Multiple sequence alignment - TraesCS2B01G185800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G185800 chr2B 100.000 6603 0 0 1 6603 160899576 160906178 0.000000e+00 12194
1 TraesCS2B01G185800 chr2D 93.939 5808 205 62 266 5995 111148828 111154566 0.000000e+00 8639
2 TraesCS2B01G185800 chr2D 84.507 426 25 15 6024 6437 111154567 111154963 3.740000e-102 383
3 TraesCS2B01G185800 chr2D 97.436 156 4 0 1 156 272176601 272176756 3.930000e-67 267
4 TraesCS2B01G185800 chr2D 96.273 161 6 0 1 161 161907007 161906847 1.410000e-66 265
5 TraesCS2B01G185800 chr2A 93.740 5703 219 57 747 6374 108266793 108272432 0.000000e+00 8427
6 TraesCS2B01G185800 chr2A 97.826 138 2 1 263 399 108266035 108266172 3.080000e-58 237
7 TraesCS2B01G185800 chr2A 88.785 107 9 2 461 567 108266174 108266277 1.930000e-25 128
8 TraesCS2B01G185800 chr6D 97.436 156 4 0 1 156 389700550 389700705 3.930000e-67 267
9 TraesCS2B01G185800 chr6D 96.795 156 5 0 1 156 392896984 392897139 1.830000e-65 261
10 TraesCS2B01G185800 chr5D 97.436 156 4 0 1 156 142328074 142328229 3.930000e-67 267
11 TraesCS2B01G185800 chr4D 97.436 156 4 0 1 156 452926144 452926299 3.930000e-67 267
12 TraesCS2B01G185800 chr4D 94.737 171 7 2 1 171 93338051 93338219 1.410000e-66 265
13 TraesCS2B01G185800 chr3D 97.436 156 4 0 1 156 467257838 467257993 3.930000e-67 267
14 TraesCS2B01G185800 chr1D 96.273 161 6 0 1 161 198055693 198055853 1.410000e-66 265


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G185800 chr2B 160899576 160906178 6602 False 12194.000000 12194 100.000000 1 6603 1 chr2B.!!$F1 6602
1 TraesCS2B01G185800 chr2D 111148828 111154963 6135 False 4511.000000 8639 89.223000 266 6437 2 chr2D.!!$F2 6171
2 TraesCS2B01G185800 chr2A 108266035 108272432 6397 False 2930.666667 8427 93.450333 263 6374 3 chr2A.!!$F1 6111

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 459 0.962356 AAAAGATCCAGCACGCAGGG 60.962 55.000 0.17 0.00 0.00 4.45 F
789 1131 1.096416 GTACTGGACACCTCTCTCCG 58.904 60.000 0.00 0.00 0.00 4.63 F
2097 2451 1.673665 GCCAGTGAGCTCCCAACAG 60.674 63.158 12.15 0.00 0.00 3.16 F
2303 2659 2.218530 GCATGTCGTTTTCTGCCAAAAC 59.781 45.455 9.91 9.91 36.92 2.43 F
3700 4060 0.524862 GCATTGGAGGTGTCTTGCTG 59.475 55.000 0.00 0.00 0.00 4.41 F
4584 4947 1.135575 CGGAATTTGTTCCTGCTGCTC 60.136 52.381 0.00 0.00 38.96 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2303 2659 0.787787 TTTCCGAGTCGCGACAAATG 59.212 50.000 37.85 23.64 44.57 2.32 R
2418 2774 1.459592 CTTGTAAACCCGCTCACGAAG 59.540 52.381 0.00 0.00 43.93 3.79 R
3049 3409 1.543429 CCCAACACTGAAGGGACAGAC 60.543 57.143 0.00 0.00 45.80 3.51 R
4000 4360 2.508887 GCTGCAGCTGAGGTCTCG 60.509 66.667 31.33 0.00 38.21 4.04 R
5021 5387 0.034198 TTCCGCGTCAACATCTCCAA 59.966 50.000 4.92 0.00 0.00 3.53 R
6456 6889 0.031857 TTGGTGGTGGTACGTACGTG 59.968 55.000 30.25 0.00 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.490663 CGTGCCTAAATATTTGTCTTTTTAGAG 57.509 33.333 11.05 0.00 34.90 2.43
49 50 8.873830 AGAGATTTCAACAATTGACTACATACG 58.126 33.333 13.59 0.00 39.87 3.06
50 51 7.974675 AGATTTCAACAATTGACTACATACGG 58.025 34.615 13.59 0.00 39.87 4.02
51 52 7.822334 AGATTTCAACAATTGACTACATACGGA 59.178 33.333 13.59 0.00 39.87 4.69
52 53 6.961359 TTCAACAATTGACTACATACGGAG 57.039 37.500 13.59 0.00 39.87 4.63
53 54 4.868171 TCAACAATTGACTACATACGGAGC 59.132 41.667 13.59 0.00 34.08 4.70
54 55 4.465632 ACAATTGACTACATACGGAGCA 57.534 40.909 13.59 0.00 0.00 4.26
55 56 4.827692 ACAATTGACTACATACGGAGCAA 58.172 39.130 13.59 0.00 0.00 3.91
56 57 5.242434 ACAATTGACTACATACGGAGCAAA 58.758 37.500 13.59 0.00 0.00 3.68
57 58 5.703592 ACAATTGACTACATACGGAGCAAAA 59.296 36.000 13.59 0.00 0.00 2.44
58 59 6.374333 ACAATTGACTACATACGGAGCAAAAT 59.626 34.615 13.59 0.00 0.00 1.82
59 60 5.794687 TTGACTACATACGGAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
60 61 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
61 62 5.109210 TGACTACATACGGAGCAAAATGAG 58.891 41.667 0.00 0.00 0.00 2.90
62 63 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
63 64 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
64 65 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
65 66 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
66 67 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
67 68 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
68 69 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
69 70 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
70 71 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
71 72 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
72 73 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
105 106 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
107 108 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
108 109 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
109 110 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
110 111 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
111 112 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
112 113 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
113 114 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
114 115 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
115 116 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
116 117 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
117 118 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
118 119 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
119 120 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
120 121 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
121 122 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
122 123 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
123 124 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
