.61 1.28
2707 5622 4.122776 GTCTATGCATGGTAACTCAGGTG 58.877 47.826 10.16 0.00 37.61 4.00
2714 5629 6.683974 AAATCTGTGTCTATGCATGGTAAC 57.316 37.500 10.16 9.88 0.00 2.50
2795 5710 1.816835 ACATCGTACGGATCACTGTGT 59.183 47.619 16.52 5.26 36.89 3.72
2922 5838 9.739276 ATTTGGAGACTAAATATCAGAACAACA 57.261 29.630 0.00 0.00 0.00 3.33
2939 5855 7.226918 GCTAGGTAAATAGGTGAATTTGGAGAC 59.773 40.741 0.00 0.00 31.63 3.36
2940 5856 7.127339 AGCTAGGTAAATAGGTGAATTTGGAGA 59.873 37.037 0.00 0.00 32.42 3.71
2941 5857 7.283329 AGCTAGGTAAATAGGTGAATTTGGAG 58.717 38.462 0.00 0.00 32.42 3.86
2955 5872 5.187967 AGAGCAGTGTTACAGCTAGGTAAAT 59.812 40.000 0.00 0.00 41.18 1.40
3012 5931 9.675464 TTTACTTAGGACCATGAATCGTAAAAT 57.325 29.630 0.00 0.00 0.00 1.82
3018 5937 6.038161 TGCAATTTACTTAGGACCATGAATCG 59.962 38.462 0.00 0.00 0.00 3.34
3030 5949 3.869065 TCGGAGGGTGCAATTTACTTAG 58.131 45.455 0.00 0.00 0.00 2.18
3048 5967 8.979574 GGTATTTACAAGATTAGACAGAATCGG 58.020 37.037 0.00 0.00 40.20 4.18
3140 6096 9.470399 TCAACTGTTAGACTCCATATGTAACTA 57.530 33.333 12.00 4.36 0.00 2.24
3197 6161 7.568349 TGGCCCAATAAAACAATATTGCAATA 58.432 30.769 20.95 20.95 40.41 1.90
3198 6162 6.421485 TGGCCCAATAAAACAATATTGCAAT 58.579 32.000 17.56 17.56 40.41 3.56
3200 6164 5.188555 TCTGGCCCAATAAAACAATATTGCA 59.811 36.000 15.48 0.00 40.41 4.08
3201 6165 5.669477 TCTGGCCCAATAAAACAATATTGC 58.331 37.500 15.48 0.00 40.41 3.56
3202 6166 8.859090 TCTATCTGGCCCAATAAAACAATATTG 58.141 33.333 14.01 14.01 41.08 1.90
3209 6175 6.715347 ACAATCTATCTGGCCCAATAAAAC 57.285 37.500 0.00 0.00 0.00 2.43
3221 6187 6.035435 CAGACCGTTCTCAAACAATCTATCTG 59.965 42.308 0.00 0.00 34.93 2.90
3225 6191 3.994392 GCAGACCGTTCTCAAACAATCTA 59.006 43.478 0.00 0.00 34.93 1.98
3241 6207 4.097741 TGCACATGGTATTATTTGCAGACC 59.902 41.667 0.00 0.00 38.44 3.85
3244 6210 6.018588 CCAAATGCACATGGTATTATTTGCAG 60.019 38.462 10.75 0.00 44.19 4.41
3257 6223 4.562082 ACATTCAGAACCAAATGCACATG 58.438 39.130 0.00 0.00 36.54 3.21
3258 6224 4.877378 ACATTCAGAACCAAATGCACAT 57.123 36.364 0.00 0.00 36.54 3.21
3286 6252 9.503427 GTACCTGTCACAATAAGAAAATTATGC 57.497 33.333 0.00 0.00 0.00 3.14
3299 6265 3.485394 TGCAACATGTACCTGTCACAAT 58.515 40.909 0.00 0.00 0.00 2.71
3389 6355 7.573710 ACAATAGATTAAGGGCACATAGTTGA 58.426 34.615 0.00 0.00 0.00 3.18
3401 6367 8.388484 AGCAAGCTTATGACAATAGATTAAGG 57.612 34.615 0.00 0.00 0.00 2.69
3410 6376 5.709164 ACTTCAAGAGCAAGCTTATGACAAT 59.291 36.000 0.00 0.00 0.00 2.71
3456 6425 1.338973 CCGCCAGGATTGAATGATTGG 59.661 52.381 0.00 0.00 41.02 3.16
