Multiple sequence alignment - TraesCS2B01G185000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G185000 chr2B 100.000 3714 0 0 1 3714 159972187 159968474 0.000000e+00 6859.0
1 TraesCS2B01G185000 chr2B 89.583 96 9 1 294 388 147482263 147482358 1.810000e-23 121.0
2 TraesCS2B01G185000 chr2B 94.444 54 0 2 3664 3714 659067333 659067280 3.070000e-11 80.5
3 TraesCS2B01G185000 chr2A 93.546 2789 146 19 385 3164 107183518 107180755 0.000000e+00 4122.0
4 TraesCS2B01G185000 chr2A 93.750 272 15 2 3165 3434 107180547 107180276 1.240000e-109 407.0
5 TraesCS2B01G185000 chr2A 92.891 211 15 0 2 212 2929474 2929684 1.300000e-79 307.0
6 TraesCS2B01G185000 chr2A 89.143 175 16 3 119 292 186413557 186413729 8.080000e-52 215.0
7 TraesCS2B01G185000 chr2A 91.781 146 6 1 3429 3574 107179988 107179849 8.140000e-47 198.0
8 TraesCS2B01G185000 chr2A 92.308 52 2 2 3664 3714 79496765 79496815 5.150000e-09 73.1
9 TraesCS2B01G185000 chr2D 93.769 2680 112 18 385 3035 110843974 110841321 0.000000e+00 3973.0
10 TraesCS2B01G185000 chr2D 95.506 267 11 1 3165 3430 110840871 110840605 3.430000e-115 425.0
11 TraesCS2B01G185000 chr2D 93.985 133 6 1 3034 3164 110841197 110841065 2.260000e-47 200.0
12 TraesCS2B01G185000 chr2D 87.248 149 7 7 487 631 110844011 110843871 3.840000e-35 159.0
13 TraesCS2B01G185000 chr2D 92.771 83 6 0 297 379 390705512 390705430 1.810000e-23 121.0
14 TraesCS2B01G185000 chr5D 83.973 1772 223 31 994 2714 549548328 549546567 0.000000e+00 1642.0
15 TraesCS2B01G185000 chr5D 86.413 1023 108 15 994 1993 549430243 549429229 0.000000e+00 1090.0
16 TraesCS2B01G185000 chr5D 84.820 863 107 13 1160 2000 549262020 549261160 0.000000e+00 846.0
17 TraesCS2B01G185000 chr5D 83.778 863 116 12 1160 2000 549229685 549228825 0.000000e+00 797.0
18 TraesCS2B01G185000 chr5D 84.000 650 102 2 2056 2704 549429143 549428495 1.130000e-174 623.0
19 TraesCS2B01G185000 chr5B 86.845 973 108 10 1038 1992 701051834 701050864 0.000000e+00 1070.0
20 TraesCS2B01G185000 chr5B 84.357 863 111 13 1160 2000 700856493 700855633 0.000000e+00 824.0
21 TraesCS2B01G185000 chr5B 85.196 662 94 4 2056 2715 701050772 701050113 0.000000e+00 676.0
22 TraesCS2B01G185000 chr5B 91.860 86 7 0 294 379 626781108 626781023 1.810000e-23 121.0
23 TraesCS2B01G185000 chr7D 83.681 864 105 21 1160 1989 162823648 162822787 0.000000e+00 782.0
24 TraesCS2B01G185000 chr7D 77.937 630 131 3 2068 2696 524306013 524306635 1.620000e-103 387.0
25 TraesCS2B01G185000 chr7D 88.581 289 21 8 490 773 460033511 460033230 1.280000e-89 340.0
26 TraesCS2B01G185000 chr7D 87.156 109 12 2 189 295 220635598 220635490 5.040000e-24 122.0
27 TraesCS2B01G185000 chr7D 86.765 68 9 0 784 851 517503420 517503353 3.980000e-10 76.8
28 TraesCS2B01G185000 chr7D 95.745 47 1 1 3669 3714 531439022 531438976 1.430000e-09 75.0
29 TraesCS2B01G185000 chrUn 81.537 807 137 8 1192 1989 75777180 75777983 0.000000e+00 654.0
30 TraesCS2B01G185000 chrUn 81.537 807 137 8 1192 1989 228925104 228924301 0.000000e+00 654.0
31 TraesCS2B01G185000 chrUn 80.671 626 117 4 2057 2680 75745840 75746463 2.010000e-132 483.0
32 TraesCS2B01G185000 chrUn 80.306 589 112 4 2094 2680 228922465 228921879 3.400000e-120 442.0
33 TraesCS2B01G185000 chrUn 80.306 589 112 4 2094 2680 325066151 325065565 3.400000e-120 442.0
34 TraesCS2B01G185000 chrUn 78.185 628 127 8 2071 2696 76990009 76989390 3.480000e-105 392.0
35 TraesCS2B01G185000 chrUn 78.025 628 128 8 2071 2696 394209868 394209249 1.620000e-103 387.0
36 TraesCS2B01G185000 chrUn 91.061 179 13 3 119 296 79579961 79579785 4.790000e-59 239.0
37 TraesCS2B01G185000 chrUn 86.765 68 9 0 784 851 97147196 97147263 3.980000e-10 76.8
38 TraesCS2B01G185000 chr3D 78.717 639 110 17 2068 2696 426048499 426049121 1.610000e-108 403.0
39 TraesCS2B01G185000 chr3D 98.413 63 0 1 3 65 689612 689673 3.920000e-20 110.0
40 TraesCS2B01G185000 chr3D 85.507 69 10 0 783 851 1899222 1899290 5.150000e-09 73.1
41 TraesCS2B01G185000 chr6B 78.344 628 126 8 2071 2696 76420676 76420057 7.470000e-107 398.0
42 TraesCS2B01G185000 chr6B 86.000 50 7 0 802 851 150776212 150776163 2.000000e-03 54.7
43 TraesCS2B01G185000 chr3A 90.071 282 21 5 2 278 153350166 153350445 3.530000e-95 359.0
44 TraesCS2B01G185000 chr3A 91.509 212 18 0 1 212 165097823 165098034 3.630000e-75 292.0
45 TraesCS2B01G185000 chr3A 94.643 56 1 2 66 120 514170151 514170097 6.610000e-13 86.1
46 TraesCS2B01G185000 chr1D 91.469 211 18 0 2 212 495227114 495226904 1.300000e-74 291.0
47 TraesCS2B01G185000 chr1D 88.288 111 10 2 186 295 493735433 493735541 3.010000e-26 130.0
48 TraesCS2B01G185000 chr1D 91.860 86 7 0 294 379 77335656 77335571 1.810000e-23 121.0
49 TraesCS2B01G185000 chr1D 96.000 50 2 0 64 113 366680758 366680807 8.550000e-12 82.4
50 TraesCS2B01G185000 chr5A 90.094 212 21 0 1 212 678194300 678194089 3.650000e-70 276.0
51 TraesCS2B01G185000 chr3B 90.094 212 21 0 1 212 51763119 51763330 3.650000e-70 276.0
52 TraesCS2B01G185000 chr3B 86.111 108 14 1 189 295 172520486 172520593 8.430000e-22 115.0
53 TraesCS2B01G185000 chr4A 89.583 192 19 1 22 212 42041323 42041514 3.710000e-60 243.0
54 TraesCS2B01G185000 chr4A 92.793 111 6 2 186 295 540918839 540918948 3.840000e-35 159.0
55 TraesCS2B01G185000 chr4A 95.349 86 4 0 294 379 710416353 710416268 1.800000e-28 137.0
56 TraesCS2B01G185000 chr4A 93.023 86 6 0 294 379 438615434 438615519 3.890000e-25 126.0
57 TraesCS2B01G185000 chr6D 87.778 180 17 4 592 770 460305402 460305227 4.860000e-49 206.0
58 TraesCS2B01G185000 chr6D 88.889 108 11 1 188 295 303063300 303063194 8.370000e-27 132.0
59 TraesCS2B01G185000 chr6D 91.860 86 7 0 294 379 471333886 471333801 1.810000e-23 121.0
60 TraesCS2B01G185000 chr6D 94.118 51 1 2 3666 3714 7293775 7293825 3.980000e-10 76.8
61 TraesCS2B01G185000 chr6D 96.970 33 0 1 3229 3261 20281322 20281291 2.000000e-03 54.7
62 TraesCS2B01G185000 chr6A 86.517 178 19 2 592 768 606334251 606334078 1.360000e-44 191.0
63 TraesCS2B01G185000 chr7A 91.398 93 8 0 297 389 418669494 418669402 1.080000e-25 128.0
64 TraesCS2B01G185000 chr7B 87.850 107 9 3 189 294 69822433 69822330 5.040000e-24 122.0
65 TraesCS2B01G185000 chr7B 92.308 52 3 1 3663 3713 130864021 130863970 5.150000e-09 73.1
66 TraesCS2B01G185000 chr1B 89.109 101 7 4 294 392 629065900 629065802 5.040000e-24 122.0
67 TraesCS2B01G185000 chr1B 92.453 53 2 2 3664 3714 428074676 428074624 1.430000e-09 75.0
68 TraesCS2B01G185000 chr1B 94.000 50 1 2 3662 3710 544492571 544492619 1.430000e-09 75.0
69 TraesCS2B01G185000 chr1B 85.714 70 10 0 783 852 642765743 642765812 1.430000e-09 75.0
70 TraesCS2B01G185000 chr4D 96.875 64 2 0 2 65 494042454 494042391 1.410000e-19 108.0
71 TraesCS2B01G185000 chr4D 92.453 53 1 3 3664 3714 277837391 277837442 5.150000e-09 73.1
72 TraesCS2B01G185000 chr4D 93.878 49 2 1 3663 3710 470128965 470129013 5.150000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G185000 chr2B 159968474 159972187 3713 True 6859.000000 6859 100.000000 1 3714 1 chr2B.!!$R1 3713
1 TraesCS2B01G185000 chr2A 107179849 107183518 3669 True 1575.666667 4122 93.025667 385 3574 3 chr2A.!!$R1 3189
2 TraesCS2B01G185000 chr2D 110840605 110844011 3406 True 1189.250000 3973 92.627000 385 3430 4 chr2D.!!$R2 3045
3 TraesCS2B01G185000 chr5D 549546567 549548328 1761 True 1642.000000 1642 83.973000 994 2714 1 chr5D.!!$R3 1720
4 TraesCS2B01G185000 chr5D 549428495 549430243 1748 True 856.500000 1090 85.206500 994 2704 2 chr5D.!!$R4 1710
5 TraesCS2B01G185000 chr5D 549261160 549262020 860 True 846.000000 846 84.820000 1160 2000 1 chr5D.!!$R2 840
6 TraesCS2B01G185000 chr5D 549228825 549229685 860 True 797.000000 797 83.778000 1160 2000 1 chr5D.!!$R1 840
7 TraesCS2B01G185000 chr5B 701050113 701051834 1721 True 873.000000 1070 86.020500 1038 2715 2 chr5B.!!$R3 1677
8 TraesCS2B01G185000 chr5B 700855633 700856493 860 True 824.000000 824 84.357000 1160 2000 1 chr5B.!!$R2 840
9 TraesCS2B01G185000 chr7D 162822787 162823648 861 True 782.000000 782 83.681000 1160 1989 1 chr7D.!!$R1 829
10 TraesCS2B01G185000 chr7D 524306013 524306635 622 False 387.000000 387 77.937000 2068 2696 1 chr7D.!!$F1 628
11 TraesCS2B01G185000 chrUn 75777180 75777983 803 False 654.000000 654 81.537000 1192 1989 1 chrUn.!!$F2 797
12 TraesCS2B01G185000 chrUn 228921879 228925104 3225 True 548.000000 654 80.921500 1192 2680 2 chrUn.!!$R5 1488