124 125 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
125 126 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
126 127 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
127 128 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
128 129 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
132 133 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
133 134 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
152 153 9.720769 AAAGACAAATATTTAGAAACGGAGAGA 57.279 29.630 0.00 0.00 0.00 3.10
153 154 8.934507 AGACAAATATTTAGAAACGGAGAGAG 57.065 34.615 0.00 0.00 0.00 3.20
154 155 8.532819 AGACAAATATTTAGAAACGGAGAGAGT 58.467 33.333 0.00 0.00 0.00 3.24
155 156 9.798994 GACAAATATTTAGAAACGGAGAGAGTA 57.201 33.333 0.00 0.00 0.00 2.59
156 157 9.583765 ACAAATATTTAGAAACGGAGAGAGTAC 57.416 33.333 0.00 0.00 0.00 2.73
157 158 9.804758 CAAATATTTAGAAACGGAGAGAGTACT 57.195 33.333 0.00 0.00 0.00 2.73
160 161 7.934855 ATTTAGAAACGGAGAGAGTACTACA 57.065 36.000 0.00 0.00 0.00 2.74
161 162 6.734104 TTAGAAACGGAGAGAGTACTACAC 57.266 41.667 0.00 0.00 0.00 2.90
162 163 4.909001 AGAAACGGAGAGAGTACTACACT 58.091 43.478 0.00 0.00 41.47 3.55
163 164 5.315348 AGAAACGGAGAGAGTACTACACTT 58.685 41.667 0.00 0.00 37.72 3.16
164 165 5.412286 AGAAACGGAGAGAGTACTACACTTC 59.588 44.000 0.00 0.00 37.72 3.01
165 166 4.283363 ACGGAGAGAGTACTACACTTCA 57.717 45.455 0.00 0.00 37.72 3.02
166 167 4.255301 ACGGAGAGAGTACTACACTTCAG 58.745 47.826 0.00 0.00 37.72 3.02
167 168 3.064271 CGGAGAGAGTACTACACTTCAGC 59.936 52.174 0.00 0.00 37.72 4.26
168 169 4.011023 GGAGAGAGTACTACACTTCAGCA 58.989 47.826 0.00 0.00 37.72 4.41
169 170 4.642885 GGAGAGAGTACTACACTTCAGCAT 59.357 45.833 0.00 0.00 37.72 3.79
170 171 5.449862 GGAGAGAGTACTACACTTCAGCATG 60.450 48.000 0.00 0.00 37.72 4.06
243 244 9.391006 TGTCATATATCAGAAAGTAAACAACCC 57.609 33.333 0.00 0.00 0.00 4.11
244 245 9.391006 GTCATATATCAGAAAGTAAACAACCCA 57.609 33.333 0.00 0.00 0.00 4.51
245 246 9.613428 TCATATATCAGAAAGTAAACAACCCAG 57.387 33.333 0.00 0.00 0.00 4.45
246 247 9.613428 CATATATCAGAAAGTAAACAACCCAGA 57.387 33.333 0.00 0.00 0.00 3.86
249 250 6.633500 TCAGAAAGTAAACAACCCAGAATG 57.367 37.500 0.00 0.00 0.00 2.67
250 251 6.361433 TCAGAAAGTAAACAACCCAGAATGA 58.639 36.000 0.00 0.00 39.69 2.57
251 252 6.831353 TCAGAAAGTAAACAACCCAGAATGAA 59.169 34.615 0.00 0.00 39.69 2.57
252 253 7.340743 TCAGAAAGTAAACAACCCAGAATGAAA 59.659 33.333 0.00 0.00 39.69 2.69
253 254 7.978975 CAGAAAGTAAACAACCCAGAATGAAAA 59.021 33.333 0.00 0.00 39.69 2.29
254 255 8.536175 AGAAAGTAAACAACCCAGAATGAAAAA 58.464 29.630 0.00 0.00 39.69 1.94
280 281 7.452880 TCTTCACTATTTGTTGAATTGAGGG 57.547 36.000 0.00 0.00 0.00 4.30
283 284 7.595819 TCACTATTTGTTGAATTGAGGGTTT 57.404 32.000 0.00 0.00 0.00 3.27
430 431 7.757173 CACTCGAGACATTTTCTTCTCTCATAA 59.243 37.037 21.68 0.00 36.82 1.90
458 459 0.962356 AAAAGATCCAGCACGCAGGG 60.962 55.000 0.17 0.00 0.00 4.45
492 493 3.758554 GTCACCCTGCATCTTGTGTAATT 59.241 43.478 0.00 0.00 0.00 1.40
570 589 4.803088 ACATGAAACAAACACATGAAACCG 59.197 37.500 12.24 0.00 42.41 4.44
578 597 6.045955 ACAAACACATGAAACCGCTAAAATT 58.954 32.000 0.00 0.00 0.00 1.82
620 650 8.854614 AGAGAAACTCATTATACAAGTTGCTT 57.145 30.769 1.81 0.00 38.70 3.91
627 662 8.696374 ACTCATTATACAAGTTGCTTCTAGCTA 58.304 33.333 1.81 0.00 42.97 3.32
637 672 4.008074 TGCTTCTAGCTACAAAAGTGCT 57.992 40.909 0.00 0.00 42.97 4.40
641 676 5.639931 GCTTCTAGCTACAAAAGTGCTAAGT 59.360 40.000 0.00 0.00 38.59 2.24
644 679 6.320171 TCTAGCTACAAAAGTGCTAAGTACG 58.680 40.000 0.00 0.00 38.59 3.67
645 680 4.879598 AGCTACAAAAGTGCTAAGTACGT 58.120 39.130 0.00 0.00 35.05 3.57
646 681 6.017400 AGCTACAAAAGTGCTAAGTACGTA 57.983 37.500 0.00 0.00 35.05 3.57
649 684 6.144402 GCTACAAAAGTGCTAAGTACGTAACA 59.856 38.462 0.00 0.00 0.00 2.41
650 685 6.520792 ACAAAAGTGCTAAGTACGTAACAG 57.479 37.500 0.00 0.00 0.00 3.16
652 687 6.199719 ACAAAAGTGCTAAGTACGTAACAGAC 59.800 38.462 0.00 0.00 0.00 3.51
653 688 5.702349 AAGTGCTAAGTACGTAACAGACT 57.298 39.130 0.00 0.00 0.00 3.24
655 690 6.808008 AGTGCTAAGTACGTAACAGACTAA 57.192 37.500 0.00 0.00 0.00 2.24
657 692 6.205464 AGTGCTAAGTACGTAACAGACTAACA 59.795 38.462 0.00 0.00 0.00 2.41
658 693 7.025963 GTGCTAAGTACGTAACAGACTAACAT 58.974 38.462 0.00 0.00 0.00 2.71
659 694 8.177663 GTGCTAAGTACGTAACAGACTAACATA 58.822 37.037 0.00 0.00 0.00 2.29
660 695 8.896744 TGCTAAGTACGTAACAGACTAACATAT 58.103 33.333 0.00 0.00 0.00 1.78
665 700 9.177608 AGTACGTAACAGACTAACATATAACCA 57.822 33.333 0.00 0.00 0.00 3.67
668 703 7.972277 ACGTAACAGACTAACATATAACCACTG 59.028 37.037 0.00 0.00 0.00 3.66
669 704 7.434307 CGTAACAGACTAACATATAACCACTGG 59.566 40.741 0.00 0.00 0.00 4.00
670 705 6.869206 ACAGACTAACATATAACCACTGGT 57.131 37.500 0.00 0.00 37.65 4.00
671 706 6.875076 ACAGACTAACATATAACCACTGGTC 58.125 40.000 0.00 0.00 33.12 4.02
694 1009 5.307976 TCAATCCACATCCATAAGAGTAGGG 59.692 44.000 0.00 0.00 32.09 3.53
728 1043 5.721232 ACTATAGTTTACACAGTGACAGGC 58.279 41.667 7.81 0.00 0.00 4.85
789 1131 1.096416 GTACTGGACACCTCTCTCCG 58.904 60.000 0.00 0.00 0.00 4.63
991 1341 2.034687 GCAGCTTGCCTTCCCAGA 59.965 61.111 0.00 0.00 37.42 3.86
1021 1371 3.777925 CCGCGCTCCACGTTCTTG 61.778 66.667 5.56 0.00 46.11 3.02
1026 1376 1.862806 GCTCCACGTTCTTGTGCTC 59.137 57.895 0.00 0.00 38.55 4.26
1512 1862 2.936912 CGATGGGATCCGGGAGCTC 61.937 68.421 12.67 9.04 0.00 4.09
1731 2081 1.807573 CGGCTTCTTCAGGAGCGAC 60.808 63.158 0.79 0.00 0.00 5.19
1959 2309 1.850345 TCACCCTTTTCCCAGTGAGTT 59.150 47.619 0.00 0.00 34.44 3.01
2037 2391 3.873801 GCTGGAATAGTGGTGATGTTGGT 60.874 47.826 0.00 0.00 0.00 3.67
2094 2448 2.202236 GATGGCCAGTGAGCTCCCAA 62.202 60.000 13.05 0.00 30.11 4.12
2095 2449 2.360475 GGCCAGTGAGCTCCCAAC 60.360 66.667 12.15 2.54 0.00 3.77
2097 2451 1.673665 GCCAGTGAGCTCCCAACAG 60.674 63.158 12.15 0.00 0.00 3.16