3473 6442 8.395633 ACATAGAAGTTTATATTGTTTGACCGC 58.604 33.333 0.00 0.00 0.00 5.68
3497 6466 0.337428 GGGGTGGAGGGAGTACTACA 59.663 60.000 7.57 0.00 0.00 2.74
3504 6473 0.468648 GTAATTCGGGGTGGAGGGAG 59.531 60.000 0.00 0.00 0.00 4.30
3505 6474 0.043637 AGTAATTCGGGGTGGAGGGA 59.956 55.000 0.00 0.00 0.00 4.20
3506 6475 0.916809 AAGTAATTCGGGGTGGAGGG 59.083 55.000 0.00 0.00 0.00 4.30
3507 6476 1.280998 ACAAGTAATTCGGGGTGGAGG 59.719 52.381 0.00 0.00 0.00 4.30
3508 6477 2.629051 GACAAGTAATTCGGGGTGGAG 58.371 52.381 0.00 0.00 0.00 3.86
3509 6478 1.066716 CGACAAGTAATTCGGGGTGGA 60.067 52.381 0.00 0.00 0.00 4.02
3510 6479 1.365699 CGACAAGTAATTCGGGGTGG 58.634 55.000 0.00 0.00 0.00 4.61
3513 6482 1.006832 CTGCGACAAGTAATTCGGGG 58.993 55.000 0.00 0.00 35.73 5.73
3515 6484 4.334443 CATTTCTGCGACAAGTAATTCGG 58.666 43.478 0.00 0.00 35.73 4.30
3516 6485 3.780801 GCATTTCTGCGACAAGTAATTCG 59.219 43.478 0.00 0.00 38.92 3.34
3556 6525 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
3557 6526 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
3558 6527 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
3559 6528 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
3560 6529 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
3561 6530 6.183360 TGTCGCAGAAATGGATGTATCTAGAA 60.183 38.462 0.00 0.00 39.69 2.10
3562 6531 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
3563 6532 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
3564 6533 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
3565 6534 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
3566 6535 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
3567 6536 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
3568 6537 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
3569 6538 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
3570 6539 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
3571 6540 5.647658 TGAATTACTTGTCGCAGAAATGGAT 59.352 36.000 0.00 0.00 39.69 3.41
3572 6541 5.000591 TGAATTACTTGTCGCAGAAATGGA 58.999 37.500 0.00 0.00 39.69 3.41
3573 6542 5.295431 TGAATTACTTGTCGCAGAAATGG 57.705 39.130 0.00 0.00 39.69 3.16
3574 6543 6.602179 TCTTGAATTACTTGTCGCAGAAATG 58.398 36.000 0.00 0.00 39.69 2.32
3575 6544 6.801539 TCTTGAATTACTTGTCGCAGAAAT 57.198 33.333 0.00 0.00 39.69 2.17
3576 6545 6.348458 CCATCTTGAATTACTTGTCGCAGAAA 60.348 38.462 0.00 0.00 39.69 2.52
3577 6546 5.122239 CCATCTTGAATTACTTGTCGCAGAA 59.878 40.000 0.00 0.00 39.69 3.02
3578 6547 4.631377 CCATCTTGAATTACTTGTCGCAGA 59.369 41.667 0.00 0.00 0.00 4.26