13 TraesCS2B01G185000 chrUn 75745840 75746463 623 False 483.000000 483 80.671000 2057 2680 1 chrUn.!!$F1 623
14 TraesCS2B01G185000 chrUn 325065565 325066151 586 True 442.000000 442 80.306000 2094 2680 1 chrUn.!!$R3 586
15 TraesCS2B01G185000 chrUn 76989390 76990009 619 True 392.000000 392 78.185000 2071 2696 1 chrUn.!!$R1 625
16 TraesCS2B01G185000 chrUn 394209249 394209868 619 True 387.000000 387 78.025000 2071 2696 1 chrUn.!!$R4 625
17 TraesCS2B01G185000 chr3D 426048499 426049121 622 False 403.000000 403 78.717000 2068 2696 1 chr3D.!!$F3 628
18 TraesCS2B01G185000 chr6B 76420057 76420676 619 True 398.000000 398 78.344000 2071 2696 1 chr6B.!!$R1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.035725 ACGGGCCCTTTTGCTAGTAC 60.036 55.000 22.43 0.0 0.0 2.73 F
296 297 0.035820 CGGGCCCTTTTGCTAGTACA 60.036 55.000 22.43 0.0 0.0 2.90 F
338 339 1.134521 AGTTGTGCAACGAAGACCAGA 60.135 47.619 9.10 0.0 45.5 3.86 F
1948 2035 0.321996 GAAAGACGCTCAGGGGAAGT 59.678 55.000 0.00 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1332 1380 1.077169 TCCTGCTTCCTGAGTACCTCA 59.923 52.381 0.00 0.0 38.25 3.86 R
1730 1811 1.214062 CAGAACGCGAAGAGGAGCT 59.786 57.895 15.93 0.0 0.00 4.09 R
2214 4041 1.899814 AGTTGAGTTGCGGGATGTCTA 59.100 47.619 0.00 0.0 0.00 2.59 R
3489 5951 0.031178 AAAGCCAAACTCGCTTGCTG 59.969 50.000 0.00 0.0 45.69 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 4.181309 GCTGTACTAAGCTTGAGACACT 57.819 45.455 9.86 0.00 40.20 3.55
63 64 4.561105 GCTGTACTAAGCTTGAGACACTT 58.439 43.478 9.86 0.00 40.20 3.16
64 65 5.710984 GCTGTACTAAGCTTGAGACACTTA 58.289 41.667 9.86 0.00 40.20 2.24
65 66 5.573669 GCTGTACTAAGCTTGAGACACTTAC 59.426 44.000 9.86 2.45 40.20 2.34
66 67 6.644248 TGTACTAAGCTTGAGACACTTACA 57.356 37.500 9.86 4.71 0.00 2.41
67 68 7.046292 TGTACTAAGCTTGAGACACTTACAA 57.954 36.000 9.86 0.00 0.00 2.41
68 69 7.494211 TGTACTAAGCTTGAGACACTTACAAA 58.506 34.615 9.86 0.00 0.00 2.83
69 70 7.652105 TGTACTAAGCTTGAGACACTTACAAAG 59.348 37.037 9.86 0.00 0.00 2.77
70 71 6.583562 ACTAAGCTTGAGACACTTACAAAGT 58.416 36.000 9.86 0.00 44.06 2.66
71 72 7.048512 ACTAAGCTTGAGACACTTACAAAGTT 58.951 34.615 9.86 0.00 40.46 2.66
72 73 5.741388 AGCTTGAGACACTTACAAAGTTG 57.259 39.130 0.00 0.00 40.46 3.16
73 74 5.186198 AGCTTGAGACACTTACAAAGTTGT 58.814 37.500 1.75 1.75 40.46 3.32
74 75 6.346096 AGCTTGAGACACTTACAAAGTTGTA 58.654 36.000 0.00 0.00 40.46 2.41
75 76 6.258068 AGCTTGAGACACTTACAAAGTTGTAC 59.742 38.462 3.38 0.00 42.84 2.90
76 77 6.258068 GCTTGAGACACTTACAAAGTTGTACT 59.742 38.462 3.38 0.00 42.84 2.73
77 78 7.437267 GCTTGAGACACTTACAAAGTTGTACTA 59.563 37.037 3.38 0.00 42.84 1.82
78 79 9.309516 CTTGAGACACTTACAAAGTTGTACTAA 57.690 33.333 3.38 0.00 42.84 2.24
79 80 8.867112 TGAGACACTTACAAAGTTGTACTAAG 57.133 34.615 3.38 3.97 42.84 2.18
80 81 8.472413 TGAGACACTTACAAAGTTGTACTAAGT 58.528 33.333 3.38 4.55 42.84 2.24
81 82 9.310716 GAGACACTTACAAAGTTGTACTAAGTT 57.689 33.333 3.38 0.00 42.84 2.66
82 83 9.662947 AGACACTTACAAAGTTGTACTAAGTTT 57.337 29.630 3.38 1.01 42.84 2.66
83 84 9.698617 GACACTTACAAAGTTGTACTAAGTTTG 57.301 33.333 22.81 22.81 42.84 2.93
84 85 9.439500 ACACTTACAAAGTTGTACTAAGTTTGA 57.561 29.630 27.03 16.59 42.84 2.69
85 86 9.916397 CACTTACAAAGTTGTACTAAGTTTGAG 57.084 33.333 27.03 21.13 42.84 3.02
86 87 9.880157 ACTTACAAAGTTGTACTAAGTTTGAGA 57.120 29.630 27.03 18.37 42.84 3.27
88 89 9.656040 TTACAAAGTTGTACTAAGTTTGAGACA 57.344 29.630 27.03 15.43 42.84 3.41
89 90 7.971455 ACAAAGTTGTACTAAGTTTGAGACAC 58.029 34.615 27.03 0.00 40.96 3.67
90 91 7.822822 ACAAAGTTGTACTAAGTTTGAGACACT 59.177 33.333 27.03 13.05 40.96 3.55
91 92 8.665685 CAAAGTTGTACTAAGTTTGAGACACTT 58.334 33.333 21.39 0.00 40.96 3.16
92 93 9.880157 AAAGTTGTACTAAGTTTGAGACACTTA 57.120 29.630 8.92 0.00 35.95 2.24
103 104 8.029642 AGTTTGAGACACTTATTTTATGACGG 57.970 34.615 0.00 0.00 0.00 4.79
104 105 7.876068 AGTTTGAGACACTTATTTTATGACGGA 59.124 33.333 0.00 0.00 0.00 4.69
105 106 7.827819 TTGAGACACTTATTTTATGACGGAG 57.172 36.000 0.00 0.00 0.00 4.63
106 107 6.338146 TGAGACACTTATTTTATGACGGAGG 58.662 40.000 0.00 0.00 0.00 4.30
107 108 5.671493 AGACACTTATTTTATGACGGAGGG 58.329 41.667 0.00 0.00 0.00 4.30
108 109 5.424252 AGACACTTATTTTATGACGGAGGGA 59.576 40.000 0.00 0.00 0.00 4.20
109 110 5.671493 ACACTTATTTTATGACGGAGGGAG 58.329 41.667 0.00 0.00 0.00 4.30
110 111 5.189145 ACACTTATTTTATGACGGAGGGAGT 59.811 40.000 0.00 0.00 0.00 3.85
111 112 6.381994 ACACTTATTTTATGACGGAGGGAGTA 59.618 38.462 0.00 0.00 0.00 2.59
112 113 6.700520 CACTTATTTTATGACGGAGGGAGTAC 59.299 42.308 0.00 0.00 0.00 2.73
113 114 6.381994 ACTTATTTTATGACGGAGGGAGTACA 59.618 38.462 0.00 0.00 0.00 2.90
114 115 5.888982 ATTTTATGACGGAGGGAGTACAT 57.111 39.130 0.00 0.00 0.00 2.29
115 116 4.665833 TTTATGACGGAGGGAGTACATG 57.334 45.455 0.00 0.00 0.00 3.21
116 117 2.160721 ATGACGGAGGGAGTACATGT 57.839 50.000 2.69 2.69 0.00 3.21
117 118 1.471119 TGACGGAGGGAGTACATGTC 58.529 55.000 0.00 0.00 0.00 3.06
118 119 1.272258 TGACGGAGGGAGTACATGTCA 60.272 52.381 0.00 0.00 32.93 3.58
119 120 1.822990 GACGGAGGGAGTACATGTCAA 59.177 52.381 0.00 0.00 0.00 3.18
120 121 1.549170 ACGGAGGGAGTACATGTCAAC 59.451 52.381 0.00 0.00 0.00 3.18
121 122 1.469251 CGGAGGGAGTACATGTCAACG 60.469 57.143 0.00 0.00 0.00 4.10
122 123 1.822990 GGAGGGAGTACATGTCAACGA 59.177 52.381 0.00 0.00 0.00 3.85
123 124 2.232941 GGAGGGAGTACATGTCAACGAA 59.767 50.000 0.00 0.00 0.00 3.85
124 125 3.306502 GGAGGGAGTACATGTCAACGAAA 60.307 47.826 0.00 0.00 0.00 3.46
125 126 4.312443 GAGGGAGTACATGTCAACGAAAA 58.688 43.478 0.00 0.00 0.00 2.29
126 127 4.906618 AGGGAGTACATGTCAACGAAAAT 58.093 39.130 0.00 0.00 0.00 1.82
127 128 6.045072 AGGGAGTACATGTCAACGAAAATA 57.955 37.500 0.00 0.00 0.00 1.40
128 129 6.469410 AGGGAGTACATGTCAACGAAAATAA 58.531 36.000 0.00 0.00 0.00 1.40
129 130 6.938030 AGGGAGTACATGTCAACGAAAATAAA 59.062 34.615 0.00 0.00 0.00 1.40
130 131 7.610305 AGGGAGTACATGTCAACGAAAATAAAT 59.390 33.333 0.00 0.00 0.00 1.40
131 132 8.241367 GGGAGTACATGTCAACGAAAATAAATT 58.759 33.333 0.00 0.00 0.00 1.82
132 133 9.061610 GGAGTACATGTCAACGAAAATAAATTG 57.938 33.333 0.00 0.00 0.00 2.32
133 134 9.607285 GAGTACATGTCAACGAAAATAAATTGT 57.393 29.630 0.00 0.00 0.00 2.71
134 135 9.607285 AGTACATGTCAACGAAAATAAATTGTC 57.393 29.630 0.00 0.00 0.00 3.18
135 136 9.607285 GTACATGTCAACGAAAATAAATTGTCT 57.393 29.630 0.00 0.00 0.00 3.41
137 138 9.180678 ACATGTCAACGAAAATAAATTGTCTTC 57.819 29.630 0.00 0.00 0.00 2.87
138 139 9.179552 CATGTCAACGAAAATAAATTGTCTTCA 57.820 29.630 0.00 0.00 0.00 3.02
139 140 8.781067 TGTCAACGAAAATAAATTGTCTTCAG 57.219 30.769 0.00 0.00 0.00 3.02
140 141 7.860373 TGTCAACGAAAATAAATTGTCTTCAGG 59.140 33.333 0.00 0.00 0.00 3.86
141 142 6.861055 TCAACGAAAATAAATTGTCTTCAGGC 59.139 34.615 0.00 0.00 0.00 4.85
142 143 6.325919 ACGAAAATAAATTGTCTTCAGGCA 57.674 33.333 0.00 0.00 0.00 4.75
143 144 6.924111 ACGAAAATAAATTGTCTTCAGGCAT 58.076 32.000 0.00 0.00 0.00 4.40
144 145 7.378181 ACGAAAATAAATTGTCTTCAGGCATT 58.622 30.769 0.00 0.00 0.00 3.56
145 146 7.329226 ACGAAAATAAATTGTCTTCAGGCATTG 59.671 33.333 0.00 0.00 0.00 2.82
146 147 6.973229 AAATAAATTGTCTTCAGGCATTGC 57.027 33.333 0.00 0.00 0.00 3.56
147 148 5.927281 ATAAATTGTCTTCAGGCATTGCT 57.073 34.783 8.82 0.00 0.00 3.91
148 149 3.587797 AATTGTCTTCAGGCATTGCTG 57.412 42.857 8.82 5.29 0.00 4.41
149 150 2.275134 TTGTCTTCAGGCATTGCTGA 57.725 45.000 8.82 7.55 0.00 4.26
150 151 2.502142 TGTCTTCAGGCATTGCTGAT 57.498 45.000 8.82 0.00 0.00 2.90
151 152 2.089201 TGTCTTCAGGCATTGCTGATG 58.911 47.619 8.82 11.64 38.85 3.07
160 161 2.480224 CATTGCTGATGCCGGTTAAG 57.520 50.000 1.90 0.00 38.71 1.85
161 162 2.016318 CATTGCTGATGCCGGTTAAGA 58.984 47.619 1.90 0.00 38.71 2.10
162 163 1.448985 TTGCTGATGCCGGTTAAGAC 58.551 50.000 1.90 0.00 38.71 3.01
163 164 0.739462 TGCTGATGCCGGTTAAGACG 60.739 55.000 1.90 0.00 38.71 4.18
164 165 0.459585 GCTGATGCCGGTTAAGACGA 60.460 55.000 1.90 0.00 0.00 4.20
165 166 1.560923 CTGATGCCGGTTAAGACGAG 58.439 55.000 1.90 0.00 0.00 4.18
166 167 0.892755 TGATGCCGGTTAAGACGAGT 59.107 50.000 1.90 0.00 0.00 4.18
167 168 1.278238 GATGCCGGTTAAGACGAGTG 58.722 55.000 1.90 0.00 0.00 3.51
168 169 0.739813 ATGCCGGTTAAGACGAGTGC 60.740 55.000 1.90 0.00 0.00 4.40
169 170 1.373748 GCCGGTTAAGACGAGTGCA 60.374 57.895 1.90 0.00 0.00 4.57
170 171 0.739813 GCCGGTTAAGACGAGTGCAT 60.740 55.000 1.90 0.00 0.00 3.96
171 172 1.470285 GCCGGTTAAGACGAGTGCATA 60.470 52.381 1.90 0.00 0.00 3.14
