Multiple sequence alignment - TraesCS2B01G185900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G185900 chr2B 100.000 4136 0 0 1 4136 161017594 161021729 0.000000e+00 7638.0
1 TraesCS2B01G185900 chr2B 82.609 230 33 6 363 589 46679772 46679547 3.260000e-46 196.0
2 TraesCS2B01G185900 chr2B 86.857 175 21 2 3592 3766 161153237 161153409 1.170000e-45 195.0
3 TraesCS2B01G185900 chr2B 78.261 322 44 18 276 589 713865004 713865307 2.540000e-42 183.0
4 TraesCS2B01G185900 chr2B 90.265 113 8 3 3967 4079 161153522 161153631 1.200000e-30 145.0
5 TraesCS2B01G185900 chr2B 92.632 95 6 1 3796 3889 775396069 775395975 7.210000e-28 135.0
6 TraesCS2B01G185900 chr2D 94.940 2767 106 10 1025 3764 111233201 111235960 0.000000e+00 4303.0
7 TraesCS2B01G185900 chr2D 90.977 266 17 3 3877 4136 111236016 111236280 6.580000e-93 351.0
8 TraesCS2B01G185900 chr2D 84.566 311 35 9 280 589 73327019 73327317 3.130000e-76 296.0
9 TraesCS2B01G185900 chr2D 100.000 35 0 0 3767 3801 111235987 111236021 9.600000e-07 65.8
10 TraesCS2B01G185900 chr2A 93.264 2806 144 13 988 3766 109595399 109598186 0.000000e+00 4093.0
11 TraesCS2B01G185900 chr2A 91.011 267 16 2 3877 4136 109598240 109598505 1.830000e-93 353.0
12 TraesCS2B01G185900 chr2A 90.196 102 9 1 3783 3883 539588892 539588993 9.330000e-27 132.0
13 TraesCS2B01G185900 chr7A 81.144 647 72 26 277 890 114729589 114730218 1.350000e-129 473.0
14 TraesCS2B01G185900 chr7A 82.600 500 52 19 468 935 164386556 164386060 3.850000e-110 409.0
15 TraesCS2B01G185900 chr7A 80.303 594 62 26 277 834 648888086 648888660 8.330000e-107 398.0
16 TraesCS2B01G185900 chr7A 79.747 316 47 13 280 589 12006331 12006027 3.240000e-51 213.0
17 TraesCS2B01G185900 chr7B 82.600 500 53 18 468 935 125395655 125395158 1.070000e-110 411.0
18 TraesCS2B01G185900 chr7B 79.560 318 50 12 280 589 31557510 31557200 3.240000e-51 213.0
19 TraesCS2B01G185900 chr7B 88.785 107 7 4 3787 3889 28056231 28056126 4.340000e-25 126.0
20 TraesCS2B01G185900 chr1D 88.253 332 35 3 588 917 348037408 348037079 1.080000e-105 394.0
21 TraesCS2B01G185900 chr1D 92.763 152 11 0 438 589 348037589 348037438 1.940000e-53 220.0
22 TraesCS2B01G185900 chr6D 78.730 630 67 32 354 919 4866176 4866802 3.930000e-95 359.0
23 TraesCS2B01G185900 chr1A 80.556 288 41 11 280 560 583870737 583871016 1.510000e-49 207.0
24 TraesCS2B01G185900 chr1B 79.114 316 50 13 280 589 553123029 553122724 1.950000e-48 204.0
25 TraesCS2B01G185900 chrUn 82.609 230 33 6 363 589 247059842 247059617 3.260000e-46 196.0
26 TraesCS2B01G185900 chrUn 86.842 152 18 1 682 831 37380339 37380188 7.110000e-38 169.0
27 TraesCS2B01G185900 chr6A 79.478 268 42 12 280 541 522635091 522634831 1.180000e-40 178.0
28 TraesCS2B01G185900 chr6A 90.909 99 7 1 3790 3886 563127902 563128000 9.330000e-27 132.0
29 TraesCS2B01G185900 chr4D 95.506 89 2 1 3795 3881 62309585 62309497 1.550000e-29 141.0
30 TraesCS2B01G185900 chr4D 91.837 98 5 2 3789 3883 478668920 478669017 2.590000e-27 134.0
31 TraesCS2B01G185900 chr5D 91.176 102 7 1 3788 3887 49290846 49290745 2.010000e-28 137.0
32 TraesCS2B01G185900 chr5B 90.291 103 7 2 3790 3889 331307498 331307396 9.330000e-27 132.0
33 TraesCS2B01G185900 chr3A 89.320 103 9 1 3788 3888 199541370 199541472 1.210000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G185900 chr2B 161017594 161021729 4135 False 7638.000000 7638 100.000000 1 4136 1 chr2B.!!$F1 4135
1 TraesCS2B01G185900 chr2D 111233201 111236280 3079 False 1573.266667 4303 95.305667 1025 4136 3 chr2D.!!$F2 3111
2 TraesCS2B01G185900 chr2A 109595399 109598505 3106 False 2223.000000 4093 92.137500 988 4136 2 chr2A.!!$F2 3148
3 TraesCS2B01G185900 chr7A 114729589 114730218 629 False 473.000000 473 81.144000 277 890 1 chr7A.!!$F1 613
4 TraesCS2B01G185900 chr7A 648888086 648888660 574 False 398.000000 398 80.303000 277 834 1 chr7A.!!$F2 557
5 TraesCS2B01G185900 chr1D 348037079 348037589 510 True 307.000000 394 90.508000 438 917 2 chr1D.!!$R1 479
6 TraesCS2B01G185900 chr6D 4866176 4866802 626 False 359.000000 359 78.730000 354 919 1 chr6D.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 1035 0.036105 ACAGAAGTGCATGCATCCGA 60.036 50.0 25.64 0.00 0.00 4.55 F
1022 1093 0.752658 CATATCACTGCACCCCGAGA 59.247 55.0 0.00 0.00 0.00 4.04 F
1420 1494 1.194121 TCTACTGCAAGCTCCCTGCA 61.194 55.0 10.95 10.95 45.94 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2312 2386 0.036010 AGAGAGGGAACAATGCCGTG 60.036 55.0 0.0 0.0 42.97 4.94 R
3015 3089 1.308998 AAAGTCACCGCAAGAACAGG 58.691 50.0 0.0 0.0 43.02 4.00 R
3279 3376 0.321919 TGCTGATGTTCTGGTGGCTC 60.322 55.0 0.0 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.974399 AGGAGAAACCAGAGTTAAACCTG 58.026 43.478 0.00 0.00 42.04 4.00
23 24 4.412528 AGGAGAAACCAGAGTTAAACCTGT 59.587 41.667 0.00 0.00 42.04 4.00
24 25 4.755629 GGAGAAACCAGAGTTAAACCTGTC 59.244 45.833 5.10 0.00 34.19 3.51
25 26 4.377897 AGAAACCAGAGTTAAACCTGTCG 58.622 43.478 5.10 0.00 34.19 4.35
26 27 4.100498 AGAAACCAGAGTTAAACCTGTCGA 59.900 41.667 5.10 0.00 34.19 4.20
27 28 4.411256 AACCAGAGTTAAACCTGTCGAA 57.589 40.909 0.00 0.00 33.27 3.71
28 29 3.725490 ACCAGAGTTAAACCTGTCGAAC 58.275 45.455 0.00 0.00 0.00 3.95
29 30 3.387050 ACCAGAGTTAAACCTGTCGAACT 59.613 43.478 0.00 0.00 34.88 3.01
30 31 4.586001 ACCAGAGTTAAACCTGTCGAACTA 59.414 41.667 0.00 0.00 32.37 2.24
31 32 5.069516 ACCAGAGTTAAACCTGTCGAACTAA 59.930 40.000 0.00 0.00 32.37 2.24
32 33 5.634020 CCAGAGTTAAACCTGTCGAACTAAG 59.366 44.000 0.00 0.00 32.37 2.18
33 34 6.214399 CAGAGTTAAACCTGTCGAACTAAGT 58.786 40.000 0.00 0.00 32.37 2.24
34 35 6.362820 CAGAGTTAAACCTGTCGAACTAAGTC 59.637 42.308 0.00 0.00 32.37 3.01
35 36 6.264970 AGAGTTAAACCTGTCGAACTAAGTCT 59.735 38.462 0.00 0.00 32.37 3.24
36 37 6.214399 AGTTAAACCTGTCGAACTAAGTCTG 58.786 40.000 0.00 0.00 30.45 3.51
37 38 2.726832 ACCTGTCGAACTAAGTCTGC 57.273 50.000 0.00 0.00 0.00 4.26
38 39 1.961394 ACCTGTCGAACTAAGTCTGCA 59.039 47.619 0.00 0.00 0.00 4.41
39 40 2.364324 ACCTGTCGAACTAAGTCTGCAA 59.636 45.455 0.00 0.00 0.00 4.08
40 41 2.989840 CCTGTCGAACTAAGTCTGCAAG 59.010 50.000 0.00 0.00 0.00 4.01
41 42 3.553096 CCTGTCGAACTAAGTCTGCAAGT 60.553 47.826 0.00 0.00 33.76 3.16
42 43 3.381045 TGTCGAACTAAGTCTGCAAGTG 58.619 45.455 0.00 0.00 33.76 3.16
43 44 3.067601 TGTCGAACTAAGTCTGCAAGTGA 59.932 43.478 0.00 0.00 33.76 3.41
44 45 4.238514 GTCGAACTAAGTCTGCAAGTGAT 58.761 43.478 0.00 0.00 33.76 3.06
45 46 4.686554 GTCGAACTAAGTCTGCAAGTGATT 59.313 41.667 0.00 0.00 33.76 2.57
46 47 5.177696 GTCGAACTAAGTCTGCAAGTGATTT 59.822 40.000 0.00 0.00 33.76 2.17
47 48 5.758296 TCGAACTAAGTCTGCAAGTGATTTT 59.242 36.000 0.00 0.00 33.76 1.82
48 49 6.926826 TCGAACTAAGTCTGCAAGTGATTTTA 59.073 34.615 0.00 0.00 33.76 1.52
49 50 7.439955 TCGAACTAAGTCTGCAAGTGATTTTAA 59.560 33.333 0.00 0.00 33.76 1.52
50 51 7.742089 CGAACTAAGTCTGCAAGTGATTTTAAG 59.258 37.037 0.00 0.00 33.76 1.85
51 52 8.677148 AACTAAGTCTGCAAGTGATTTTAAGA 57.323 30.769 0.00 0.00 33.76 2.10
52 53 8.089115 ACTAAGTCTGCAAGTGATTTTAAGAC 57.911 34.615 0.00 0.00 33.76 3.01
53 54 5.597813 AGTCTGCAAGTGATTTTAAGACG 57.402 39.130 0.00 0.00 33.76 4.18
54 55 4.452455 AGTCTGCAAGTGATTTTAAGACGG 59.548 41.667 0.00 0.00 33.76 4.79
55 56 4.213482 GTCTGCAAGTGATTTTAAGACGGT 59.787 41.667 0.00 0.00 33.76 4.83
56 57 4.819630 TCTGCAAGTGATTTTAAGACGGTT 59.180 37.500 0.00 0.00 33.76 4.44
57 58 5.298276 TCTGCAAGTGATTTTAAGACGGTTT 59.702 36.000 0.00 0.00 33.76 3.27
58 59 5.897050 TGCAAGTGATTTTAAGACGGTTTT 58.103 33.333 0.00 0.00 0.00 2.43
59 60 5.746245 TGCAAGTGATTTTAAGACGGTTTTG 59.254 36.000 0.00 0.00 0.00 2.44
60 61 5.746721 GCAAGTGATTTTAAGACGGTTTTGT 59.253 36.000 0.00 0.00 0.00 2.83
61 62 6.913673 GCAAGTGATTTTAAGACGGTTTTGTA 59.086 34.615 0.00 0.00 0.00 2.41
62 63 7.432838 GCAAGTGATTTTAAGACGGTTTTGTAA 59.567 33.333 0.00 0.00 0.00 2.41
63 64 9.458374 CAAGTGATTTTAAGACGGTTTTGTAAT 57.542 29.630 0.00 0.00 0.00 1.89
70 71 8.859517 TTTAAGACGGTTTTGTAATTTTGAGG 57.140 30.769 0.00 0.00 0.00 3.86
71 72 5.447624 AGACGGTTTTGTAATTTTGAGGG 57.552 39.130 0.00 0.00 0.00 4.30
72 73 4.279922 AGACGGTTTTGTAATTTTGAGGGG 59.720 41.667 0.00 0.00 0.00 4.79
73 74 3.322541 ACGGTTTTGTAATTTTGAGGGGG 59.677 43.478 0.00 0.00 0.00 5.40
74 75 3.322541 CGGTTTTGTAATTTTGAGGGGGT 59.677 43.478 0.00 0.00 0.00 4.95
75 76 4.523558 CGGTTTTGTAATTTTGAGGGGGTA 59.476 41.667 0.00 0.00 0.00 3.69
76 77 5.010820 CGGTTTTGTAATTTTGAGGGGGTAA 59.989 40.000 0.00 0.00 0.00 2.85
77 78 6.295405 CGGTTTTGTAATTTTGAGGGGGTAAT 60.295 38.462 0.00 0.00 0.00 1.89
78 79 7.455058 GGTTTTGTAATTTTGAGGGGGTAATT 58.545 34.615 0.00 0.00 0.00 1.40