2123 2479 4.395519 TTGGATCACAAGCACCGG 57.604 55.556 0.00 0.00 33.18 5.28
2208 2564 3.083293 TGCACAGATTCTTTGCTGCATA 58.917 40.909 21.79 0.00 37.16 3.14
2220 2576 5.831525 TCTTTGCTGCATATTGAATCTGGAT 59.168 36.000 1.84 0.00 0.00 3.41
2303 2659 2.218530 GCATGTCGTTTTCTGCCAAAAC 59.781 45.455 9.91 9.91 36.92 2.43
2427 2783 3.963383 TTTTTGGTCTTCTTCGTGAGC 57.037 42.857 0.00 0.00 0.00 4.26
2688 3047 3.307059 GGGACAGCTTTCATGACTAGTGT 60.307 47.826 0.00 3.84 0.00 3.55
2695 3055 4.201792 GCTTTCATGACTAGTGTGCATGAG 60.202 45.833 19.37 13.23 46.17 2.90
2736 3096 7.173735 TGAATAATTGCCATATGTCTACAGCTG 59.826 37.037 13.48 13.48 0.00 4.24
2737 3097 3.912496 TTGCCATATGTCTACAGCTGT 57.088 42.857 25.12 25.12 0.00 4.40
2738 3098 5.551305 ATTGCCATATGTCTACAGCTGTA 57.449 39.130 24.63 24.63 0.00 2.74
2739 3099 5.351948 TTGCCATATGTCTACAGCTGTAA 57.648 39.130 25.95 13.18 0.00 2.41
2740 3100 5.351948 TGCCATATGTCTACAGCTGTAAA 57.648 39.130 25.95 12.22 0.00 2.01
2741 3101 5.928976 TGCCATATGTCTACAGCTGTAAAT 58.071 37.500 25.95 20.37 0.00 1.40
2742 3102 6.356556 TGCCATATGTCTACAGCTGTAAATT 58.643 36.000 25.95 13.96 0.00 1.82
2761 3121 4.519540 ATTGTAATTGACTTGTGTGCCC 57.480 40.909 0.00 0.00 0.00 5.36
2923 3283 2.360801 TGGGGAATTAGCTATTTTGCGC 59.639 45.455 0.00 0.00 38.13 6.09
3049 3409 1.199097 CGGAACAATTCGTTGAAGGGG 59.801 52.381 0.00 0.00 38.19 4.79
3118 3478 2.082231 CTCAGTCTGAATGCACTTGGG 58.918 52.381 3.67 0.00 0.00 4.12
3238 3598 6.182627 TCATTCAACAGAGTCCATAATGCTT 58.817 36.000 0.00 0.00 0.00 3.91
3331 3691 6.959639 ATTTCTAACCTGCAAAGACTTGAA 57.040 33.333 0.00 0.00 34.14 2.69
3397 3757 5.884792 AGATGAGATAAACAAGCTTCAAGGG 59.115 40.000 0.00 0.00 0.00 3.95
3403 3763 2.452600 ACAAGCTTCAAGGGTTGGAA 57.547 45.000 0.00 0.00 45.46 3.53
3499 3859 9.476202 TTCAATGTATCTTACAATGATCTACGG 57.524 33.333 6.32 0.00 45.12 4.02
3550 3910 5.514500 TTCCCATAACTTGCTTTAGACCT 57.486 39.130 0.00 0.00 0.00 3.85
3597 3957 1.065199 TGGTCTGCCTGCTCCAAATAG 60.065 52.381 0.00 0.00 35.27 1.73
3700 4060 0.524862 GCATTGGAGGTGTCTTGCTG 59.475 55.000 0.00 0.00 0.00 4.41
3714 4074 3.559242 GTCTTGCTGGTGATCTTCATAGC 59.441 47.826 0.00 8.76 38.82 2.97
3760 4120 5.240403 GTCTCAAGAGCTTTGTGGAAGAAAT 59.760 40.000 0.00 0.00 37.57 2.17
3778 4138 6.770286 AGAAATGGATTTAGAGGCCAGATA 57.230 37.500 5.01 0.00 34.74 1.98
3821 4181 3.181479 GGGGAAATTAAGCCGTCCAAATC 60.181 47.826 0.00 0.00 31.30 2.17
3856 4216 7.671398 AGTCCAAAAGATAATGTCATTCCAACT 59.329 33.333 0.07 0.00 0.00 3.16
4000 4360 1.618837 TCTACAAGCTCTGGTGTGACC 59.381 52.381 0.00 0.00 39.22 4.02
4339 4699 4.934356 AGGAGATAAAAAGGATTGGCACA 58.066 39.130 0.00 0.00 0.00 4.57
4481 4842 7.951347 AACTATCTCATGCTCATTTCCTTTT 57.049 32.000 0.00 0.00 0.00 2.27
4498 4859 4.648762 TCCTTTTGAATCTGCAACCTTTGA 59.351 37.500 0.00 0.00 0.00 2.69
4530 4893 5.390567 CCTTGTTAGTTCGATGTACTTTGCC 60.391 44.000 0.00 0.00 0.00 4.52
4532 4895 5.302360 TGTTAGTTCGATGTACTTTGCCTT 58.698 37.500 0.00 0.00 0.00 4.35
4552 4915 8.706492 TGCCTTCTTGCAATGAAATATTTAAG 57.294 30.769 0.00 0.57 38.56 1.85
4553 4916 8.530311 TGCCTTCTTGCAATGAAATATTTAAGA 58.470 29.630 0.00 2.98 38.56 2.10
4569 4932 5.677319 TTTAAGACTCATCACCTCGGAAT 57.323 39.130 0.00 0.00 0.00 3.01
4584 4947 1.135575 CGGAATTTGTTCCTGCTGCTC 60.136 52.381 0.00 0.00 38.96 4.26
4801 5167 1.561542 CTACACCATGAGAAGGGCCTT 59.438 52.381 21.09 21.09 0.00 4.35
5020 5386 4.622456 GCGTTTGGCGTGGTGGTG 62.622 66.667 0.00 0.00 43.66 4.17
5021 5387 3.206246 CGTTTGGCGTGGTGGTGT 61.206 61.111 0.00 0.00 35.54 4.16
5071 5437 1.300465 CATCATCTCGGGGCAGTCG 60.300 63.158 0.00 0.00 0.00 4.18
5343 5710 5.927689 TGTACATGTAACCGATTTTTCTCGT 59.072 36.000 7.25 0.00 36.93 4.18
5344 5711 5.526010 ACATGTAACCGATTTTTCTCGTC 57.474 39.130 0.00 0.00 36.93 4.20
5345 5712 4.090930 ACATGTAACCGATTTTTCTCGTCG 59.909 41.667 0.00 0.00 36.93 5.12
5552 5919 1.825474 CCTGTTGGTATCCACTCGTCT 59.175 52.381 0.00 0.00 30.78 4.18
5584 5951 3.641437 TTCTTTTTGTGCAGAATCGGG 57.359 42.857 0.00 0.00 0.00 5.14
5629 5996 0.036388 AGTGCTGTCCATGTTACCCG 60.036 55.000 0.00 0.00 0.00 5.28
5634 6001 1.298667 GTCCATGTTACCCGGCACT 59.701 57.895 0.00 0.00 0.00 4.40
5746 6121 4.162690 GTCTGGGGCGGCTACAGG 62.163 72.222 25.20 12.77 33.19 4.00
5748 6123 4.162690 CTGGGGCGGCTACAGGTC 62.163 72.222 20.68 0.00 0.00 3.85
5809 6184 1.518102 GCATGATTTATTGCGTTGGCG 59.482 47.619 0.00 0.00 44.10 5.69
5908 6287 0.166814 GTGCTGTCTGATCAAACCGC 59.833 55.000 8.49 8.49 0.00 5.68
5960 6359 2.359967 GCCCTAGGTGCTCGGAACT 61.360 63.158 8.29 0.00 0.00 3.01
5966 6365 3.050275 GTGCTCGGAACTGCCACC 61.050 66.667 0.00 0.00 35.94 4.61
5972 6377 2.047179 GGAACTGCCACCGGAGTC 60.047 66.667 9.46 0.00 36.34 3.36
5995 6400 3.418913 CGCACGGTGAAATCGGCA 61.419 61.111 13.29 0.00 0.00 5.69
5998 6403 2.746277 ACGGTGAAATCGGCAGCC 60.746 61.111 0.00 0.00 0.00 4.85
6064 6472 3.092301 GAGGAAGATTTTGGTCCTTGGG 58.908 50.000 0.00 0.00 41.98 4.12
6089 6503 1.004440 GAGCGGAGGTGATATGGGC 60.004 63.158 0.00 0.00 39.88 5.36
6150 6574 1.373497 GTGGTCCTCTGTCTGCACG 60.373 63.158 0.00 0.00 0.00 5.34
6161 6591 3.434319 CTGCACGCCACATGGGAC 61.434 66.667 0.00 0.00 40.01 4.46
6182 6612 2.839324 GAACGCGCAGATGCAGTTGG 62.839 60.000 16.84 0.00 40.09 3.77
6183 6613 4.824166 CGCGCAGATGCAGTTGGC 62.824 66.667 8.75 0.00 42.21 4.52
6209 6639 3.127533 GCTGATCGCCCGCTTGTT 61.128 61.111 0.00 0.00 0.00 2.83
6210 6640 1.813753 GCTGATCGCCCGCTTGTTA 60.814 57.895 0.00 0.00 0.00 2.41
6211 6641 1.766143 GCTGATCGCCCGCTTGTTAG 61.766 60.000 0.00 0.00 0.00 2.34
6272 6702 3.181497 CGGCTGGAACGATTTGATTGATT 60.181 43.478 0.00 0.00 0.00 2.57
6281 6711 4.095483 ACGATTTGATTGATTGCTCTGTCC 59.905 41.667 0.00 0.00 0.00 4.02
6314 6744 1.269174 AGATCAGATCATCGTCTGCCG 59.731 52.381 13.14 0.00 44.15 5.69
6318 6748 4.512961 ATCATCGTCTGCCGCGCA 62.513 61.111 8.75 1.04 36.92 6.09
