Multiple sequence alignment - TraesCS2B01G184600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G184600 chr2B 100.000 4702 0 0 1 4702 159484810 159489511 0.000000e+00 8684
1 TraesCS2B01G184600 chr2B 95.798 119 5 0 1838 1956 382089402 382089284 4.800000e-45 193
2 TraesCS2B01G184600 chr2B 97.222 108 1 2 3085 3191 403102746 403102852 1.040000e-41 182
3 TraesCS2B01G184600 chr2B 97.196 107 2 1 3085 3191 584129402 584129507 3.740000e-41 180
4 TraesCS2B01G184600 chr2B 92.437 119 7 2 3068 3184 544825083 544825201 8.090000e-38 169
5 TraesCS2B01G184600 chr2D 91.060 1868 87 30 1 1842 110060644 110062457 0.000000e+00 2451
6 TraesCS2B01G184600 chr2D 86.352 1524 124 50 3218 4699 110063664 110065145 0.000000e+00 1585
7 TraesCS2B01G184600 chr2D 89.344 1173 69 17 1951 3075 110062450 110063614 0.000000e+00 1423
8 TraesCS2B01G184600 chr2D 94.958 119 6 0 1838 1956 501703858 501703976 2.230000e-43 187
9 TraesCS2B01G184600 chr2A 89.831 1770 94 41 113 1842 105633784 105635507 0.000000e+00 2193
10 TraesCS2B01G184600 chr2A 90.731 766 46 13 3180 3933 105637167 105637919 0.000000e+00 998
11 TraesCS2B01G184600 chr2A 93.694 444 18 7 4263 4699 105638285 105638725 0.000000e+00 656
12 TraesCS2B01G184600 chr2A 89.703 505 37 8 1951 2445 105635500 105635999 8.590000e-177 630
13 TraesCS2B01G184600 chr2A 91.689 373 25 3 2441 2809 105636107 105636477 3.250000e-141 512
14 TraesCS2B01G184600 chr2A 96.441 281 10 0 2806 3086 105636888 105637168 9.220000e-127 464
15 TraesCS2B01G184600 chr2A 92.188 128 10 0 1838 1965 389220808 389220935 1.040000e-41 182
16 TraesCS2B01G184600 chr2A 98.214 56 1 0 5 60 105633416 105633471 1.080000e-16 99
17 TraesCS2B01G184600 chr3B 93.798 129 8 0 1836 1964 637086449 637086321 1.340000e-45 195
18 TraesCS2B01G184600 chr5D 93.651 126 8 0 1838 1963 566048406 566048281 6.210000e-44 189
19 TraesCS2B01G184600 chr1B 95.726 117 5 0 1840 1956 67115767 67115883 6.210000e-44 189
20 TraesCS2B01G184600 chrUn 94.215 121 7 0 1840 1960 87827393 87827513 8.030000e-43 185
21 TraesCS2B01G184600 chr4A 94.215 121 7 0 1840 1960 658949231 658949111 8.030000e-43 185
22 TraesCS2B01G184600 chr6B 92.248 129 10 0 1840 1968 36133873 36133745 2.890000e-42 183
23 TraesCS2B01G184600 chr5B 99.020 102 1 0 3083 3184 701174659 701174760 2.890000e-42 183
24 TraesCS2B01G184600 chr7B 98.095 105 1 1 3085 3189 421056967 421056864 1.040000e-41 182
25 TraesCS2B01G184600 chr4B 97.143 105 3 0 3085 3189 32922794 32922898 1.340000e-40 178
26 TraesCS2B01G184600 chr4B 95.455 110 5 0 3075 3184 538218856 538218747 4.840000e-40 176
27 TraesCS2B01G184600 chr3D 95.536 112 2 3 3085 3194 23081175 23081285 4.840000e-40 176
28 TraesCS2B01G184600 chr1A 94.783 115 2 3 3071 3184 502679869 502679758 4.840000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G184600 chr2B 159484810 159489511 4701 False 8684.000000 8684 100.000000 1 4702 1 chr2B.!!$F1 4701
1 TraesCS2B01G184600 chr2D 110060644 110065145 4501 False 1819.666667 2451 88.918667 1 4699 3 chr2D.!!$F2 4698
2 TraesCS2B01G184600 chr2A 105633416 105638725 5309 False 793.142857 2193 92.900429 5 4699 7 chr2A.!!$F2 4694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 365 0.609131 ACACATACTGCCAAGCCCAC 60.609 55.0 0.0 0.0 0.0 4.61 F
626 928 0.657840 GCGCCGCTGTAGATTTTGAT 59.342 50.0 0.0 0.0 0.0 2.57 F
1852 2180 0.042881 AGGTTGTACTCCCTCCCTCC 59.957 60.0 0.0 0.0 0.0 4.30 F