172 173 2.883574 CCGGTTAAGACGAGTGCATAA 58.116 47.619 0.00 0.00 0.00 1.90
173 174 3.454375 CCGGTTAAGACGAGTGCATAAT 58.546 45.455 0.00 0.00 0.00 1.28
174 175 4.613944 CCGGTTAAGACGAGTGCATAATA 58.386 43.478 0.00 0.00 0.00 0.98
175 176 5.045215 CCGGTTAAGACGAGTGCATAATAA 58.955 41.667 0.00 0.00 0.00 1.40
176 177 5.521010 CCGGTTAAGACGAGTGCATAATAAA 59.479 40.000 0.00 0.00 0.00 1.40
177 178 6.408428 CGGTTAAGACGAGTGCATAATAAAC 58.592 40.000 0.00 0.00 0.00 2.01
178 179 6.509039 CGGTTAAGACGAGTGCATAATAAACC 60.509 42.308 0.00 0.00 0.00 3.27
179 180 6.314400 GGTTAAGACGAGTGCATAATAAACCA 59.686 38.462 0.00 0.00 33.38 3.67
180 181 5.796350 AAGACGAGTGCATAATAAACCAC 57.204 39.130 0.00 0.00 0.00 4.16
181 182 4.189231 AGACGAGTGCATAATAAACCACC 58.811 43.478 0.00 0.00 0.00 4.61
182 183 2.933906 ACGAGTGCATAATAAACCACCG 59.066 45.455 0.00 0.00 0.00 4.94
183 184 3.191669 CGAGTGCATAATAAACCACCGA 58.808 45.455 0.00 0.00 0.00 4.69
184 185 3.807622 CGAGTGCATAATAAACCACCGAT 59.192 43.478 0.00 0.00 0.00 4.18
185 186 4.986034 CGAGTGCATAATAAACCACCGATA 59.014 41.667 0.00 0.00 0.00 2.92
186 187 5.637810 CGAGTGCATAATAAACCACCGATAT 59.362 40.000 0.00 0.00 0.00 1.63
187 188 6.809689 CGAGTGCATAATAAACCACCGATATA 59.190 38.462 0.00 0.00 0.00 0.86
188 189 7.329962 CGAGTGCATAATAAACCACCGATATAA 59.670 37.037 0.00 0.00 0.00 0.98
189 190 8.911918 AGTGCATAATAAACCACCGATATAAA 57.088 30.769 0.00 0.00 0.00 1.40
190 191 9.344772 AGTGCATAATAAACCACCGATATAAAA 57.655 29.630 0.00 0.00 0.00 1.52
200 201 8.746052 AACCACCGATATAAAATTGAGATTGA 57.254 30.769 0.00 0.00 0.00 2.57
201 202 8.924511 ACCACCGATATAAAATTGAGATTGAT 57.075 30.769 0.00 0.00 0.00 2.57
214 215 9.911788 AAATTGAGATTGATAGTGTATCTTGGT 57.088 29.630 0.00 0.00 36.17 3.67
215 216 8.899427 ATTGAGATTGATAGTGTATCTTGGTG 57.101 34.615 0.00 0.00 36.17 4.17
216 217 7.660030 TGAGATTGATAGTGTATCTTGGTGA 57.340 36.000 0.00 0.00 36.17 4.02
217 218 8.255111 TGAGATTGATAGTGTATCTTGGTGAT 57.745 34.615 0.00 0.00 39.11 3.06
218 219 8.146412 TGAGATTGATAGTGTATCTTGGTGATG 58.854 37.037 0.00 0.00 36.65 3.07
219 220 6.933521 AGATTGATAGTGTATCTTGGTGATGC 59.066 38.462 0.00 0.00 38.12 3.91
220 221 5.612725 TGATAGTGTATCTTGGTGATGCA 57.387 39.130 0.00 0.00 43.71 3.96
221 222 5.988287 TGATAGTGTATCTTGGTGATGCAA 58.012 37.500 0.00 0.00 46.47 4.08
222 223 5.817296 TGATAGTGTATCTTGGTGATGCAAC 59.183 40.000 0.00 0.00 46.47 4.17
223 224 4.019792 AGTGTATCTTGGTGATGCAACA 57.980 40.909 0.00 0.00 46.47 3.33
224 225 4.397420 AGTGTATCTTGGTGATGCAACAA 58.603 39.130 0.00 0.00 46.47 2.83
225 226 4.826733 AGTGTATCTTGGTGATGCAACAAA 59.173 37.500 0.00 0.00 46.47 2.83
226 227 5.301551 AGTGTATCTTGGTGATGCAACAAAA 59.698 36.000 0.00 0.00 46.47 2.44
227 228 6.015180 AGTGTATCTTGGTGATGCAACAAAAT 60.015 34.615 0.00 0.00 46.47 1.82
228 229 6.089820 GTGTATCTTGGTGATGCAACAAAATG 59.910 38.462 0.00 0.00 46.47 2.32
229 230 4.669206 TCTTGGTGATGCAACAAAATGT 57.331 36.364 0.00 0.00 40.71 2.71
230 231 4.370049 TCTTGGTGATGCAACAAAATGTG 58.630 39.130 0.00 0.00 40.71 3.21
231 232 3.109044 TGGTGATGCAACAAAATGTGG 57.891 42.857 0.00 0.00 0.00 4.17
232 233 2.433604 TGGTGATGCAACAAAATGTGGT 59.566 40.909 0.00 0.00 0.00 4.16
233 234 3.059166 GGTGATGCAACAAAATGTGGTC 58.941 45.455 0.00 0.00 0.00 4.02
234 235 3.492309 GGTGATGCAACAAAATGTGGTCA 60.492 43.478 0.00 0.00 0.00 4.02
235 236 4.309099 GTGATGCAACAAAATGTGGTCAT 58.691 39.130 0.00 0.00 35.59 3.06
236 237 4.150980 GTGATGCAACAAAATGTGGTCATG 59.849 41.667 0.00 0.00 34.19 3.07
237 238 4.038883 TGATGCAACAAAATGTGGTCATGA 59.961 37.500 0.00 0.00 34.19 3.07
238 239 4.603989 TGCAACAAAATGTGGTCATGAT 57.396 36.364 0.00 0.00 34.19 2.45
239 240 5.718724 TGCAACAAAATGTGGTCATGATA 57.281 34.783 0.00 0.00 34.19 2.15
240 241 6.094193 TGCAACAAAATGTGGTCATGATAA 57.906 33.333 0.00 0.00 34.19 1.75
241 242 6.699366 TGCAACAAAATGTGGTCATGATAAT 58.301 32.000 0.00 0.00 34.19 1.28
242 243 7.160049 TGCAACAAAATGTGGTCATGATAATT 58.840 30.769 0.00 0.00 34.19 1.40
243 244 7.117956 TGCAACAAAATGTGGTCATGATAATTG 59.882 33.333 0.00 1.25 34.19 2.32
244 245 7.331440 GCAACAAAATGTGGTCATGATAATTGA 59.669 33.333 0.00 0.00 34.19 2.57
245 246 9.205719 CAACAAAATGTGGTCATGATAATTGAA 57.794 29.630 0.00 0.00 34.19 2.69
246 247 9.775854 AACAAAATGTGGTCATGATAATTGAAA 57.224 25.926 0.00 0.00 34.19 2.69
247 248 9.947433 ACAAAATGTGGTCATGATAATTGAAAT 57.053 25.926 0.00 0.00 34.19 2.17
275 276 2.147436 TTTTTCTCCCGTTGCAATGC 57.853 45.000 13.42 0.00 0.00 3.56
276 277 1.035923 TTTTCTCCCGTTGCAATGCA 58.964 45.000 13.42 2.72 36.47 3.96
277 278 0.313672 TTTCTCCCGTTGCAATGCAC 59.686 50.000 7.72 2.39 38.71 4.57
278 279 1.851021 TTCTCCCGTTGCAATGCACG 61.851 55.000 7.72 14.71 38.71 5.34
279 280 3.326889 CTCCCGTTGCAATGCACGG 62.327 63.158 28.95 28.95 45.37 4.94
283 284 4.740431 GTTGCAATGCACGGGCCC 62.740 66.667 13.57 13.57 38.71 5.80
284 285 4.992740 TTGCAATGCACGGGCCCT 62.993 61.111 22.43 3.67 38.71 5.19
285 286 4.992740 TGCAATGCACGGGCCCTT 62.993 61.111 22.43 7.92 40.13 3.95
286 287 3.694538 GCAATGCACGGGCCCTTT 61.695 61.111 22.43 2.91 40.13 3.11
287 288 3.059099 CAATGCACGGGCCCTTTT 58.941 55.556 22.43 0.00 40.13 2.27
288 289 1.374505 CAATGCACGGGCCCTTTTG 60.375 57.895 22.43 15.24 40.13 2.44
289 290 3.238755 AATGCACGGGCCCTTTTGC 62.239 57.895 25.64 25.64 40.13 3.68
290 291 4.912395 TGCACGGGCCCTTTTGCT 62.912 61.111 29.66 2.93 40.13 3.91
291 292 2.675075 GCACGGGCCCTTTTGCTA 60.675 61.111 25.28 0.00 32.00 3.49
292 293 2.700773 GCACGGGCCCTTTTGCTAG 61.701 63.158 25.28 9.64 32.00 3.42
293 294 1.303317 CACGGGCCCTTTTGCTAGT 60.303 57.895 22.43 4.23 0.00 2.57
294 295 0.035820 CACGGGCCCTTTTGCTAGTA 60.036 55.000 22.43 0.00 0.00 1.82
295 296 0.035725 ACGGGCCCTTTTGCTAGTAC 60.036 55.000 22.43 0.00 0.00 2.73
296 297 0.035820 CGGGCCCTTTTGCTAGTACA 60.036 55.000 22.43 0.00 0.00 2.90
297 298 1.612199 CGGGCCCTTTTGCTAGTACAA 60.612 52.381 22.43 0.00 0.00 2.41
298 299 2.735151 GGGCCCTTTTGCTAGTACAAT 58.265 47.619 17.04 0.00 0.00 2.71
299 300 2.427095 GGGCCCTTTTGCTAGTACAATG 59.573 50.000 17.04 0.00 0.00 2.82
300 301 2.159240 GGCCCTTTTGCTAGTACAATGC 60.159 50.000 0.00 0.00 0.00 3.56
301 302 2.491693 GCCCTTTTGCTAGTACAATGCA 59.508 45.455 0.00 0.00 34.69 3.96
302 303 3.131046 GCCCTTTTGCTAGTACAATGCAT 59.869 43.478 0.00 0.00 36.55 3.96
303 304 4.338118 GCCCTTTTGCTAGTACAATGCATA 59.662 41.667 0.00 2.18 36.55 3.14
304 305 5.163561 GCCCTTTTGCTAGTACAATGCATAA 60.164 40.000 0.00 8.57 36.55 1.90
305 306 6.627065 GCCCTTTTGCTAGTACAATGCATAAA 60.627 38.462 0.00 9.73 36.55 1.40
306 307 7.319646 CCCTTTTGCTAGTACAATGCATAAAA 58.680 34.615 0.00 0.00 36.55 1.52
307 308 7.816995 CCCTTTTGCTAGTACAATGCATAAAAA 59.183 33.333 0.00 5.91 36.55 1.94
308 309 9.369904 CCTTTTGCTAGTACAATGCATAAAAAT 57.630 29.630 0.00 0.00 36.55 1.82
310 311 8.613613 TTTGCTAGTACAATGCATAAAAATCG 57.386 30.769 0.00 0.00 36.55 3.34
311 312 7.315247 TGCTAGTACAATGCATAAAAATCGT 57.685 32.000 0.00 0.00 0.00 3.73
312 313 8.426881 TGCTAGTACAATGCATAAAAATCGTA 57.573 30.769 0.00 0.00 0.00 3.43
313 314 8.547894 TGCTAGTACAATGCATAAAAATCGTAG 58.452 33.333 0.00 0.00 0.00 3.51
314 315 8.548721 GCTAGTACAATGCATAAAAATCGTAGT 58.451 33.333 0.00 0.00 0.00 2.73
316 317 8.487313 AGTACAATGCATAAAAATCGTAGTCA 57.513 30.769 0.00 0.00 0.00 3.41
317 318 8.941977 AGTACAATGCATAAAAATCGTAGTCAA 58.058 29.630 0.00 0.00 0.00 3.18
318 319 9.549509 GTACAATGCATAAAAATCGTAGTCAAA 57.450 29.630 0.00 0.00 0.00 2.69
319 320 8.673626 ACAATGCATAAAAATCGTAGTCAAAG 57.326 30.769 0.00 0.00 0.00 2.77
320 321 8.296713 ACAATGCATAAAAATCGTAGTCAAAGT 58.703 29.630 0.00 0.00 0.00 2.66
321 322 9.128107 CAATGCATAAAAATCGTAGTCAAAGTT 57.872 29.630 0.00 0.00 0.00 2.66
322 323 8.673626 ATGCATAAAAATCGTAGTCAAAGTTG 57.326 30.769 0.00 0.00 0.00 3.16
323 324 7.644490 TGCATAAAAATCGTAGTCAAAGTTGT 58.356 30.769 0.00 0.00 0.00 3.32
324 325 7.589587 TGCATAAAAATCGTAGTCAAAGTTGTG 59.410 33.333 0.00 0.00 0.00 3.33
325 326 7.409343 GCATAAAAATCGTAGTCAAAGTTGTGC 60.409 37.037 0.00 0.00 0.00 4.57
326 327 5.493133 AAAATCGTAGTCAAAGTTGTGCA 57.507 34.783 0.00 0.00 0.00 4.57
327 328 5.493133 AAATCGTAGTCAAAGTTGTGCAA 57.507 34.783 0.00 0.00 0.00 4.08
328 329 3.936902 TCGTAGTCAAAGTTGTGCAAC 57.063 42.857 6.94 6.94 41.45 4.17
329 330 2.283086 TCGTAGTCAAAGTTGTGCAACG 59.717 45.455 9.10 0.00 45.50 4.10
330 331 2.283086 CGTAGTCAAAGTTGTGCAACGA 59.717 45.455 9.10 0.00 45.50 3.85
331 332 3.242155 CGTAGTCAAAGTTGTGCAACGAA 60.242 43.478 9.10 0.00 45.50 3.85