6325 6755 3.433453 TCTGCCGCGCACGTACTA 61.433 61.111 8.75 0.00 37.70 1.82
6357 6788 0.804989 GAATGTTCCCTGTTGCGAGG 59.195 55.000 0.00 0.00 0.00 4.63
6376 6807 2.464459 CGGAGTGAATTCCTGCCGC 61.464 63.158 14.31 0.00 34.96 6.53
6395 6826 1.087771 CCCACCCGAGTAAATGACGC 61.088 60.000 0.00 0.00 0.00 5.19
6468 6901 2.869646 CGGAGCACGTACGTACCA 59.130 61.111 22.34 0.00 37.93 3.25
6469 6902 1.512734 CGGAGCACGTACGTACCAC 60.513 63.158 22.34 13.07 37.93 4.16
6470 6903 1.153958 GGAGCACGTACGTACCACC 60.154 63.158 22.34 17.93 0.00 4.61
6471 6904 1.580942 GAGCACGTACGTACCACCA 59.419 57.895 22.34 0.00 0.00 4.17
6472 6905 0.730494 GAGCACGTACGTACCACCAC 60.730 60.000 22.34 4.84 0.00 4.16
6473 6906 1.734117 GCACGTACGTACCACCACC 60.734 63.158 22.34 0.00 0.00 4.61
6474 6907 1.659233 CACGTACGTACCACCACCA 59.341 57.895 22.34 0.00 0.00 4.17
6475 6908 0.031857 CACGTACGTACCACCACCAA 59.968 55.000 22.34 0.00 0.00 3.67
6476 6909 0.749649 ACGTACGTACCACCACCAAA 59.250 50.000 21.41 0.00 0.00 3.28
6477 6910 1.139163 CGTACGTACCACCACCAAAC 58.861 55.000 19.67 0.00 0.00 2.93
6478 6911 1.511850 GTACGTACCACCACCAAACC 58.488 55.000 15.00 0.00 0.00 3.27
6479 6912 0.396060 TACGTACCACCACCAAACCC 59.604 55.000 0.00 0.00 0.00 4.11
6480 6913 1.148723 CGTACCACCACCAAACCCA 59.851 57.895 0.00 0.00 0.00 4.51
6481 6914 1.167781 CGTACCACCACCAAACCCAC 61.168 60.000 0.00 0.00 0.00 4.61
6482 6915 0.824595 GTACCACCACCAAACCCACC 60.825 60.000 0.00 0.00 0.00 4.61
6483 6916 0.994591 TACCACCACCAAACCCACCT 60.995 55.000 0.00 0.00 0.00 4.00
6484 6917 1.530655 CCACCACCAAACCCACCTC 60.531 63.158 0.00 0.00 0.00 3.85
6485 6918 1.530655 CACCACCAAACCCACCTCC 60.531 63.158 0.00 0.00 0.00 4.30
6486 6919 2.282180 CCACCAAACCCACCTCCG 60.282 66.667 0.00 0.00 0.00 4.63
6487 6920 2.983592 CACCAAACCCACCTCCGC 60.984 66.667 0.00 0.00 0.00 5.54
6488 6921 3.175710 ACCAAACCCACCTCCGCT 61.176 61.111 0.00 0.00 0.00 5.52
6489 6922 2.672996 CCAAACCCACCTCCGCTG 60.673 66.667 0.00 0.00 0.00 5.18
6490 6923 3.365265 CAAACCCACCTCCGCTGC 61.365 66.667 0.00 0.00 0.00 5.25
6491 6924 3.570212 AAACCCACCTCCGCTGCT 61.570 61.111 0.00 0.00 0.00 4.24
6492 6925 3.850098 AAACCCACCTCCGCTGCTG 62.850 63.158 0.00 0.00 0.00 4.41
6496 6929 4.790962 CACCTCCGCTGCTGCCAT 62.791 66.667 10.24 0.00 35.36 4.40
6497 6930 4.790962 ACCTCCGCTGCTGCCATG 62.791 66.667 10.24 0.00 35.36 3.66
6502 6935 4.266070 CGCTGCTGCCATGCCATC 62.266 66.667 10.24 0.00 35.36 3.51
6503 6936 3.912907 GCTGCTGCCATGCCATCC 61.913 66.667 3.85 0.00 0.00 3.51
6504 6937 2.123854 CTGCTGCCATGCCATCCT 60.124 61.111 0.00 0.00 0.00 3.24
6505 6938 1.149854 CTGCTGCCATGCCATCCTA 59.850 57.895 0.00 0.00 0.00 2.94
6506 6939 0.466739 CTGCTGCCATGCCATCCTAA 60.467 55.000 0.00 0.00 0.00 2.69
6507 6940 0.186630 TGCTGCCATGCCATCCTAAT 59.813 50.000 0.00 0.00 0.00 1.73
6508 6941 0.886563 GCTGCCATGCCATCCTAATC 59.113 55.000 0.00 0.00 0.00 1.75
6509 6942 1.547223 GCTGCCATGCCATCCTAATCT 60.547 52.381 0.00 0.00 0.00 2.40
6510 6943 2.160205 CTGCCATGCCATCCTAATCTG 58.840 52.381 0.00 0.00 0.00 2.90
6511 6944 0.886563 GCCATGCCATCCTAATCTGC 59.113 55.000 0.00 0.00 0.00 4.26
6512 6945 1.542492 CCATGCCATCCTAATCTGCC 58.458 55.000 0.00 0.00 0.00 4.85
6513 6946 1.202964 CCATGCCATCCTAATCTGCCA 60.203 52.381 0.00 0.00 0.00 4.92
6514 6947 2.556782 CCATGCCATCCTAATCTGCCAT 60.557 50.000 0.00 0.00 0.00 4.40
6515 6948 3.162666 CATGCCATCCTAATCTGCCATT 58.837 45.455 0.00 0.00 0.00 3.16
6516 6949 2.589720 TGCCATCCTAATCTGCCATTG 58.410 47.619 0.00 0.00 0.00 2.82
6517 6950 1.271656 GCCATCCTAATCTGCCATTGC 59.728 52.381 0.00 0.00 38.26 3.56
6518 6951 1.891150 CCATCCTAATCTGCCATTGCC 59.109 52.381 0.00 0.00 36.33 4.52
6519 6952 1.538512 CATCCTAATCTGCCATTGCCG 59.461 52.381 0.00 0.00 36.33 5.69
6520 6953 0.836606 TCCTAATCTGCCATTGCCGA 59.163 50.000 0.00 0.00 35.09 5.54
6521 6954 1.202687 TCCTAATCTGCCATTGCCGAG 60.203 52.381 0.00 0.00 34.04 4.63
6522 6955 1.202687 CCTAATCTGCCATTGCCGAGA 60.203 52.381 0.00 0.00 34.04 4.04
6523 6956 2.141517 CTAATCTGCCATTGCCGAGAG 58.858 52.381 0.00 0.00 34.04 3.20
6524 6957 0.254178 AATCTGCCATTGCCGAGAGT 59.746 50.000 0.00 0.00 34.04 3.24
6525 6958 1.123077 ATCTGCCATTGCCGAGAGTA 58.877 50.000 0.00 0.00 34.04 2.59
6526 6959 0.461548 TCTGCCATTGCCGAGAGTAG 59.538 55.000 0.00 0.00 36.33 2.57
6527 6960 0.461548 CTGCCATTGCCGAGAGTAGA 59.538 55.000 0.00 0.00 36.33 2.59
6528 6961 0.461548 TGCCATTGCCGAGAGTAGAG 59.538 55.000 0.00 0.00 36.33 2.43
6529 6962 0.878086 GCCATTGCCGAGAGTAGAGC 60.878 60.000 0.00 0.00 0.00 4.09
6530 6963 0.596083 CCATTGCCGAGAGTAGAGCG 60.596 60.000 0.00 0.00 0.00 5.03
6531 6964 1.066587 ATTGCCGAGAGTAGAGCGC 59.933 57.895 0.00 0.00 0.00 5.92
6532 6965 2.669808 ATTGCCGAGAGTAGAGCGCG 62.670 60.000 0.00 0.00 0.00 6.86
6533 6966 4.615834 GCCGAGAGTAGAGCGCGG 62.616 72.222 8.83 0.00 44.47 6.46
6534 6967 3.955101 CCGAGAGTAGAGCGCGGG 61.955 72.222 8.83 0.00 38.40 6.13
6535 6968 4.615834 CGAGAGTAGAGCGCGGGC 62.616 72.222 17.92 17.92 40.37 6.13
6536 6969 3.518998 GAGAGTAGAGCGCGGGCA 61.519 66.667 27.20 2.55 43.41 5.36
6537 6970 3.064987 GAGAGTAGAGCGCGGGCAA 62.065 63.158 27.20 8.67 43.41 4.52
6538 6971 2.583593 GAGTAGAGCGCGGGCAAG 60.584 66.667 27.20 0.00 43.41 4.01
6539 6972 4.148825 AGTAGAGCGCGGGCAAGG 62.149 66.667 27.20 0.00 43.41 3.61
6549 6982 4.280019 GGGCAAGGGTTGGACGGT 62.280 66.667 0.00 0.00 0.00 4.83
6550 6983 2.983592 GGCAAGGGTTGGACGGTG 60.984 66.667 0.00 0.00 0.00 4.94
6551 6984 2.203294 GCAAGGGTTGGACGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
6552 6985 2.551912 GCAAGGGTTGGACGGTGTG 61.552 63.158 0.00 0.00 0.00 3.82
6553 6986 2.203294 AAGGGTTGGACGGTGTGC 60.203 61.111 0.00 0.00 0.00 4.57
6554 6987 3.785122 AAGGGTTGGACGGTGTGCC 62.785 63.158 0.00 0.00 0.00 5.01
6557 6990 4.265056 GTTGGACGGTGTGCCCCT 62.265 66.667 0.00 0.00 0.00 4.79