79 80 7.940137 GGTTTTGTAATTTTGAGGGGGTAATTT 59.060 33.333 0.00 0.00 0.00 1.82
80 81 9.999660 GTTTTGTAATTTTGAGGGGGTAATTTA 57.000 29.630 0.00 0.00 0.00 1.40
82 83 9.603189 TTTGTAATTTTGAGGGGGTAATTTAGA 57.397 29.630 0.00 0.00 0.00 2.10
83 84 8.584063 TGTAATTTTGAGGGGGTAATTTAGAC 57.416 34.615 0.00 0.00 0.00 2.59
84 85 8.395605 TGTAATTTTGAGGGGGTAATTTAGACT 58.604 33.333 0.00 0.00 0.00 3.24
85 86 7.718334 AATTTTGAGGGGGTAATTTAGACTG 57.282 36.000 0.00 0.00 0.00 3.51
86 87 4.855298 TTGAGGGGGTAATTTAGACTGG 57.145 45.455 0.00 0.00 0.00 4.00
87 88 2.508300 TGAGGGGGTAATTTAGACTGGC 59.492 50.000 0.00 0.00 0.00 4.85
88 89 2.508300 GAGGGGGTAATTTAGACTGGCA 59.492 50.000 0.00 0.00 0.00 4.92
89 90 3.131252 AGGGGGTAATTTAGACTGGCAT 58.869 45.455 0.00 0.00 0.00 4.40
90 91 3.138468 AGGGGGTAATTTAGACTGGCATC 59.862 47.826 0.00 0.00 0.00 3.91
91 92 3.139077 GGGGTAATTTAGACTGGCATCG 58.861 50.000 0.00 0.00 0.00 3.84
92 93 3.181458 GGGGTAATTTAGACTGGCATCGA 60.181 47.826 0.00 0.00 0.00 3.59
93 94 3.808174 GGGTAATTTAGACTGGCATCGAC 59.192 47.826 0.00 0.00 0.00 4.20
94 95 4.443034 GGGTAATTTAGACTGGCATCGACT 60.443 45.833 0.00 0.00 0.00 4.18
95 96 5.116882 GGTAATTTAGACTGGCATCGACTT 58.883 41.667 0.00 0.00 0.00 3.01
96 97 5.585047 GGTAATTTAGACTGGCATCGACTTT 59.415 40.000 0.00 0.00 0.00 2.66
97 98 6.759827 GGTAATTTAGACTGGCATCGACTTTA 59.240 38.462 0.00 0.00 0.00 1.85
98 99 6.910536 AATTTAGACTGGCATCGACTTTAG 57.089 37.500 0.00 0.00 0.00 1.85
99 100 2.969628 AGACTGGCATCGACTTTAGG 57.030 50.000 0.00 0.00 0.00 2.69
100 101 1.482593 AGACTGGCATCGACTTTAGGG 59.517 52.381 0.00 0.00 0.00 3.53
101 102 1.207329 GACTGGCATCGACTTTAGGGT 59.793 52.381 0.00 0.00 0.00 4.34
102 103 1.628846 ACTGGCATCGACTTTAGGGTT 59.371 47.619 0.00 0.00 0.00 4.11
103 104 2.009774 CTGGCATCGACTTTAGGGTTG 58.990 52.381 0.00 0.00 0.00 3.77
104 105 1.626321 TGGCATCGACTTTAGGGTTGA 59.374 47.619 0.00 0.00 34.55 3.18
105 106 2.039216 TGGCATCGACTTTAGGGTTGAA 59.961 45.455 0.00 0.00 33.86 2.69
106 107 3.078837 GGCATCGACTTTAGGGTTGAAA 58.921 45.455 0.00 0.00 33.86 2.69
107 108 3.119955 GGCATCGACTTTAGGGTTGAAAC 60.120 47.826 0.00 0.00 33.86 2.78
108 109 3.751698 GCATCGACTTTAGGGTTGAAACT 59.248 43.478 0.00 0.00 33.86 2.66
109 110 4.215613 GCATCGACTTTAGGGTTGAAACTT 59.784 41.667 0.00 0.00 33.86 2.66
110 111 5.278315 GCATCGACTTTAGGGTTGAAACTTT 60.278 40.000 0.00 0.00 33.86 2.66
111 112 5.996669 TCGACTTTAGGGTTGAAACTTTC 57.003 39.130 0.00 0.00 0.00 2.62
112 113 5.430007 TCGACTTTAGGGTTGAAACTTTCA 58.570 37.500 0.00 0.00 38.04 2.69
113 114 5.526111 TCGACTTTAGGGTTGAAACTTTCAG 59.474 40.000 4.43 0.00 41.38 3.02
114 115 5.296035 CGACTTTAGGGTTGAAACTTTCAGT 59.704 40.000 4.43 0.00 41.38 3.41
115 116 6.451064 ACTTTAGGGTTGAAACTTTCAGTG 57.549 37.500 4.43 0.00 41.38 3.66
116 117 5.359860 ACTTTAGGGTTGAAACTTTCAGTGG 59.640 40.000 4.43 0.00 41.38 4.00
117 118 2.666317 AGGGTTGAAACTTTCAGTGGG 58.334 47.619 4.43 0.00 41.38 4.61
118 119 1.686587 GGGTTGAAACTTTCAGTGGGG 59.313 52.381 4.43 0.00 41.38 4.96
119 120 2.384828 GGTTGAAACTTTCAGTGGGGT 58.615 47.619 4.43 0.00 41.38 4.95
120 121 3.558033 GGTTGAAACTTTCAGTGGGGTA 58.442 45.455 4.43 0.00 41.38 3.69
121 122 3.568430 GGTTGAAACTTTCAGTGGGGTAG 59.432 47.826 4.43 0.00 41.38 3.18
122 123 4.204799 GTTGAAACTTTCAGTGGGGTAGT 58.795 43.478 4.43 0.00 41.38 2.73
123 124 5.370679 GTTGAAACTTTCAGTGGGGTAGTA 58.629 41.667 4.43 0.00 41.38 1.82
124 125 5.836024 TGAAACTTTCAGTGGGGTAGTAT 57.164 39.130 0.00 0.00 34.08 2.12
125 126 5.556915 TGAAACTTTCAGTGGGGTAGTATG 58.443 41.667 0.00 0.00 34.08 2.39
126 127 5.308497 TGAAACTTTCAGTGGGGTAGTATGA 59.692 40.000 0.00 0.00 34.08 2.15
127 128 5.836024 AACTTTCAGTGGGGTAGTATGAA 57.164 39.130 0.00 0.00 0.00 2.57
128 129 5.836024 ACTTTCAGTGGGGTAGTATGAAA 57.164 39.130 0.00 0.00 37.49 2.69
130 131 3.906720 TCAGTGGGGTAGTATGAAAGC 57.093 47.619 0.00 0.00 0.00 3.51
131 132 3.450904 TCAGTGGGGTAGTATGAAAGCT 58.549 45.455 0.00 0.00 0.00 3.74
132 133 3.844211 TCAGTGGGGTAGTATGAAAGCTT 59.156 43.478 0.00 0.00 0.00 3.74
133 134 4.081087 TCAGTGGGGTAGTATGAAAGCTTC 60.081 45.833 0.00 0.00 0.00 3.86
134 135 3.200165 AGTGGGGTAGTATGAAAGCTTCC 59.800 47.826 0.00 0.00 0.00 3.46
135 136 3.054655 GTGGGGTAGTATGAAAGCTTCCA 60.055 47.826 0.00 0.00 0.00 3.53
136 137 3.589735 TGGGGTAGTATGAAAGCTTCCAA 59.410 43.478 0.00 0.00 0.00 3.53
137 138 3.945921 GGGGTAGTATGAAAGCTTCCAAC 59.054 47.826 0.00 0.00 0.00 3.77
138 139 4.566907 GGGGTAGTATGAAAGCTTCCAACA 60.567 45.833 0.00 0.00 0.00 3.33
139 140 5.193679 GGGTAGTATGAAAGCTTCCAACAT 58.806 41.667 0.00 6.53 0.00 2.71
140 141 6.354130 GGGTAGTATGAAAGCTTCCAACATA 58.646 40.000 0.00 5.58 0.00 2.29
141 142 6.483640 GGGTAGTATGAAAGCTTCCAACATAG 59.516 42.308 0.00 0.00 0.00 2.23
142 143 6.483640 GGTAGTATGAAAGCTTCCAACATAGG 59.516 42.308 0.00 0.00 0.00 2.57
143 144 6.313519 AGTATGAAAGCTTCCAACATAGGA 57.686 37.500 0.00 0.00 35.41 2.94
144 145 6.352516 AGTATGAAAGCTTCCAACATAGGAG 58.647 40.000 0.00 0.00 39.25 3.69
145 146 4.640771 TGAAAGCTTCCAACATAGGAGT 57.359 40.909 0.00 0.00 39.25 3.85
146 147 4.326826 TGAAAGCTTCCAACATAGGAGTG 58.673 43.478 0.00 0.00 39.25 3.51
147 148 2.409948 AGCTTCCAACATAGGAGTGC 57.590 50.000 0.00 0.00 39.25 4.40
148 149 1.630369 AGCTTCCAACATAGGAGTGCA 59.370 47.619 10.86 0.00 39.68 4.57
149 150 1.740025 GCTTCCAACATAGGAGTGCAC 59.260 52.381 9.40 9.40 39.25 4.57
150 151 2.875672 GCTTCCAACATAGGAGTGCACA 60.876 50.000 21.04 0.00 39.25 4.57
151 152 2.768253 TCCAACATAGGAGTGCACAG 57.232 50.000 21.04 3.85 32.77 3.66
152 153 1.977854 TCCAACATAGGAGTGCACAGT 59.022 47.619 21.04 5.18 32.77 3.55
153 154 2.079158 CCAACATAGGAGTGCACAGTG 58.921 52.381 21.04 11.86 0.00 3.66
154 155 2.079158 CAACATAGGAGTGCACAGTGG 58.921 52.381 21.04 5.68 0.00 4.00
155 156 0.615331 ACATAGGAGTGCACAGTGGG 59.385 55.000 21.04 6.26 0.00 4.61
156 157 0.107508 CATAGGAGTGCACAGTGGGG 60.108 60.000 21.04 0.04 0.00 4.96
157 158 0.547712 ATAGGAGTGCACAGTGGGGT 60.548 55.000 21.04 0.00 0.00 4.95
158 159 0.115547 TAGGAGTGCACAGTGGGGTA 59.884 55.000 21.04 0.00 0.00 3.69
159 160 1.194781 AGGAGTGCACAGTGGGGTAG 61.195 60.000 21.04 0.00 0.00 3.18
160 161 1.481056 GGAGTGCACAGTGGGGTAGT 61.481 60.000 21.04 0.00 0.00 2.73
161 162 1.263356 GAGTGCACAGTGGGGTAGTA 58.737 55.000 21.04 0.00 0.00 1.82
162 163 1.831736 GAGTGCACAGTGGGGTAGTAT 59.168 52.381 21.04 0.00 0.00 2.12
163 164 3.028850 GAGTGCACAGTGGGGTAGTATA 58.971 50.000 21.04 0.00 0.00 1.47
164 165 3.446968 AGTGCACAGTGGGGTAGTATAA 58.553 45.455 21.04 0.00 0.00 0.98
165 166 4.037927 AGTGCACAGTGGGGTAGTATAAT 58.962 43.478 21.04 0.00 0.00 1.28
166 167 4.473559 AGTGCACAGTGGGGTAGTATAATT 59.526 41.667 21.04 0.00 0.00 1.40
167 168 4.814771 GTGCACAGTGGGGTAGTATAATTC 59.185 45.833 13.17 0.00 0.00 2.17
168 169 4.471747 TGCACAGTGGGGTAGTATAATTCA 59.528 41.667 1.84 0.00 0.00 2.57
169 170 4.814771 GCACAGTGGGGTAGTATAATTCAC 59.185 45.833 1.84 0.00 0.00 3.18
170 171 5.365619 CACAGTGGGGTAGTATAATTCACC 58.634 45.833 0.00 0.00 0.00 4.02
176 177 5.641789 GGGTAGTATAATTCACCCCACTT 57.358 43.478 0.35 0.00 44.20 3.16
177 178 6.009908 GGGTAGTATAATTCACCCCACTTT 57.990 41.667 0.35 0.00 44.20 2.66
178 179 7.140522 GGGTAGTATAATTCACCCCACTTTA 57.859 40.000 0.35 0.00 44.20 1.85
179 180 6.994496 GGGTAGTATAATTCACCCCACTTTAC 59.006 42.308 0.35 0.00 44.20 2.01
180 181 7.365831 GGGTAGTATAATTCACCCCACTTTACA 60.366 40.741 0.35 0.00 44.20 2.41
181 182 7.713942 GGTAGTATAATTCACCCCACTTTACAG 59.286 40.741 0.00 0.00 0.00 2.74
182 183 6.659824 AGTATAATTCACCCCACTTTACAGG 58.340 40.000 0.00 0.00 0.00 4.00
192 193 4.235079 CCACTTTACAGGGATTGGATGA 57.765 45.455 0.00 0.00 0.00 2.92
193 194 4.796606 CCACTTTACAGGGATTGGATGAT 58.203 43.478 0.00 0.00 0.00 2.45
194 195 5.203528 CCACTTTACAGGGATTGGATGATT 58.796 41.667 0.00 0.00 0.00 2.57
195 196 5.658190 CCACTTTACAGGGATTGGATGATTT 59.342 40.000 0.00 0.00 0.00 2.17
196 197 6.406177 CCACTTTACAGGGATTGGATGATTTG 60.406 42.308 0.00 0.00 0.00 2.32
197 198 6.153340 CACTTTACAGGGATTGGATGATTTGT 59.847 38.462 0.00 0.00 0.00 2.83
198 199 6.378280 ACTTTACAGGGATTGGATGATTTGTC 59.622 38.462 0.00 0.00 0.00 3.18
199 200 3.635591 ACAGGGATTGGATGATTTGTCC 58.364 45.455 0.00 0.00 36.26 4.02
200 201 2.961062 CAGGGATTGGATGATTTGTCCC 59.039 50.000 0.00 0.00 44.50 4.46
201 202 2.586838 AGGGATTGGATGATTTGTCCCA 59.413 45.455 10.58 0.00 46.16 4.37
202 203 2.961062 GGGATTGGATGATTTGTCCCAG 59.039 50.000 3.46 0.00 43.78 4.45
203 204 2.961062 GGATTGGATGATTTGTCCCAGG 59.039 50.000 0.00 0.00 34.76 4.45
204 205 2.530460 TTGGATGATTTGTCCCAGGG 57.470 50.000 0.00 0.00 34.76 4.45
205 206 1.381867 TGGATGATTTGTCCCAGGGT 58.618 50.000 5.01 0.00 34.76 4.34