3579 6548 4.631377 TCCATCTTGAATTACTTGTCGCAG 59.369 41.667 0.00 0.00 0.00 5.18
3580 6549 4.574892 TCCATCTTGAATTACTTGTCGCA 58.425 39.130 0.00 0.00 0.00 5.10
3581 6550 4.034510 CCTCCATCTTGAATTACTTGTCGC 59.965 45.833 0.00 0.00 0.00 5.19
3582 6551 4.572389 CCCTCCATCTTGAATTACTTGTCG 59.428 45.833 0.00 0.00 0.00 4.35
3583 6552 5.745227 TCCCTCCATCTTGAATTACTTGTC 58.255 41.667 0.00 0.00 0.00 3.18
3584 6553 5.251700 ACTCCCTCCATCTTGAATTACTTGT 59.748 40.000 0.00 0.00 0.00 3.16
3585 6554 5.749462 ACTCCCTCCATCTTGAATTACTTG 58.251 41.667 0.00 0.00 0.00 3.16
3586 6555 7.348274 TCATACTCCCTCCATCTTGAATTACTT 59.652 37.037 0.00 0.00 0.00 2.24
3587 6556 6.846505 TCATACTCCCTCCATCTTGAATTACT 59.153 38.462 0.00 0.00 0.00 2.24
3588 6557 7.067496 TCATACTCCCTCCATCTTGAATTAC 57.933 40.000 0.00 0.00 0.00 1.89
3589 6558 7.690454 TTCATACTCCCTCCATCTTGAATTA 57.310 36.000 0.00 0.00 0.00 1.40
3590 6559 6.581388 TTCATACTCCCTCCATCTTGAATT 57.419 37.500 0.00 0.00 0.00 2.17
3591 6560 6.776887 ATTCATACTCCCTCCATCTTGAAT 57.223 37.500 0.00 0.00 0.00 2.57
3592 6561 7.690454 TTATTCATACTCCCTCCATCTTGAA 57.310 36.000 0.00 0.00 0.00 2.69
3593 6562 7.878621 ATTATTCATACTCCCTCCATCTTGA 57.121 36.000 0.00 0.00 0.00 3.02
3596 6565 9.343994 ACATTATTATTCATACTCCCTCCATCT 57.656 33.333 0.00 0.00 0.00 2.90
3597 6566 9.606631 GACATTATTATTCATACTCCCTCCATC 57.393 37.037 0.00 0.00 0.00 3.51
3598 6567 9.116080 TGACATTATTATTCATACTCCCTCCAT 57.884 33.333 0.00 0.00 0.00 3.41
3599 6568 8.504811 TGACATTATTATTCATACTCCCTCCA 57.495 34.615 0.00 0.00 0.00 3.86
3600 6569 9.965902 AATGACATTATTATTCATACTCCCTCC 57.034 33.333 0.00 0.00 29.64 4.30
3631 6600 8.836268 TCGACAAAATAACTACATTTACAGGT 57.164 30.769 0.00 0.00 0.00 4.00
3682 6653 7.646314 TGTATAAGGTTCTACGCTAAGCTTAG 58.354 38.462 26.20 26.20 45.11 2.18
3688 6659 8.681486 TGACTATGTATAAGGTTCTACGCTAA 57.319 34.615 0.00 0.00 0.00 3.09
3689 6660 7.094890 GCTGACTATGTATAAGGTTCTACGCTA 60.095 40.741 0.00 0.00 0.00 4.26
3717 6688 3.073678 CAAATGACACATGAAGGACCGA 58.926 45.455 0.00 0.00 0.00 4.69
3718 6689 2.813754 ACAAATGACACATGAAGGACCG 59.186 45.455 0.00 0.00 0.00 4.79
3719 6690 5.677091 GCATACAAATGACACATGAAGGACC 60.677 44.000 0.00 0.00 34.84 4.46
3720 6691 5.106197 TGCATACAAATGACACATGAAGGAC 60.106 40.000 0.00 0.00 34.84 3.85
3767 6742 9.578576 TGCTATTAGAAATCCAATCAAGCTTAT 57.421 29.630 0.00 0.00 0.00 1.73
3773 6748 8.985315 ACTCATGCTATTAGAAATCCAATCAA 57.015 30.769 0.00 0.00 0.00 2.57
3776 6751 8.159447 TGCTACTCATGCTATTAGAAATCCAAT 58.841 33.333 0.00 0.00 0.00 3.16
3779 6754 6.091986 GCTGCTACTCATGCTATTAGAAATCC 59.908 42.308 0.00 0.00 0.00 3.01