332 333 3.405170 AGTCAAAGTTGTGCAACGAAG 57.595 42.857 9.10 4.04 45.50 3.79
333 334 3.006940 AGTCAAAGTTGTGCAACGAAGA 58.993 40.909 9.10 6.01 45.50 2.87
334 335 3.098636 GTCAAAGTTGTGCAACGAAGAC 58.901 45.455 9.10 12.74 45.50 3.01
335 336 2.096819 TCAAAGTTGTGCAACGAAGACC 59.903 45.455 9.10 0.00 45.50 3.85
336 337 1.745232 AAGTTGTGCAACGAAGACCA 58.255 45.000 9.10 0.00 45.50 4.02
337 338 1.299541 AGTTGTGCAACGAAGACCAG 58.700 50.000 9.10 0.00 45.50 4.00
338 339 1.134521 AGTTGTGCAACGAAGACCAGA 60.135 47.619 9.10 0.00 45.50 3.86
339 340 1.668751 GTTGTGCAACGAAGACCAGAA 59.331 47.619 0.00 0.00 42.39 3.02
340 341 2.031258 TGTGCAACGAAGACCAGAAA 57.969 45.000 0.00 0.00 42.39 2.52
341 342 2.360844 TGTGCAACGAAGACCAGAAAA 58.639 42.857 0.00 0.00 42.39 2.29
342 343 2.354510 TGTGCAACGAAGACCAGAAAAG 59.645 45.455 0.00 0.00 42.39 2.27
343 344 2.354821 GTGCAACGAAGACCAGAAAAGT 59.645 45.455 0.00 0.00 0.00 2.66
344 345 2.612212 TGCAACGAAGACCAGAAAAGTC 59.388 45.455 0.00 0.00 34.31 3.01
345 346 2.612212 GCAACGAAGACCAGAAAAGTCA 59.388 45.455 0.00 0.00 36.68 3.41
346 347 3.064820 GCAACGAAGACCAGAAAAGTCAA 59.935 43.478 0.00 0.00 36.68 3.18
347 348 4.438200 GCAACGAAGACCAGAAAAGTCAAA 60.438 41.667 0.00 0.00 36.68 2.69
348 349 4.877323 ACGAAGACCAGAAAAGTCAAAC 57.123 40.909 0.00 0.00 36.68 2.93
349 350 3.626217 ACGAAGACCAGAAAAGTCAAACC 59.374 43.478 0.00 0.00 36.68 3.27
350 351 3.625764 CGAAGACCAGAAAAGTCAAACCA 59.374 43.478 0.00 0.00 36.68 3.67
351 352 4.495844 CGAAGACCAGAAAAGTCAAACCAC 60.496 45.833 0.00 0.00 36.68 4.16
352 353 2.943033 AGACCAGAAAAGTCAAACCACG 59.057 45.455 0.00 0.00 36.68 4.94
353 354 1.404035 ACCAGAAAAGTCAAACCACGC 59.596 47.619 0.00 0.00 0.00 5.34
354 355 1.269051 CCAGAAAAGTCAAACCACGCC 60.269 52.381 0.00 0.00 0.00 5.68
355 356 1.676006 CAGAAAAGTCAAACCACGCCT 59.324 47.619 0.00 0.00 0.00 5.52
356 357 2.099098 CAGAAAAGTCAAACCACGCCTT 59.901 45.455 0.00 0.00 0.00 4.35
357 358 3.314080 CAGAAAAGTCAAACCACGCCTTA 59.686 43.478 0.00 0.00 0.00 2.69
358 359 4.023193 CAGAAAAGTCAAACCACGCCTTAT 60.023 41.667 0.00 0.00 0.00 1.73
359 360 5.180492 CAGAAAAGTCAAACCACGCCTTATA 59.820 40.000 0.00 0.00 0.00 0.98
360 361 5.944007 AGAAAAGTCAAACCACGCCTTATAT 59.056 36.000 0.00 0.00 0.00 0.86
361 362 6.433093 AGAAAAGTCAAACCACGCCTTATATT 59.567 34.615 0.00 0.00 0.00 1.28
362 363 6.584185 AAAGTCAAACCACGCCTTATATTT 57.416 33.333 0.00 0.00 0.00 1.40
363 364 6.584185 AAGTCAAACCACGCCTTATATTTT 57.416 33.333 0.00 0.00 0.00 1.82
364 365 5.949735 AGTCAAACCACGCCTTATATTTTG 58.050 37.500 0.00 0.00 0.00 2.44
365 366 5.099575 GTCAAACCACGCCTTATATTTTGG 58.900 41.667 0.00 0.00 0.00 3.28
366 367 4.767928 TCAAACCACGCCTTATATTTTGGT 59.232 37.500 0.00 0.00 39.05 3.67
367 368 5.944599 TCAAACCACGCCTTATATTTTGGTA 59.055 36.000 0.00 0.00 36.30 3.25
368 369 6.433404 TCAAACCACGCCTTATATTTTGGTAA 59.567 34.615 0.00 0.00 36.30 2.85
369 370 6.445357 AACCACGCCTTATATTTTGGTAAG 57.555 37.500 0.00 0.00 36.30 2.34
370 371 4.885325 ACCACGCCTTATATTTTGGTAAGG 59.115 41.667 6.78 6.78 46.28 2.69
371 372 5.127491 CCACGCCTTATATTTTGGTAAGGA 58.873 41.667 13.75 0.00 46.40 3.36
372 373 5.238650 CCACGCCTTATATTTTGGTAAGGAG 59.761 44.000 13.75 12.64 46.40 3.69
373 374 5.238650 CACGCCTTATATTTTGGTAAGGAGG 59.761 44.000 13.75 7.81 46.06 4.30
374 375 4.760204 CGCCTTATATTTTGGTAAGGAGGG 59.240 45.833 13.75 0.85 46.40 4.30
375 376 5.455612 CGCCTTATATTTTGGTAAGGAGGGA 60.456 44.000 13.75 0.00 46.40 4.20
376 377 6.004574 GCCTTATATTTTGGTAAGGAGGGAG 58.995 44.000 13.75 0.00 46.40 4.30
377 378 6.410504 GCCTTATATTTTGGTAAGGAGGGAGT 60.411 42.308 13.75 0.00 46.40 3.85
378 379 7.202158 GCCTTATATTTTGGTAAGGAGGGAGTA 60.202 40.741 13.75 0.00 46.40 2.59
379 380 8.376270 CCTTATATTTTGGTAAGGAGGGAGTAG 58.624 40.741 5.45 0.00 46.40 2.57
380 381 9.155785 CTTATATTTTGGTAAGGAGGGAGTAGA 57.844 37.037 0.00 0.00 0.00 2.59
381 382 9.510062 TTATATTTTGGTAAGGAGGGAGTAGAA 57.490 33.333 0.00 0.00 0.00 2.10
382 383 6.713731 ATTTTGGTAAGGAGGGAGTAGAAA 57.286 37.500 0.00 0.00 0.00 2.52
383 384 6.713731 TTTTGGTAAGGAGGGAGTAGAAAT 57.286 37.500 0.00 0.00 0.00 2.17
410 411 9.941325 ATATATTTGTTGGAAGCAAATCACAAA 57.059 25.926 5.49 6.13 43.12 2.83
419 420 7.504403 TGGAAGCAAATCACAAATTAGGAAAA 58.496 30.769 0.00 0.00 0.00 2.29
420 421 7.989741 TGGAAGCAAATCACAAATTAGGAAAAA 59.010 29.630 0.00 0.00 0.00 1.94
557 560 5.181690 TGTTGGTAGCAAATCACAAGTTC 57.818 39.130 9.30 0.00 0.00 3.01
770 776 6.676990 TGCATTCCATCTATAGTCTGATGT 57.323 37.500 0.00 0.00 38.59 3.06
773 779 7.035004 GCATTCCATCTATAGTCTGATGTCTC 58.965 42.308 0.00 0.00 38.59 3.36
774 780 7.093814 GCATTCCATCTATAGTCTGATGTCTCT 60.094 40.741 0.00 0.00 38.59 3.10
777 783 7.293828 TCCATCTATAGTCTGATGTCTCTGTT 58.706 38.462 0.00 0.00 38.59 3.16
779 785 7.448161 CCATCTATAGTCTGATGTCTCTGTTCT 59.552 40.741 0.00 0.00 38.59 3.01
786 792 7.488322 AGTCTGATGTCTCTGTTCTATAAAGC 58.512 38.462 0.00 0.00 0.00 3.51
793 799 7.671302 TGTCTCTGTTCTATAAAGCTTGTTCT 58.329 34.615 0.00 0.00 0.00 3.01
816 822 7.988737 TCTTCAAATAAATGTATCTGGCACTG 58.011 34.615 0.00 0.00 0.00 3.66
818 824 7.320443 TCAAATAAATGTATCTGGCACTGAC 57.680 36.000 0.00 0.00 39.59 3.51
838 844 7.656542 CACTGACTTGATGCTAGATACATTCAT 59.343 37.037 0.00 0.00 0.00 2.57
869 875 7.601856 AGACAAGAGATAAGTCTGAGACAAAG 58.398 38.462 15.86 0.00 40.83 2.77
872 878 8.207545 ACAAGAGATAAGTCTGAGACAAAGTTT 58.792 33.333 15.86 2.34 33.97 2.66
893 899 4.903045 TTTTTCTGAACGGAGGGAGTAT 57.097 40.909 0.00 0.00 0.00 2.12
975 1006 3.009033 ACAGGTGCTACATTAGGAAGCAA 59.991 43.478 0.00 0.00 47.00 3.91
1030 1063 2.033141 TCCTCAGCAGCTGCCAAC 59.967 61.111 34.39 8.12 43.38 3.77
1032 1065 2.357881 CTCAGCAGCTGCCAACGA 60.358 61.111 34.39 23.11 43.38 3.85
1060 1093 2.893637 CTACTGGTCGTGCTAGCATTT 58.106 47.619 22.51 3.03 0.00 2.32
1664 1739 2.740826 GCGGTACTTTGGCGAGCA 60.741 61.111 0.00 0.00 0.00 4.26
1899 1986 3.077556 GGCGAGAGGAGGGAGCAA 61.078 66.667 0.00 0.00 0.00 3.91
1948 2035 0.321996 GAAAGACGCTCAGGGGAAGT 59.678 55.000 0.00 0.00 0.00 3.01
2214 4041 3.064324 GCGGCTGGTGCAGGAATT 61.064 61.111 0.00 0.00 41.91 2.17
2242 4069 1.135689 CCGCAACTCAACTATGCCAAC 60.136 52.381 0.00 0.00 36.75 3.77
2458 4285 3.127533 GCTGAAGGCGGCGATGTT 61.128 61.111 12.98 0.00 36.53 2.71
2707 4534 1.682684 CCTCTACTCCGCCACTGGT 60.683 63.158 0.00 0.00 0.00 4.00
2727 4554 9.838339 CACTGGTATCTAATCTAATTGACCTTT 57.162 33.333 0.00 0.00 0.00 3.11
2732 4559 6.073447 TCTAATCTAATTGACCTTTGGCCA 57.927 37.500 0.00 0.00 0.00 5.36
2748 4575 3.715287 TGGCCAGTCTAGGTTACATGTA 58.285 45.455 0.00 0.08 0.00 2.29
2751 4578 4.161754 GGCCAGTCTAGGTTACATGTAACT 59.838 45.833 35.54 26.46 43.58 2.24
2870 4697 5.614324 ACATCTAATTGATCTTCGGTGGA 57.386 39.130 0.00 0.00 32.05 4.02
2931 4758 9.770097 TTATATCCTGCAAAAACAAAATCACAA 57.230 25.926 0.00 0.00 0.00 3.33
3000 4829 6.566753 GCCACCGCTATCTAATTGATCTTTTC 60.567 42.308 0.00 0.00 36.65 2.29
3028 4857 5.591099 CCAGAGTTGCATGTAACAAGTTTT 58.409 37.500 25.60 6.51 30.90 2.43
3139 5095 7.750229 ACTGTCATAGTGTCAAAAACATCAT 57.250 32.000 0.00 0.00 40.80 2.45
3189 5356 3.665675 AAGTCACCGCGGGCATCTC 62.666 63.158 31.76 13.02 0.00 2.75
3276 5443 5.153950 AGTCACTTATGAACTGGTTCTCC 57.846 43.478 13.54 0.00 40.14 3.71
3339 5507 4.175787 AGTCATCTGTCTACGTTTGGTC 57.824 45.455 0.00 0.00 0.00 4.02
3352 5520 3.181483 ACGTTTGGTCGTAGAGAACTGTT 60.181 43.478 0.00 0.00 42.35 3.16
3446 5908 5.282510 GGAGACGTCAGTTTATAGTGGATG 58.717 45.833 19.50 0.00 0.00 3.51
3456 5918 6.657966 CAGTTTATAGTGGATGATGATGCCAT 59.342 38.462 0.00 0.00 33.66 4.40
3477 5939 5.535030 CCATGATGACTTTGGATGATGATGT 59.465 40.000 0.00 0.00 0.00 3.06
3597 6059 8.934023 AATGACTCTTGTTAGGAAATAAACCA 57.066 30.769 0.00 0.00 0.00 3.67
3598 6060 7.739498 TGACTCTTGTTAGGAAATAAACCAC 57.261 36.000 0.00 0.00 0.00 4.16
3599 6061 6.425721 TGACTCTTGTTAGGAAATAAACCACG 59.574 38.462 0.00 0.00 0.00 4.94
3600 6062 6.293698 ACTCTTGTTAGGAAATAAACCACGT 58.706 36.000 0.00 0.00 0.00 4.49
3601 6063 6.204108 ACTCTTGTTAGGAAATAAACCACGTG 59.796 38.462 9.08 9.08 0.00 4.49
3602 6064 6.056884 TCTTGTTAGGAAATAAACCACGTGT 58.943 36.000 15.65 0.00 0.00 4.49
3603 6065 5.676532 TGTTAGGAAATAAACCACGTGTG 57.323 39.130 15.65 8.62 0.00 3.82
3604 6066 5.124645 TGTTAGGAAATAAACCACGTGTGT 58.875 37.500 15.65 9.31 0.00 3.72
3605 6067 5.236911 TGTTAGGAAATAAACCACGTGTGTC 59.763 40.000 15.65 0.00 0.00 3.67
3606 6068 3.811083 AGGAAATAAACCACGTGTGTCA 58.189 40.909 15.65 4.63 0.00 3.58