206 207 1.715931 TGGATGATTTGTCCCAGGGTT 59.284 47.619 5.01 0.00 34.76 4.11
207 208 2.102578 GGATGATTTGTCCCAGGGTTG 58.897 52.381 5.01 0.00 0.00 3.77
208 209 2.557452 GGATGATTTGTCCCAGGGTTGT 60.557 50.000 5.01 0.00 0.00 3.32
209 210 2.765689 TGATTTGTCCCAGGGTTGTT 57.234 45.000 5.01 0.00 0.00 2.83
210 211 3.039252 TGATTTGTCCCAGGGTTGTTT 57.961 42.857 5.01 0.00 0.00 2.83
211 212 3.379452 TGATTTGTCCCAGGGTTGTTTT 58.621 40.909 5.01 0.00 0.00 2.43
212 213 4.547671 TGATTTGTCCCAGGGTTGTTTTA 58.452 39.130 5.01 0.00 0.00 1.52
213 214 4.962995 TGATTTGTCCCAGGGTTGTTTTAA 59.037 37.500 5.01 0.00 0.00 1.52
214 215 5.604650 TGATTTGTCCCAGGGTTGTTTTAAT 59.395 36.000 5.01 0.00 0.00 1.40
215 216 4.946478 TTGTCCCAGGGTTGTTTTAATG 57.054 40.909 5.01 0.00 0.00 1.90
216 217 4.186077 TGTCCCAGGGTTGTTTTAATGA 57.814 40.909 5.01 0.00 0.00 2.57
217 218 3.892588 TGTCCCAGGGTTGTTTTAATGAC 59.107 43.478 5.01 0.00 0.00 3.06
218 219 4.149598 GTCCCAGGGTTGTTTTAATGACT 58.850 43.478 5.01 0.00 0.00 3.41
219 220 5.163077 TGTCCCAGGGTTGTTTTAATGACTA 60.163 40.000 5.01 0.00 0.00 2.59
220 221 5.414765 GTCCCAGGGTTGTTTTAATGACTAG 59.585 44.000 5.01 0.00 0.00 2.57
221 222 5.073965 TCCCAGGGTTGTTTTAATGACTAGT 59.926 40.000 5.01 0.00 0.00 2.57
222 223 5.183140 CCCAGGGTTGTTTTAATGACTAGTG 59.817 44.000 0.00 0.00 0.00 2.74
223 224 6.001460 CCAGGGTTGTTTTAATGACTAGTGA 58.999 40.000 0.00 0.00 0.00 3.41
224 225 6.072673 CCAGGGTTGTTTTAATGACTAGTGAC 60.073 42.308 0.00 0.00 0.00 3.67
225 226 6.002082 AGGGTTGTTTTAATGACTAGTGACC 58.998 40.000 0.00 0.00 0.00 4.02
226 227 6.002082 GGGTTGTTTTAATGACTAGTGACCT 58.998 40.000 0.00 0.00 0.00 3.85
227 228 6.148976 GGGTTGTTTTAATGACTAGTGACCTC 59.851 42.308 0.00 0.00 0.00 3.85
228 229 6.128634 GGTTGTTTTAATGACTAGTGACCTCG 60.129 42.308 0.00 0.00 0.00 4.63
229 230 5.475719 TGTTTTAATGACTAGTGACCTCGG 58.524 41.667 0.00 0.00 0.00 4.63
230 231 5.011329 TGTTTTAATGACTAGTGACCTCGGT 59.989 40.000 0.00 0.00 0.00 4.69
231 232 4.978083 TTAATGACTAGTGACCTCGGTC 57.022 45.455 0.00 9.15 44.77 4.79
232 233 1.765230 ATGACTAGTGACCTCGGTCC 58.235 55.000 13.22 5.26 43.97 4.46
233 234 0.323178 TGACTAGTGACCTCGGTCCC 60.323 60.000 13.22 1.95 43.97 4.46
234 235 0.323178 GACTAGTGACCTCGGTCCCA 60.323 60.000 13.22 0.00 43.97 4.37
235 236 0.335361 ACTAGTGACCTCGGTCCCAT 59.665 55.000 13.22 2.45 43.97 4.00
236 237 1.033574 CTAGTGACCTCGGTCCCATC 58.966 60.000 13.22 2.47 43.97 3.51
237 238 0.396695 TAGTGACCTCGGTCCCATCC 60.397 60.000 13.22 0.00 43.97 3.51
238 239 1.987855 GTGACCTCGGTCCCATCCA 60.988 63.158 13.22 0.00 43.97 3.41
239 240 1.987855 TGACCTCGGTCCCATCCAC 60.988 63.158 13.22 0.00 43.97 4.02
240 241 2.687566 ACCTCGGTCCCATCCACC 60.688 66.667 0.00 0.00 0.00 4.61
241 242 2.687200 CCTCGGTCCCATCCACCA 60.687 66.667 0.00 0.00 32.89 4.17
242 243 2.297895 CCTCGGTCCCATCCACCAA 61.298 63.158 0.00 0.00 32.89 3.67
243 244 1.635817 CCTCGGTCCCATCCACCAAT 61.636 60.000 0.00 0.00 32.89 3.16
244 245 0.179045 CTCGGTCCCATCCACCAATC 60.179 60.000 0.00 0.00 32.89 2.67
245 246 0.620410 TCGGTCCCATCCACCAATCT 60.620 55.000 0.00 0.00 32.89 2.40
246 247 0.464373 CGGTCCCATCCACCAATCTG 60.464 60.000 0.00 0.00 32.89 2.90
247 248 0.106519 GGTCCCATCCACCAATCTGG 60.107 60.000 0.00 0.00 45.02 3.86
248 249 0.918983 GTCCCATCCACCAATCTGGA 59.081 55.000 0.00 0.00 44.72 3.86
249 250 1.133976 GTCCCATCCACCAATCTGGAG 60.134 57.143 0.00 0.00 43.82 3.86
254 255 4.941609 CACCAATCTGGAGGACGG 57.058 61.111 0.00 0.00 40.96 4.79
255 256 2.286826 CACCAATCTGGAGGACGGA 58.713 57.895 0.00 0.00 40.96 4.69
264 265 5.832539 ATCTGGAGGACGGATTATCAAAT 57.167 39.130 0.00 0.00 42.62 2.32
265 266 4.960938 TCTGGAGGACGGATTATCAAATG 58.039 43.478 0.00 0.00 0.00 2.32
266 267 4.067896 CTGGAGGACGGATTATCAAATGG 58.932 47.826 0.00 0.00 0.00 3.16
267 268 3.714280 TGGAGGACGGATTATCAAATGGA 59.286 43.478 0.00 0.00 0.00 3.41
268 269 4.202357 TGGAGGACGGATTATCAAATGGAG 60.202 45.833 0.00 0.00 0.00 3.86
269 270 4.040461 GGAGGACGGATTATCAAATGGAGA 59.960 45.833 0.00 0.00 0.00 3.71
270 271 5.454755 GGAGGACGGATTATCAAATGGAGAA 60.455 44.000 0.00 0.00 0.00 2.87
271 272 5.615289 AGGACGGATTATCAAATGGAGAAG 58.385 41.667 0.00 0.00 28.77 2.85
272 273 4.214332 GGACGGATTATCAAATGGAGAAGC 59.786 45.833 0.00 0.00 32.54 3.86
273 274 4.780815 ACGGATTATCAAATGGAGAAGCA 58.219 39.130 0.00 0.00 34.91 3.91
274 275 5.192927 ACGGATTATCAAATGGAGAAGCAA 58.807 37.500 0.00 0.00 34.91 3.91
275 276 5.652014 ACGGATTATCAAATGGAGAAGCAAA 59.348 36.000 0.00 0.00 34.91 3.68
276 277 6.183360 ACGGATTATCAAATGGAGAAGCAAAG 60.183 38.462 0.00 0.00 34.91 2.77
277 278 5.981915 GGATTATCAAATGGAGAAGCAAAGC 59.018 40.000 0.00 0.00 34.91 3.51
278 279 2.995466 TCAAATGGAGAAGCAAAGCG 57.005 45.000 0.00 0.00 0.00 4.68
310 311 1.496060 TCTACCATGCACGGGATCTT 58.504 50.000 12.94 0.00 0.00 2.40
324 325 1.532868 GGATCTTCCGTGCATGCATAC 59.467 52.381 25.64 11.18 0.00 2.39
328 329 1.739466 CTTCCGTGCATGCATACTGTT 59.261 47.619 25.64 0.00 0.00 3.16
330 331 2.158559 TCCGTGCATGCATACTGTTTT 58.841 42.857 25.64 0.00 0.00 2.43
331 332 2.161410 TCCGTGCATGCATACTGTTTTC 59.839 45.455 25.64 6.36 0.00 2.29
332 333 2.162208 CCGTGCATGCATACTGTTTTCT 59.838 45.455 25.64 0.00 0.00 2.52
333 334 3.373748 CCGTGCATGCATACTGTTTTCTA 59.626 43.478 25.64 0.00 0.00 2.10
335 336 4.494690 CGTGCATGCATACTGTTTTCTAGG 60.495 45.833 25.64 0.00 0.00 3.02
336 337 4.396166 GTGCATGCATACTGTTTTCTAGGT 59.604 41.667 25.64 0.00 0.00 3.08
338 339 4.035675 GCATGCATACTGTTTTCTAGGTCC 59.964 45.833 14.21 0.00 0.00 4.46
339 340 4.216411 TGCATACTGTTTTCTAGGTCCC 57.784 45.455 0.00 0.00 0.00 4.46
340 341 3.585289 TGCATACTGTTTTCTAGGTCCCA 59.415 43.478 0.00 0.00 0.00 4.37
341 342 3.939592 GCATACTGTTTTCTAGGTCCCAC 59.060 47.826 0.00 0.00 0.00 4.61
342 343 4.323562 GCATACTGTTTTCTAGGTCCCACT 60.324 45.833 0.00 0.00 0.00 4.00
343 344 5.105064 GCATACTGTTTTCTAGGTCCCACTA 60.105 44.000 0.00 0.00 0.00 2.74
344 345 4.886496 ACTGTTTTCTAGGTCCCACTAC 57.114 45.455 0.00 0.00 0.00 2.73
345 346 4.490706 ACTGTTTTCTAGGTCCCACTACT 58.509 43.478 0.00 0.00 0.00 2.57
346 347 4.906060 ACTGTTTTCTAGGTCCCACTACTT 59.094 41.667 0.00 0.00 0.00 2.24
347 348 6.080009 ACTGTTTTCTAGGTCCCACTACTTA 58.920 40.000 0.00 0.00 0.00 2.24
348 349 6.729569 ACTGTTTTCTAGGTCCCACTACTTAT 59.270 38.462 0.00 0.00 0.00 1.73
349 350 6.942976 TGTTTTCTAGGTCCCACTACTTATG 58.057 40.000 0.00 0.00 0.00 1.90
350 351 6.070424 TGTTTTCTAGGTCCCACTACTTATGG 60.070 42.308 0.00 0.00 36.94 2.74
380 381 4.295201 TGACTTACTACACCATATGGCCT 58.705 43.478 22.18 9.24 39.32 5.19
391 392 6.088819 ACACCATATGGCCTTACCTAGATTA 58.911 40.000 22.18 0.00 40.22 1.75
418 419 5.369404 TCTCTCCTCATATTAACCCATGCAA 59.631 40.000 0.00 0.00 0.00 4.08
432 433 6.909550 ACCCATGCAATTTAAGTTGAGTTA 57.090 33.333 14.30 0.00 0.00 2.24
530 531 9.880064 GTAAAGAGATCTTTTAAACAAGACCAC 57.120 33.333 12.73 0.00 43.07 4.16
602 635 9.678941 TGATGAATCTATACATGTAACGAGTTC 57.321 33.333 10.14 10.94 0.00 3.01
603 636 9.900710 GATGAATCTATACATGTAACGAGTTCT 57.099 33.333 10.14 1.04 0.00 3.01
609 642 4.193826 ACATGTAACGAGTTCTGCAGAT 57.806 40.909 19.04 2.68 0.00 2.90
638 673 8.100164 TCATAGAGTTTCACACCATGTTTCATA 58.900 33.333 0.00 0.00 0.00 2.15
639 674 6.560253 AGAGTTTCACACCATGTTTCATAC 57.440 37.500 0.00 0.00 0.00 2.39
657 693 4.391830 TCATACAGTTTCACCATCTTTCGC 59.608 41.667 0.00 0.00 0.00 4.70
675 711 4.517952 TCGCATGGTTTCATCATGTTTT 57.482 36.364 0.00 0.00 42.72 2.43
783 826 4.561213 CGAAAGTTAAATCGGGATTTTGGC 59.439 41.667 11.51 3.87 40.99 4.52
820 891 8.597662 AATGATTCCAAACTTTGAAATCACAG 57.402 30.769 15.93 0.00 38.69 3.66
826 897 7.390027 TCCAAACTTTGAAATCACAGGAAAAA 58.610 30.769 2.87 0.00 0.00 1.94
834 905 1.631405 TCACAGGAAAAAGCATGGGG 58.369 50.000 0.00 0.00 0.00 4.96
940 1011 9.783256 ACAACTAAAACAGAAGTTCATTACAAC 57.217 29.630 5.50 0.00 36.84 3.32
949 1020 9.391006 ACAGAAGTTCATTACAACTAAAACAGA 57.609 29.630 5.50 0.00 35.45 3.41
954 1025 8.129211 AGTTCATTACAACTAAAACAGAAGTGC 58.871 33.333 0.00 0.00 34.70 4.40
955 1026 7.561021 TCATTACAACTAAAACAGAAGTGCA 57.439 32.000 0.00 0.00 0.00 4.57
956 1027 8.165239 TCATTACAACTAAAACAGAAGTGCAT 57.835 30.769 0.00 0.00 0.00 3.96
957 1028 8.075574 TCATTACAACTAAAACAGAAGTGCATG 58.924 33.333 0.00 0.00 0.00 4.06
958 1029 4.610945 ACAACTAAAACAGAAGTGCATGC 58.389 39.130 11.82 11.82 0.00 4.06
959 1030 4.097741 ACAACTAAAACAGAAGTGCATGCA 59.902 37.500 18.46 18.46 0.00 3.96
960 1031 5.221303 ACAACTAAAACAGAAGTGCATGCAT 60.221 36.000 25.64 8.94 0.00 3.96
961 1032 5.051891 ACTAAAACAGAAGTGCATGCATC 57.948 39.130 25.64 18.32 0.00 3.91
962 1033 3.308438 AAAACAGAAGTGCATGCATCC 57.692 42.857 25.64 12.26 0.00 3.51