3096 3978 0.106819 TACCTGCTACTCCCTCCGTC 60.107 60.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 1778 0.103208 GACCACTACTCCAGGCATCG 59.897 60.0 0.00 0.0 0.00 3.84 R
1938 2266 0.337082 TGTACTCCCTCCATCCGGAA 59.663 55.0 9.01 0.0 42.21 4.30 R
3566 4456 0.535102 CCTGCCTTGAAGGTGTCGTT 60.535 55.0 13.58 0.0 37.80 3.85 R
4121 5089 0.107263 TGTCTGTGCCTTGCTTGTGA 60.107 50.0 0.00 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.935481 CCCAAGCCCACCCAGAGA 60.935 66.667 0.00 0.00 0.00 3.10
60 61 0.987294 CCCACCCAGAGACATCAACT 59.013 55.000 0.00 0.00 0.00 3.16
61 62 1.339438 CCCACCCAGAGACATCAACTG 60.339 57.143 0.00 0.00 0.00 3.16
63 64 2.567169 CCACCCAGAGACATCAACTGTA 59.433 50.000 0.00 0.00 38.54 2.74
64 65 3.589988 CACCCAGAGACATCAACTGTAC 58.410 50.000 0.00 0.00 38.54 2.90
65 66 3.006859 CACCCAGAGACATCAACTGTACA 59.993 47.826 0.00 0.00 38.54 2.90
93 365 0.609131 ACACATACTGCCAAGCCCAC 60.609 55.000 0.00 0.00 0.00 4.61
124 396 1.696336 TCCTAGGAGAAGCATCATGGC 59.304 52.381 7.62 0.00 0.00 4.40
151 423 2.267961 GTACTTGACCTGGCCCGG 59.732 66.667 12.40 12.40 0.00 5.73
152 424 3.712907 TACTTGACCTGGCCCGGC 61.713 66.667 14.06 0.00 0.00 6.13
236 512 4.473520 CCCGAGCCGAGCACCAAT 62.474 66.667 0.00 0.00 0.00 3.16
269 545 2.607892 GCGTGACCTGCTTCGCTTT 61.608 57.895 0.00 0.00 44.28 3.51
270 546 1.205064 CGTGACCTGCTTCGCTTTG 59.795 57.895 0.00 0.00 0.00 2.77
307 583 2.177734 GGACGAGGGTTTCTAGAAGGT 58.822 52.381 5.12 0.00 0.00 3.50
345 626 1.518903 GGTGAACCTGCTGCTCAACC 61.519 60.000 0.00 0.00 0.00 3.77
366 647 3.577848 CCTCTCATCATAGCCTAGCAAGT 59.422 47.826 0.00 0.00 0.00 3.16
379 660 5.105351 AGCCTAGCAAGTTTTTGAACTTTGT 60.105 36.000 2.02 0.00 40.74 2.83
393 674 1.492319 CTTTGTCGTGCGTTTCGGGA 61.492 55.000 0.00 0.00 0.00 5.14
439 720 1.584495 CTTTTGGGCGCCAGTAACC 59.416 57.895 30.85 10.31 33.81 2.85
465 749 2.435938 TCGCCGTCCAATCAAGCC 60.436 61.111 0.00 0.00 0.00 4.35
473 757 0.887933 TCCAATCAAGCCGCTTTTCC 59.112 50.000 1.86 0.00 0.00 3.13
475 759 1.135286 CCAATCAAGCCGCTTTTCCTC 60.135 52.381 1.86 0.00 0.00 3.71
476 760 0.804989 AATCAAGCCGCTTTTCCTCG 59.195 50.000 1.86 0.00 0.00 4.63
557 841 2.890311 AGGAGATGCGATCGATTTCTCT 59.110 45.455 26.92 17.66 34.58 3.10
562 846 6.348622 GGAGATGCGATCGATTTCTCTACTTA 60.349 42.308 26.92 0.00 34.58 2.24
569 853 8.328864 GCGATCGATTTCTCTACTTATTTTTGT 58.671 33.333 21.57 0.00 0.00 2.83
597 892 2.381752 TTCTAGATCCTGATCCGCCA 57.618 50.000 3.55 0.00 38.58 5.69
623 925 2.461110 CGGCGCCGCTGTAGATTTT 61.461 57.895 38.48 0.00 0.00 1.82
626 928 0.657840 GCGCCGCTGTAGATTTTGAT 59.342 50.000 0.00 0.00 0.00 2.57
633 935 5.333645 GCCGCTGTAGATTTTGATATCACTG 60.334 44.000 4.48 0.00 0.00 3.66
644 946 2.899900 TGATATCACTGCTATCCCGCTT 59.100 45.455 0.00 0.00 0.00 4.68
659 961 7.754475 GCTATCCCGCTTAATAAACTAGTACTC 59.246 40.741 0.00 0.00 0.00 2.59
660 962 7.836479 ATCCCGCTTAATAAACTAGTACTCT 57.164 36.000 0.00 0.00 0.00 3.24
666 968 9.435802 CGCTTAATAAACTAGTACTCTACTGTG 57.564 37.037 0.00 0.00 39.81 3.66
676 978 6.546428 AGTACTCTACTGTGTATGCCATTT 57.454 37.500 0.00 0.00 37.69 2.32
940 1249 1.121378 TTTTGTTTTCCCCGGAACCC 58.879 50.000 0.73 0.00 33.41 4.11
973 1284 4.148825 AAATCTCGCCGCGGCTCT 62.149 61.111 43.60 24.31 39.32 4.09
1101 1420 2.401592 CTCTCGTCCTCGTCGCTG 59.598 66.667 0.00 0.00 38.33 5.18
1402 1727 3.815856 TTAAGCTGCTCTCCAGATCTG 57.184 47.619 16.24 16.24 44.64 2.90
1453 1778 3.309954 GCTGTCCGATGAAGTATTGAACC 59.690 47.826 0.00 0.00 0.00 3.62