3607 6069 4.394729 AGGAAATAAACCACGTGTGTCAT 58.605 39.130 15.65 7.54 0.00 3.06
3608 6070 4.215399 AGGAAATAAACCACGTGTGTCATG 59.785 41.667 15.65 0.00 0.00 3.07
3609 6071 4.472286 GAAATAAACCACGTGTGTCATGG 58.528 43.478 15.65 0.00 39.57 3.66
3611 6073 1.021202 AAACCACGTGTGTCATGGTG 58.979 50.000 15.65 0.00 46.18 4.17
3612 6074 0.107410 AACCACGTGTGTCATGGTGT 60.107 50.000 15.65 0.00 46.18 4.16
3613 6075 0.813610 ACCACGTGTGTCATGGTGTG 60.814 55.000 15.65 0.00 45.15 3.82
3614 6076 0.813610 CCACGTGTGTCATGGTGTGT 60.814 55.000 15.65 0.00 0.00 3.72
3615 6077 0.304401 CACGTGTGTCATGGTGTGTG 59.696 55.000 7.58 0.00 0.00 3.82
3616 6078 0.107897 ACGTGTGTCATGGTGTGTGT 60.108 50.000 0.00 0.00 0.00 3.72
3617 6079 1.137282 ACGTGTGTCATGGTGTGTGTA 59.863 47.619 0.00 0.00 0.00 2.90
3618 6080 1.792367 CGTGTGTCATGGTGTGTGTAG 59.208 52.381 0.00 0.00 0.00 2.74
3619 6081 1.531149 GTGTGTCATGGTGTGTGTAGC 59.469 52.381 0.00 0.00 0.00 3.58
3620 6082 0.790207 GTGTCATGGTGTGTGTAGCG 59.210 55.000 0.00 0.00 0.00 4.26
3621 6083 0.391228 TGTCATGGTGTGTGTAGCGT 59.609 50.000 0.00 0.00 0.00 5.07
3622 6084 0.790207 GTCATGGTGTGTGTAGCGTG 59.210 55.000 0.00 0.00 36.63 5.34
3623 6085 0.948623 TCATGGTGTGTGTAGCGTGC 60.949 55.000 0.00 0.00 35.59 5.34
3624 6086 2.027073 ATGGTGTGTGTAGCGTGCG 61.027 57.895 0.00 0.00 0.00 5.34
3625 6087 2.660552 GGTGTGTGTAGCGTGCGT 60.661 61.111 0.00 0.00 0.00 5.24
3626 6088 2.544359 GTGTGTGTAGCGTGCGTG 59.456 61.111 0.00 0.00 0.00 5.34
3627 6089 3.334751 TGTGTGTAGCGTGCGTGC 61.335 61.111 0.00 0.00 0.00 5.34
3628 6090 4.409588 GTGTGTAGCGTGCGTGCG 62.410 66.667 0.00 0.00 40.67 5.34
3629 6091 4.934942 TGTGTAGCGTGCGTGCGT 62.935 61.111 3.11 0.00 40.67 5.24
3630 6092 4.409588 GTGTAGCGTGCGTGCGTG 62.410 66.667 3.11 0.00 40.67 5.34
3643 6105 4.011654 GCGTGCGCATGTGTGTGA 62.012 61.111 29.00 0.00 41.49 3.58
3644 6106 2.127646 CGTGCGCATGTGTGTGAC 60.128 61.111 21.57 0.00 38.10 3.67
3645 6107 2.127646 GTGCGCATGTGTGTGACG 60.128 61.111 15.91 0.00 38.10 4.35
3646 6108 2.587473 TGCGCATGTGTGTGACGT 60.587 55.556 5.66 0.00 38.10 4.34
3647 6109 2.127646 GCGCATGTGTGTGACGTG 60.128 61.111 0.30 0.00 43.58 4.49
3648 6110 2.550772 CGCATGTGTGTGACGTGG 59.449 61.111 0.00 0.00 41.35 4.94
3649 6111 2.243957 CGCATGTGTGTGACGTGGT 61.244 57.895 0.00 0.00 41.35 4.16
3650 6112 1.279539 GCATGTGTGTGACGTGGTG 59.720 57.895 0.00 0.00 41.35 4.17
3651 6113 1.941072 CATGTGTGTGACGTGGTGG 59.059 57.895 0.00 0.00 37.86 4.61
3652 6114 0.813610 CATGTGTGTGACGTGGTGGT 60.814 55.000 0.00 0.00 37.86 4.16
3653 6115 0.531974 ATGTGTGTGACGTGGTGGTC 60.532 55.000 0.00 0.00 37.45 4.02
3654 6116 1.153529 GTGTGTGACGTGGTGGTCA 60.154 57.895 0.00 0.00 44.25 4.02
3655 6117 1.142965 TGTGTGACGTGGTGGTCAG 59.857 57.895 0.00 0.00 46.81 3.51
3656 6118 2.108157 TGTGACGTGGTGGTCAGC 59.892 61.111 0.00 0.00 46.81 4.26
3657 6119 2.665185 GTGACGTGGTGGTCAGCC 60.665 66.667 0.00 0.00 46.81 4.85
3658 6120 4.293648 TGACGTGGTGGTCAGCCG 62.294 66.667 0.00 8.60 41.76 5.52
3681 6143 1.541379 GCTAGCTAGCTACTCCCTCC 58.459 60.000 33.71 5.30 45.62 4.30
3682 6144 1.816074 CTAGCTAGCTACTCCCTCCG 58.184 60.000 20.67 4.73 0.00 4.63
3683 6145 1.072648 CTAGCTAGCTACTCCCTCCGT 59.927 57.143 20.67 0.00 0.00 4.69
3684 6146 0.259356 AGCTAGCTACTCCCTCCGTT 59.741 55.000 17.69 0.00 0.00 4.44
3685 6147 0.669619 GCTAGCTACTCCCTCCGTTC 59.330 60.000 7.70 0.00 0.00 3.95
3686 6148 1.320507 CTAGCTACTCCCTCCGTTCC 58.679 60.000 0.00 0.00 0.00 3.62
3687 6149 0.627451 TAGCTACTCCCTCCGTTCCA 59.373 55.000 0.00 0.00 0.00 3.53
3688 6150 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
3689 6151 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
3690 6152 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
3691 6153 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
3692 6154 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
3693 6155 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3694 6156 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3695 6157 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3696 6158 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3697 6159 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3698 6160 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3699 6161 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
3700 6162 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3701 6163 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3702 6164 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3703 6165 6.414732 TCCGTTCCAAAATAGATGACTCAAT 58.585 36.000 0.00 0.00 0.00 2.57
3704 6166 6.884295 TCCGTTCCAAAATAGATGACTCAATT 59.116 34.615 0.00 0.00 0.00 2.32
3705 6167 8.044309 TCCGTTCCAAAATAGATGACTCAATTA 58.956 33.333 0.00 0.00 0.00 1.40
3706 6168 8.338259 CCGTTCCAAAATAGATGACTCAATTAG 58.662 37.037 0.00 0.00 0.00 1.73
3707 6169 8.883731 CGTTCCAAAATAGATGACTCAATTAGT 58.116 33.333 0.00 0.00 42.80 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.181309 AGTGTCTCAAGCTTAGTACAGC 57.819 45.455 0.00 0.00 40.44 4.40
42 43 6.678878 TGTAAGTGTCTCAAGCTTAGTACAG 58.321 40.000 0.00 0.00 0.00 2.74
43 44 6.644248 TGTAAGTGTCTCAAGCTTAGTACA 57.356 37.500 0.00 0.36 0.00 2.90
44 45 7.652507 ACTTTGTAAGTGTCTCAAGCTTAGTAC 59.347 37.037 0.00 0.00 41.01 2.73
45 46 7.723324 ACTTTGTAAGTGTCTCAAGCTTAGTA 58.277 34.615 0.00 0.00 41.01 1.82
46 47 6.583562 ACTTTGTAAGTGTCTCAAGCTTAGT 58.416 36.000 0.00 0.00 41.01 2.24
47 48 7.011482 ACAACTTTGTAAGTGTCTCAAGCTTAG 59.989 37.037 0.00 0.00 41.91 2.18
48 49 6.821665 ACAACTTTGTAAGTGTCTCAAGCTTA 59.178 34.615 0.00 0.00 41.91 3.09
49 50 5.648092 ACAACTTTGTAAGTGTCTCAAGCTT 59.352 36.000 0.00 0.00 41.91 3.74
50 51 5.186198 ACAACTTTGTAAGTGTCTCAAGCT 58.814 37.500 0.00 0.00 41.91 3.74
51 52 5.485662 ACAACTTTGTAAGTGTCTCAAGC 57.514 39.130 0.00 0.00 41.91 4.01
52 53 7.772332 AGTACAACTTTGTAAGTGTCTCAAG 57.228 36.000 3.38 0.00 44.46 3.02
53 54 9.309516 CTTAGTACAACTTTGTAAGTGTCTCAA 57.690 33.333 3.38 0.00 44.46 3.02
54 55 8.472413 ACTTAGTACAACTTTGTAAGTGTCTCA 58.528 33.333 3.38 0.00 44.46 3.27
55 56 8.868635 ACTTAGTACAACTTTGTAAGTGTCTC 57.131 34.615 3.38 0.00 44.46 3.36
56 57 9.662947 AAACTTAGTACAACTTTGTAAGTGTCT 57.337 29.630 8.73 3.20 44.46 3.41
57 58 9.698617 CAAACTTAGTACAACTTTGTAAGTGTC 57.301 33.333 8.73 0.00 44.46 3.67
58 59 9.439500 TCAAACTTAGTACAACTTTGTAAGTGT 57.561 29.630 8.73 2.61 44.46 3.55
59 60 9.916397 CTCAAACTTAGTACAACTTTGTAAGTG 57.084 33.333 8.73 0.91 44.46 3.16
60 61 9.880157 TCTCAAACTTAGTACAACTTTGTAAGT 57.120 29.630 3.38 3.63 44.46 2.24
62 63 9.656040 TGTCTCAAACTTAGTACAACTTTGTAA 57.344 29.630 3.38 0.00 44.46 2.41
63 64 9.090692 GTGTCTCAAACTTAGTACAACTTTGTA 57.909 33.333 0.00 0.00 42.35 2.41
64 65 7.822822 AGTGTCTCAAACTTAGTACAACTTTGT 59.177 33.333 0.00 0.00 44.86 2.83
65 66 8.197988 AGTGTCTCAAACTTAGTACAACTTTG 57.802 34.615 0.00 0.00 0.00 2.77
66 67 8.788325 AAGTGTCTCAAACTTAGTACAACTTT 57.212 30.769 0.00 0.00 36.11 2.66
77 78 8.504005 CCGTCATAAAATAAGTGTCTCAAACTT 58.496 33.333 0.00 0.00 40.82 2.66
78 79 7.876068 TCCGTCATAAAATAAGTGTCTCAAACT 59.124 33.333 0.00 0.00 0.00 2.66
79 80 8.025243 TCCGTCATAAAATAAGTGTCTCAAAC 57.975 34.615 0.00 0.00 0.00 2.93
80 81 7.333423 CCTCCGTCATAAAATAAGTGTCTCAAA 59.667 37.037 0.00 0.00 0.00 2.69
81 82 6.816640 CCTCCGTCATAAAATAAGTGTCTCAA 59.183 38.462 0.00 0.00 0.00 3.02
82 83 6.338146 CCTCCGTCATAAAATAAGTGTCTCA 58.662 40.000 0.00 0.00 0.00 3.27
83 84 5.753921 CCCTCCGTCATAAAATAAGTGTCTC 59.246 44.000 0.00 0.00 0.00 3.36
84 85 5.424252 TCCCTCCGTCATAAAATAAGTGTCT 59.576 40.000 0.00 0.00 0.00 3.41
85 86 5.667466 TCCCTCCGTCATAAAATAAGTGTC 58.333 41.667 0.00 0.00 0.00 3.67
86 87 5.189145 ACTCCCTCCGTCATAAAATAAGTGT 59.811 40.000 0.00 0.00 0.00 3.55
87 88 5.671493 ACTCCCTCCGTCATAAAATAAGTG 58.329 41.667 0.00 0.00 0.00 3.16
88 89 5.952347 ACTCCCTCCGTCATAAAATAAGT 57.048 39.130 0.00 0.00 0.00 2.24
89 90 6.812998 TGTACTCCCTCCGTCATAAAATAAG 58.187 40.000 0.00 0.00 0.00 1.73
90 91 6.795144 TGTACTCCCTCCGTCATAAAATAA 57.205 37.500 0.00 0.00 0.00 1.40
91 92 6.325545 ACATGTACTCCCTCCGTCATAAAATA 59.674 38.462 0.00 0.00 0.00 1.40
92 93 5.130477 ACATGTACTCCCTCCGTCATAAAAT 59.870 40.000 0.00 0.00 0.00 1.82
93 94 4.468510 ACATGTACTCCCTCCGTCATAAAA 59.531 41.667 0.00 0.00 0.00 1.52
94 95 4.028131 ACATGTACTCCCTCCGTCATAAA 58.972 43.478 0.00 0.00 0.00 1.40
95 96 3.635373 GACATGTACTCCCTCCGTCATAA 59.365 47.826 0.00 0.00 0.00 1.90