6558 6991 3.948719 TTGGACGGTGTGCCCCTC 61.949 66.667 0.00 0.00 0.00 4.30
6566 6999 4.414956 TGTGCCCCTCCCTCCGAT 62.415 66.667 0.00 0.00 0.00 4.18
6567 7000 3.551407 GTGCCCCTCCCTCCGATC 61.551 72.222 0.00 0.00 0.00 3.69
6568 7001 4.880426 TGCCCCTCCCTCCGATCC 62.880 72.222 0.00 0.00 0.00 3.36
6570 7003 4.541648 CCCCTCCCTCCGATCCGT 62.542 72.222 0.00 0.00 0.00 4.69
6571 7004 2.913060 CCCTCCCTCCGATCCGTC 60.913 72.222 0.00 0.00 0.00 4.79
6573 7006 3.967335 CTCCCTCCGATCCGTCGC 61.967 72.222 0.00 0.00 46.32 5.19
6574 7007 4.501285 TCCCTCCGATCCGTCGCT 62.501 66.667 0.00 0.00 46.32 4.93
6575 7008 4.271816 CCCTCCGATCCGTCGCTG 62.272 72.222 0.00 0.00 46.32 5.18
6576 7009 4.933064 CCTCCGATCCGTCGCTGC 62.933 72.222 0.00 0.00 46.32 5.25
6577 7010 4.933064 CTCCGATCCGTCGCTGCC 62.933 72.222 0.00 0.00 46.32 4.85
6579 7012 4.933064 CCGATCCGTCGCTGCCTC 62.933 72.222 0.00 0.00 46.32 4.70
6601 7034 3.423154 GCGGGTTCGTCAGCCAAG 61.423 66.667 6.44 0.00 44.25 3.61
6602 7035 3.423154 CGGGTTCGTCAGCCAAGC 61.423 66.667 6.44 0.00 44.25 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 8.873830 CGTATGTAGTCAATTGTTGAAATCTCT 58.126 33.333 5.13 0.00 42.15 3.10
24 25 8.116753 CCGTATGTAGTCAATTGTTGAAATCTC 58.883 37.037 5.13 0.00 42.15 2.75
25 26 7.822334 TCCGTATGTAGTCAATTGTTGAAATCT 59.178 33.333 5.13 0.00 42.15 2.40
26 27 7.970384 TCCGTATGTAGTCAATTGTTGAAATC 58.030 34.615 5.13 0.00 42.15 2.17
27 28 7.414098 GCTCCGTATGTAGTCAATTGTTGAAAT 60.414 37.037 5.13 0.00 42.15 2.17
28 29 6.128391 GCTCCGTATGTAGTCAATTGTTGAAA 60.128 38.462 5.13 0.00 42.15 2.69
29 30 5.350365 GCTCCGTATGTAGTCAATTGTTGAA 59.650 40.000 5.13 0.00 42.15 2.69
30 31 4.868171 GCTCCGTATGTAGTCAATTGTTGA 59.132 41.667 5.13 0.00 37.33 3.18
31 32 4.629634 TGCTCCGTATGTAGTCAATTGTTG 59.370 41.667 5.13 0.00 0.00 3.33
32 33 4.827692 TGCTCCGTATGTAGTCAATTGTT 58.172 39.130 5.13 0.00 0.00 2.83
33 34 4.465632 TGCTCCGTATGTAGTCAATTGT 57.534 40.909 5.13 0.00 0.00 2.71
34 35 5.794687 TTTGCTCCGTATGTAGTCAATTG 57.205 39.130 0.00 0.00 0.00 2.32
35 36 6.597672 TCATTTTGCTCCGTATGTAGTCAATT 59.402 34.615 0.00 0.00 0.00 2.32
36 37 6.112734 TCATTTTGCTCCGTATGTAGTCAAT 58.887 36.000 0.00 0.00 0.00 2.57
37 38 5.483811 TCATTTTGCTCCGTATGTAGTCAA 58.516 37.500 0.00 0.00 0.00 3.18
38 39 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
39 40 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
40 41 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
41 42 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
42 43 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
43 44 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
44 45 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
45 46 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
46 47 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
47 48 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
48 49 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
49 50 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
50 51 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
79 80 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
81 82 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
82 83 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
83 84 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
84 85 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
85 86 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
86 87 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
87 88 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
88 89 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
89 90 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
90 91 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
106 107 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
107 108 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
126 127 9.720769 TCTCTCCGTTTCTAAATATTTGTCTTT 57.279 29.630 11.05 0.00 0.00 2.52
127 128 9.372369 CTCTCTCCGTTTCTAAATATTTGTCTT 57.628 33.333 11.05 0.00 0.00 3.01
128 129 8.532819 ACTCTCTCCGTTTCTAAATATTTGTCT 58.467 33.333 11.05 0.00 0.00 3.41
129 130 8.705048 ACTCTCTCCGTTTCTAAATATTTGTC 57.295 34.615 11.05 0.00 0.00 3.18
130 131 9.583765 GTACTCTCTCCGTTTCTAAATATTTGT 57.416 33.333 11.05 0.00 0.00 2.83
131 132 9.804758 AGTACTCTCTCCGTTTCTAAATATTTG 57.195 33.333 11.05 1.65 0.00 2.32
134 135 9.624373 TGTAGTACTCTCTCCGTTTCTAAATAT 57.376 33.333 0.00 0.00 0.00 1.28
135 136 8.887717 GTGTAGTACTCTCTCCGTTTCTAAATA 58.112 37.037 0.00 0.00 0.00 1.40
136 137 7.611079 AGTGTAGTACTCTCTCCGTTTCTAAAT 59.389 37.037 0.00 0.00 33.17 1.40
137 138 6.939163 AGTGTAGTACTCTCTCCGTTTCTAAA 59.061 38.462 0.00 0.00 33.17 1.85
138 139 6.471146 AGTGTAGTACTCTCTCCGTTTCTAA 58.529 40.000 0.00 0.00 33.17 2.10
139 140 6.047511 AGTGTAGTACTCTCTCCGTTTCTA 57.952 41.667 0.00 0.00 33.17 2.10
140 141 4.909001 AGTGTAGTACTCTCTCCGTTTCT 58.091 43.478 0.00 0.00 33.17 2.52
141 142 5.180868 TGAAGTGTAGTACTCTCTCCGTTTC 59.819 44.000 0.00 0.00 39.18 2.78
142 143 5.068636 TGAAGTGTAGTACTCTCTCCGTTT 58.931 41.667 0.00 0.00 39.18 3.60
143 144 4.649692 TGAAGTGTAGTACTCTCTCCGTT 58.350 43.478 0.00 0.00 39.18 4.44
144 145 4.255301 CTGAAGTGTAGTACTCTCTCCGT 58.745 47.826 0.00 0.00 39.18 4.69
145 146 3.064271 GCTGAAGTGTAGTACTCTCTCCG 59.936 52.174 0.00 4.36 39.18 4.63
146 147 4.011023 TGCTGAAGTGTAGTACTCTCTCC 58.989 47.826 0.00 0.39 39.18 3.71
147 148 5.355630 TCATGCTGAAGTGTAGTACTCTCTC 59.644 44.000 0.00 6.51 39.18 3.20
148 149 5.257262 TCATGCTGAAGTGTAGTACTCTCT 58.743 41.667 0.00 0.00 39.18 3.10
149 150 5.568685 TCATGCTGAAGTGTAGTACTCTC 57.431 43.478 0.00 0.00 39.18 3.20
150 151 6.379703 AGAATCATGCTGAAGTGTAGTACTCT 59.620 38.462 0.00 0.00 39.18 3.24
151 152 6.475076 CAGAATCATGCTGAAGTGTAGTACTC 59.525 42.308 0.00 0.00 39.18 2.59