963 1034 0.806868 AACAGAAGTGCATGCATCCG 59.193 50.000 25.64 13.13 0.00 4.18
964 1035 0.036105 ACAGAAGTGCATGCATCCGA 60.036 50.000 25.64 0.00 0.00 4.55
965 1036 1.089112 CAGAAGTGCATGCATCCGAA 58.911 50.000 25.64 0.00 0.00 4.30
966 1037 1.674441 CAGAAGTGCATGCATCCGAAT 59.326 47.619 25.64 6.60 0.00 3.34
967 1038 2.874086 CAGAAGTGCATGCATCCGAATA 59.126 45.455 25.64 0.00 0.00 1.75
968 1039 3.501062 CAGAAGTGCATGCATCCGAATAT 59.499 43.478 25.64 4.01 0.00 1.28
969 1040 3.750130 AGAAGTGCATGCATCCGAATATC 59.250 43.478 25.64 12.62 0.00 1.63
970 1041 3.413846 AGTGCATGCATCCGAATATCT 57.586 42.857 25.64 9.82 0.00 1.98
971 1042 4.541973 AGTGCATGCATCCGAATATCTA 57.458 40.909 25.64 0.00 0.00 1.98
972 1043 4.898320 AGTGCATGCATCCGAATATCTAA 58.102 39.130 25.64 0.00 0.00 2.10
973 1044 4.934001 AGTGCATGCATCCGAATATCTAAG 59.066 41.667 25.64 0.00 0.00 2.18
974 1045 4.093998 GTGCATGCATCCGAATATCTAAGG 59.906 45.833 25.64 0.00 0.00 2.69
975 1046 3.624861 GCATGCATCCGAATATCTAAGGG 59.375 47.826 14.21 0.00 0.00 3.95
976 1047 3.334583 TGCATCCGAATATCTAAGGGC 57.665 47.619 0.00 0.00 0.00 5.19
977 1048 2.906389 TGCATCCGAATATCTAAGGGCT 59.094 45.455 0.00 0.00 0.00 5.19
978 1049 3.265791 GCATCCGAATATCTAAGGGCTG 58.734 50.000 0.00 0.00 0.00 4.85
979 1050 3.055819 GCATCCGAATATCTAAGGGCTGA 60.056 47.826 0.00 0.00 0.00 4.26
980 1051 4.499183 CATCCGAATATCTAAGGGCTGAC 58.501 47.826 0.00 0.00 0.00 3.51
981 1052 2.897969 TCCGAATATCTAAGGGCTGACC 59.102 50.000 0.00 0.00 40.67 4.02
994 1065 1.222936 CTGACCCATGCTCACTCCC 59.777 63.158 0.00 0.00 0.00 4.30
1022 1093 0.752658 CATATCACTGCACCCCGAGA 59.247 55.000 0.00 0.00 0.00 4.04
1068 1139 2.742116 GGCCCATCCCGAGCAGTTA 61.742 63.158 0.00 0.00 0.00 2.24
1094 1165 1.587054 CCGCTTCTCTTCTCACGGT 59.413 57.895 0.00 0.00 35.99 4.83
1213 1287 4.321966 TTCCACCACGCCATCGCA 62.322 61.111 0.00 0.00 39.84 5.10
1420 1494 1.194121 TCTACTGCAAGCTCCCTGCA 61.194 55.000 10.95 10.95 45.94 4.41
1542 1616 3.345808 CACGCTGGTGTTCGGGTG 61.346 66.667 0.00 0.00 39.38 4.61
1756 1830 3.308530 CAGCTTGATCGATATGTACGCA 58.691 45.455 0.00 0.00 0.00 5.24
1767 1841 1.877637 ATGTACGCAAACTGCACTCA 58.122 45.000 0.00 0.00 45.36 3.41
2134 2208 3.638627 CTGATACTGTATCCTGGACTGCA 59.361 47.826 21.63 0.00 34.26 4.41
2506 2580 6.581712 AGCTGAAAAAGTTGCCAAGAAAATA 58.418 32.000 0.00 0.00 0.00 1.40
2551 2625 7.120285 AGCATGGGATCTCATGTAATTTTATCG 59.880 37.037 31.27 7.04 44.54 2.92
2597 2671 1.527034 GAATGAAGCAGCACACCTGA 58.473 50.000 0.00 0.00 44.64 3.86
2695 2769 7.377766 TGTTTTTGTAGCTCATGATAAGTCC 57.622 36.000 0.00 0.00 0.00 3.85
2732 2806 8.815565 TGAAAGGATTATTGGTGCACTTAATA 57.184 30.769 17.98 17.58 0.00 0.98
2750 2824 9.322773 CACTTAATATTTTCTCAGAGCAGATGA 57.677 33.333 0.00 0.00 0.00 2.92
2816 2890 2.758736 TGAAGAAGAGCAGAAGAGCC 57.241 50.000 0.00 0.00 34.23 4.70
2817 2891 1.973515 TGAAGAAGAGCAGAAGAGCCA 59.026 47.619 0.00 0.00 34.23 4.75
2866 2940 9.651913 AAACTTGCTATGGTATTTGGTATTTTG 57.348 29.630 0.00 0.00 0.00 2.44
2965 3039 7.862512 ATTTCTTTCAAAGATAGCTCAGAGG 57.137 36.000 0.00 0.00 37.38 3.69
3015 3089 5.993748 TTCCACCATTTTAAGGATGGAAC 57.006 39.130 20.63 0.00 45.59 3.62
3046 3120 3.853307 GCGGTGACTTTTGGTGATTGAAG 60.853 47.826 0.00 0.00 0.00 3.02
3054 3128 6.935167 ACTTTTGGTGATTGAAGAACAGTTT 58.065 32.000 0.00 0.00 0.00 2.66
3107 3181 4.018870 TCCTATTGGAAATGCACCTGTACA 60.019 41.667 0.00 0.00 39.87 2.90
3108 3182 4.889409 CCTATTGGAAATGCACCTGTACAT 59.111 41.667 0.00 0.00 34.57 2.29
3109 3183 4.989279 ATTGGAAATGCACCTGTACATC 57.011 40.909 0.00 0.00 0.00 3.06
3110 3184 3.431673 TGGAAATGCACCTGTACATCA 57.568 42.857 0.00 0.00 0.00 3.07
3111 3185 3.760738 TGGAAATGCACCTGTACATCAA 58.239 40.909 0.00 0.00 0.00 2.57
3112 3186 3.505680 TGGAAATGCACCTGTACATCAAC 59.494 43.478 0.00 0.00 0.00 3.18
3113 3187 3.426159 GGAAATGCACCTGTACATCAACG 60.426 47.826 0.00 0.00 0.00 4.10
3114 3188 2.472695 ATGCACCTGTACATCAACGT 57.527 45.000 0.00 0.00 0.00 3.99
3115 3189 1.790755 TGCACCTGTACATCAACGTC 58.209 50.000 0.00 0.00 0.00 4.34
3179 3260 6.203647 GGTAAAACAAAGTGTGCTCGTAATT 58.796 36.000 0.00 0.00 0.00 1.40
3195 3276 6.129062 GCTCGTAATTCACTAGAAATGGATCG 60.129 42.308 0.00 1.10 37.29 3.69
3197 3278 7.262772 TCGTAATTCACTAGAAATGGATCGTT 58.737 34.615 0.00 0.00 37.29 3.85
3199 3280 7.846107 CGTAATTCACTAGAAATGGATCGTTTG 59.154 37.037 0.00 0.00 37.29 2.93
3208 3289 5.301805 AGAAATGGATCGTTTGGTTCTTTGT 59.698 36.000 0.06 0.00 0.00 2.83
3212 3293 6.730960 TGGATCGTTTGGTTCTTTGTATAC 57.269 37.500 0.00 0.00 0.00 1.47
3226 3307 7.372451 TCTTTGTATACGGAACCATTCTTTG 57.628 36.000 0.00 0.00 0.00 2.77
3238 3319 3.005155 ACCATTCTTTGCTGTTGAAGAGC 59.995 43.478 7.45 7.45 33.77 4.09
3279 3376 7.173218 TCACTAGTCTTTCAAATGCCAAACTAG 59.827 37.037 0.00 0.00 40.33 2.57
3287 3384 0.698238 ATGCCAAACTAGAGCCACCA 59.302 50.000 0.00 0.00 0.00 4.17
3299 3396 0.111061 AGCCACCAGAACATCAGCAA 59.889 50.000 0.00 0.00 0.00 3.91
3302 3399 2.754552 GCCACCAGAACATCAGCAATTA 59.245 45.455 0.00 0.00 0.00 1.40
3310 3407 6.094464 CCAGAACATCAGCAATTAATCACTGA 59.906 38.462 17.82 17.82 42.89 3.41
3315 3412 8.289939 ACATCAGCAATTAATCACTGAATCTT 57.710 30.769 18.87 5.52 42.08 2.40
3330 3427 7.028962 CACTGAATCTTTTGTCTGTTTTGACA 58.971 34.615 0.00 0.00 44.17 3.58
3351 3448 9.470399 TTGACATATTCAGGTGTACTAGTCTTA 57.530 33.333 0.00 0.00 34.94 2.10
3406 3503 2.015736 ATCGTTACTCCAAGCTGCTG 57.984 50.000 1.35 0.00 0.00 4.41
3484 3581 6.801539 TGGATATTTCGTCAGATTTATGCC 57.198 37.500 0.00 0.00 0.00 4.40
3530 3627 8.843262 TCTAATCAAGGCATATGTCATTGAAAG 58.157 33.333 21.92 20.63 33.91 2.62
3532 3629 5.508567 TCAAGGCATATGTCATTGAAAGGA 58.491 37.500 18.32 3.31 0.00 3.36
3535 3632 7.779326 TCAAGGCATATGTCATTGAAAGGAATA 59.221 33.333 18.32 1.77 0.00 1.75
3552 3649 8.926092 AAAGGAATAATACTCTAGGAAATGCC 57.074 34.615 0.00 0.00 0.00 4.40
3586 3683 4.389687 GTGAAATTGATGATTTGCGCCTTT 59.610 37.500 4.18 0.00 38.06 3.11
3618 3715 7.447594 AGAAAAGAAGTTGATGATTTGCCAAT 58.552 30.769 0.00 0.00 0.00 3.16
3673 3770 3.282021 TGCATTTCCTGGAGTGCTATTC 58.718 45.455 26.15 7.72 38.37 1.75
3678 3775 4.640771 TTCCTGGAGTGCTATTCTTTGT 57.359 40.909 0.00 0.00 0.00 2.83
3734 3831 8.529476 TCAAATCTGAGTTACCTACTTACCTTC 58.471 37.037 0.00 0.00 37.17 3.46
3801 3922 4.941873 CCCCCTTGACATTTGTAAGTACTC 59.058 45.833 0.00 0.00 0.00 2.59
3802 3923 4.941873 CCCCTTGACATTTGTAAGTACTCC 59.058 45.833 0.00 0.00 0.00 3.85
3803 3924 4.941873 CCCTTGACATTTGTAAGTACTCCC 59.058 45.833 0.00 0.00 0.00 4.30
3804 3925 5.280521 CCCTTGACATTTGTAAGTACTCCCT 60.281 44.000 0.00 0.00 0.00 4.20
3805 3926 5.875359 CCTTGACATTTGTAAGTACTCCCTC 59.125 44.000 0.00 0.00 0.00 4.30
3806 3927 5.416271 TGACATTTGTAAGTACTCCCTCC 57.584 43.478 0.00 0.00 0.00 4.30
3807 3928 4.841813 TGACATTTGTAAGTACTCCCTCCA 59.158 41.667 0.00 0.00 0.00 3.86
3808 3929 5.487488 TGACATTTGTAAGTACTCCCTCCAT 59.513 40.000 0.00 0.00 0.00 3.41
3809 3930 6.670464 TGACATTTGTAAGTACTCCCTCCATA 59.330 38.462 0.00 0.00 0.00 2.74
3810 3931 7.181305 TGACATTTGTAAGTACTCCCTCCATAA 59.819 37.037 0.00 0.00 0.00 1.90
3811 3932 7.924541 ACATTTGTAAGTACTCCCTCCATAAA 58.075 34.615 0.00 0.00 0.00 1.40
3812 3933 7.827729 ACATTTGTAAGTACTCCCTCCATAAAC 59.172 37.037 0.00 0.00 0.00 2.01
3813 3934 7.563724 TTTGTAAGTACTCCCTCCATAAACT 57.436 36.000 0.00 0.00 0.00 2.66
3814 3935 8.669055 TTTGTAAGTACTCCCTCCATAAACTA 57.331 34.615 0.00 0.00 0.00 2.24
3815 3936 8.669055 TTGTAAGTACTCCCTCCATAAACTAA 57.331 34.615 0.00 0.00 0.00 2.24
3816 3937 8.849543 TGTAAGTACTCCCTCCATAAACTAAT 57.150 34.615 0.00 0.00 0.00 1.73
3817 3938 9.940974 TGTAAGTACTCCCTCCATAAACTAATA 57.059 33.333 0.00 0.00 0.00 0.98
3819 3940 8.849543 AAGTACTCCCTCCATAAACTAATACA 57.150 34.615 0.00 0.00 0.00 2.29
3820 3941 8.849543 AGTACTCCCTCCATAAACTAATACAA 57.150 34.615 0.00 0.00 0.00 2.41
3821 3942 8.925338 AGTACTCCCTCCATAAACTAATACAAG 58.075 37.037 0.00 0.00 0.00 3.16
3822 3943 7.989947 ACTCCCTCCATAAACTAATACAAGA 57.010 36.000 0.00 0.00 0.00 3.02
3823 3944 8.024145 ACTCCCTCCATAAACTAATACAAGAG 57.976 38.462 0.00 0.00 0.00 2.85
3824 3945 6.827727 TCCCTCCATAAACTAATACAAGAGC 58.172 40.000 0.00 0.00 0.00 4.09
3825 3946 5.696724 CCCTCCATAAACTAATACAAGAGCG 59.303 44.000 0.00 0.00 0.00 5.03
3826 3947 6.281405 CCTCCATAAACTAATACAAGAGCGT 58.719 40.000 0.00 0.00 0.00 5.07
3827 3948 6.761714 CCTCCATAAACTAATACAAGAGCGTT 59.238 38.462 0.00 0.00 0.00 4.84
3828 3949 7.280205 CCTCCATAAACTAATACAAGAGCGTTT 59.720 37.037 0.00 0.00 0.00 3.60
3829 3950 9.309516 CTCCATAAACTAATACAAGAGCGTTTA 57.690 33.333 0.00 0.00 33.19 2.01
3830 3951 9.309516 TCCATAAACTAATACAAGAGCGTTTAG 57.690 33.333 0.00 0.00 32.47 1.85