96 97 3.220110 GACATGTACTCCCTCCGTCATA 58.780 50.000 0.00 0.00 0.00 2.15
97 98 2.032620 GACATGTACTCCCTCCGTCAT 58.967 52.381 0.00 0.00 0.00 3.06
98 99 1.272258 TGACATGTACTCCCTCCGTCA 60.272 52.381 0.00 0.00 0.00 4.35
99 100 1.471119 TGACATGTACTCCCTCCGTC 58.529 55.000 0.00 0.00 0.00 4.79
100 101 1.549170 GTTGACATGTACTCCCTCCGT 59.451 52.381 0.00 0.00 0.00 4.69
101 102 1.469251 CGTTGACATGTACTCCCTCCG 60.469 57.143 0.00 0.00 0.00 4.63
102 103 1.822990 TCGTTGACATGTACTCCCTCC 59.177 52.381 0.00 0.00 0.00 4.30
103 104 3.587797 TTCGTTGACATGTACTCCCTC 57.412 47.619 0.00 0.00 0.00 4.30
104 105 4.345859 TTTTCGTTGACATGTACTCCCT 57.654 40.909 0.00 0.00 0.00 4.20
105 106 6.730960 TTATTTTCGTTGACATGTACTCCC 57.269 37.500 0.00 0.00 0.00 4.30
106 107 9.061610 CAATTTATTTTCGTTGACATGTACTCC 57.938 33.333 0.00 0.00 0.00 3.85
107 108 9.607285 ACAATTTATTTTCGTTGACATGTACTC 57.393 29.630 0.00 0.00 0.00 2.59
108 109 9.607285 GACAATTTATTTTCGTTGACATGTACT 57.393 29.630 0.00 0.00 0.00 2.73
109 110 9.607285 AGACAATTTATTTTCGTTGACATGTAC 57.393 29.630 0.00 0.00 0.00 2.90
111 112 9.180678 GAAGACAATTTATTTTCGTTGACATGT 57.819 29.630 0.00 0.00 0.00 3.21
112 113 9.179552 TGAAGACAATTTATTTTCGTTGACATG 57.820 29.630 0.00 0.00 0.00 3.21
113 114 9.398170 CTGAAGACAATTTATTTTCGTTGACAT 57.602 29.630 0.00 0.00 0.00 3.06
114 115 7.860373 CCTGAAGACAATTTATTTTCGTTGACA 59.140 33.333 0.00 0.00 0.00 3.58
115 116 7.148967 GCCTGAAGACAATTTATTTTCGTTGAC 60.149 37.037 0.00 0.00 0.00 3.18
116 117 6.861055 GCCTGAAGACAATTTATTTTCGTTGA 59.139 34.615 0.00 0.00 0.00 3.18
117 118 6.640499 TGCCTGAAGACAATTTATTTTCGTTG 59.360 34.615 0.00 0.00 0.00 4.10
118 119 6.744112 TGCCTGAAGACAATTTATTTTCGTT 58.256 32.000 0.00 0.00 0.00 3.85
119 120 6.325919 TGCCTGAAGACAATTTATTTTCGT 57.674 33.333 0.00 0.00 0.00 3.85
120 121 7.669098 CAATGCCTGAAGACAATTTATTTTCG 58.331 34.615 0.00 0.00 0.00 3.46
121 122 7.332678 AGCAATGCCTGAAGACAATTTATTTTC 59.667 33.333 0.00 0.00 0.00 2.29
122 123 7.118680 CAGCAATGCCTGAAGACAATTTATTTT 59.881 33.333 0.00 0.00 34.77 1.82
123 124 6.592607 CAGCAATGCCTGAAGACAATTTATTT 59.407 34.615 0.00 0.00 34.77 1.40
124 125 6.071221 TCAGCAATGCCTGAAGACAATTTATT 60.071 34.615 0.00 0.00 38.81 1.40
125 126 5.419788 TCAGCAATGCCTGAAGACAATTTAT 59.580 36.000 0.00 0.00 38.81 1.40
126 127 4.766373 TCAGCAATGCCTGAAGACAATTTA 59.234 37.500 0.00 0.00 38.81 1.40
127 128 3.575256 TCAGCAATGCCTGAAGACAATTT 59.425 39.130 0.00 0.00 38.81 1.82
128 129 3.159472 TCAGCAATGCCTGAAGACAATT 58.841 40.909 0.00 0.00 38.81 2.32
129 130 2.799017 TCAGCAATGCCTGAAGACAAT 58.201 42.857 0.00 0.00 38.81 2.71
130 131 2.275134 TCAGCAATGCCTGAAGACAA 57.725 45.000 0.00 0.00 38.81 3.18
131 132 2.089201 CATCAGCAATGCCTGAAGACA 58.911 47.619 0.00 0.00 44.34 3.41
132 133 2.846039 CATCAGCAATGCCTGAAGAC 57.154 50.000 0.00 0.00 44.34 3.01
141 142 2.016318 TCTTAACCGGCATCAGCAATG 58.984 47.619 0.00 0.00 44.61 2.82
142 143 2.017049 GTCTTAACCGGCATCAGCAAT 58.983 47.619 0.00 0.00 44.61 3.56
143 144 1.448985 GTCTTAACCGGCATCAGCAA 58.551 50.000 0.00 0.00 44.61 3.91
144 145 0.739462 CGTCTTAACCGGCATCAGCA 60.739 55.000 0.00 0.00 44.61 4.41
145 146 0.459585 TCGTCTTAACCGGCATCAGC 60.460 55.000 0.00 0.00 41.10 4.26
146 147 1.135083 ACTCGTCTTAACCGGCATCAG 60.135 52.381 0.00 0.00 0.00 2.90
147 148 0.892755 ACTCGTCTTAACCGGCATCA 59.107 50.000 0.00 0.00 0.00 3.07
148 149 1.278238 CACTCGTCTTAACCGGCATC 58.722 55.000 0.00 0.00 0.00 3.91
149 150 0.739813 GCACTCGTCTTAACCGGCAT 60.740 55.000 0.00 0.00 0.00 4.40
150 151 1.373748 GCACTCGTCTTAACCGGCA 60.374 57.895 0.00 0.00 0.00 5.69
151 152 0.739813 ATGCACTCGTCTTAACCGGC 60.740 55.000 0.00 0.00 0.00 6.13
152 153 2.572191 TATGCACTCGTCTTAACCGG 57.428 50.000 0.00 0.00 0.00 5.28
153 154 6.408428 GTTTATTATGCACTCGTCTTAACCG 58.592 40.000 0.00 0.00 0.00 4.44
154 155 6.314400 TGGTTTATTATGCACTCGTCTTAACC 59.686 38.462 0.00 0.00 0.00 2.85
155 156 7.178074 GTGGTTTATTATGCACTCGTCTTAAC 58.822 38.462 0.00 0.00 0.00 2.01
156 157 6.314400 GGTGGTTTATTATGCACTCGTCTTAA 59.686 38.462 0.00 0.00 0.00 1.85
157 158 5.813672 GGTGGTTTATTATGCACTCGTCTTA 59.186 40.000 0.00 0.00 0.00 2.10
158 159 4.634443 GGTGGTTTATTATGCACTCGTCTT 59.366 41.667 0.00 0.00 0.00 3.01
159 160 4.189231 GGTGGTTTATTATGCACTCGTCT 58.811 43.478 0.00 0.00 0.00 4.18
160 161 3.000925 CGGTGGTTTATTATGCACTCGTC 59.999 47.826 0.00 0.00 0.00 4.20
161 162 2.933906 CGGTGGTTTATTATGCACTCGT 59.066 45.455 0.00 0.00 0.00 4.18
162 163 3.191669 TCGGTGGTTTATTATGCACTCG 58.808 45.455 0.00 0.00 0.00 4.18
163 164 8.542497 TTATATCGGTGGTTTATTATGCACTC 57.458 34.615 0.00 0.00 0.00 3.51
164 165 8.911918 TTTATATCGGTGGTTTATTATGCACT 57.088 30.769 0.00 0.00 0.00 4.40
174 175 9.184523 TCAATCTCAATTTTATATCGGTGGTTT 57.815 29.630 0.00 0.00 0.00 3.27
175 176 8.746052 TCAATCTCAATTTTATATCGGTGGTT 57.254 30.769 0.00 0.00 0.00 3.67
176 177 8.924511 ATCAATCTCAATTTTATATCGGTGGT 57.075 30.769 0.00 0.00 0.00 4.16
188 189 9.911788 ACCAAGATACACTATCAATCTCAATTT 57.088 29.630 0.00 0.00 37.65 1.82
189 190 9.334947 CACCAAGATACACTATCAATCTCAATT 57.665 33.333 0.00 0.00 37.65 2.32
190 191 8.708378 TCACCAAGATACACTATCAATCTCAAT 58.292 33.333 0.00 0.00 37.65 2.57
191 192 8.078060 TCACCAAGATACACTATCAATCTCAA 57.922 34.615 0.00 0.00 37.65 3.02
192 193 7.660030 TCACCAAGATACACTATCAATCTCA 57.340 36.000 0.00 0.00 37.65 3.27
193 194 7.117523 GCATCACCAAGATACACTATCAATCTC 59.882 40.741 0.00 0.00 37.65 2.75
194 195 6.933521 GCATCACCAAGATACACTATCAATCT 59.066 38.462 0.00 0.00 37.65 2.40
195 196 6.707608 TGCATCACCAAGATACACTATCAATC 59.292 38.462 0.00 0.00 37.65 2.67
196 197 6.594744 TGCATCACCAAGATACACTATCAAT 58.405 36.000 0.00 0.00 37.65 2.57
197 198 5.988287 TGCATCACCAAGATACACTATCAA 58.012 37.500 0.00 0.00 37.65 2.57
198 199 5.612725 TGCATCACCAAGATACACTATCA 57.387 39.130 0.00 0.00 37.65 2.15
199 200 5.817296 TGTTGCATCACCAAGATACACTATC 59.183 40.000 0.00 0.00 34.43 2.08
200 201 5.744171 TGTTGCATCACCAAGATACACTAT 58.256 37.500 0.00 0.00 34.43 2.12
201 202 5.159273 TGTTGCATCACCAAGATACACTA 57.841 39.130 0.00 0.00 34.43 2.74
202 203 4.019792 TGTTGCATCACCAAGATACACT 57.980 40.909 0.00 0.00 34.43 3.55
203 204 4.764679 TTGTTGCATCACCAAGATACAC 57.235 40.909 0.00 0.00 34.43 2.90
204 205 5.781210 TTTTGTTGCATCACCAAGATACA 57.219 34.783 0.00 0.00 34.43 2.29
205 206 6.089820 CACATTTTGTTGCATCACCAAGATAC 59.910 38.462 0.00 0.00 34.43 2.24
206 207 6.157904 CACATTTTGTTGCATCACCAAGATA 58.842 36.000 0.00 0.00 34.43 1.98
207 208 4.992319 CACATTTTGTTGCATCACCAAGAT 59.008 37.500 0.00 0.00 37.48 2.40
208 209 4.370049 CACATTTTGTTGCATCACCAAGA 58.630 39.130 0.00 0.00 0.00 3.02
209 210 3.495377 CCACATTTTGTTGCATCACCAAG 59.505 43.478 0.00 0.00 0.00 3.61
210 211 3.118482 ACCACATTTTGTTGCATCACCAA 60.118 39.130 0.00 0.00 0.00 3.67
211 212 2.433604 ACCACATTTTGTTGCATCACCA 59.566 40.909 0.00 0.00 0.00 4.17
212 213 3.059166 GACCACATTTTGTTGCATCACC 58.941 45.455 0.00 0.00 0.00 4.02
213 214 3.715495 TGACCACATTTTGTTGCATCAC 58.285 40.909 0.00 0.00 0.00 3.06
214 215 4.038883 TCATGACCACATTTTGTTGCATCA 59.961 37.500 0.00 0.00 34.15 3.07
215 216 4.558178 TCATGACCACATTTTGTTGCATC 58.442 39.130 0.00 0.00 34.15 3.91
216 217 4.603989 TCATGACCACATTTTGTTGCAT 57.396 36.364 0.00 0.00 34.15 3.96
217 218 4.603989 ATCATGACCACATTTTGTTGCA 57.396 36.364 0.00 0.00 34.15 4.08
218 219 7.331440 TCAATTATCATGACCACATTTTGTTGC 59.669 33.333 0.00 0.00 34.15 4.17
219 220 8.760103 TCAATTATCATGACCACATTTTGTTG 57.240 30.769 0.00 0.00 34.15 3.33
220 221 9.775854 TTTCAATTATCATGACCACATTTTGTT 57.224 25.926 0.00 0.00 34.15 2.83
221 222 9.947433 ATTTCAATTATCATGACCACATTTTGT 57.053 25.926 0.00 0.00 34.15 2.83
256 257 1.410517 TGCATTGCAACGGGAGAAAAA 59.589 42.857 9.33 0.00 34.76 1.94
257 258 1.035923 TGCATTGCAACGGGAGAAAA 58.964 45.000 9.33 0.00 34.76 2.29
258 259 0.313672 GTGCATTGCAACGGGAGAAA 59.686 50.000 13.94 0.00 41.47 2.52
259 260 1.851021 CGTGCATTGCAACGGGAGAA 61.851 55.000 13.94 0.00 41.47 2.87
260 261 2.324330 CGTGCATTGCAACGGGAGA 61.324 57.895 13.94 0.00 41.47 3.71
261 262 2.176546 CGTGCATTGCAACGGGAG 59.823 61.111 13.94 0.00 41.47 4.30
262 263 3.361158 CCGTGCATTGCAACGGGA 61.361 61.111 29.18 5.00 43.66 5.14
266 267 4.740431 GGGCCCGTGCATTGCAAC 62.740 66.667 13.94 7.00 41.47 4.17
267 268 4.992740 AGGGCCCGTGCATTGCAA 62.993 61.111 18.44 0.00 41.47 4.08
268 269 4.992740 AAGGGCCCGTGCATTGCA 62.993 61.111 18.44 7.38 40.13 4.08
269 270 3.238755 AAAAGGGCCCGTGCATTGC 62.239 57.895 18.44 0.46 40.13 3.56