152 153 6.153510 TCAGAATCATGCTGAAGTGTAGTACT 59.846 38.462 0.00 0.00 39.29 2.73
153 154 6.333416 TCAGAATCATGCTGAAGTGTAGTAC 58.667 40.000 0.00 0.00 39.29 2.73
154 155 6.530019 TCAGAATCATGCTGAAGTGTAGTA 57.470 37.500 0.00 0.00 39.29 1.82
155 156 5.411831 TCAGAATCATGCTGAAGTGTAGT 57.588 39.130 0.00 0.00 39.29 2.73
156 157 6.922247 AATCAGAATCATGCTGAAGTGTAG 57.078 37.500 0.00 0.00 44.71 2.74
157 158 7.692460 AAAATCAGAATCATGCTGAAGTGTA 57.308 32.000 0.00 0.00 44.71 2.90
158 159 6.585695 AAAATCAGAATCATGCTGAAGTGT 57.414 33.333 0.00 0.00 44.71 3.55
217 218 9.391006 GGGTTGTTTACTTTCTGATATATGACA 57.609 33.333 0.00 0.00 0.00 3.58
218 219 9.391006 TGGGTTGTTTACTTTCTGATATATGAC 57.609 33.333 0.00 0.00 0.00 3.06
219 220 9.613428 CTGGGTTGTTTACTTTCTGATATATGA 57.387 33.333 0.00 0.00 0.00 2.15
220 221 9.613428 TCTGGGTTGTTTACTTTCTGATATATG 57.387 33.333 0.00 0.00 0.00 1.78
223 224 8.960591 CATTCTGGGTTGTTTACTTTCTGATAT 58.039 33.333 0.00 0.00 0.00 1.63
224 225 8.160765 TCATTCTGGGTTGTTTACTTTCTGATA 58.839 33.333 0.00 0.00 0.00 2.15
225 226 7.004086 TCATTCTGGGTTGTTTACTTTCTGAT 58.996 34.615 0.00 0.00 0.00 2.90
226 227 6.361433 TCATTCTGGGTTGTTTACTTTCTGA 58.639 36.000 0.00 0.00 0.00 3.27
227 228 6.633500 TCATTCTGGGTTGTTTACTTTCTG 57.367 37.500 0.00 0.00 0.00 3.02
228 229 7.654022 TTTCATTCTGGGTTGTTTACTTTCT 57.346 32.000 0.00 0.00 0.00 2.52
229 230 8.710835 TTTTTCATTCTGGGTTGTTTACTTTC 57.289 30.769 0.00 0.00 0.00 2.62
253 254 9.918630 CCTCAATTCAACAAATAGTGAAGATTT 57.081 29.630 0.00 0.00 0.00 2.17
254 255 8.526147 CCCTCAATTCAACAAATAGTGAAGATT 58.474 33.333 0.00 0.00 0.00 2.40
255 256 7.671398 ACCCTCAATTCAACAAATAGTGAAGAT 59.329 33.333 0.00 0.00 0.00 2.40
256 257 7.004086 ACCCTCAATTCAACAAATAGTGAAGA 58.996 34.615 0.00 0.00 0.00 2.87
257 258 7.219484 ACCCTCAATTCAACAAATAGTGAAG 57.781 36.000 0.00 0.00 0.00 3.02
258 259 7.595819 AACCCTCAATTCAACAAATAGTGAA 57.404 32.000 0.00 0.00 0.00 3.18
259 260 7.432869 CAAACCCTCAATTCAACAAATAGTGA 58.567 34.615 0.00 0.00 0.00 3.41
260 261 6.646240 CCAAACCCTCAATTCAACAAATAGTG 59.354 38.462 0.00 0.00 0.00 2.74
261 262 6.553100 TCCAAACCCTCAATTCAACAAATAGT 59.447 34.615 0.00 0.00 0.00 2.12
262 263 6.991938 TCCAAACCCTCAATTCAACAAATAG 58.008 36.000 0.00 0.00 0.00 1.73
263 264 6.985653 TCCAAACCCTCAATTCAACAAATA 57.014 33.333 0.00 0.00 0.00 1.40
264 265 5.885449 TCCAAACCCTCAATTCAACAAAT 57.115 34.783 0.00 0.00 0.00 2.32
280 281 6.312399 TGTCACACTCATTACAATCCAAAC 57.688 37.500 0.00 0.00 0.00 2.93
283 284 5.412286 CACATGTCACACTCATTACAATCCA 59.588 40.000 0.00 0.00 0.00 3.41
492 493 5.867903 ATGTGTTGGGTCATGAAGAAAAA 57.132 34.783 0.00 0.00 0.00 1.94
498 499 1.617850 GGCAATGTGTTGGGTCATGAA 59.382 47.619 0.00 0.00 35.83 2.57
511 512 3.688694 TTTACTACTGGACGGCAATGT 57.311 42.857 0.00 0.00 0.00 2.71
558 559 6.569179 ACTAATTTTAGCGGTTTCATGTGT 57.431 33.333 0.00 0.00 34.09 3.72
620 650 6.072286 ACGTACTTAGCACTTTTGTAGCTAGA 60.072 38.462 0.00 0.00 38.88 2.43
627 662 6.199719 GTCTGTTACGTACTTAGCACTTTTGT 59.800 38.462 0.00 0.00 0.00 2.83
641 676 9.177608 AGTGGTTATATGTTAGTCTGTTACGTA 57.822 33.333 0.00 0.00 0.00 3.57
644 679 8.255905 ACCAGTGGTTATATGTTAGTCTGTTAC 58.744 37.037 9.70 0.00 27.29 2.50
645 680 8.370266 ACCAGTGGTTATATGTTAGTCTGTTA 57.630 34.615 9.70 0.00 27.29 2.41
646 681 7.038587 TGACCAGTGGTTATATGTTAGTCTGTT 60.039 37.037 17.93 0.00 35.25 3.16
649 684 7.490657 TTGACCAGTGGTTATATGTTAGTCT 57.509 36.000 17.93 0.00 35.25 3.24
650 685 7.441458 GGATTGACCAGTGGTTATATGTTAGTC 59.559 40.741 17.93 0.00 35.25 2.59
652 687 7.279615 TGGATTGACCAGTGGTTATATGTTAG 58.720 38.462 17.93 0.00 44.64 2.34
653 688 7.201702 TGGATTGACCAGTGGTTATATGTTA 57.798 36.000 17.93 0.00 44.64 2.41
655 690 5.708736 TGGATTGACCAGTGGTTATATGT 57.291 39.130 17.93 0.00 44.64 2.29
668 703 5.041191 ACTCTTATGGATGTGGATTGACC 57.959 43.478 0.00 0.00 39.54 4.02
669 704 6.226787 CCTACTCTTATGGATGTGGATTGAC 58.773 44.000 0.00 0.00 0.00 3.18
670 705 5.307976 CCCTACTCTTATGGATGTGGATTGA 59.692 44.000 0.00 0.00 0.00 2.57
671 706 5.307976 TCCCTACTCTTATGGATGTGGATTG 59.692 44.000 0.00 0.00 0.00 2.67
727 1042 0.237498 GTGACCCGCTGTTTACTTGC 59.763 55.000 0.00 0.00 0.00 4.01
728 1043 1.531149 CTGTGACCCGCTGTTTACTTG 59.469 52.381 0.00 0.00 0.00 3.16
979 1329 2.819984 GATGCGGTCTGGGAAGGCAA 62.820 60.000 0.00 0.00 37.15 4.52
982 1332 1.987807 ATGGATGCGGTCTGGGAAGG 61.988 60.000 0.00 0.00 0.00 3.46
985 1335 2.745308 CCATGGATGCGGTCTGGGA 61.745 63.158 5.56 0.00 0.00 4.37
987 1337 2.903855 GCCATGGATGCGGTCTGG 60.904 66.667 18.40 0.00 0.00 3.86
1018 1368 0.820891 AACACCAGCAGGAGCACAAG 60.821 55.000 0.35 0.00 45.49 3.16
1020 1370 1.227943 GAACACCAGCAGGAGCACA 60.228 57.895 0.35 0.00 45.49 4.57
1021 1371 2.320587 CGAACACCAGCAGGAGCAC 61.321 63.158 0.35 0.00 45.49 4.40
1657 2007 2.264480 CGTGTTCCCGATGCTGGA 59.736 61.111 0.00 0.00 0.00 3.86
1802 2152 0.888619 TGAGAACCACGAATCGAGCT 59.111 50.000 10.55 0.00 0.00 4.09
1991 2345 6.712547 GCTTGGGTTAAGATTCATGCTACTAT 59.287 38.462 0.00 0.00 38.76 2.12
2037 2391 3.053245 TCCAAAGTTCAAGGAACAGGGAA 60.053 43.478 11.28 0.00 44.11 3.97
2094 2448 4.415881 TGTGATCCAAGTACAACACTGT 57.584 40.909 0.00 0.00 37.63 3.55
2095 2449 5.348418 CTTGTGATCCAAGTACAACACTG 57.652 43.478 13.02 0.00 44.64 3.66
2123 2479 2.423538 CACCAATGCTAAGCACCTAACC 59.576 50.000 0.00 0.00 43.04 2.85
2208 2564 6.832384 AGCAAACAGACATATCCAGATTCAAT 59.168 34.615 0.00 0.00 0.00 2.57
2220 2576 4.574674 ATCCTCCAAGCAAACAGACATA 57.425 40.909 0.00 0.00 0.00 2.29
2303 2659 0.787787 TTTCCGAGTCGCGACAAATG 59.212 50.000 37.85 23.64 44.57 2.32
2418 2774 1.459592 CTTGTAAACCCGCTCACGAAG 59.540 52.381 0.00 0.00 43.93 3.79
2423 2779 2.037902 TGACATCTTGTAAACCCGCTCA 59.962 45.455 0.00 0.00 0.00 4.26
2425 2781 2.851263 TGACATCTTGTAAACCCGCT 57.149 45.000 0.00 0.00 0.00 5.52
2427 2783 3.009723 AGCATGACATCTTGTAAACCCG 58.990 45.455 0.00 0.00 0.00 5.28