3831 3952 9.309516 CCATAAACTAATACAAGAGCGTTTAGA 57.690 33.333 0.00 0.00 32.47 2.10
3834 3955 8.997621 AAACTAATACAAGAGCGTTTAGATCA 57.002 30.769 0.00 0.00 37.82 2.92
3835 3956 7.988904 ACTAATACAAGAGCGTTTAGATCAC 57.011 36.000 0.00 0.00 37.82 3.06
3836 3957 7.773149 ACTAATACAAGAGCGTTTAGATCACT 58.227 34.615 0.00 0.00 37.82 3.41
3837 3958 8.900781 ACTAATACAAGAGCGTTTAGATCACTA 58.099 33.333 0.00 0.00 37.82 2.74
3838 3959 9.388346 CTAATACAAGAGCGTTTAGATCACTAG 57.612 37.037 0.00 0.00 37.82 2.57
3839 3960 5.646577 ACAAGAGCGTTTAGATCACTAGT 57.353 39.130 0.00 0.00 37.82 2.57
3840 3961 6.754702 ACAAGAGCGTTTAGATCACTAGTA 57.245 37.500 0.00 0.00 37.82 1.82
3841 3962 6.787225 ACAAGAGCGTTTAGATCACTAGTAG 58.213 40.000 0.00 0.00 37.82 2.57
3842 3963 6.374894 ACAAGAGCGTTTAGATCACTAGTAGT 59.625 38.462 0.00 0.00 37.82 2.73
3859 3980 8.680039 ACTAGTAGTGATCTAAACGCTCTTAT 57.320 34.615 0.85 0.00 0.00 1.73
3860 3981 9.775854 ACTAGTAGTGATCTAAACGCTCTTATA 57.224 33.333 0.85 0.00 0.00 0.98
3874 3995 8.557869 AACGCTCTTATATTAGTTTACAGACG 57.442 34.615 0.00 0.00 0.00 4.18
3875 3996 7.137426 ACGCTCTTATATTAGTTTACAGACGG 58.863 38.462 0.00 0.00 0.00 4.79
3876 3997 7.012704 ACGCTCTTATATTAGTTTACAGACGGA 59.987 37.037 0.00 0.00 0.00 4.69
3877 3998 7.534578 CGCTCTTATATTAGTTTACAGACGGAG 59.465 40.741 0.00 0.00 0.00 4.63
3932 4054 4.090761 ACATCGTATTGGATGGAGCATT 57.909 40.909 7.39 0.00 46.38 3.56
3933 4055 3.817084 ACATCGTATTGGATGGAGCATTG 59.183 43.478 7.39 0.00 46.38 2.82
3941 4069 2.509131 TGGATGGAGCATTGACCATGTA 59.491 45.455 16.62 6.38 45.41 2.29
3950 4078 3.057876 GCATTGACCATGTAAAACGACCA 60.058 43.478 0.00 0.00 34.98 4.02
3960 4088 5.856126 TGTAAAACGACCAAGTGATCATC 57.144 39.130 0.00 0.00 0.00 2.92
4064 4192 0.170339 GCAATAGGTTGTTGCCGTCC 59.830 55.000 0.00 0.00 44.65 4.79
4079 4207 2.154462 CCGTCCTTGCATATTCATCCC 58.846 52.381 0.00 0.00 0.00 3.85
4081 4209 2.224621 CGTCCTTGCATATTCATCCCCT 60.225 50.000 0.00 0.00 0.00 4.79
4089 4217 5.132502 TGCATATTCATCCCCTACTGTTTG 58.867 41.667 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.412528 ACAGGTTTAACTCTGGTTTCTCCT 59.587 41.667 14.63 0.00 36.92 3.69
1 2 4.715713 ACAGGTTTAACTCTGGTTTCTCC 58.284 43.478 14.63 0.00 36.92 3.71
2 3 4.448060 CGACAGGTTTAACTCTGGTTTCTC 59.552 45.833 14.63 5.43 36.92 2.87
3 4 4.100498 TCGACAGGTTTAACTCTGGTTTCT 59.900 41.667 14.63 0.00 36.92 2.52
4 5 4.374399 TCGACAGGTTTAACTCTGGTTTC 58.626 43.478 14.63 5.93 36.92 2.78
5 6 4.411256 TCGACAGGTTTAACTCTGGTTT 57.589 40.909 14.63 0.00 36.92 3.27
6 7 4.124970 GTTCGACAGGTTTAACTCTGGTT 58.875 43.478 14.63 0.00 39.26 3.67
7 8 3.387050 AGTTCGACAGGTTTAACTCTGGT 59.613 43.478 14.63 1.42 35.47 4.00
8 9 3.991367 AGTTCGACAGGTTTAACTCTGG 58.009 45.455 14.63 2.77 35.47 3.86
9 10 6.214399 ACTTAGTTCGACAGGTTTAACTCTG 58.786 40.000 10.51 10.51 34.23 3.35
10 11 6.264970 AGACTTAGTTCGACAGGTTTAACTCT 59.735 38.462 0.00 0.00 34.23 3.24
11 12 6.362820 CAGACTTAGTTCGACAGGTTTAACTC 59.637 42.308 0.00 0.00 34.23 3.01
12 13 6.214399 CAGACTTAGTTCGACAGGTTTAACT 58.786 40.000 0.00 0.00 36.26 2.24
13 14 5.107568 GCAGACTTAGTTCGACAGGTTTAAC 60.108 44.000 0.00 0.00 0.00 2.01
14 15 4.986659 GCAGACTTAGTTCGACAGGTTTAA 59.013 41.667 0.00 0.00 0.00 1.52
15 16 4.038282 TGCAGACTTAGTTCGACAGGTTTA 59.962 41.667 0.00 0.00 0.00 2.01
16 17 3.181469 TGCAGACTTAGTTCGACAGGTTT 60.181 43.478 0.00 0.00 0.00 3.27
17 18 2.364324 TGCAGACTTAGTTCGACAGGTT 59.636 45.455 0.00 0.00 0.00 3.50
18 19 1.961394 TGCAGACTTAGTTCGACAGGT 59.039 47.619 0.00 0.00 0.00 4.00
19 20 2.724977 TGCAGACTTAGTTCGACAGG 57.275 50.000 0.00 0.00 0.00 4.00
20 21 3.426859 CACTTGCAGACTTAGTTCGACAG 59.573 47.826 0.00 0.00 0.00 3.51
21 22 3.067601 TCACTTGCAGACTTAGTTCGACA 59.932 43.478 0.00 0.00 0.00 4.35
22 23 3.639538 TCACTTGCAGACTTAGTTCGAC 58.360 45.455 0.00 0.00 0.00 4.20
23 24 4.521130 ATCACTTGCAGACTTAGTTCGA 57.479 40.909 0.00 0.00 0.00 3.71
24 25 5.597813 AAATCACTTGCAGACTTAGTTCG 57.402 39.130 0.00 0.00 0.00 3.95
25 26 8.774586 TCTTAAAATCACTTGCAGACTTAGTTC 58.225 33.333 0.00 0.00 0.00 3.01
26 27 8.560374 GTCTTAAAATCACTTGCAGACTTAGTT 58.440 33.333 0.00 0.00 29.64 2.24
27 28 7.095607 CGTCTTAAAATCACTTGCAGACTTAGT 60.096 37.037 0.00 0.00 29.88 2.24
28 29 7.230222 CGTCTTAAAATCACTTGCAGACTTAG 58.770 38.462 0.00 0.00 29.88 2.18
29 30 6.147164 CCGTCTTAAAATCACTTGCAGACTTA 59.853 38.462 0.00 0.00 29.88 2.24
30 31 5.049405 CCGTCTTAAAATCACTTGCAGACTT 60.049 40.000 0.00 0.00 29.88 3.01
31 32 4.452455 CCGTCTTAAAATCACTTGCAGACT 59.548 41.667 0.00 0.00 29.88 3.24
32 33 4.213482 ACCGTCTTAAAATCACTTGCAGAC 59.787 41.667 0.00 0.00 0.00 3.51
33 34 4.385825 ACCGTCTTAAAATCACTTGCAGA 58.614 39.130 0.00 0.00 0.00 4.26
34 35 4.749245 ACCGTCTTAAAATCACTTGCAG 57.251 40.909 0.00 0.00 0.00 4.41
35 36 5.508200 AAACCGTCTTAAAATCACTTGCA 57.492 34.783 0.00 0.00 0.00 4.08
36 37 5.746721 ACAAAACCGTCTTAAAATCACTTGC 59.253 36.000 0.00 0.00 0.00 4.01
37 38 8.844441 TTACAAAACCGTCTTAAAATCACTTG 57.156 30.769 0.00 0.00 0.00 3.16
44 45 9.303537 CCTCAAAATTACAAAACCGTCTTAAAA 57.696 29.630 0.00 0.00 0.00 1.52
45 46 7.921745 CCCTCAAAATTACAAAACCGTCTTAAA 59.078 33.333 0.00 0.00 0.00 1.52
46 47 7.427214 CCCTCAAAATTACAAAACCGTCTTAA 58.573 34.615 0.00 0.00 0.00 1.85
47 48 6.016108 CCCCTCAAAATTACAAAACCGTCTTA 60.016 38.462 0.00 0.00 0.00 2.10
48 49 5.221362 CCCCTCAAAATTACAAAACCGTCTT 60.221 40.000 0.00 0.00 0.00 3.01
49 50 4.279922 CCCCTCAAAATTACAAAACCGTCT 59.720 41.667 0.00 0.00 0.00 4.18
50 51 4.552355 CCCCTCAAAATTACAAAACCGTC 58.448 43.478 0.00 0.00 0.00 4.79
51 52 3.322541 CCCCCTCAAAATTACAAAACCGT 59.677 43.478 0.00 0.00 0.00 4.83
52 53 3.322541 ACCCCCTCAAAATTACAAAACCG 59.677 43.478 0.00 0.00 0.00 4.44
53 54 4.967084 ACCCCCTCAAAATTACAAAACC 57.033 40.909 0.00 0.00 0.00 3.27
54 55 8.911918 AAATTACCCCCTCAAAATTACAAAAC 57.088 30.769 0.00 0.00 0.00 2.43
56 57 9.603189 TCTAAATTACCCCCTCAAAATTACAAA 57.397 29.630 0.00 0.00 0.00 2.83
57 58 9.027202 GTCTAAATTACCCCCTCAAAATTACAA 57.973 33.333 0.00 0.00 0.00 2.41
58 59 8.395605 AGTCTAAATTACCCCCTCAAAATTACA 58.604 33.333 0.00 0.00 0.00 2.41
59 60 8.683615 CAGTCTAAATTACCCCCTCAAAATTAC 58.316 37.037 0.00 0.00 0.00 1.89
60 61 7.837187 CCAGTCTAAATTACCCCCTCAAAATTA 59.163 37.037 0.00 0.00 0.00 1.40
61 62 6.667848 CCAGTCTAAATTACCCCCTCAAAATT 59.332 38.462 0.00 0.00 0.00 1.82
62 63 6.194967 CCAGTCTAAATTACCCCCTCAAAAT 58.805 40.000 0.00 0.00 0.00 1.82
63 64 5.576128 CCAGTCTAAATTACCCCCTCAAAA 58.424 41.667 0.00 0.00 0.00 2.44
64 65 4.569015 GCCAGTCTAAATTACCCCCTCAAA 60.569 45.833 0.00 0.00 0.00 2.69
65 66 3.053917 GCCAGTCTAAATTACCCCCTCAA 60.054 47.826 0.00 0.00 0.00 3.02
66 67 2.508300 GCCAGTCTAAATTACCCCCTCA 59.492 50.000 0.00 0.00 0.00 3.86
67 68 2.508300 TGCCAGTCTAAATTACCCCCTC 59.492 50.000 0.00 0.00 0.00 4.30
68 69 2.568979 TGCCAGTCTAAATTACCCCCT 58.431 47.619 0.00 0.00 0.00 4.79
69 70 3.487372 GATGCCAGTCTAAATTACCCCC 58.513 50.000 0.00 0.00 0.00 5.40
70 71 3.139077 CGATGCCAGTCTAAATTACCCC 58.861 50.000 0.00 0.00 0.00 4.95
71 72 3.808174 GTCGATGCCAGTCTAAATTACCC 59.192 47.826 0.00 0.00 0.00 3.69
72 73 4.694339 AGTCGATGCCAGTCTAAATTACC 58.306 43.478 0.00 0.00 0.00 2.85
73 74 6.663944 AAAGTCGATGCCAGTCTAAATTAC 57.336 37.500 0.00 0.00 0.00 1.89
74 75 6.984474 CCTAAAGTCGATGCCAGTCTAAATTA 59.016 38.462 0.00 0.00 0.00 1.40
75 76 5.817816 CCTAAAGTCGATGCCAGTCTAAATT 59.182 40.000 0.00 0.00 0.00 1.82
76 77 5.360591 CCTAAAGTCGATGCCAGTCTAAAT 58.639 41.667 0.00 0.00 0.00 1.40
77 78 4.382685 CCCTAAAGTCGATGCCAGTCTAAA 60.383 45.833 0.00 0.00 0.00 1.85
78 79 3.132289 CCCTAAAGTCGATGCCAGTCTAA 59.868 47.826 0.00 0.00 0.00 2.10
79 80 2.693591 CCCTAAAGTCGATGCCAGTCTA 59.306 50.000 0.00 0.00 0.00 2.59
80 81 1.482593 CCCTAAAGTCGATGCCAGTCT 59.517 52.381 0.00 0.00 0.00 3.24
81 82 1.207329 ACCCTAAAGTCGATGCCAGTC 59.793 52.381 0.00 0.00 0.00 3.51
82 83 1.276622 ACCCTAAAGTCGATGCCAGT 58.723 50.000 0.00 0.00 0.00 4.00
83 84 2.009774 CAACCCTAAAGTCGATGCCAG 58.990 52.381 0.00 0.00 0.00 4.85
84 85 1.626321 TCAACCCTAAAGTCGATGCCA 59.374 47.619 0.00 0.00 0.00 4.92
85 86 2.396590 TCAACCCTAAAGTCGATGCC 57.603 50.000 0.00 0.00 0.00 4.40
86 87 3.751698 AGTTTCAACCCTAAAGTCGATGC 59.248 43.478 0.00 0.00 0.00 3.91
87 88 5.941948 AAGTTTCAACCCTAAAGTCGATG 57.058 39.130 0.00 0.00 0.00 3.84
88 89 6.059484 TGAAAGTTTCAACCCTAAAGTCGAT 58.941 36.000 15.92 0.00 36.59 3.59
89 90 5.430007 TGAAAGTTTCAACCCTAAAGTCGA 58.570 37.500 15.92 0.00 36.59 4.20
90 91 5.744666 TGAAAGTTTCAACCCTAAAGTCG 57.255 39.130 15.92 0.00 36.59 4.18
108 109 4.288626 AGCTTTCATACTACCCCACTGAAA 59.711 41.667 0.00 0.00 35.29 2.69
109 110 3.844211 AGCTTTCATACTACCCCACTGAA 59.156 43.478 0.00 0.00 0.00 3.02