3803 6778 5.105063 GGAAAACCAATAGAAAGCTCATGC 58.895 41.667 0.00 0.00 40.05 4.06
3823 6798 0.948678 GCCGCACAAAGTTACTGGAA 59.051 50.000 0.00 0.00 0.00 3.53
3866 6841 0.108138 CACGGGAACAGGAAGCCTAG 60.108 60.000 0.00 0.00 29.64 3.02
3875 6850 1.369091 GCTGCCATACACGGGAACAG 61.369 60.000 0.00 0.00 0.00 3.16
3881 6856 2.011741 TACTCCGCTGCCATACACGG 62.012 60.000 0.00 0.00 41.45 4.94
3905 6880 0.605319 GGGATTGTCGTGTGCTCCAA 60.605 55.000 0.00 0.00 0.00 3.53
3932 6907 2.708861 TGTGGCCTTTTCCTTGAGAGTA 59.291 45.455 3.32 0.00 0.00 2.59
3933 6908 1.494721 TGTGGCCTTTTCCTTGAGAGT 59.505 47.619 3.32 0.00 0.00 3.24
3936 6911 4.530875 AGATATGTGGCCTTTTCCTTGAG 58.469 43.478 3.32 0.00 0.00 3.02
3942 6917 4.775236 AGACAGAGATATGTGGCCTTTTC 58.225 43.478 3.32 0.00 32.25 2.29
3950 6925 7.993821 AATGTTAACGAGACAGAGATATGTG 57.006 36.000 0.26 0.00 32.25 3.21
4040 7018 4.628333 CCAACAGAGCAATTATTTTGCCTG 59.372 41.667 18.64 18.64 45.98 4.85
4055 7033 2.813754 TGAATTTTCCTCGCCAACAGAG 59.186 45.455 0.00 0.00 35.60 3.35
4064 7042 5.182001 ACTTTCTGTCCATGAATTTTCCTCG 59.818 40.000 0.00 0.00 0.00 4.63
4295 7273 4.496507 GCATCGAAAGTAGAAAGATTGGGC 60.497 45.833 0.00 0.00 0.00 5.36
4442 7420 1.475280 TGGAAGATAGTACGCGCTGTT 59.525 47.619 5.73 0.00 0.00 3.16
4466 7444 9.321562 AGAATATAATTTGCAAATTTGAGCAGG 57.678 29.630 35.18 0.00 42.39 4.85
4492 7470 5.168569 CCAGCAGTTGTAAGAAAGATACGA 58.831 41.667 0.00 0.00 0.00 3.43
4493 7471 4.330074 CCCAGCAGTTGTAAGAAAGATACG 59.670 45.833 0.00 0.00 0.00 3.06
4501 7479 3.788227 ACATTCCCAGCAGTTGTAAGA 57.212 42.857 0.00 0.00 0.00 2.10
4525 7503 7.987268 CAAATAGTGCTACGACATCTTTAGA 57.013 36.000 0.00 0.00 0.00 2.10
4549 7527 6.280643 CCCCTTTAAACAGGCTTTTATATGC 58.719 40.000 0.00 0.00 31.69 3.14
4550 7528 6.685368 GCCCCCTTTAAACAGGCTTTTATATG 60.685 42.308 9.96 0.00 40.57 1.78
4551 7529 5.365605 GCCCCCTTTAAACAGGCTTTTATAT 59.634 40.000 9.96 0.00 40.57 0.86
4552 7530 4.712829 GCCCCCTTTAAACAGGCTTTTATA 59.287 41.667 9.96 0.00 40.57 0.98
4694 7677 1.081906 GTGCGTGCTGTCCAACATG 60.082 57.895 0.00 0.00 0.00 3.21
4822 7807 3.024547 CGAGTTCAGGAGGAGGTTATCA 58.975 50.000 0.00 0.00 0.00 2.15
5038 8023 3.609409 GCTTCTTGCGGTGTTCTAAAAGG 60.609 47.826 0.00 0.00 0.00 3.11
5074 8059 3.072038 TGATCAGACATCCATCCATCCAC 59.928 47.826 0.00 0.00 0.00 4.02
5076 8061 4.571369 ATGATCAGACATCCATCCATCC 57.429 45.455 0.09 0.00 0.00 3.51
5117 8112 6.044871 AGGCCATGGTTAGCTTTCTTCTATAT 59.955 38.462 14.67 0.00 0.00 0.86
5229 8228 9.751542 GCCAGTAAATGCTATATATACAGGTAG 57.248 37.037 0.00 0.00 0.00 3.18