270 271 1.374505 CAAAAGGGCCCGTGCATTG 60.375 57.895 18.44 11.32 40.13 2.82
271 272 3.059099 CAAAAGGGCCCGTGCATT 58.941 55.556 18.44 0.59 40.13 3.56
272 273 2.779742 TAGCAAAAGGGCCCGTGCAT 62.780 55.000 35.08 25.76 39.50 3.96
273 274 3.499461 TAGCAAAAGGGCCCGTGCA 62.499 57.895 35.08 23.79 39.50 4.57
274 275 2.675075 TAGCAAAAGGGCCCGTGC 60.675 61.111 30.21 30.21 37.26 5.34
275 276 0.035820 TACTAGCAAAAGGGCCCGTG 60.036 55.000 18.44 17.24 0.00 4.94
276 277 0.035725 GTACTAGCAAAAGGGCCCGT 60.036 55.000 18.44 11.44 0.00 5.28
277 278 0.035820 TGTACTAGCAAAAGGGCCCG 60.036 55.000 18.44 2.33 0.00 6.13
278 279 2.209690 TTGTACTAGCAAAAGGGCCC 57.790 50.000 16.46 16.46 0.00 5.80
279 280 2.159240 GCATTGTACTAGCAAAAGGGCC 60.159 50.000 0.00 0.00 31.63 5.80
280 281 2.491693 TGCATTGTACTAGCAAAAGGGC 59.508 45.455 5.24 0.00 34.97 5.19
281 282 4.989279 ATGCATTGTACTAGCAAAAGGG 57.011 40.909 10.56 0.00 42.15 3.95
282 283 8.755696 TTTTTATGCATTGTACTAGCAAAAGG 57.244 30.769 3.54 0.00 42.15 3.11
284 285 9.071221 CGATTTTTATGCATTGTACTAGCAAAA 57.929 29.630 3.54 0.00 42.15 2.44
285 286 8.240682 ACGATTTTTATGCATTGTACTAGCAAA 58.759 29.630 3.54 0.00 42.15 3.68
286 287 7.757526 ACGATTTTTATGCATTGTACTAGCAA 58.242 30.769 3.54 0.00 42.15 3.91
287 288 7.315247 ACGATTTTTATGCATTGTACTAGCA 57.685 32.000 3.54 9.27 43.14 3.49
288 289 8.548721 ACTACGATTTTTATGCATTGTACTAGC 58.451 33.333 3.54 0.00 0.00 3.42
290 291 9.589111 TGACTACGATTTTTATGCATTGTACTA 57.411 29.630 3.54 0.00 0.00 1.82
291 292 8.487313 TGACTACGATTTTTATGCATTGTACT 57.513 30.769 3.54 0.00 0.00 2.73
292 293 9.549509 TTTGACTACGATTTTTATGCATTGTAC 57.450 29.630 3.54 0.00 0.00 2.90
293 294 9.767684 CTTTGACTACGATTTTTATGCATTGTA 57.232 29.630 3.54 0.00 0.00 2.41
294 295 8.296713 ACTTTGACTACGATTTTTATGCATTGT 58.703 29.630 3.54 0.00 0.00 2.71
295 296 8.673626 ACTTTGACTACGATTTTTATGCATTG 57.326 30.769 3.54 0.00 0.00 2.82
296 297 9.128107 CAACTTTGACTACGATTTTTATGCATT 57.872 29.630 3.54 0.00 0.00 3.56
297 298 8.296713 ACAACTTTGACTACGATTTTTATGCAT 58.703 29.630 3.79 3.79 0.00 3.96
298 299 7.589587 CACAACTTTGACTACGATTTTTATGCA 59.410 33.333 0.00 0.00 0.00 3.96
299 300 7.409343 GCACAACTTTGACTACGATTTTTATGC 60.409 37.037 0.00 0.00 0.00 3.14
300 301 7.589587 TGCACAACTTTGACTACGATTTTTATG 59.410 33.333 0.00 0.00 0.00 1.90
301 302 7.644490 TGCACAACTTTGACTACGATTTTTAT 58.356 30.769 0.00 0.00 0.00 1.40
302 303 7.017498 TGCACAACTTTGACTACGATTTTTA 57.983 32.000 0.00 0.00 0.00 1.52
303 304 5.885881 TGCACAACTTTGACTACGATTTTT 58.114 33.333 0.00 0.00 0.00 1.94
304 305 5.493133 TGCACAACTTTGACTACGATTTT 57.507 34.783 0.00 0.00 0.00 1.82
305 306 5.270853 GTTGCACAACTTTGACTACGATTT 58.729 37.500 6.27 0.00 38.25 2.17
306 307 4.551990 CGTTGCACAACTTTGACTACGATT 60.552 41.667 11.44 0.00 38.26 3.34
307 308 3.059868 CGTTGCACAACTTTGACTACGAT 60.060 43.478 11.44 0.00 38.26 3.73
308 309 2.283086 CGTTGCACAACTTTGACTACGA 59.717 45.455 11.44 0.00 38.26 3.43
309 310 2.283086 TCGTTGCACAACTTTGACTACG 59.717 45.455 11.44 13.10 39.08 3.51
310 311 3.936902 TCGTTGCACAACTTTGACTAC 57.063 42.857 11.44 0.00 39.08 2.73
311 312 4.033587 GTCTTCGTTGCACAACTTTGACTA 59.966 41.667 11.44 0.00 39.08 2.59
312 313 3.006940 TCTTCGTTGCACAACTTTGACT 58.993 40.909 11.44 0.00 39.08 3.41
313 314 3.098636 GTCTTCGTTGCACAACTTTGAC 58.901 45.455 11.44 11.23 39.08 3.18
314 315 2.096819 GGTCTTCGTTGCACAACTTTGA 59.903 45.455 11.44 4.12 39.08 2.69
315 316 2.159448 TGGTCTTCGTTGCACAACTTTG 60.159 45.455 11.44 2.05 39.08 2.77
316 317 2.088423 TGGTCTTCGTTGCACAACTTT 58.912 42.857 11.44 0.00 39.08 2.66
317 318 1.670811 CTGGTCTTCGTTGCACAACTT 59.329 47.619 11.44 0.00 39.08 2.66
318 319 1.134521 TCTGGTCTTCGTTGCACAACT 60.135 47.619 11.44 0.00 39.08 3.16
319 320 1.295792 TCTGGTCTTCGTTGCACAAC 58.704 50.000 3.37 3.37 37.92 3.32
320 321 2.031258 TTCTGGTCTTCGTTGCACAA 57.969 45.000 0.00 0.00 0.00 3.33
321 322 2.031258 TTTCTGGTCTTCGTTGCACA 57.969 45.000 0.00 0.00 0.00 4.57
322 323 2.354821 ACTTTTCTGGTCTTCGTTGCAC 59.645 45.455 0.00 0.00 0.00 4.57
323 324 2.612212 GACTTTTCTGGTCTTCGTTGCA 59.388 45.455 0.00 0.00 0.00 4.08
324 325 2.612212 TGACTTTTCTGGTCTTCGTTGC 59.388 45.455 0.00 0.00 35.04 4.17
325 326 4.875544 TTGACTTTTCTGGTCTTCGTTG 57.124 40.909 0.00 0.00 35.04 4.10
326 327 4.095932 GGTTTGACTTTTCTGGTCTTCGTT 59.904 41.667 0.00 0.00 35.04 3.85
327 328 3.626217 GGTTTGACTTTTCTGGTCTTCGT 59.374 43.478 0.00 0.00 35.04 3.85
328 329 3.625764 TGGTTTGACTTTTCTGGTCTTCG 59.374 43.478 0.00 0.00 35.04 3.79
329 330 4.495844 CGTGGTTTGACTTTTCTGGTCTTC 60.496 45.833 0.00 0.00 35.04 2.87
330 331 3.377172 CGTGGTTTGACTTTTCTGGTCTT 59.623 43.478 0.00 0.00 35.04 3.01
331 332 2.943033 CGTGGTTTGACTTTTCTGGTCT 59.057 45.455 0.00 0.00 35.04 3.85
332 333 2.540973 GCGTGGTTTGACTTTTCTGGTC 60.541 50.000 0.00 0.00 0.00 4.02
333 334 1.404035 GCGTGGTTTGACTTTTCTGGT 59.596 47.619 0.00 0.00 0.00 4.00
334 335 1.269051 GGCGTGGTTTGACTTTTCTGG 60.269 52.381 0.00 0.00 0.00 3.86
335 336 1.676006 AGGCGTGGTTTGACTTTTCTG 59.324 47.619 0.00 0.00 0.00 3.02
336 337 2.052782 AGGCGTGGTTTGACTTTTCT 57.947 45.000 0.00 0.00 0.00 2.52
337 338 2.863401 AAGGCGTGGTTTGACTTTTC 57.137 45.000 0.00 0.00 27.45 2.29
338 339 6.584185 AATATAAGGCGTGGTTTGACTTTT 57.416 33.333 0.00 0.00 35.86 2.27
339 340 6.584185 AAATATAAGGCGTGGTTTGACTTT 57.416 33.333 0.00 0.00 35.86 2.66
340 341 6.386654 CAAAATATAAGGCGTGGTTTGACTT 58.613 36.000 0.00 0.00 38.50 3.01
341 342 5.105917 CCAAAATATAAGGCGTGGTTTGACT 60.106 40.000 0.00 0.00 0.00 3.41
342 343 5.099575 CCAAAATATAAGGCGTGGTTTGAC 58.900 41.667 0.00 0.00 0.00 3.18
343 344 4.767928 ACCAAAATATAAGGCGTGGTTTGA 59.232 37.500 0.00 0.00 35.89 2.69
344 345 5.066968 ACCAAAATATAAGGCGTGGTTTG 57.933 39.130 0.00 0.00 35.89 2.93
345 346 6.127563 CCTTACCAAAATATAAGGCGTGGTTT 60.128 38.462 0.00 0.00 40.71 3.27
346 347 5.358725 CCTTACCAAAATATAAGGCGTGGTT 59.641 40.000 0.00 0.00 40.71 3.67
347 348 4.885325 CCTTACCAAAATATAAGGCGTGGT 59.115 41.667 0.00 0.00 40.71 4.16
348 349 5.127491 TCCTTACCAAAATATAAGGCGTGG 58.873 41.667 5.35 0.00 44.89 4.94
349 350 5.238650 CCTCCTTACCAAAATATAAGGCGTG 59.761 44.000 5.35 0.01 44.89 5.34
350 351 5.374071 CCTCCTTACCAAAATATAAGGCGT 58.626 41.667 5.35 0.00 44.89 5.68
351 352 4.760204 CCCTCCTTACCAAAATATAAGGCG 59.240 45.833 5.35 0.05 44.89 5.52
352 353 5.948842 TCCCTCCTTACCAAAATATAAGGC 58.051 41.667 5.35 0.00 44.89 4.35
353 354 7.150447 ACTCCCTCCTTACCAAAATATAAGG 57.850 40.000 4.01 4.01 46.10 2.69
354 355 9.155785 TCTACTCCCTCCTTACCAAAATATAAG 57.844 37.037 0.00 0.00 0.00 1.73
355 356 9.510062 TTCTACTCCCTCCTTACCAAAATATAA 57.490 33.333 0.00 0.00 0.00 0.98
356 357 9.510062 TTTCTACTCCCTCCTTACCAAAATATA 57.490 33.333 0.00 0.00 0.00 0.86
357 358 8.401955 TTTCTACTCCCTCCTTACCAAAATAT 57.598 34.615 0.00 0.00 0.00 1.28
358 359 7.817910 TTTCTACTCCCTCCTTACCAAAATA 57.182 36.000 0.00 0.00 0.00 1.40
359 360 6.713731 TTTCTACTCCCTCCTTACCAAAAT 57.286 37.500 0.00 0.00 0.00 1.82
360 361 6.713731 ATTTCTACTCCCTCCTTACCAAAA 57.286 37.500 0.00 0.00 0.00 2.44
361 362 9.684702 ATATATTTCTACTCCCTCCTTACCAAA 57.315 33.333 0.00 0.00 0.00 3.28
420 421 9.665264 CTTTTTCTTGAAGCTACGTCTAATTTT 57.335 29.630 0.00 0.00 0.00 1.82
421 422 8.290325 CCTTTTTCTTGAAGCTACGTCTAATTT 58.710 33.333 0.00 0.00 0.00 1.82
541 544 7.719633 AGTTTCCTAAGAACTTGTGATTTGCTA 59.280 33.333 0.00 0.00 33.76 3.49
557 560 9.235537 GAAGCTACGTCTAATTAGTTTCCTAAG 57.764 37.037 12.19 4.16 36.63 2.18
640 645 3.498397 CGAGCGCTAATTATGGATGGTTT 59.502 43.478 11.50 0.00 0.00 3.27
770 776 8.367911 TGAAGAACAAGCTTTATAGAACAGAGA 58.632 33.333 0.00 0.00 0.00 3.10
786 792 9.294030 GCCAGATACATTTATTTGAAGAACAAG 57.706 33.333 0.00 0.00 39.77 3.16
793 799 7.611467 AGTCAGTGCCAGATACATTTATTTGAA 59.389 33.333 0.00 0.00 0.00 2.69
810 816 2.680312 TCTAGCATCAAGTCAGTGCC 57.320 50.000 0.00 0.00 39.62 5.01
838 844 9.521841 TCTCAGACTTATCTCTTGTCTCTTAAA 57.478 33.333 0.00 0.00 38.80 1.52
841 847 6.945435 TGTCTCAGACTTATCTCTTGTCTCTT 59.055 38.462 6.33 0.00 38.80 2.85
842 848 6.480763 TGTCTCAGACTTATCTCTTGTCTCT 58.519 40.000 6.33 0.00 38.80 3.10
843 849 6.751514 TGTCTCAGACTTATCTCTTGTCTC 57.248 41.667 6.33 0.00 38.80 3.36
844 850 7.232534 ACTTTGTCTCAGACTTATCTCTTGTCT 59.767 37.037 6.33 0.00 41.15 3.41
845 851 7.375053 ACTTTGTCTCAGACTTATCTCTTGTC 58.625 38.462 6.33 0.00 30.42 3.18
846 852 7.296628 ACTTTGTCTCAGACTTATCTCTTGT 57.703 36.000 6.33 0.00 30.42 3.16
847 853 8.600449 AAACTTTGTCTCAGACTTATCTCTTG 57.400 34.615 6.33 0.00 30.42 3.02