110 111 3.450904 AGCTTTCATACTACCCCACTGA 58.549 45.455 0.00 0.00 0.00 3.41
111 112 3.914426 AGCTTTCATACTACCCCACTG 57.086 47.619 0.00 0.00 0.00 3.66
112 113 3.200165 GGAAGCTTTCATACTACCCCACT 59.800 47.826 0.00 0.00 0.00 4.00
113 114 3.054655 TGGAAGCTTTCATACTACCCCAC 60.055 47.826 2.32 0.00 0.00 4.61
114 115 3.186283 TGGAAGCTTTCATACTACCCCA 58.814 45.455 2.32 0.00 0.00 4.96
115 116 3.926058 TGGAAGCTTTCATACTACCCC 57.074 47.619 2.32 0.00 0.00 4.95
116 117 4.585879 TGTTGGAAGCTTTCATACTACCC 58.414 43.478 8.64 0.00 0.00 3.69
117 118 6.483640 CCTATGTTGGAAGCTTTCATACTACC 59.516 42.308 8.64 0.00 0.00 3.18
118 119 7.272978 TCCTATGTTGGAAGCTTTCATACTAC 58.727 38.462 8.64 4.22 32.39 2.73
119 120 7.125811 ACTCCTATGTTGGAAGCTTTCATACTA 59.874 37.037 8.64 0.00 35.43 1.82
120 121 6.069963 ACTCCTATGTTGGAAGCTTTCATACT 60.070 38.462 8.64 0.00 35.43 2.12
121 122 6.037610 CACTCCTATGTTGGAAGCTTTCATAC 59.962 42.308 8.64 10.23 35.43 2.39
122 123 6.115446 CACTCCTATGTTGGAAGCTTTCATA 58.885 40.000 8.64 10.40 35.43 2.15
123 124 4.946157 CACTCCTATGTTGGAAGCTTTCAT 59.054 41.667 8.64 9.84 35.43 2.57
124 125 4.326826 CACTCCTATGTTGGAAGCTTTCA 58.673 43.478 2.32 2.32 35.43 2.69
125 126 3.127721 GCACTCCTATGTTGGAAGCTTTC 59.872 47.826 0.00 0.00 35.58 2.62
126 127 3.084786 GCACTCCTATGTTGGAAGCTTT 58.915 45.455 0.00 0.00 35.58 3.51
127 128 2.040278 TGCACTCCTATGTTGGAAGCTT 59.960 45.455 0.00 0.00 37.79 3.74
128 129 1.630369 TGCACTCCTATGTTGGAAGCT 59.370 47.619 0.00 0.00 37.79 3.74
129 130 1.740025 GTGCACTCCTATGTTGGAAGC 59.260 52.381 10.32 0.00 37.57 3.86
130 131 3.005554 CTGTGCACTCCTATGTTGGAAG 58.994 50.000 19.41 0.00 35.43 3.46
131 132 2.371841 ACTGTGCACTCCTATGTTGGAA 59.628 45.455 19.41 0.00 35.43 3.53
132 133 1.977854 ACTGTGCACTCCTATGTTGGA 59.022 47.619 19.41 0.00 34.52 3.53
133 134 2.079158 CACTGTGCACTCCTATGTTGG 58.921 52.381 19.41 0.00 0.00 3.77
134 135 2.079158 CCACTGTGCACTCCTATGTTG 58.921 52.381 19.41 3.40 0.00 3.33
135 136 1.003580 CCCACTGTGCACTCCTATGTT 59.996 52.381 19.41 0.00 0.00 2.71
136 137 0.615331 CCCACTGTGCACTCCTATGT 59.385 55.000 19.41 4.58 0.00 2.29
137 138 0.107508 CCCCACTGTGCACTCCTATG 60.108 60.000 19.41 8.66 0.00 2.23
138 139 0.547712 ACCCCACTGTGCACTCCTAT 60.548 55.000 19.41 0.00 0.00 2.57
139 140 0.115547 TACCCCACTGTGCACTCCTA 59.884 55.000 19.41 0.00 0.00 2.94
140 141 1.152118 TACCCCACTGTGCACTCCT 60.152 57.895 19.41 0.00 0.00 3.69
141 142 1.296715 CTACCCCACTGTGCACTCC 59.703 63.158 19.41 0.00 0.00 3.85
142 143 1.263356 TACTACCCCACTGTGCACTC 58.737 55.000 19.41 0.00 0.00 3.51
143 144 1.952621 ATACTACCCCACTGTGCACT 58.047 50.000 19.41 0.00 0.00 4.40
144 145 3.899052 TTATACTACCCCACTGTGCAC 57.101 47.619 10.75 10.75 0.00 4.57
145 146 4.471747 TGAATTATACTACCCCACTGTGCA 59.528 41.667 1.29 0.00 0.00 4.57
146 147 4.814771 GTGAATTATACTACCCCACTGTGC 59.185 45.833 1.29 0.00 0.00 4.57
147 148 5.365619 GGTGAATTATACTACCCCACTGTG 58.634 45.833 0.00 0.00 0.00 3.66
148 149 4.411212 GGGTGAATTATACTACCCCACTGT 59.589 45.833 0.00 0.00 45.65 3.55
149 150 4.969484 GGGTGAATTATACTACCCCACTG 58.031 47.826 0.00 0.00 45.65 3.66
155 156 7.567458 TGTAAAGTGGGGTGAATTATACTACC 58.433 38.462 0.00 0.00 0.00 3.18
156 157 7.713942 CCTGTAAAGTGGGGTGAATTATACTAC 59.286 40.741 0.00 0.00 0.00 2.73
157 158 7.147444 CCCTGTAAAGTGGGGTGAATTATACTA 60.147 40.741 0.00 0.00 39.76 1.82
158 159 6.353602 CCCTGTAAAGTGGGGTGAATTATACT 60.354 42.308 0.00 0.00 39.76 2.12
159 160 5.826208 CCCTGTAAAGTGGGGTGAATTATAC 59.174 44.000 0.00 0.00 39.76 1.47
160 161 5.732170 TCCCTGTAAAGTGGGGTGAATTATA 59.268 40.000 0.00 0.00 43.51 0.98
161 162 4.542525 TCCCTGTAAAGTGGGGTGAATTAT 59.457 41.667 0.00 0.00 43.51 1.28
162 163 3.917629 TCCCTGTAAAGTGGGGTGAATTA 59.082 43.478 0.00 0.00 43.51 1.40
163 164 2.719705 TCCCTGTAAAGTGGGGTGAATT 59.280 45.455 0.00 0.00 43.51 2.17
164 165 2.354328 TCCCTGTAAAGTGGGGTGAAT 58.646 47.619 0.00 0.00 43.51 2.57
165 166 1.822425 TCCCTGTAAAGTGGGGTGAA 58.178 50.000 0.00 0.00 43.51 3.18
166 167 2.041081 CAATCCCTGTAAAGTGGGGTGA 59.959 50.000 0.00 0.00 43.51 4.02
167 168 2.446435 CAATCCCTGTAAAGTGGGGTG 58.554 52.381 0.00 0.00 43.51 4.61
168 169 1.357761 CCAATCCCTGTAAAGTGGGGT 59.642 52.381 0.00 0.00 43.51 4.95
169 170 1.638589 TCCAATCCCTGTAAAGTGGGG 59.361 52.381 0.00 0.00 43.51 4.96
170 171 3.053693 TCATCCAATCCCTGTAAAGTGGG 60.054 47.826 0.00 0.00 44.66 4.61
171 172 4.235079 TCATCCAATCCCTGTAAAGTGG 57.765 45.455 0.00 0.00 0.00 4.00
172 173 6.153340 ACAAATCATCCAATCCCTGTAAAGTG 59.847 38.462 0.00 0.00 0.00 3.16
173 174 6.256053 ACAAATCATCCAATCCCTGTAAAGT 58.744 36.000 0.00 0.00 0.00 2.66
174 175 6.183360 GGACAAATCATCCAATCCCTGTAAAG 60.183 42.308 0.00 0.00 36.15 1.85
175 176 5.656416 GGACAAATCATCCAATCCCTGTAAA 59.344 40.000 0.00 0.00 36.15 2.01
176 177 5.200483 GGACAAATCATCCAATCCCTGTAA 58.800 41.667 0.00 0.00 36.15 2.41
177 178 4.386312 GGGACAAATCATCCAATCCCTGTA 60.386 45.833 0.00 0.00 42.27 2.74
178 179 3.628257 GGGACAAATCATCCAATCCCTGT 60.628 47.826 0.00 0.00 42.27 4.00
179 180 2.961062 GGGACAAATCATCCAATCCCTG 59.039 50.000 0.00 0.00 42.27 4.45
180 181 2.586838 TGGGACAAATCATCCAATCCCT 59.413 45.455 8.52 0.00 45.25 4.20
181 182 2.961062 CTGGGACAAATCATCCAATCCC 59.039 50.000 0.00 0.00 45.24 3.85
182 183 2.961062 CCTGGGACAAATCATCCAATCC 59.039 50.000 0.00 0.00 38.70 3.01
183 184 2.961062 CCCTGGGACAAATCATCCAATC 59.039 50.000 7.01 0.00 38.70 2.67
184 185 2.315763 ACCCTGGGACAAATCATCCAAT 59.684 45.455 22.23 0.00 38.70 3.16
185 186 1.715931 ACCCTGGGACAAATCATCCAA 59.284 47.619 22.23 0.00 38.70 3.53
186 187 1.381867 ACCCTGGGACAAATCATCCA 58.618 50.000 22.23 0.00 38.70 3.41
187 188 2.102578 CAACCCTGGGACAAATCATCC 58.897 52.381 22.23 0.00 38.70 3.51
188 189 2.807676 ACAACCCTGGGACAAATCATC 58.192 47.619 22.23 0.00 38.70 2.92
189 190 2.999185 ACAACCCTGGGACAAATCAT 57.001 45.000 22.23 0.00 38.70 2.45
190 191 2.765689 AACAACCCTGGGACAAATCA 57.234 45.000 22.23 0.00 38.70 2.57
191 192 5.538849 TTAAAACAACCCTGGGACAAATC 57.461 39.130 22.23 0.00 38.70 2.17
192 193 5.604650 TCATTAAAACAACCCTGGGACAAAT 59.395 36.000 22.23 6.12 38.70 2.32
193 194 4.962995 TCATTAAAACAACCCTGGGACAAA 59.037 37.500 22.23 3.96 38.70 2.83
194 195 4.342665 GTCATTAAAACAACCCTGGGACAA 59.657 41.667 22.23 2.54 38.70 3.18
195 196 3.892588 GTCATTAAAACAACCCTGGGACA 59.107 43.478 22.23 0.00 0.00 4.02
196 197 4.149598 AGTCATTAAAACAACCCTGGGAC 58.850 43.478 22.23 1.85 0.00 4.46
197 198 4.463050 AGTCATTAAAACAACCCTGGGA 57.537 40.909 22.23 0.00 0.00 4.37
198 199 5.183140 CACTAGTCATTAAAACAACCCTGGG 59.817 44.000 12.28 12.28 0.00 4.45
199 200 6.001460 TCACTAGTCATTAAAACAACCCTGG 58.999 40.000 0.00 0.00 0.00 4.45
200 201 6.072673 GGTCACTAGTCATTAAAACAACCCTG 60.073 42.308 0.00 0.00 0.00 4.45
201 202 6.002082 GGTCACTAGTCATTAAAACAACCCT 58.998 40.000 0.00 0.00 0.00 4.34
202 203 6.002082 AGGTCACTAGTCATTAAAACAACCC 58.998 40.000 0.00 0.00 0.00 4.11
203 204 6.128634 CGAGGTCACTAGTCATTAAAACAACC 60.129 42.308 0.00 0.00 0.00 3.77
204 205 6.128634 CCGAGGTCACTAGTCATTAAAACAAC 60.129 42.308 0.00 0.00 0.00 3.32
205 206 5.929992 CCGAGGTCACTAGTCATTAAAACAA 59.070 40.000 0.00 0.00 0.00 2.83
206 207 5.011329 ACCGAGGTCACTAGTCATTAAAACA 59.989 40.000 0.00 0.00 0.00 2.83
207 208 5.476614 ACCGAGGTCACTAGTCATTAAAAC 58.523 41.667 0.00 0.00 0.00 2.43
208 209 5.337009 GGACCGAGGTCACTAGTCATTAAAA 60.337 44.000 22.17 0.00 46.20 1.52
209 210 4.159135 GGACCGAGGTCACTAGTCATTAAA 59.841 45.833 22.17 0.00 46.20 1.52
210 211 3.698040 GGACCGAGGTCACTAGTCATTAA 59.302 47.826 22.17 0.00 46.20 1.40
211 212 3.285484 GGACCGAGGTCACTAGTCATTA 58.715 50.000 22.17 0.00 46.20 1.90
212 213 2.100989 GGACCGAGGTCACTAGTCATT 58.899 52.381 22.17 0.00 46.20 2.57
213 214 1.685491 GGGACCGAGGTCACTAGTCAT 60.685 57.143 22.17 0.00 44.56 3.06
214 215 0.323178 GGGACCGAGGTCACTAGTCA 60.323 60.000 22.17 0.00 44.56 3.41
215 216 2.491291 GGGACCGAGGTCACTAGTC 58.509 63.158 22.17 5.20 44.56 2.59
216 217 4.759893 GGGACCGAGGTCACTAGT 57.240 61.111 22.17 0.00 44.56 2.57
221 222 1.987855 GTGGATGGGACCGAGGTCA 60.988 63.158 22.17 5.43 46.20 4.02
222 223 2.732619 GGTGGATGGGACCGAGGTC 61.733 68.421 13.61 13.61 43.87 3.85
223 224 2.687566 GGTGGATGGGACCGAGGT 60.688 66.667 0.00 0.00 0.00 3.85
224 225 1.635817 ATTGGTGGATGGGACCGAGG 61.636 60.000 0.00 0.00 36.12 4.63
225 226 0.179045 GATTGGTGGATGGGACCGAG 60.179 60.000 0.00 0.00 36.12 4.63
226 227 0.620410 AGATTGGTGGATGGGACCGA 60.620 55.000 0.00 0.00 36.12 4.69
227 228 0.464373 CAGATTGGTGGATGGGACCG 60.464 60.000 0.00 0.00 36.12 4.79
228 229 0.106519 CCAGATTGGTGGATGGGACC 60.107 60.000 0.00 0.00 40.44 4.46