5230 8229 9.262240 TGCCAGTAAATGCTATATATACAGGTA 57.738 33.333 0.00 0.00 0.00 3.08
5291 8314 5.120830 GGTACAGCAACATAGTCTTCAACTG 59.879 44.000 0.00 0.00 39.11 3.16
5293 8316 5.238583 AGGTACAGCAACATAGTCTTCAAC 58.761 41.667 0.00 0.00 0.00 3.18
5324 8349 9.793252 ATAATTACTTTACTTTGCAGATGCTTG 57.207 29.630 6.35 0.00 42.66 4.01
5346 8374 4.812091 TCCGCAAGCAAATACGTACATAAT 59.188 37.500 0.00 0.00 0.00 1.28
5347 8375 4.182339 TCCGCAAGCAAATACGTACATAA 58.818 39.130 0.00 0.00 0.00 1.90
5348 8376 3.783191 TCCGCAAGCAAATACGTACATA 58.217 40.909 0.00 0.00 0.00 2.29
5349 8377 2.623535 TCCGCAAGCAAATACGTACAT 58.376 42.857 0.00 0.00 0.00 2.29
5354 8382 2.241722 CACTTTCCGCAAGCAAATACG 58.758 47.619 0.00 0.00 35.65 3.06
5355 8383 3.282831 ACACTTTCCGCAAGCAAATAC 57.717 42.857 0.00 0.00 35.65 1.89
5365 8393 4.217754 TGATGTTGTTAACACTTTCCGC 57.782 40.909 8.07 0.00 45.50 5.54
5367 8395 4.923281 GGCATGATGTTGTTAACACTTTCC 59.077 41.667 8.07 0.00 45.50 3.13
5380 8409 7.493320 GTCATTTATCAACATTGGCATGATGTT 59.507 33.333 10.92 10.92 45.80 2.71
5399 8428 8.313292 CCATTTTCCAAATCTTCAGGTCATTTA 58.687 33.333 0.00 0.00 0.00 1.40
5421 8451 7.707624 TGCAGAAACTCATAAGAAATCCATT 57.292 32.000 0.00 0.00 0.00 3.16
5429 8459 8.023128 GCATAACTTTTGCAGAAACTCATAAGA 58.977 33.333 0.00 0.00 39.90 2.10
5430 8460 7.274250 GGCATAACTTTTGCAGAAACTCATAAG 59.726 37.037 6.55 0.00 41.95 1.73
5431 8461 7.090173 GGCATAACTTTTGCAGAAACTCATAA 58.910 34.615 6.55 0.00 41.95 1.90
5432 8462 6.208402 TGGCATAACTTTTGCAGAAACTCATA 59.792 34.615 6.55 0.00 41.95 2.15
5433 8463 5.010922 TGGCATAACTTTTGCAGAAACTCAT 59.989 36.000 6.55 0.00 41.95 2.90
5434 8464 4.340666 TGGCATAACTTTTGCAGAAACTCA 59.659 37.500 6.55 0.00 41.95 3.41
5435 8465 4.870363 TGGCATAACTTTTGCAGAAACTC 58.130 39.130 6.55 0.00 41.95 3.01
5436 8466 4.935352 TGGCATAACTTTTGCAGAAACT 57.065 36.364 6.55 0.00 41.95 2.66
5437 8467 6.202570 TGAAATGGCATAACTTTTGCAGAAAC 59.797 34.615 0.00 0.00 41.95 2.78
5438 8468 6.286758 TGAAATGGCATAACTTTTGCAGAAA 58.713 32.000 0.00 0.00 41.95 2.52
5439 8469 5.851720 TGAAATGGCATAACTTTTGCAGAA 58.148 33.333 0.00 0.00 41.95 3.02
5440 8470 5.465532 TGAAATGGCATAACTTTTGCAGA 57.534 34.783 0.00 0.00 41.95 4.26
5441 8471 6.730960 AATGAAATGGCATAACTTTTGCAG 57.269 33.333 0.00 0.00 41.95 4.41
5442 8472 6.485984 ACAAATGAAATGGCATAACTTTTGCA 59.514 30.769 25.85 10.57 41.95 4.08
5443 8473 6.901265 ACAAATGAAATGGCATAACTTTTGC 58.099 32.000 25.85 6.31 39.41 3.68
5450 8480 9.881649 TGCTAAAATACAAATGAAATGGCATAA 57.118 25.926 0.00 0.00 0.00 1.90
5451 8481 9.881649 TTGCTAAAATACAAATGAAATGGCATA 57.118 25.926 0.00 0.00 0.00 3.14