848 854 9.620259 AAAAACTTTGTCTCAGACTTATCTCTT 57.380 29.630 6.33 0.00 30.42 2.85
872 878 4.903045 ATACTCCCTCCGTTCAGAAAAA 57.097 40.909 0.00 0.00 0.00 1.94
876 882 9.848710 CTTATATATATACTCCCTCCGTTCAGA 57.151 37.037 1.73 0.00 0.00 3.27
877 883 9.069082 CCTTATATATATACTCCCTCCGTTCAG 57.931 40.741 1.73 0.00 0.00 3.02
878 884 8.784880 TCCTTATATATATACTCCCTCCGTTCA 58.215 37.037 1.73 0.00 0.00 3.18
879 885 9.065798 GTCCTTATATATATACTCCCTCCGTTC 57.934 40.741 1.73 0.00 0.00 3.95
880 886 8.789782 AGTCCTTATATATATACTCCCTCCGTT 58.210 37.037 1.73 0.00 0.00 4.44
901 907 5.568423 GCTGCTATAGTTATGCATGAGTCCT 60.568 44.000 10.16 0.00 36.07 3.85
1046 1079 3.060602 GGGAGATAAATGCTAGCACGAC 58.939 50.000 22.07 10.06 0.00 4.34
1060 1093 2.174854 TCTGTGGATCACGAGGGAGATA 59.825 50.000 0.00 0.00 37.14 1.98
1332 1380 1.077169 TCCTGCTTCCTGAGTACCTCA 59.923 52.381 0.00 0.00 38.25 3.86
1730 1811 1.214062 CAGAACGCGAAGAGGAGCT 59.786 57.895 15.93 0.00 0.00 4.09
1865 1952 2.125912 CGGACTTCCACTGCCTCG 60.126 66.667 0.00 0.00 35.14 4.63
1948 2035 3.699955 CTTCGATGGTGAGCGCCGA 62.700 63.158 2.29 0.00 0.00 5.54
2214 4041 1.899814 AGTTGAGTTGCGGGATGTCTA 59.100 47.619 0.00 0.00 0.00 2.59
2310 4137 2.542907 CCGGCAACAGTGGTGTCAC 61.543 63.158 14.21 1.64 43.93 3.67
2458 4285 2.743664 CAATTCATTCTCGGTGAGCACA 59.256 45.455 2.75 0.00 0.00 4.57
2640 4467 0.889186 CACCAGCGGCTTTGTTAGGT 60.889 55.000 0.00 0.00 0.00 3.08
2707 4534 7.811282 TGGCCAAAGGTCAATTAGATTAGATA 58.189 34.615 0.61 0.00 32.75 1.98
2727 4554 2.546899 ACATGTAACCTAGACTGGCCA 58.453 47.619 4.71 4.71 0.00 5.36
2732 4559 9.305555 TGAAACTAGTTACATGTAACCTAGACT 57.694 33.333 33.41 26.00 44.79 3.24
2810 4637 6.969993 TGTGCCTTATTTACCTCTTGTTTT 57.030 33.333 0.00 0.00 0.00 2.43
2963 4792 1.140161 CGGTGGCAATGCATCTTGG 59.860 57.895 7.79 0.00 0.00 3.61
2966 4795 0.179009 ATAGCGGTGGCAATGCATCT 60.179 50.000 7.79 0.00 43.41 2.90
3000 4829 0.108186 TACATGCAACTCTGGCCGAG 60.108 55.000 19.02 19.02 45.56 4.63
3189 5356 2.993899 AGTAAGATTTCTGTCAACCGCG 59.006 45.455 0.00 0.00 0.00 6.46
3195 5362 6.183361 TGGTTCCTTCAGTAAGATTTCTGTCA 60.183 38.462 0.06 0.00 34.37 3.58
3251 5418 4.281182 AGAACCAGTTCATAAGTGACTCGT 59.719 41.667 12.76 0.00 41.84 4.18
3276 5443 7.219484 ACTCAAATGGTTAGATTTCTTGTGG 57.781 36.000 0.00 0.00 0.00 4.17
3339 5507 5.292834 TGGTAGATACGAACAGTTCTCTACG 59.707 44.000 22.71 10.79 42.11 3.51
3347 5515 6.578944 TGCATAATTGGTAGATACGAACAGT 58.421 36.000 0.00 0.00 0.00 3.55
3352 5520 6.989759 ACACATTGCATAATTGGTAGATACGA 59.010 34.615 0.00 0.00 0.00 3.43
3446 5908 3.887110 TCCAAAGTCATCATGGCATCATC 59.113 43.478 0.00 0.00 34.13 2.92
3456 5918 5.747342 TGACATCATCATCCAAAGTCATCA 58.253 37.500 0.00 0.00 29.99 3.07
3477 5939 2.004733 CGCTTGCTGAAGTCATCATGA 58.995 47.619 0.00 0.00 37.44 3.07
3486 5948 0.386478 GCCAAACTCGCTTGCTGAAG 60.386 55.000 0.00 0.00 0.00 3.02
3487 5949 0.819259 AGCCAAACTCGCTTGCTGAA 60.819 50.000 0.00 0.00 30.57 3.02
3488 5950 0.819259 AAGCCAAACTCGCTTGCTGA 60.819 50.000 0.00 0.00 44.73 4.26
3489 5951 0.031178 AAAGCCAAACTCGCTTGCTG 59.969 50.000 0.00 0.00 45.69 4.41
3490 5952 1.266989 GTAAAGCCAAACTCGCTTGCT 59.733 47.619 0.00 0.00 45.69 3.91
3491 5953 1.266989 AGTAAAGCCAAACTCGCTTGC 59.733 47.619 0.00 0.00 45.69 4.01
3532 5994 6.856135 TGAAGTCATTATCTCATGCATCAC 57.144 37.500 0.00 0.00 0.00 3.06
3574 6036 6.425721 CGTGGTTTATTTCCTAACAAGAGTCA 59.574 38.462 0.00 0.00 0.00 3.41
3575 6037 6.426025 ACGTGGTTTATTTCCTAACAAGAGTC 59.574 38.462 0.00 0.00 0.00 3.36
3576 6038 6.204108 CACGTGGTTTATTTCCTAACAAGAGT 59.796 38.462 7.95 0.00 0.00 3.24
3577 6039 6.204108 ACACGTGGTTTATTTCCTAACAAGAG 59.796 38.462 21.57 0.00 0.00 2.85
3578 6040 6.017770 CACACGTGGTTTATTTCCTAACAAGA 60.018 38.462 21.57 0.00 0.00 3.02
3579 6041 6.140110 CACACGTGGTTTATTTCCTAACAAG 58.860 40.000 21.57 0.00 0.00 3.16
3580 6042 5.589452 ACACACGTGGTTTATTTCCTAACAA 59.411 36.000 21.57 0.00 34.19 2.83
3581 6043 5.124645 ACACACGTGGTTTATTTCCTAACA 58.875 37.500 21.57 0.00 34.19 2.41
3582 6044 5.236911 TGACACACGTGGTTTATTTCCTAAC 59.763 40.000 21.57 0.00 34.19 2.34
3583 6045 5.366460 TGACACACGTGGTTTATTTCCTAA 58.634 37.500 21.57 0.00 34.19 2.69
3584 6046 4.958509 TGACACACGTGGTTTATTTCCTA 58.041 39.130 21.57 0.00 34.19 2.94
3585 6047 3.811083 TGACACACGTGGTTTATTTCCT 58.189 40.909 21.57 0.00 34.19 3.36
3586 6048 4.472286 CATGACACACGTGGTTTATTTCC 58.528 43.478 21.57 2.24 34.19 3.13
3596 6058 0.304401 CACACACCATGACACACGTG 59.696 55.000 15.48 15.48 35.47 4.49
3597 6059 0.107897 ACACACACCATGACACACGT 60.108 50.000 0.00 0.00 0.00 4.49
3598 6060 1.792367 CTACACACACCATGACACACG 59.208 52.381 0.00 0.00 0.00 4.49
3599 6061 1.531149 GCTACACACACCATGACACAC 59.469 52.381 0.00 0.00 0.00 3.82
3600 6062 1.871822 CGCTACACACACCATGACACA 60.872 52.381 0.00 0.00 0.00 3.72
3601 6063 0.790207 CGCTACACACACCATGACAC 59.210 55.000 0.00 0.00 0.00 3.67
3602 6064 0.391228 ACGCTACACACACCATGACA 59.609 50.000 0.00 0.00 0.00 3.58
3603 6065 0.790207 CACGCTACACACACCATGAC 59.210 55.000 0.00 0.00 0.00 3.06
3604 6066 0.948623 GCACGCTACACACACCATGA 60.949 55.000 0.00 0.00 0.00 3.07
3605 6067 1.497278 GCACGCTACACACACCATG 59.503 57.895 0.00 0.00 0.00 3.66
3606 6068 2.027073 CGCACGCTACACACACCAT 61.027 57.895 0.00 0.00 0.00 3.55
3607 6069 2.660224 CGCACGCTACACACACCA 60.660 61.111 0.00 0.00 0.00 4.17
3608 6070 2.660552 ACGCACGCTACACACACC 60.661 61.111 0.00 0.00 0.00 4.16
3609 6071 2.544359 CACGCACGCTACACACAC 59.456 61.111 0.00 0.00 0.00 3.82
3610 6072 3.334751 GCACGCACGCTACACACA 61.335 61.111 0.00 0.00 0.00 3.72
3611 6073 4.409588 CGCACGCACGCTACACAC 62.410 66.667 0.00 0.00 0.00 3.82
3612 6074 4.934942 ACGCACGCACGCTACACA 62.935 61.111 0.00 0.00 36.19 3.72
3613 6075 4.409588 CACGCACGCACGCTACAC 62.410 66.667 0.00 0.00 36.19 2.90
3626 6088 4.011654 TCACACACATGCGCACGC 62.012 61.111 14.90 8.33 42.35 5.34
3627 6089 2.127646 GTCACACACATGCGCACG 60.128 61.111 14.90 7.29 0.00 5.34
3628 6090 2.127646 CGTCACACACATGCGCAC 60.128 61.111 14.90 0.00 0.00 5.34
3629 6091 2.587473 ACGTCACACACATGCGCA 60.587 55.556 14.96 14.96 0.00 6.09
3630 6092 2.127646 CACGTCACACACATGCGC 60.128 61.111 0.00 0.00 0.00 6.09
3631 6093 2.243957 ACCACGTCACACACATGCG 61.244 57.895 0.00 0.00 0.00 4.73
3632 6094 1.279539 CACCACGTCACACACATGC 59.720 57.895 0.00 0.00 0.00 4.06
3633 6095 0.813610 ACCACCACGTCACACACATG 60.814 55.000 0.00 0.00 0.00 3.21
3634 6096 0.531974 GACCACCACGTCACACACAT 60.532 55.000 0.00 0.00 32.74 3.21
3635 6097 1.153529 GACCACCACGTCACACACA 60.154 57.895 0.00 0.00 32.74 3.72
3636 6098 1.151777 CTGACCACCACGTCACACAC 61.152 60.000 0.00 0.00 37.85 3.82
3637 6099 1.142965 CTGACCACCACGTCACACA 59.857 57.895 0.00 0.00 37.85 3.72
3638 6100 2.244651 GCTGACCACCACGTCACAC 61.245 63.158 0.00 0.00 37.85 3.82
3639 6101 2.108157 GCTGACCACCACGTCACA 59.892 61.111 0.00 0.00 37.85 3.58
3640 6102 2.665185 GGCTGACCACCACGTCAC 60.665 66.667 0.00 0.00 37.85 3.67
3641 6103 4.293648 CGGCTGACCACCACGTCA 62.294 66.667 0.00 0.00 40.44 4.35
3663 6125 1.072648 ACGGAGGGAGTAGCTAGCTAG 59.927 57.143 24.78 16.84 0.00 3.42
3664 6126 1.138568 ACGGAGGGAGTAGCTAGCTA 58.861 55.000 20.67 20.67 0.00 3.32
3665 6127 0.259356 AACGGAGGGAGTAGCTAGCT 59.741 55.000 23.12 23.12 0.00 3.32
3666 6128 0.669619 GAACGGAGGGAGTAGCTAGC 59.330 60.000 6.62 6.62 0.00 3.42
3667 6129 1.320507 GGAACGGAGGGAGTAGCTAG 58.679 60.000 0.00 0.00 0.00 3.42
3668 6130 0.627451 TGGAACGGAGGGAGTAGCTA 59.373 55.000 0.00 0.00 0.00 3.32
3669 6131 0.252103 TTGGAACGGAGGGAGTAGCT 60.252 55.000 0.00 0.00 0.00 3.32
3670 6132 0.611714 TTTGGAACGGAGGGAGTAGC 59.388 55.000 0.00 0.00 0.00 3.58
3671 6133 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
3672 6134 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3673 6135 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3674 6136 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3675 6137 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3676 6138 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3677 6139 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
3678 6140 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
3679 6141 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
3680 6142 6.683974 ATTGAGTCATCTATTTTGGAACGG 57.316 37.500 0.00 0.00 0.00 4.44
3681 6143 8.883731 ACTAATTGAGTCATCTATTTTGGAACG 58.116 33.333 0.00 0.00 33.69 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.