229 230 0.918983 TCCAGATTGGTGGATGGGAC 59.081 55.000 0.00 0.00 41.99 4.46
230 231 1.216064 CTCCAGATTGGTGGATGGGA 58.784 55.000 0.00 0.00 45.87 4.37
231 232 3.815133 CTCCAGATTGGTGGATGGG 57.185 57.895 0.00 0.00 45.87 4.00
237 238 0.833287 ATCCGTCCTCCAGATTGGTG 59.167 55.000 0.00 0.00 39.03 4.17
238 239 1.584724 AATCCGTCCTCCAGATTGGT 58.415 50.000 0.00 0.00 39.03 3.67
239 240 3.324846 TGATAATCCGTCCTCCAGATTGG 59.675 47.826 0.00 0.00 39.43 3.16
240 241 4.607293 TGATAATCCGTCCTCCAGATTG 57.393 45.455 0.00 0.00 32.64 2.67
241 242 5.630415 TTTGATAATCCGTCCTCCAGATT 57.370 39.130 0.00 0.00 34.68 2.40
242 243 5.513788 CCATTTGATAATCCGTCCTCCAGAT 60.514 44.000 0.00 0.00 0.00 2.90
243 244 4.202357 CCATTTGATAATCCGTCCTCCAGA 60.202 45.833 0.00 0.00 0.00 3.86
244 245 4.067896 CCATTTGATAATCCGTCCTCCAG 58.932 47.826 0.00 0.00 0.00 3.86
245 246 3.714280 TCCATTTGATAATCCGTCCTCCA 59.286 43.478 0.00 0.00 0.00 3.86
246 247 4.040461 TCTCCATTTGATAATCCGTCCTCC 59.960 45.833 0.00 0.00 0.00 4.30
247 248 5.215252 TCTCCATTTGATAATCCGTCCTC 57.785 43.478 0.00 0.00 0.00 3.71
248 249 5.615289 CTTCTCCATTTGATAATCCGTCCT 58.385 41.667 0.00 0.00 0.00 3.85
249 250 4.214332 GCTTCTCCATTTGATAATCCGTCC 59.786 45.833 0.00 0.00 0.00 4.79
250 251 4.816385 TGCTTCTCCATTTGATAATCCGTC 59.184 41.667 0.00 0.00 0.00 4.79
251 252 4.780815 TGCTTCTCCATTTGATAATCCGT 58.219 39.130 0.00 0.00 0.00 4.69
252 253 5.756195 TTGCTTCTCCATTTGATAATCCG 57.244 39.130 0.00 0.00 0.00 4.18
253 254 5.981915 GCTTTGCTTCTCCATTTGATAATCC 59.018 40.000 0.00 0.00 0.00 3.01
254 255 5.684626 CGCTTTGCTTCTCCATTTGATAATC 59.315 40.000 0.00 0.00 0.00 1.75
255 256 5.450965 CCGCTTTGCTTCTCCATTTGATAAT 60.451 40.000 0.00 0.00 0.00 1.28
256 257 4.142403 CCGCTTTGCTTCTCCATTTGATAA 60.142 41.667 0.00 0.00 0.00 1.75
257 258 3.378112 CCGCTTTGCTTCTCCATTTGATA 59.622 43.478 0.00 0.00 0.00 2.15
258 259 2.165030 CCGCTTTGCTTCTCCATTTGAT 59.835 45.455 0.00 0.00 0.00 2.57
259 260 1.541147 CCGCTTTGCTTCTCCATTTGA 59.459 47.619 0.00 0.00 0.00 2.69
260 261 1.541147 TCCGCTTTGCTTCTCCATTTG 59.459 47.619 0.00 0.00 0.00 2.32
261 262 1.815003 CTCCGCTTTGCTTCTCCATTT 59.185 47.619 0.00 0.00 0.00 2.32
262 263 1.003580 TCTCCGCTTTGCTTCTCCATT 59.996 47.619 0.00 0.00 0.00 3.16
263 264 0.615331 TCTCCGCTTTGCTTCTCCAT 59.385 50.000 0.00 0.00 0.00 3.41
264 265 0.396435 TTCTCCGCTTTGCTTCTCCA 59.604 50.000 0.00 0.00 0.00 3.86
265 266 1.399791 CATTCTCCGCTTTGCTTCTCC 59.600 52.381 0.00 0.00 0.00 3.71
266 267 1.399791 CCATTCTCCGCTTTGCTTCTC 59.600 52.381 0.00 0.00 0.00 2.87
267 268 1.271597 ACCATTCTCCGCTTTGCTTCT 60.272 47.619 0.00 0.00 0.00 2.85
268 269 1.168714 ACCATTCTCCGCTTTGCTTC 58.831 50.000 0.00 0.00 0.00 3.86
269 270 1.620822 AACCATTCTCCGCTTTGCTT 58.379 45.000 0.00 0.00 0.00 3.91
270 271 1.620822 AAACCATTCTCCGCTTTGCT 58.379 45.000 0.00 0.00 0.00 3.91
271 272 2.438868 AAAACCATTCTCCGCTTTGC 57.561 45.000 0.00 0.00 0.00 3.68
272 273 4.243007 AGAAAAACCATTCTCCGCTTTG 57.757 40.909 0.00 0.00 34.60 2.77
273 274 4.217767 GGTAGAAAAACCATTCTCCGCTTT 59.782 41.667 0.00 0.00 40.13 3.51
274 275 3.756963 GGTAGAAAAACCATTCTCCGCTT 59.243 43.478 0.00 0.00 40.13 4.68
275 276 3.244770 TGGTAGAAAAACCATTCTCCGCT 60.245 43.478 0.00 0.00 44.68 5.52
276 277 3.078837 TGGTAGAAAAACCATTCTCCGC 58.921 45.455 0.00 0.00 44.68 5.54
310 311 1.819928 AAACAGTATGCATGCACGGA 58.180 45.000 25.37 8.76 42.53 4.69
324 325 5.485209 AAGTAGTGGGACCTAGAAAACAG 57.515 43.478 0.00 0.00 0.00 3.16
338 339 7.125792 AGTCATAAGTTCCCATAAGTAGTGG 57.874 40.000 0.00 0.00 36.47 4.00
339 340 9.530633 GTAAGTCATAAGTTCCCATAAGTAGTG 57.469 37.037 0.00 0.00 0.00 2.74
340 341 9.490083 AGTAAGTCATAAGTTCCCATAAGTAGT 57.510 33.333 0.00 0.00 0.00 2.73
343 344 9.263446 TGTAGTAAGTCATAAGTTCCCATAAGT 57.737 33.333 0.00 0.00 0.00 2.24
344 345 9.530633 GTGTAGTAAGTCATAAGTTCCCATAAG 57.469 37.037 0.00 0.00 0.00 1.73
345 346 8.480501 GGTGTAGTAAGTCATAAGTTCCCATAA 58.519 37.037 0.00 0.00 0.00 1.90
346 347 7.620491 TGGTGTAGTAAGTCATAAGTTCCCATA 59.380 37.037 0.00 0.00 0.00 2.74
347 348 6.442564 TGGTGTAGTAAGTCATAAGTTCCCAT 59.557 38.462 0.00 0.00 0.00 4.00
348 349 5.781306 TGGTGTAGTAAGTCATAAGTTCCCA 59.219 40.000 0.00 0.00 0.00 4.37
349 350 6.290294 TGGTGTAGTAAGTCATAAGTTCCC 57.710 41.667 0.00 0.00 0.00 3.97
350 351 9.477484 CATATGGTGTAGTAAGTCATAAGTTCC 57.523 37.037 0.00 0.00 0.00 3.62
351 352 9.477484 CCATATGGTGTAGTAAGTCATAAGTTC 57.523 37.037 14.09 0.00 0.00 3.01
367 368 3.936461 TCTAGGTAAGGCCATATGGTGT 58.064 45.455 22.79 10.82 40.61 4.16
391 392 6.944862 GCATGGGTTAATATGAGGAGAGAAAT 59.055 38.462 0.00 0.00 0.00 2.17
583 585 6.317893 TCTGCAGAACTCGTTACATGTATAGA 59.682 38.462 15.67 8.32 0.00 1.98
593 626 8.166422 TCTATGATAATCTGCAGAACTCGTTA 57.834 34.615 22.50 14.46 0.00 3.18
597 630 8.885494 AAACTCTATGATAATCTGCAGAACTC 57.115 34.615 22.50 17.05 0.00 3.01
602 635 7.042187 GGTGTGAAACTCTATGATAATCTGCAG 60.042 40.741 7.63 7.63 38.04 4.41
603 636 6.763135 GGTGTGAAACTCTATGATAATCTGCA 59.237 38.462 0.00 0.00 38.04 4.41
638 673 2.571212 TGCGAAAGATGGTGAAACTGT 58.429 42.857 0.00 0.00 36.74 3.55
639 674 3.495193 CATGCGAAAGATGGTGAAACTG 58.505 45.455 0.00 0.00 36.74 3.16
730 771 1.481871 TATTCCTGGTGACGAGGACC 58.518 55.000 16.25 0.00 37.37 4.46
820 891 0.321346 CACACCCCCATGCTTTTTCC 59.679 55.000 0.00 0.00 0.00 3.13
826 897 3.983420 CCACCACACCCCCATGCT 61.983 66.667 0.00 0.00 0.00 3.79
834 905 0.958822 GACATGAAACCCACCACACC 59.041 55.000 0.00 0.00 0.00 4.16
914 985 9.783256 GTTGTAATGAACTTCTGTTTTAGTTGT 57.217 29.630 0.00 0.00 36.39 3.32
923 994 9.391006 TCTGTTTTAGTTGTAATGAACTTCTGT 57.609 29.630 0.00 0.00 37.38 3.41
928 999 8.129211 GCACTTCTGTTTTAGTTGTAATGAACT 58.871 33.333 0.00 0.00 39.54 3.01
929 1000 7.913297 TGCACTTCTGTTTTAGTTGTAATGAAC 59.087 33.333 0.00 0.00 0.00 3.18
930 1001 7.990917 TGCACTTCTGTTTTAGTTGTAATGAA 58.009 30.769 0.00 0.00 0.00 2.57
931 1002 7.561021 TGCACTTCTGTTTTAGTTGTAATGA 57.439 32.000 0.00 0.00 0.00 2.57
932 1003 7.148918 GCATGCACTTCTGTTTTAGTTGTAATG 60.149 37.037 14.21 0.00 0.00 1.90
933 1004 6.863126 GCATGCACTTCTGTTTTAGTTGTAAT 59.137 34.615 14.21 0.00 0.00 1.89
934 1005 6.183360 TGCATGCACTTCTGTTTTAGTTGTAA 60.183 34.615 18.46 0.00 0.00 2.41
935 1006 5.298026 TGCATGCACTTCTGTTTTAGTTGTA 59.702 36.000 18.46 0.00 0.00 2.41
936 1007 4.097741 TGCATGCACTTCTGTTTTAGTTGT 59.902 37.500 18.46 0.00 0.00 3.32
937 1008 4.609947 TGCATGCACTTCTGTTTTAGTTG 58.390 39.130 18.46 0.00 0.00 3.16
938 1009 4.916983 TGCATGCACTTCTGTTTTAGTT 57.083 36.364 18.46 0.00 0.00 2.24
939 1010 4.082571 GGATGCATGCACTTCTGTTTTAGT 60.083 41.667 25.37 1.05 0.00 2.24
940 1011 4.418392 GGATGCATGCACTTCTGTTTTAG 58.582 43.478 25.37 0.00 0.00 1.85
941 1012 3.119884 CGGATGCATGCACTTCTGTTTTA 60.120 43.478 25.37 0.00 0.00 1.52
942 1013 2.352030 CGGATGCATGCACTTCTGTTTT 60.352 45.455 25.37 2.84 0.00 2.43
943 1014 1.200716 CGGATGCATGCACTTCTGTTT 59.799 47.619 25.37 3.73 0.00 2.83
944 1015 0.806868 CGGATGCATGCACTTCTGTT 59.193 50.000 25.37 4.65 0.00 3.16
945 1016 0.036105 TCGGATGCATGCACTTCTGT 60.036 50.000 25.37 5.55 0.00 3.41
946 1017 1.089112 TTCGGATGCATGCACTTCTG 58.911 50.000 25.37 22.00 0.00 3.02
947 1018 2.048444 ATTCGGATGCATGCACTTCT 57.952 45.000 25.37 6.94 0.00 2.85
948 1019 3.750130 AGATATTCGGATGCATGCACTTC 59.250 43.478 25.37 17.76 0.00 3.01
949 1020 3.748083 AGATATTCGGATGCATGCACTT 58.252 40.909 25.37 8.32 0.00 3.16
950 1021 3.413846 AGATATTCGGATGCATGCACT 57.586 42.857 25.37 12.53 0.00 4.40
951 1022 4.093998 CCTTAGATATTCGGATGCATGCAC 59.906 45.833 25.37 16.53 0.00 4.57
952 1023 4.256110 CCTTAGATATTCGGATGCATGCA 58.744 43.478 25.04 25.04 0.00 3.96
953 1024 3.624861 CCCTTAGATATTCGGATGCATGC 59.375 47.826 11.82 11.82 0.00 4.06
954 1025 3.624861 GCCCTTAGATATTCGGATGCATG 59.375 47.826 2.46 0.00 0.00 4.06
955 1026 3.521126 AGCCCTTAGATATTCGGATGCAT 59.479 43.478 0.00 0.00 0.00 3.96
956 1027 2.906389 AGCCCTTAGATATTCGGATGCA 59.094 45.455 0.00 0.00 0.00 3.96
957 1028 3.055819 TCAGCCCTTAGATATTCGGATGC 60.056 47.826 0.00 0.00 30.08 3.91
958 1029 4.499183 GTCAGCCCTTAGATATTCGGATG 58.501 47.826 0.00 0.00 0.00 3.51
959 1030 3.515901 GGTCAGCCCTTAGATATTCGGAT 59.484 47.826 0.00 0.00 0.00 4.18
960 1031 2.897969 GGTCAGCCCTTAGATATTCGGA 59.102 50.000 0.00 0.00 0.00 4.55
961 1032 3.320673 GGTCAGCCCTTAGATATTCGG 57.679 52.381 0.00 0.00 0.00 4.30
974 1045 1.451028 GAGTGAGCATGGGTCAGCC 60.451 63.158 0.00 0.00 40.79 4.85
975 1046 1.451028 GGAGTGAGCATGGGTCAGC 60.451 63.158 0.00 0.00 40.79 4.26
976 1047 1.222936 GGGAGTGAGCATGGGTCAG 59.777 63.158 0.00 0.00 40.79 3.51
977 1048 2.659063 CGGGAGTGAGCATGGGTCA 61.659 63.158 0.00 0.00 37.74 4.02