2541 2899 2.095161 AGTCTAGCACGGAAGAAACGAG 60.095 50.000 0.00 0.00 34.93 4.18
2590 2948 7.696872 GCATTGCATAAAGTCATATCAGCTATG 59.303 37.037 3.15 0.00 38.91 2.23
2591 2949 7.413767 CGCATTGCATAAAGTCATATCAGCTAT 60.414 37.037 9.69 0.00 0.00 2.97
2592 2950 6.128472 CGCATTGCATAAAGTCATATCAGCTA 60.128 38.462 9.69 0.00 0.00 3.32
2593 2951 5.334646 CGCATTGCATAAAGTCATATCAGCT 60.335 40.000 9.69 0.00 0.00 4.24
2597 2955 6.233430 AGTCGCATTGCATAAAGTCATATC 57.767 37.500 9.69 0.00 0.00 1.63
2688 3047 3.788227 AGTTCCAAACTACCTCATGCA 57.212 42.857 0.00 0.00 40.69 3.96
2695 3055 7.330946 GGCAATTATTCAAAGTTCCAAACTACC 59.669 37.037 0.00 0.00 41.91 3.18
2736 3096 6.364976 GGGCACACAAGTCAATTACAATTTAC 59.635 38.462 0.00 0.00 0.00 2.01
2737 3097 6.266558 AGGGCACACAAGTCAATTACAATTTA 59.733 34.615 0.00 0.00 0.00 1.40
2738 3098 5.070313 AGGGCACACAAGTCAATTACAATTT 59.930 36.000 0.00 0.00 0.00 1.82
2739 3099 4.588528 AGGGCACACAAGTCAATTACAATT 59.411 37.500 0.00 0.00 0.00 2.32
2740 3100 4.022068 CAGGGCACACAAGTCAATTACAAT 60.022 41.667 0.00 0.00 0.00 2.71
2741 3101 3.317711 CAGGGCACACAAGTCAATTACAA 59.682 43.478 0.00 0.00 0.00 2.41
2742 3102 2.884012 CAGGGCACACAAGTCAATTACA 59.116 45.455 0.00 0.00 0.00 2.41
2761 3121 4.418392 GCACTGATCCTGCAAAATTACAG 58.582 43.478 7.44 0.00 34.56 2.74
2853 3213 0.248621 GACACACTTGCCAACAGTGC 60.249 55.000 4.83 0.00 37.08 4.40
2923 3283 1.770658 TCCACTATGCCATCCCAAGAG 59.229 52.381 0.00 0.00 0.00 2.85
3049 3409 1.543429 CCCAACACTGAAGGGACAGAC 60.543 57.143 0.00 0.00 45.80 3.51
3091 3451 4.020396 AGTGCATTCAGACTGAGATCAAGT 60.020 41.667 5.10 0.00 0.00 3.16
3121 3481 5.050159 CAGAATAAAAACAGGCAAAACAGGC 60.050 40.000 0.00 0.00 0.00 4.85
3238 3598 6.678568 ATCTTGAGAGAAGGTTGAGAAGAA 57.321 37.500 0.00 0.00 35.07 2.52
3397 3757 9.770097 TTGTGAGATAGATCAAGATATTCCAAC 57.230 33.333 0.00 0.00 0.00 3.77
3427 3787 3.507162 TCAGGAATTCTGCCACTGAAA 57.493 42.857 5.23 0.00 43.06 2.69
3550 3910 7.728083 TCTGGGAAAATTAGAAAGTCATTTCCA 59.272 33.333 14.81 0.00 45.01 3.53
3597 3957 2.690778 GCAAGTCCACCATCGCCAC 61.691 63.158 0.00 0.00 0.00 5.01
3700 4060 3.216800 TGCCAATGCTATGAAGATCACC 58.783 45.455 0.00 0.00 38.71 4.02
3714 4074 3.317149 CCTCACCACATAGATTGCCAATG 59.683 47.826 0.00 0.00 0.00 2.82
3760 4120 5.219739 AGAGTTATCTGGCCTCTAAATCCA 58.780 41.667 3.32 0.00 33.90 3.41
3778 4138 4.405358 CCCAGCTTTAGATCTCTGAGAGTT 59.595 45.833 13.50 0.25 0.00 3.01
3856 4216 7.939039 AGATGGTCATTTGAGAAACTTGTCTTA 59.061 33.333 0.00 0.00 0.00 2.10
4000 4360 2.508887 GCTGCAGCTGAGGTCTCG 60.509 66.667 31.33 0.00 38.21 4.04
4339 4699 9.850628 CATGAAATTATATTCGGATGCTTGATT 57.149 29.630 0.00 0.00 31.80 2.57
4481 4842 7.818930 GGAATAATTTCAAAGGTTGCAGATTCA 59.181 33.333 0.00 0.00 33.23 2.57
4551 4914 3.261897 ACAAATTCCGAGGTGATGAGTCT 59.738 43.478 0.00 0.00 0.00 3.24
4552 4915 3.600388 ACAAATTCCGAGGTGATGAGTC 58.400 45.455 0.00 0.00 0.00 3.36
4553 4916 3.703001 ACAAATTCCGAGGTGATGAGT 57.297 42.857 0.00 0.00 0.00 3.41
4556 4919 3.764885 GGAACAAATTCCGAGGTGATG 57.235 47.619 0.00 0.00 45.12 3.07
4569 4932 2.378038 ACAAAGAGCAGCAGGAACAAA 58.622 42.857 0.00 0.00 0.00 2.83
4801 5167 0.322816 GCTTCAGGTTGCCATGAGGA 60.323 55.000 0.00 0.00 36.89 3.71
4822 5188 6.662234 CAGGACCGGTCAGGAATATATTAGTA 59.338 42.308 34.40 0.00 45.00 1.82
4915 5281 5.474876 CCCCAATGCTCCTAAATTCAGTATC 59.525 44.000 0.00 0.00 0.00 2.24
5017 5383 0.517316 GCGTCAACATCTCCAACACC 59.483 55.000 0.00 0.00 0.00 4.16
5020 5386 0.669318 TCCGCGTCAACATCTCCAAC 60.669 55.000 4.92 0.00 0.00 3.77
5021 5387 0.034198 TTCCGCGTCAACATCTCCAA 59.966 50.000 4.92 0.00 0.00 3.53
5083 5449 0.178973 TCTGAACCCAGTCCGTCAGA 60.179 55.000 0.00 0.00 41.16 3.27
5343 5710 4.671549 GCACCACGACGACGACGA 62.672 66.667 25.15 0.00 42.66 4.20
5344 5711 4.967730 TGCACCACGACGACGACG 62.968 66.667 17.60 17.60 42.66 5.12
5345 5712 2.430244 ATGCACCACGACGACGAC 60.430 61.111 15.32 0.00 42.66 4.34
5516 5883 1.076485 AGGCAACATGCTGGGGATC 60.076 57.895 2.00 0.00 44.28 3.36
5518 5885 2.036098 CAGGCAACATGCTGGGGA 59.964 61.111 2.00 0.00 44.28 4.81
5559 5926 5.290643 CCGATTCTGCACAAAAAGAAAACAA 59.709 36.000 0.00 0.00 36.09 2.83
5560 5927 4.803088 CCGATTCTGCACAAAAAGAAAACA 59.197 37.500 0.00 0.00 36.09 2.83
5561 5928 4.209080 CCCGATTCTGCACAAAAAGAAAAC 59.791 41.667 0.00 0.00 36.09 2.43
5584 5951 3.931468 CACTTCACAGATCATCACAGGAC 59.069 47.826 0.00 0.00 0.00 3.85
5649 6016 5.180868 AGAAAGAGAAGATCAACACATGCAC 59.819 40.000 0.00 0.00 0.00 4.57
5945 6344 1.153549 GGCAGTTCCGAGCACCTAG 60.154 63.158 0.00 0.00 0.00 3.02
5972 6377 2.262187 GATTTCACCGTGCGACGACG 62.262 60.000 2.12 2.12 46.05 5.12
6000 6405 3.868200 CTCACAACCCCCACCAGCC 62.868 68.421 0.00 0.00 0.00 4.85
6001 6406 2.282462 CTCACAACCCCCACCAGC 60.282 66.667 0.00 0.00 0.00 4.85
6002 6407 2.006805 AACCTCACAACCCCCACCAG 62.007 60.000 0.00 0.00 0.00 4.00
6003 6408 1.585651 AAACCTCACAACCCCCACCA 61.586 55.000 0.00 0.00 0.00 4.17
6041 6449 3.092301 CAAGGACCAAAATCTTCCTCCC 58.908 50.000 0.00 0.00 38.93 4.30
6064 6472 1.617947 ATCACCTCCGCTCCTCCAAC 61.618 60.000 0.00 0.00 0.00 3.77
6150 6574 3.124921 CGTTCCGTCCCATGTGGC 61.125 66.667 0.00 0.00 0.00 5.01
6161 6591 4.214383 CTGCATCTGCGCGTTCCG 62.214 66.667 8.43 0.00 45.83 4.30
6182 6612 3.017323 CGATCAGCCAATCACCGC 58.983 61.111 0.00 0.00 0.00 5.68
6183 6613 3.017323 GCGATCAGCCAATCACCG 58.983 61.111 0.00 0.00 40.81 4.94
6234 6664 2.629210 CGAACCTTCGCACGCAAA 59.371 55.556 0.00 0.00 44.26 3.68
6257 6687 5.392380 GGACAGAGCAATCAATCAAATCGTT 60.392 40.000 0.00 0.00 0.00 3.85
6258 6688 4.095483 GGACAGAGCAATCAATCAAATCGT 59.905 41.667 0.00 0.00 0.00 3.73
6272 6702 2.672908 CCCTGCATGGACAGAGCA 59.327 61.111 0.97 2.90 40.25 4.26
6281 6711 1.076559 TGATCTTGGCCCCTGCATG 60.077 57.895 0.00 0.00 40.13 4.06