1522 1850 7.219484 AGCTTGGTTAATATTGTGCATATCC 57.781 36.000 0.00 0.00 0.00 2.59
1550 1878 6.776744 TGCTCTTGATCTCTATAATGCCATT 58.223 36.000 0.00 0.00 0.00 3.16
1651 1979 3.519510 CTCTGGATTGTGTTCTTAGGGGA 59.480 47.826 0.00 0.00 0.00 4.81
1730 2058 3.095163 CCTGGGCCTCTGCATCCT 61.095 66.667 4.53 0.00 40.13 3.24
1757 2085 4.380531 TGCACACAGCCTAATTAGCTATC 58.619 43.478 6.99 0.00 44.83 2.08
1786 2114 5.359860 CAGACTGTCATACTACATACACCCA 59.640 44.000 10.88 0.00 0.00 4.51
1796 2124 4.708421 ACTACATACACCCACAATACGAGT 59.292 41.667 0.00 0.00 0.00 4.18
1804 2132 2.621338 CCACAATACGAGTGCATGACT 58.379 47.619 0.00 0.00 37.76 3.41
1805 2133 3.002791 CCACAATACGAGTGCATGACTT 58.997 45.455 0.00 0.00 33.83 3.01
1806 2134 4.180817 CCACAATACGAGTGCATGACTTA 58.819 43.478 0.00 0.00 33.83 2.24
1836 2164 2.103263 GACAGTGAAGGTTGTCTGAGGT 59.897 50.000 0.00 0.00 40.35 3.85
1838 2166 2.874701 CAGTGAAGGTTGTCTGAGGTTG 59.125 50.000 0.00 0.00 0.00 3.77
1839 2167 2.505819 AGTGAAGGTTGTCTGAGGTTGT 59.494 45.455 0.00 0.00 0.00 3.32
1840 2168 3.709653 AGTGAAGGTTGTCTGAGGTTGTA 59.290 43.478 0.00 0.00 0.00 2.41
1841 2169 3.808174 GTGAAGGTTGTCTGAGGTTGTAC 59.192 47.826 0.00 0.00 0.00 2.90
1842 2170 3.709653 TGAAGGTTGTCTGAGGTTGTACT 59.290 43.478 0.00 0.00 0.00 2.73
1843 2171 4.202223 TGAAGGTTGTCTGAGGTTGTACTC 60.202 45.833 0.00 0.00 37.99 2.59
1844 2172 2.633481 AGGTTGTCTGAGGTTGTACTCC 59.367 50.000 0.00 0.00 36.66 3.85
1845 2173 2.289506 GGTTGTCTGAGGTTGTACTCCC 60.290 54.545 0.00 0.00 36.66 4.30
1846 2174 2.633481 GTTGTCTGAGGTTGTACTCCCT 59.367 50.000 3.86 3.86 36.66 4.20
1847 2175 2.526432 TGTCTGAGGTTGTACTCCCTC 58.474 52.381 18.93 18.93 46.20 4.30
1848 2176 1.826096 GTCTGAGGTTGTACTCCCTCC 59.174 57.143 21.39 8.69 45.56 4.30
1849 2177 1.196012 CTGAGGTTGTACTCCCTCCC 58.804 60.000 21.39 6.20 45.56 4.30
1850 2178 0.790993 TGAGGTTGTACTCCCTCCCT 59.209 55.000 21.39 6.98 45.56 4.20
1851 2179 1.273098 TGAGGTTGTACTCCCTCCCTC 60.273 57.143 21.39 13.83 45.56 4.30
1852 2180 0.042881 AGGTTGTACTCCCTCCCTCC 59.957 60.000 0.00 0.00 0.00 4.30
1853 2181 1.328430 GGTTGTACTCCCTCCCTCCG 61.328 65.000 0.00 0.00 0.00 4.63
1854 2182 1.001248 TTGTACTCCCTCCCTCCGG 59.999 63.158 0.00 0.00 0.00 5.14
1855 2183 1.512201 TTGTACTCCCTCCCTCCGGA 61.512 60.000 2.93 2.93 36.45 5.14
1856 2184 1.309006 GTACTCCCTCCCTCCGGAA 59.691 63.158 5.23 0.00 37.86 4.30
1857 2185 0.325016 GTACTCCCTCCCTCCGGAAA 60.325 60.000 5.23 0.00 37.86 3.13
1858 2186 0.640495 TACTCCCTCCCTCCGGAAAT 59.360 55.000 5.23 0.00 37.86 2.17
1859 2187 0.640495 ACTCCCTCCCTCCGGAAATA 59.360 55.000 5.23 0.00 37.86 1.40
1860 2188 1.049402 CTCCCTCCCTCCGGAAATAC 58.951 60.000 5.23 0.00 37.86 1.89
1861 2189 0.640495 TCCCTCCCTCCGGAAATACT 59.360 55.000 5.23 0.00 37.86 2.12
1862 2190 1.009183 TCCCTCCCTCCGGAAATACTT 59.991 52.381 5.23 0.00 37.86 2.24
1863 2191 1.141053 CCCTCCCTCCGGAAATACTTG 59.859 57.143 5.23 0.00 37.86 3.16
1864 2192 1.838077 CCTCCCTCCGGAAATACTTGT 59.162 52.381 5.23 0.00 37.86 3.16
1865 2193 2.158943 CCTCCCTCCGGAAATACTTGTC 60.159 54.545 5.23 0.00 37.86 3.18
1866 2194 1.479323 TCCCTCCGGAAATACTTGTCG 59.521 52.381 5.23 0.00 34.19 4.35
1867 2195 1.287425 CCTCCGGAAATACTTGTCGC 58.713 55.000 5.23 0.00 0.00 5.19
1868 2196 0.921347 CTCCGGAAATACTTGTCGCG 59.079 55.000 5.23 0.00 0.00 5.87
1869 2197 0.458889 TCCGGAAATACTTGTCGCGG 60.459 55.000 6.13 0.00 0.00 6.46
1870 2198 0.458889 CCGGAAATACTTGTCGCGGA 60.459 55.000 6.13 0.00 32.57 5.54