978 1049 2.187946 CGGGAGTGAGCATGGGTC 59.812 66.667 0.00 0.00 0.00 4.46
979 1050 4.101448 GCGGGAGTGAGCATGGGT 62.101 66.667 0.00 0.00 0.00 4.51
994 1065 2.961721 AGTGATATGTGCGGCGCG 60.962 61.111 28.09 0.00 0.00 6.86
1005 1076 1.327690 GGTCTCGGGGTGCAGTGATA 61.328 60.000 0.00 0.00 0.00 2.15
1051 1122 1.227674 CTAACTGCTCGGGATGGGC 60.228 63.158 0.00 0.00 0.00 5.36
1542 1616 4.475135 GCCTCCCCTTCTCCGCAC 62.475 72.222 0.00 0.00 0.00 5.34
1665 1739 0.548510 GACTTCCATTCCCCTCCTGG 59.451 60.000 0.00 0.00 0.00 4.45
1756 1830 4.134563 AGTAATCCGTTTGAGTGCAGTTT 58.865 39.130 0.00 0.00 0.00 2.66
1767 1841 2.301009 ACCTTGACCGAGTAATCCGTTT 59.699 45.455 0.00 0.00 0.00 3.60
1891 1965 3.311871 GTCTAACTCCAGAATGCAGCATG 59.688 47.826 9.18 0.00 40.87 4.06
2134 2208 5.202765 TGTAAAGCATGTCCCATGATCATT 58.797 37.500 5.16 0.00 0.00 2.57
2312 2386 0.036010 AGAGAGGGAACAATGCCGTG 60.036 55.000 0.00 0.00 42.97 4.94
2506 2580 3.009473 TGCTCCTAGGTTCAAGCTCAAAT 59.991 43.478 18.23 0.00 35.76 2.32
2563 2637 3.634397 TCATTCCATCTCCCAGAACAC 57.366 47.619 0.00 0.00 0.00 3.32
2569 2643 1.409241 GCTGCTTCATTCCATCTCCCA 60.409 52.381 0.00 0.00 0.00 4.37
2597 2671 3.323403 CCCTTCTTTCTCATAGATCGCCT 59.677 47.826 0.00 0.00 0.00 5.52
2732 2806 3.931468 CGTGTCATCTGCTCTGAGAAAAT 59.069 43.478 9.28 0.00 0.00 1.82
2750 2824 2.105134 TGGGAACATAACCTTGACGTGT 59.895 45.455 0.00 0.00 33.40 4.49
2816 2890 4.064388 TCACTGTGACCACATAACACATG 58.936 43.478 6.36 0.00 42.30 3.21
2817 2891 4.350368 TCACTGTGACCACATAACACAT 57.650 40.909 6.36 0.00 42.30 3.21
2866 2940 4.003648 CTGTTGTTCCAGGAGGTGTATTC 58.996 47.826 0.00 0.00 35.89 1.75
2960 3034 2.868583 CACGCATAACAATCTCCCTCTG 59.131 50.000 0.00 0.00 0.00 3.35
2965 3039 3.259207 GCATCACGCATAACAATCTCC 57.741 47.619 0.00 0.00 41.79 3.71
3015 3089 1.308998 AAAGTCACCGCAAGAACAGG 58.691 50.000 0.00 0.00 43.02 4.00
3046 3120 2.875933 TGACGTTGATCCCAAACTGTTC 59.124 45.455 0.00 0.00 33.49 3.18
3054 3128 2.849294 TGAACATGACGTTGATCCCA 57.151 45.000 0.00 0.00 38.19 4.37
3107 3181 5.359194 AATAACCTCATCCTGACGTTGAT 57.641 39.130 0.00 0.00 30.44 2.57
3108 3182 4.819105 AATAACCTCATCCTGACGTTGA 57.181 40.909 0.00 0.00 30.44 3.18
3109 3183 5.063944 CAGAAATAACCTCATCCTGACGTTG 59.936 44.000 0.00 0.00 30.44 4.10
3110 3184 5.046591 TCAGAAATAACCTCATCCTGACGTT 60.047 40.000 0.00 0.00 32.11 3.99
3111 3185 4.466370 TCAGAAATAACCTCATCCTGACGT 59.534 41.667 0.00 0.00 0.00 4.34
3112 3186 4.806247 GTCAGAAATAACCTCATCCTGACG 59.194 45.833 0.00 0.00 39.39 4.35
3113 3187 5.983540 AGTCAGAAATAACCTCATCCTGAC 58.016 41.667 0.00 0.00 45.39 3.51
3114 3188 6.627087 AAGTCAGAAATAACCTCATCCTGA 57.373 37.500 0.00 0.00 0.00 3.86
3115 3189 7.693969 AAAAGTCAGAAATAACCTCATCCTG 57.306 36.000 0.00 0.00 0.00 3.86
3142 3223 2.175069 TGTTTTACCCCTGGCACTTACA 59.825 45.455 0.00 0.00 0.00 2.41
3143 3224 2.866351 TGTTTTACCCCTGGCACTTAC 58.134 47.619 0.00 0.00 0.00 2.34
3144 3225 3.596940 TTGTTTTACCCCTGGCACTTA 57.403 42.857 0.00 0.00 0.00 2.24
3150 3231 2.223947 GCACACTTTGTTTTACCCCTGG 60.224 50.000 0.00 0.00 0.00 4.45
3179 3260 5.160607 ACCAAACGATCCATTTCTAGTGA 57.839 39.130 0.00 0.00 0.00 3.41
3208 3289 4.839121 ACAGCAAAGAATGGTTCCGTATA 58.161 39.130 0.00 0.00 37.77 1.47
3212 3293 2.293122 TCAACAGCAAAGAATGGTTCCG 59.707 45.455 0.00 0.00 37.77 4.30
3226 3307 2.030540 TCTTGCATTGCTCTTCAACAGC 60.031 45.455 10.49 0.00 37.53 4.40
3238 3319 6.580963 GACTAGTGATGTAGTCTTGCATTG 57.419 41.667 0.00 0.00 43.87 2.82
3279 3376 0.321919 TGCTGATGTTCTGGTGGCTC 60.322 55.000 0.00 0.00 0.00 4.70
3287 3384 7.692460 TTCAGTGATTAATTGCTGATGTTCT 57.308 32.000 17.75 0.00 37.74 3.01
3302 3399 8.469200 TCAAAACAGACAAAAGATTCAGTGATT 58.531 29.630 0.00 0.00 0.00 2.57
3381 3478 5.243954 AGCAGCTTGGAGTAACGATATCATA 59.756 40.000 3.12 0.00 0.00 2.15
3389 3486 1.790387 GCAGCAGCTTGGAGTAACG 59.210 57.895 0.00 0.00 37.91 3.18
3395 3492 9.528533 TATCAGATGATAAAGCAGCAGCTTGGA 62.529 40.741 17.77 9.03 46.34 3.53
3396 3493 7.460925 TATCAGATGATAAAGCAGCAGCTTGG 61.461 42.308 17.77 0.80 46.34 3.61
3397 3494 5.469084 TATCAGATGATAAAGCAGCAGCTTG 59.531 40.000 17.77 2.93 46.34 4.01
3454 3551 5.351948 TCTGACGAAATATCCAACCATGA 57.648 39.130 0.00 0.00 0.00 3.07
3504 3601 8.750515 TTTCAATGACATATGCCTTGATTAGA 57.249 30.769 1.58 0.00 0.00 2.10
3530 3627 7.454225 AGTGGCATTTCCTAGAGTATTATTCC 58.546 38.462 0.00 0.00 35.26 3.01
3532 3629 8.034313 TGAGTGGCATTTCCTAGAGTATTATT 57.966 34.615 0.00 0.00 35.26 1.40
3535 3632 5.663106 TCTGAGTGGCATTTCCTAGAGTATT 59.337 40.000 0.00 0.00 35.26 1.89
3541 3638 5.757320 CACTAATCTGAGTGGCATTTCCTAG 59.243 44.000 0.00 0.00 42.68 3.02
3651 3748 2.408271 TAGCACTCCAGGAAATGCAG 57.592 50.000 22.14 0.00 40.63 4.41
3698 3795 8.738645 GGTAACTCAGATTTGATAACAGGAAT 57.261 34.615 0.00 0.00 31.68 3.01
3744 3841 2.166254 GCCCACATTACTCCCAACATTG 59.834 50.000 0.00 0.00 0.00 2.82
3801 3922 5.696724 CGCTCTTGTATTAGTTTATGGAGGG 59.303 44.000 0.00 0.00 0.00 4.30
3802 3923 6.281405 ACGCTCTTGTATTAGTTTATGGAGG 58.719 40.000 0.00 0.00 0.00 4.30
3803 3924 7.772332 AACGCTCTTGTATTAGTTTATGGAG 57.228 36.000 0.00 0.00 0.00 3.86
3804 3925 9.309516 CTAAACGCTCTTGTATTAGTTTATGGA 57.690 33.333 0.09 0.00 34.78 3.41
3805 3926 9.309516 TCTAAACGCTCTTGTATTAGTTTATGG 57.690 33.333 0.09 0.00 34.78 2.74
3809 3930 8.870879 GTGATCTAAACGCTCTTGTATTAGTTT 58.129 33.333 0.00 0.00 36.11 2.66
3810 3931 8.251721 AGTGATCTAAACGCTCTTGTATTAGTT 58.748 33.333 0.00 0.00 0.00 2.24
3811 3932 7.773149 AGTGATCTAAACGCTCTTGTATTAGT 58.227 34.615 0.00 0.00 0.00 2.24
3812 3933 9.388346 CTAGTGATCTAAACGCTCTTGTATTAG 57.612 37.037 0.00 0.00 0.00 1.73
3813 3934 8.900781 ACTAGTGATCTAAACGCTCTTGTATTA 58.099 33.333 0.00 0.00 0.00 0.98
3814 3935 7.773149 ACTAGTGATCTAAACGCTCTTGTATT 58.227 34.615 0.00 0.00 0.00 1.89
3815 3936 7.336161 ACTAGTGATCTAAACGCTCTTGTAT 57.664 36.000 0.00 0.00 0.00 2.29
3816 3937 6.754702 ACTAGTGATCTAAACGCTCTTGTA 57.245 37.500 0.00 0.00 0.00 2.41
3817 3938 5.646577 ACTAGTGATCTAAACGCTCTTGT 57.353 39.130 0.00 0.00 0.00 3.16
3818 3939 6.787225 ACTACTAGTGATCTAAACGCTCTTG 58.213 40.000 5.39 0.00 0.00 3.02
3834 3955 8.680039 ATAAGAGCGTTTAGATCACTACTAGT 57.320 34.615 0.00 0.00 37.82 2.57
3848 3969 9.017669 CGTCTGTAAACTAATATAAGAGCGTTT 57.982 33.333 0.00 0.00 0.00 3.60
3849 3970 7.646922 CCGTCTGTAAACTAATATAAGAGCGTT 59.353 37.037 0.00 0.00 0.00 4.84
3850 3971 7.012704 TCCGTCTGTAAACTAATATAAGAGCGT 59.987 37.037 0.00 0.00 0.00 5.07
3851 3972 7.358066 TCCGTCTGTAAACTAATATAAGAGCG 58.642 38.462 0.00 0.00 0.00 5.03
3852 3973 8.351461 ACTCCGTCTGTAAACTAATATAAGAGC 58.649 37.037 0.00 0.00 0.00 4.09
3862 3983 9.672673 ACTATTTAGTACTCCGTCTGTAAACTA 57.327 33.333 0.00 0.00 34.13 2.24
3863 3984 8.572855 ACTATTTAGTACTCCGTCTGTAAACT 57.427 34.615 0.00 0.00 34.13 2.66
3864 3985 9.283420 GAACTATTTAGTACTCCGTCTGTAAAC 57.717 37.037 0.00 0.00 34.99 2.01
3865 3986 9.236006 AGAACTATTTAGTACTCCGTCTGTAAA 57.764 33.333 0.00 0.00 34.99 2.01
3866 3987 8.671921 CAGAACTATTTAGTACTCCGTCTGTAA 58.328 37.037 0.00 0.00 34.99 2.41
3867 3988 8.043113 TCAGAACTATTTAGTACTCCGTCTGTA 58.957 37.037 0.00 0.00 36.15 2.74
3868 3989 6.883217 TCAGAACTATTTAGTACTCCGTCTGT 59.117 38.462 0.00 0.00 36.15 3.41
3869 3990 7.317842 TCAGAACTATTTAGTACTCCGTCTG 57.682 40.000 0.00 4.68 36.09 3.51
3870 3991 9.054922 GTATCAGAACTATTTAGTACTCCGTCT 57.945 37.037 0.00 0.00 34.99 4.18
3871 3992 8.288913 GGTATCAGAACTATTTAGTACTCCGTC 58.711 40.741 0.00 0.00 34.99 4.79
3872 3993 7.997803 AGGTATCAGAACTATTTAGTACTCCGT 59.002 37.037 0.00 0.00 34.99 4.69
3873 3994 8.291032 CAGGTATCAGAACTATTTAGTACTCCG 58.709 40.741 0.00 0.00 34.99 4.63
3874 3995 9.134055 ACAGGTATCAGAACTATTTAGTACTCC 57.866 37.037 0.00 0.00 34.99 3.85
3879 4000 9.490083 AGGTAACAGGTATCAGAACTATTTAGT 57.510 33.333 0.00 0.00 37.26 2.24
3906 4027 6.764379 TGCTCCATCCAATACGATGTAAATA 58.236 36.000 0.00 0.00 38.39 1.40
3915 4036 2.549754 GGTCAATGCTCCATCCAATACG 59.450 50.000 0.00 0.00 0.00 3.06
3932 4054 3.562141 CACTTGGTCGTTTTACATGGTCA 59.438 43.478 0.00 0.00 0.00 4.02
3933 4055 3.810941 TCACTTGGTCGTTTTACATGGTC 59.189 43.478 0.00 0.00 0.00 4.02
3941 4069 3.081804 GGGATGATCACTTGGTCGTTTT 58.918 45.455 0.00 0.00 0.00 2.43
3950 4078 4.387026 TTTGTTCCAGGGATGATCACTT 57.613 40.909 0.00 0.00 0.00 3.16
3960 4088 3.749665 TCTGCAAAATTTGTTCCAGGG 57.250 42.857 7.60 0.00 0.00 4.45
4064 4192 4.978099 ACAGTAGGGGATGAATATGCAAG 58.022 43.478 0.00 0.00 0.00 4.01
4079 4207 7.264373 AGAAAGATTTGTGACAAACAGTAGG 57.736 36.000 13.56 0.00 40.74 3.18
4081 4209 9.391006 AGTTAGAAAGATTTGTGACAAACAGTA 57.609 29.630 13.56 0.00 40.74 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.