6357 6788 2.464459 CGGCAGGAATTCACTCCGC 61.464 63.158 15.23 6.84 40.75 5.54
6376 6807 1.087771 GCGTCATTTACTCGGGTGGG 61.088 60.000 0.00 0.00 0.00 4.61
6451 6884 1.512734 GTGGTACGTACGTGCTCCG 60.513 63.158 30.65 0.60 44.03 4.63
6452 6885 1.153958 GGTGGTACGTACGTGCTCC 60.154 63.158 30.65 27.03 0.00 4.70
6453 6886 0.730494 GTGGTGGTACGTACGTGCTC 60.730 60.000 30.65 23.40 0.00 4.26
6454 6887 1.286880 GTGGTGGTACGTACGTGCT 59.713 57.895 30.65 9.17 0.00 4.40
6455 6888 1.734117 GGTGGTGGTACGTACGTGC 60.734 63.158 30.25 27.93 0.00 5.34
6456 6889 0.031857 TTGGTGGTGGTACGTACGTG 59.968 55.000 30.25 0.00 0.00 4.49
6457 6890 0.749649 TTTGGTGGTGGTACGTACGT 59.250 50.000 25.98 25.98 0.00 3.57
6458 6891 1.139163 GTTTGGTGGTGGTACGTACG 58.861 55.000 18.98 15.01 0.00 3.67
6459 6892 1.511850 GGTTTGGTGGTGGTACGTAC 58.488 55.000 17.56 17.56 0.00 3.67
6460 6893 0.396060 GGGTTTGGTGGTGGTACGTA 59.604 55.000 0.00 0.00 0.00 3.57
6461 6894 1.148949 GGGTTTGGTGGTGGTACGT 59.851 57.895 0.00 0.00 0.00 3.57
6462 6895 1.148723 TGGGTTTGGTGGTGGTACG 59.851 57.895 0.00 0.00 0.00 3.67
6463 6896 0.824595 GGTGGGTTTGGTGGTGGTAC 60.825 60.000 0.00 0.00 0.00 3.34
6464 6897 0.994591 AGGTGGGTTTGGTGGTGGTA 60.995 55.000 0.00 0.00 0.00 3.25
6465 6898 2.280753 GGTGGGTTTGGTGGTGGT 59.719 61.111 0.00 0.00 0.00 4.16
6466 6899 1.530655 GAGGTGGGTTTGGTGGTGG 60.531 63.158 0.00 0.00 0.00 4.61
6467 6900 1.530655 GGAGGTGGGTTTGGTGGTG 60.531 63.158 0.00 0.00 0.00 4.17
6468 6901 2.931921 GGAGGTGGGTTTGGTGGT 59.068 61.111 0.00 0.00 0.00 4.16
6469 6902 2.282180 CGGAGGTGGGTTTGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
6470 6903 2.983592 GCGGAGGTGGGTTTGGTG 60.984 66.667 0.00 0.00 0.00 4.17
6471 6904 3.175710 AGCGGAGGTGGGTTTGGT 61.176 61.111 0.00 0.00 36.17 3.67
6480 6913 4.790962 CATGGCAGCAGCGGAGGT 62.791 66.667 0.00 0.00 43.41 3.85
6485 6918 4.266070 GATGGCATGGCAGCAGCG 62.266 66.667 30.07 0.00 43.41 5.18
6486 6919 2.971095 TAGGATGGCATGGCAGCAGC 62.971 60.000 34.27 20.40 41.10 5.25
6487 6920 0.466739 TTAGGATGGCATGGCAGCAG 60.467 55.000 34.27 0.00 35.83 4.24
6488 6921 0.186630 ATTAGGATGGCATGGCAGCA 59.813 50.000 34.27 17.98 35.83 4.41
6489 6922 0.886563 GATTAGGATGGCATGGCAGC 59.113 55.000 27.66 27.66 0.00 5.25
6490 6923 2.160205 CAGATTAGGATGGCATGGCAG 58.840 52.381 27.02 6.54 0.00 4.85
6491 6924 1.820483 GCAGATTAGGATGGCATGGCA 60.820 52.381 25.52 25.52 0.00 4.92
6492 6925 0.886563 GCAGATTAGGATGGCATGGC 59.113 55.000 13.29 13.29 0.00 4.40
6493 6926 1.202964 TGGCAGATTAGGATGGCATGG 60.203 52.381 3.81 0.00 45.82 3.66
6494 6927 2.281539 TGGCAGATTAGGATGGCATG 57.718 50.000 3.81 0.00 45.82 4.06
6497 6930 1.271656 GCAATGGCAGATTAGGATGGC 59.728 52.381 0.00 0.00 42.01 4.40
6498 6931 1.891150 GGCAATGGCAGATTAGGATGG 59.109 52.381 0.58 0.00 43.71 3.51
6499 6932 1.538512 CGGCAATGGCAGATTAGGATG 59.461 52.381 7.75 0.00 43.71 3.51
6500 6933 1.421268 TCGGCAATGGCAGATTAGGAT 59.579 47.619 7.75 0.00 39.36 3.24
6501 6934 0.836606 TCGGCAATGGCAGATTAGGA 59.163 50.000 7.75 0.00 39.36 2.94
6502 6935 1.202687 TCTCGGCAATGGCAGATTAGG 60.203 52.381 7.75 0.00 43.29 2.69
6503 6936 2.141517 CTCTCGGCAATGGCAGATTAG 58.858 52.381 7.75 0.00 43.29 1.73
6504 6937 1.486310 ACTCTCGGCAATGGCAGATTA 59.514 47.619 7.75 0.00 43.29 1.75
6505 6938 0.254178 ACTCTCGGCAATGGCAGATT 59.746 50.000 7.75 1.00 43.29 2.40
6506 6939 1.069823 CTACTCTCGGCAATGGCAGAT 59.930 52.381 7.75 3.08 43.29 2.90
6507 6940 0.461548 CTACTCTCGGCAATGGCAGA 59.538 55.000 7.75 8.02 42.05 4.26
6508 6941 0.461548 TCTACTCTCGGCAATGGCAG 59.538 55.000 7.75 3.90 43.71 4.85
6509 6942 0.461548 CTCTACTCTCGGCAATGGCA 59.538 55.000 7.75 0.00 43.71 4.92
6510 6943 0.878086 GCTCTACTCTCGGCAATGGC 60.878 60.000 0.00 0.00 40.13 4.40
6511 6944 0.596083 CGCTCTACTCTCGGCAATGG 60.596 60.000 0.00 0.00 0.00 3.16
6512 6945 1.211818 GCGCTCTACTCTCGGCAATG 61.212 60.000 0.00 0.00 0.00 2.82
6513 6946 1.066587 GCGCTCTACTCTCGGCAAT 59.933 57.895 0.00 0.00 0.00 3.56
6514 6947 2.490217 GCGCTCTACTCTCGGCAA 59.510 61.111 0.00 0.00 0.00 4.52
6515 6948 3.877357 CGCGCTCTACTCTCGGCA 61.877 66.667 5.56 0.00 0.00 5.69
6516 6949 4.615834 CCGCGCTCTACTCTCGGC 62.616 72.222 5.56 0.00 33.36 5.54
6517 6950 3.955101 CCCGCGCTCTACTCTCGG 61.955 72.222 5.56 0.00 39.79 4.63
6518 6951 4.615834 GCCCGCGCTCTACTCTCG 62.616 72.222 5.56 0.00 0.00 4.04
6519 6952 2.945398 CTTGCCCGCGCTCTACTCTC 62.945 65.000 5.56 0.00 35.36 3.20
6520 6953 3.068691 TTGCCCGCGCTCTACTCT 61.069 61.111 5.56 0.00 35.36 3.24
6521 6954 2.583593 CTTGCCCGCGCTCTACTC 60.584 66.667 5.56 0.00 35.36 2.59
6522 6955 4.148825 CCTTGCCCGCGCTCTACT 62.149 66.667 5.56 0.00 35.36 2.57
6532 6965 4.280019 ACCGTCCAACCCTTGCCC 62.280 66.667 0.00 0.00 0.00 5.36
6533 6966 2.983592 CACCGTCCAACCCTTGCC 60.984 66.667 0.00 0.00 0.00 4.52
6534 6967 2.203294 ACACCGTCCAACCCTTGC 60.203 61.111 0.00 0.00 0.00 4.01
6535 6968 2.551912 GCACACCGTCCAACCCTTG 61.552 63.158 0.00 0.00 0.00 3.61
6536 6969 2.203294 GCACACCGTCCAACCCTT 60.203 61.111 0.00 0.00 0.00 3.95
6537 6970 4.265056 GGCACACCGTCCAACCCT 62.265 66.667 0.00 0.00 0.00 4.34
6540 6973 4.265056 AGGGGCACACCGTCCAAC 62.265 66.667 0.00 0.00 43.46 3.77
6541 6974 3.948719 GAGGGGCACACCGTCCAA 61.949 66.667 0.00 0.00 46.16 3.53
6549 6982 4.414956 ATCGGAGGGAGGGGCACA 62.415 66.667 0.00 0.00 0.00 4.57
6550 6983 3.551407 GATCGGAGGGAGGGGCAC 61.551 72.222 0.00 0.00 0.00 5.01
6551 6984 4.880426 GGATCGGAGGGAGGGGCA 62.880 72.222 0.00 0.00 0.00 5.36
6553 6986 4.541648 ACGGATCGGAGGGAGGGG 62.542 72.222 7.35 0.00 0.00 4.79
6554 6987 2.913060 GACGGATCGGAGGGAGGG 60.913 72.222 7.35 0.00 0.00 4.30
6555 6988 3.288290 CGACGGATCGGAGGGAGG 61.288 72.222 7.35 0.00 44.99 4.30
6584 7017 3.423154 CTTGGCTGACGAACCCGC 61.423 66.667 0.00 0.00 39.95 6.13
6585 7018 3.423154 GCTTGGCTGACGAACCCG 61.423 66.667 0.00 0.00 42.50 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.