1871 2199 1.352114 CGGAAATACTTGTCGCGGAA 58.648 50.000 6.13 0.00 0.00 4.30
1872 2200 1.727880 CGGAAATACTTGTCGCGGAAA 59.272 47.619 6.13 0.00 0.00 3.13
1873 2201 2.350498 CGGAAATACTTGTCGCGGAAAT 59.650 45.455 6.13 0.00 0.00 2.17
1874 2202 3.680789 GGAAATACTTGTCGCGGAAATG 58.319 45.455 6.13 0.00 0.00 2.32
1875 2203 2.825086 AATACTTGTCGCGGAAATGC 57.175 45.000 6.13 0.00 0.00 3.56
1876 2204 1.732941 ATACTTGTCGCGGAAATGCA 58.267 45.000 6.13 0.00 34.15 3.96
1877 2205 1.732941 TACTTGTCGCGGAAATGCAT 58.267 45.000 6.13 0.00 34.15 3.96
1878 2206 1.732941 ACTTGTCGCGGAAATGCATA 58.267 45.000 6.13 0.00 34.15 3.14
1879 2207 2.080693 ACTTGTCGCGGAAATGCATAA 58.919 42.857 6.13 0.00 34.15 1.90
1880 2208 2.486203 ACTTGTCGCGGAAATGCATAAA 59.514 40.909 6.13 0.00 34.15 1.40
1881 2209 3.057876 ACTTGTCGCGGAAATGCATAAAA 60.058 39.130 6.13 0.00 34.15 1.52
1882 2210 3.560902 TGTCGCGGAAATGCATAAAAA 57.439 38.095 6.13 0.00 34.15 1.94
1883 2211 4.103365 TGTCGCGGAAATGCATAAAAAT 57.897 36.364 6.13 0.00 34.15 1.82
1884 2212 3.856521 TGTCGCGGAAATGCATAAAAATG 59.143 39.130 6.13 0.00 34.15 2.32
1885 2213 3.242712 GTCGCGGAAATGCATAAAAATGG 59.757 43.478 6.13 0.00 34.15 3.16
1886 2214 3.129462 TCGCGGAAATGCATAAAAATGGA 59.871 39.130 6.13 0.00 34.15 3.41
1887 2215 4.050553 CGCGGAAATGCATAAAAATGGAT 58.949 39.130 0.00 0.00 33.93 3.41
1888 2216 4.084952 CGCGGAAATGCATAAAAATGGATG 60.085 41.667 0.00 0.00 32.82 3.51
1889 2217 4.810491 GCGGAAATGCATAAAAATGGATGT 59.190 37.500 0.00 0.00 32.82 3.06
1890 2218 5.982516 GCGGAAATGCATAAAAATGGATGTA 59.017 36.000 0.00 0.00 32.82 2.29
1891 2219 6.646240 GCGGAAATGCATAAAAATGGATGTAT 59.354 34.615 0.00 0.00 32.82 2.29
1892 2220 7.148755 GCGGAAATGCATAAAAATGGATGTATC 60.149 37.037 0.00 0.00 32.82 2.24
1893 2221 8.084073 CGGAAATGCATAAAAATGGATGTATCT 58.916 33.333 0.00 0.00 32.82 1.98
1899 2227 9.066892 TGCATAAAAATGGATGTATCTAGAACC 57.933 33.333 0.00 0.00 0.00 3.62
1900 2228 9.066892 GCATAAAAATGGATGTATCTAGAACCA 57.933 33.333 0.00 2.69 0.00 3.67
1921 2249 9.778741 GAACCAAAATACATCTAGATACATCCA 57.221 33.333 4.54 0.00 0.00 3.41
1929 2257 6.929625 ACATCTAGATACATCCATTTCTCCG 58.070 40.000 4.54 0.00 0.00 4.63
1930 2258 6.721668 ACATCTAGATACATCCATTTCTCCGA 59.278 38.462 4.54 0.00 0.00 4.55
1931 2259 6.576662 TCTAGATACATCCATTTCTCCGAC 57.423 41.667 0.00 0.00 0.00 4.79
1932 2260 6.068670 TCTAGATACATCCATTTCTCCGACA 58.931 40.000 0.00 0.00 0.00 4.35
1933 2261 5.614324 AGATACATCCATTTCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
1934 2262 5.605534 AGATACATCCATTTCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
1935 2263 3.703001 ACATCCATTTCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
1936 2264 4.819105 ACATCCATTTCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
1937 2265 5.359194 ACATCCATTTCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
1938 2266 5.745227 ACATCCATTTCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
1939 2267 6.180472 ACATCCATTTCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
1940 2268 6.316390 ACATCCATTTCTCCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
1941 2269 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
1942 2270 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
1943 2271 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
1944 2272 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
1945 2273 3.028850 TCTCCGACAAGTATTTCCGGAT 58.971 45.455 4.15 0.00 46.53 4.18