5452 8482 8.789825 TTGCTAAAATACAAATGAAATGGCAT 57.210 26.923 0.00 0.00 0.00 4.40
5453 8483 8.613060 TTTGCTAAAATACAAATGAAATGGCA 57.387 26.923 0.00 0.00 31.09 4.92
5537 8567 4.625742 CGGTGACACGTTGATAAATTCTCT 59.374 41.667 0.00 0.00 0.00 3.10
5628 8658 1.003051 GCAGGGGTTAGGGGAGAGA 59.997 63.158 0.00 0.00 0.00 3.10
5630 8660 2.365105 CGCAGGGGTTAGGGGAGA 60.365 66.667 0.00 0.00 0.00 3.71
5683 8727 3.992641 TGTGGAGGAGGGCGGAGA 61.993 66.667 0.00 0.00 0.00 3.71
5913 8960 0.038159 ATCGTAGGCCATAGCTTCGC 60.038 55.000 5.01 0.00 39.73 4.70
5929 8976 1.752753 CGCTTCTCTCACTAGCATCG 58.247 55.000 0.00 0.00 34.62 3.84
5968 9015 5.517770 GCAAGAAACAGATATGCCAAATCAC 59.482 40.000 0.00 0.00 0.00 3.06
5988 9035 3.667261 CAGCGACTTCATGAAAAAGCAAG 59.333 43.478 22.34 14.38 0.00 4.01
6002 9049 2.086054 GGTGAACTGATCAGCGACTT 57.914 50.000 22.83 9.30 45.70 3.01
6032 9083 4.592485 ATCGAAGCCCAGTAGTATCAAG 57.408 45.455 0.00 0.00 0.00 3.02
6056 9107 3.857010 GCAACCAGTTCCCAAATTTCGAG 60.857 47.826 0.00 0.00 0.00 4.04
6071 9122 2.699954 ACGACCAAATCTAGCAACCAG 58.300 47.619 0.00 0.00 0.00 4.00
6073 9124 2.161609 CCAACGACCAAATCTAGCAACC 59.838 50.000 0.00 0.00 0.00 3.77
6105 9156 0.033504 ACTACAGAGCCACCACAACG 59.966 55.000 0.00 0.00 0.00 4.10
6138 9189 7.411486 AGTGCTACTAGTATGAGAAACACAT 57.589 36.000 2.33 0.00 0.00 3.21
6152 9203 7.649705 CACAAGGACACATTATAGTGCTACTAG 59.350 40.741 0.00 0.00 43.23 2.57
6186 9237 7.676468 AGAGAAAATTCTAAGACCACTCTACCT 59.324 37.037 0.00 0.00 37.73 3.08
6187 9238 7.762159 CAGAGAAAATTCTAAGACCACTCTACC 59.238 40.741 0.00 0.00 37.73 3.18
6188 9239 8.308207 ACAGAGAAAATTCTAAGACCACTCTAC 58.692 37.037 0.00 0.00 37.73 2.59
6231 9282 3.462483 TCCAGCTCTACAAAACACGAA 57.538 42.857 0.00 0.00 0.00 3.85
6233 9284 3.058914 CCTTTCCAGCTCTACAAAACACG 60.059 47.826 0.00 0.00 0.00 4.49
6237 9288 4.335416 CATCCCTTTCCAGCTCTACAAAA 58.665 43.478 0.00 0.00 0.00 2.44
6335 9386 3.078097 ACAGCCGCATTGTGTAAATACA 58.922 40.909 0.00 0.00 0.00 2.29
6336 9387 3.757745 ACAGCCGCATTGTGTAAATAC 57.242 42.857 0.00 0.00 0.00 1.89
6338 9389 2.819608 AGAACAGCCGCATTGTGTAAAT 59.180 40.909 0.00 0.00 0.00 1.40
6340 9391 1.890876 AGAACAGCCGCATTGTGTAA 58.109 45.000 0.00 0.00 0.00 2.41
6342 9393 2.113860 ATAGAACAGCCGCATTGTGT 57.886 45.000 0.00 0.00 0.00 3.72
6350 9407 1.665679 ACGCAATGAATAGAACAGCCG 59.334 47.619 0.00 0.00 0.00 5.52
6354 9411 4.391830 GTCTGGAACGCAATGAATAGAACA 59.608 41.667 0.00 0.00 0.00 3.18
6365 9422 0.948623 CGGTGATGTCTGGAACGCAA 60.949 55.000 0.00 0.00 0.00 4.85



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.