1946 2274 3.123804 CTCCGACAAGTATTTCCGGATG 58.876 50.000 4.15 0.97 46.53 3.51
1947 2275 2.159014 TCCGACAAGTATTTCCGGATGG 60.159 50.000 4.15 0.00 43.47 3.51
1948 2276 2.159014 CCGACAAGTATTTCCGGATGGA 60.159 50.000 4.15 0.00 44.61 3.41
2025 2353 6.483640 GGATGGTGTCATCTATGTTTCCTAAC 59.516 42.308 6.37 0.00 46.70 2.34
2026 2354 7.047891 GATGGTGTCATCTATGTTTCCTAACA 58.952 38.462 0.00 0.00 44.90 2.41
2059 2395 5.360999 CAGACTATCTGTGGACTATGGTCAA 59.639 44.000 11.67 0.00 40.45 3.18
2115 2451 7.041644 TGTGGCAGTTTATGTTGTAGTCTTTAC 60.042 37.037 0.00 0.00 0.00 2.01
2117 2453 7.172532 TGGCAGTTTATGTTGTAGTCTTTACTG 59.827 37.037 0.00 0.00 36.36 2.74
2129 2467 8.263940 TGTAGTCTTTACTGATTTAATGCCAC 57.736 34.615 0.00 0.00 36.36 5.01
2225 2563 6.647067 GCATGACTTAGTTCTGACAGTAAAGT 59.353 38.462 1.59 8.00 0.00 2.66
2227 2565 9.692749 CATGACTTAGTTCTGACAGTAAAGTTA 57.307 33.333 1.59 5.83 0.00 2.24
2285 2624 7.065120 ACCAAGTCATCCAATTTTCATTTGA 57.935 32.000 0.00 0.00 0.00 2.69
2295 2634 8.421249 TCCAATTTTCATTTGAGGATAGTGTT 57.579 30.769 0.00 0.00 0.00 3.32
2317 2657 7.985184 GTGTTATCTATGTTCCATGTCCTAACA 59.015 37.037 0.00 0.00 40.38 2.41
2326 2666 6.429692 TGTTCCATGTCCTAACACAACTTATG 59.570 38.462 0.00 0.00 38.48 1.90
2336 2676 8.812972 TCCTAACACAACTTATGAGACTGTATT 58.187 33.333 0.00 0.00 0.00 1.89
2374 2714 6.354794 AGTACAGTCCATTAGTTTACTGCA 57.645 37.500 0.00 0.00 42.44 4.41
2469 2921 5.244755 TGTCATACTGCATGCTAGTTCAAA 58.755 37.500 20.33 6.15 34.35 2.69
2499 2955 4.795268 TCAGTAGTTCAGTTGTAGCTTCG 58.205 43.478 0.00 0.00 0.00 3.79
2505 2961 1.001974 TCAGTTGTAGCTTCGGTGCAT 59.998 47.619 0.00 0.00 34.99 3.96
2542 2998 4.278975 ACCTCTTTCTTGTTGCTAGGAG 57.721 45.455 0.00 0.00 0.00 3.69
2578 3034 7.307131 TGATTGATCAGATAGGCATTACTCA 57.693 36.000 0.00 0.00 32.11 3.41
2581 3037 9.228949 GATTGATCAGATAGGCATTACTCATTT 57.771 33.333 0.00 0.00 0.00 2.32
2590 3046 4.831155 AGGCATTACTCATTTGATCATGGG 59.169 41.667 0.00 0.00 0.00 4.00
2613 3069 5.860716 GGCTTTTTGTTTGCTCTTCTATCTG 59.139 40.000 0.00 0.00 0.00 2.90
2617 3073 6.560253 TTTGTTTGCTCTTCTATCTGGAAC 57.440 37.500 0.00 0.00 0.00 3.62
2667 3123 6.928492 TCTGGTTCATTGCCAAATAGTTTTTC 59.072 34.615 0.00 0.00 35.32 2.29
2958 3828 7.151976 GGTACAGTTGCAATTTTTAGATTGGT 58.848 34.615 0.59 0.00 37.47 3.67
2994 3864 1.980765 TCAACAGCAGGATCTCCAGTT 59.019 47.619 0.00 0.00 38.89 3.16
3002 3872 3.371380 GCAGGATCTCCAGTTTCAGGATT 60.371 47.826 0.00 0.00 38.89 3.01
3015 3885 7.382218 CCAGTTTCAGGATTTAAACACATTCAC 59.618 37.037 0.00 0.00 37.92 3.18
3029 3899 5.494724 ACACATTCACATAAGCAGAGACAT 58.505 37.500 0.00 0.00 0.00 3.06
3046 3916 7.148689 GCAGAGACATTTTTATCTTTTTGCAGG 60.149 37.037 0.00 0.00 32.19 4.85
3066 3936 1.883084 CGAGGGGTATGCGAGCAAC 60.883 63.158 0.57 2.18 0.00 4.17
3086 3968 4.323553 ACCGATTCTCATTACCTGCTAC 57.676 45.455 0.00 0.00 0.00 3.58
3087 3969 3.961408 ACCGATTCTCATTACCTGCTACT 59.039 43.478 0.00 0.00 0.00 2.57
3088 3970 4.038162 ACCGATTCTCATTACCTGCTACTC 59.962 45.833 0.00 0.00 0.00 2.59
3089 3971 4.551388 CGATTCTCATTACCTGCTACTCC 58.449 47.826 0.00 0.00 0.00 3.85
3090 3972 4.559704 CGATTCTCATTACCTGCTACTCCC 60.560 50.000 0.00 0.00 0.00 4.30
3091 3973 3.689872 TCTCATTACCTGCTACTCCCT 57.310 47.619 0.00 0.00 0.00 4.20
3092 3974 3.567397 TCTCATTACCTGCTACTCCCTC 58.433 50.000 0.00 0.00 0.00 4.30
3093 3975 2.630580 CTCATTACCTGCTACTCCCTCC 59.369 54.545 0.00 0.00 0.00 4.30
3094 3976 1.341531 CATTACCTGCTACTCCCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
3095 3977 0.333993 TTACCTGCTACTCCCTCCGT 59.666 55.000 0.00 0.00 0.00 4.69
3096 3978 0.106819 TACCTGCTACTCCCTCCGTC 60.107 60.000 0.00 0.00 0.00 4.79
3097 3979 2.128507 CCTGCTACTCCCTCCGTCC 61.129 68.421 0.00 0.00 0.00 4.79
3098 3980 2.043248 TGCTACTCCCTCCGTCCC 60.043 66.667 0.00 0.00 0.00 4.46
3099 3981 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
3100 3982 1.684734 GCTACTCCCTCCGTCCCAA 60.685 63.158 0.00 0.00 0.00 4.12
3101 3983 1.262640 GCTACTCCCTCCGTCCCAAA 61.263 60.000 0.00 0.00 0.00 3.28
3102 3984 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
3103 3985 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
3104 3986 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3105 3987 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3106 3988 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3107 3989 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3108 3990 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3109 3991 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3110 3992 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3111 3993 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3112 3994 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3113 3995 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
3114 3996 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
3115 3997 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
3116 3998 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
3117 3999 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
3118 4000 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
3119 4001 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
3120 4002 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
3121 4003 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
3122 4004 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
3123 4005 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
3124 4006 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
3125 4007 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
3126 4008 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
3127 4009 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
3128 4010 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
3129 4011 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
3130 4012 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
3131 4013 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
3132 4014 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
3157 4039 8.632906 ACTAGAGCTAGTACAAAGTTAAGACA 57.367 34.615 8.35 0.00 43.98 3.41
3158 4040 8.513774 ACTAGAGCTAGTACAAAGTTAAGACAC 58.486 37.037 8.35 0.00 43.98 3.67
3159 4041 7.527568 AGAGCTAGTACAAAGTTAAGACACT 57.472 36.000 0.00 0.00 0.00 3.55
3160 4042 7.953752 AGAGCTAGTACAAAGTTAAGACACTT 58.046 34.615 0.00 0.00 38.74 3.16
3161 4043 9.075678 AGAGCTAGTACAAAGTTAAGACACTTA 57.924 33.333 0.00 0.00 35.87 2.24
3162 4044 9.857957 GAGCTAGTACAAAGTTAAGACACTTAT 57.142 33.333 0.00 0.00 35.87 1.73
3168 4050 9.673454 GTACAAAGTTAAGACACTTATTTTGGG 57.327 33.333 19.96 8.06 35.87 4.12
3169 4051 8.528044 ACAAAGTTAAGACACTTATTTTGGGA 57.472 30.769 19.96 0.00 35.87 4.37
3170 4052 8.410912 ACAAAGTTAAGACACTTATTTTGGGAC 58.589 33.333 19.96 6.58 35.87 4.46
3171 4053 6.796705 AGTTAAGACACTTATTTTGGGACG 57.203 37.500 0.00 0.00 0.00 4.79
3172 4054 5.704053 AGTTAAGACACTTATTTTGGGACGG 59.296 40.000 0.00 0.00 0.00 4.79
3173 4055 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
3174 4056 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3175 4057 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3176 4058 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3177 4059 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3178 4060 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3179 4061 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3180 4062 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3214 4096 9.547753 TCTCCATTTACTCATAACTTGCTATTC 57.452 33.333 0.00 0.00 0.00 1.75
3215 4097 9.553064 CTCCATTTACTCATAACTTGCTATTCT 57.447 33.333 0.00 0.00 0.00 2.40
3273 4155 1.035932 GCATGTTCATGCAGCCTCCT 61.036 55.000 26.29 0.00 46.25 3.69
3355 4237 9.780186 GTTTGGTGACTAGCCTAATATATTTCT 57.220 33.333 2.68 2.16 0.00 2.52
3395 4285 8.662781 TTTATCATCAGAAAGTATAGTGTGCC 57.337 34.615 0.00 0.00 0.00 5.01
3421 4311 5.673337 TGCAGTAACATCTGTTTTGTCTC 57.327 39.130 0.20 0.00 39.31 3.36
3523 4413 1.524621 CAGATGGTGCCGTCATCCC 60.525 63.158 12.43 0.00 41.25 3.85
3532 4422 0.394352 GCCGTCATCCCAGGAAACAT 60.394 55.000 0.00 0.00 0.00 2.71
3579 4469 1.292061 CGGTTCAACGACACCTTCAA 58.708 50.000 0.00 0.00 35.47 2.69
3747 4646 3.181458 GGATGAAATGGATTGCATTGCCT 60.181 43.478 6.12 0.00 36.18 4.75
3797 4696 5.471456 GTCCATACCATAGGCTTTTGAGATG 59.529 44.000 0.00 0.00 0.00 2.90
3828 4727 6.882768 ATGTTACTCCTGAAGGAAGAAGAT 57.117 37.500 0.00 0.00 44.91 2.40
3851 4750 6.928348 TTGTTTCCTAGTCTCATAGTGGAA 57.072 37.500 0.00 0.00 32.54 3.53
3906 4809 2.357034 GTCGACTTGAGCCGGCAA 60.357 61.111 31.54 14.68 0.00 4.52
3920 4823 1.804396 CGGCAACTGACCCATTTGCA 61.804 55.000 18.86 0.00 46.80 4.08
3926 4829 2.287457 CTGACCCATTTGCATGCCGG 62.287 60.000 16.68 10.27 0.00 6.13
3933 4836 2.418471 CCATTTGCATGCCGGTTGTTAT 60.418 45.455 16.68 0.00 0.00 1.89
3934 4837 2.645730 TTTGCATGCCGGTTGTTATC 57.354 45.000 16.68 0.00 0.00 1.75
3935 4838 1.539157 TTGCATGCCGGTTGTTATCA 58.461 45.000 16.68 0.00 0.00 2.15
3939 4842 2.094752 GCATGCCGGTTGTTATCAAGTT 60.095 45.455 6.36 0.00 33.97 2.66
3941 4844 4.380023 GCATGCCGGTTGTTATCAAGTTAA 60.380 41.667 6.36 0.00 33.97 2.01
3943 4846 4.643463 TGCCGGTTGTTATCAAGTTAAGA 58.357 39.130 1.90 0.00 33.97 2.10
3946 4849 5.854866 GCCGGTTGTTATCAAGTTAAGAAAC 59.145 40.000 1.90 0.00 33.97 2.78
3965 4868 6.860080 AGAAACTTCATATGCATTGGACAAG 58.140 36.000 3.54 3.43 0.00 3.16
3966 4869 6.435277 AGAAACTTCATATGCATTGGACAAGT 59.565 34.615 3.54 4.07 0.00 3.16
3967 4870 5.824904 ACTTCATATGCATTGGACAAGTC 57.175 39.130 3.54 0.00 0.00 3.01
3968 4871 5.255687 ACTTCATATGCATTGGACAAGTCA 58.744 37.500 3.54 0.00 0.00 3.41
3969 4872 5.889853 ACTTCATATGCATTGGACAAGTCAT 59.110 36.000 3.54 6.91 0.00 3.06
3970 4873 5.761165 TCATATGCATTGGACAAGTCATG 57.239 39.130 3.54 0.00 0.00 3.07
3975 4878 2.029649 GCATTGGACAAGTCATGTTGCT 60.030 45.455 2.29 0.00 44.12 3.91
3992 4895 0.393537 GCTATTGTGCTGCAGGAGGT 60.394 55.000 17.12 3.99 0.00 3.85
4029 4932 8.627403 CATTGATGGAACTGCTATTTCTGTTAT 58.373 33.333 0.00 0.00 0.00 1.89
4030 4933 7.792374 TGATGGAACTGCTATTTCTGTTATC 57.208 36.000 0.00 0.00 0.00 1.75
4031 4934 7.337938 TGATGGAACTGCTATTTCTGTTATCA 58.662 34.615 0.00 0.00 0.00 2.15
4032 4935 6.985188 TGGAACTGCTATTTCTGTTATCAC 57.015 37.500 0.00 0.00 0.00 3.06
4034 4937 7.168219 TGGAACTGCTATTTCTGTTATCACTT 58.832 34.615 0.00 0.00 0.00 3.16
4035 4938 7.334421 TGGAACTGCTATTTCTGTTATCACTTC 59.666 37.037 0.00 0.00 0.00 3.01
4036 4939 6.893958 ACTGCTATTTCTGTTATCACTTCG 57.106 37.500 0.00 0.00 0.00 3.79
4037 4940 6.631016 ACTGCTATTTCTGTTATCACTTCGA 58.369 36.000 0.00 0.00 0.00 3.71
4038 4941 6.531948 ACTGCTATTTCTGTTATCACTTCGAC 59.468 38.462 0.00 0.00 0.00 4.20
4039 4942 6.394809 TGCTATTTCTGTTATCACTTCGACA 58.605 36.000 0.00 0.00 0.00 4.35
4040 4943 6.871492 TGCTATTTCTGTTATCACTTCGACAA 59.129 34.615 0.00 0.00 0.00 3.18
4043 4946 7.905604 ATTTCTGTTATCACTTCGACAATGA 57.094 32.000 0.00 0.00 0.00 2.57
4044 4947 7.722795 TTTCTGTTATCACTTCGACAATGAA 57.277 32.000 0.00 0.00 0.00 2.57
4085 4999 2.292569 AGAGTGCTGTCAATGCAACTTG 59.707 45.455 0.00 0.00 42.41 3.16
4118 5086 3.057969 TGCATTCCTTTGACGTCTCAT 57.942 42.857 17.92 0.00 0.00 2.90
4120 5088 4.769688 TGCATTCCTTTGACGTCTCATAT 58.230 39.130 17.92 0.22 0.00 1.78
4121 5089 5.185454 TGCATTCCTTTGACGTCTCATATT 58.815 37.500 17.92 0.00 0.00 1.28
4122 5090 5.294306 TGCATTCCTTTGACGTCTCATATTC 59.706 40.000 17.92 0.00 0.00 1.75
4123 5091 5.294306 GCATTCCTTTGACGTCTCATATTCA 59.706 40.000 17.92 0.00 0.00 2.57
4124 5092 6.709643 CATTCCTTTGACGTCTCATATTCAC 58.290 40.000 17.92 0.00 0.00 3.18
4125 5093 5.400066 TCCTTTGACGTCTCATATTCACA 57.600 39.130 17.92 0.00 0.00 3.58
4126 5094 5.789521 TCCTTTGACGTCTCATATTCACAA 58.210 37.500 17.92 0.00 0.00 3.33
4127 5095 5.869344 TCCTTTGACGTCTCATATTCACAAG 59.131 40.000 17.92 3.59 0.00 3.16
4128 5096 5.446473 CCTTTGACGTCTCATATTCACAAGC 60.446 44.000 17.92 0.00 0.00 4.01
4129 5097 4.186856 TGACGTCTCATATTCACAAGCA 57.813 40.909 17.92 0.00 0.00 3.91
4130 5098 4.565022 TGACGTCTCATATTCACAAGCAA 58.435 39.130 17.92 0.00 0.00 3.91
4131 5099 4.627035 TGACGTCTCATATTCACAAGCAAG 59.373 41.667 17.92 0.00 0.00 4.01
4132 5100 3.935203 ACGTCTCATATTCACAAGCAAGG 59.065 43.478 0.00 0.00 0.00 3.61
4133 5101 3.242543 CGTCTCATATTCACAAGCAAGGC 60.243 47.826 0.00 0.00 0.00 4.35
4134 5102 3.691118 GTCTCATATTCACAAGCAAGGCA 59.309 43.478 0.00 0.00 0.00 4.75
4135 5103 3.691118 TCTCATATTCACAAGCAAGGCAC 59.309 43.478 0.00 0.00 0.00 5.01
4136 5104 3.419943 TCATATTCACAAGCAAGGCACA 58.580 40.909 0.00 0.00 0.00 4.57
4137 5105 3.441222 TCATATTCACAAGCAAGGCACAG 59.559 43.478 0.00 0.00 0.00 3.66
4138 5106 1.985473 ATTCACAAGCAAGGCACAGA 58.015 45.000 0.00 0.00 0.00 3.41
4139 5107 1.024271 TTCACAAGCAAGGCACAGAC 58.976 50.000 0.00 0.00 0.00 3.51
4140 5108 0.107263 TCACAAGCAAGGCACAGACA 60.107 50.000 0.00 0.00 0.00 3.41
4141 5109 0.740149 CACAAGCAAGGCACAGACAA 59.260 50.000 0.00 0.00 0.00 3.18
4142 5110 1.134753 CACAAGCAAGGCACAGACAAA 59.865 47.619 0.00 0.00 0.00 2.83
4143 5111 1.406539 ACAAGCAAGGCACAGACAAAG 59.593 47.619 0.00 0.00 0.00 2.77
4144 5112 1.035139 AAGCAAGGCACAGACAAAGG 58.965 50.000 0.00 0.00 0.00 3.11
4153 5121 2.416747 CACAGACAAAGGCAGAATCGA 58.583 47.619 0.00 0.00 0.00 3.59
4171 5139 4.316205 TCGAAGGATACGCATACACATT 57.684 40.909 0.00 0.00 46.39 2.71
4173 5141 4.743151 TCGAAGGATACGCATACACATTTC 59.257 41.667 0.00 0.00 46.39 2.17
4205 5182 6.427150 GTTACAACATCTTTTCTTCTCGCAA 58.573 36.000 0.00 0.00 0.00 4.85
4232 5209 7.098074 GTAGAAAGCTACAGGTACATACAGT 57.902 40.000 0.00 0.00 45.10 3.55
4237 5214 4.113354 GCTACAGGTACATACAGTGAAGC 58.887 47.826 0.00 0.00 0.00 3.86
4240 5217 3.055819 ACAGGTACATACAGTGAAGCAGG 60.056 47.826 0.00 0.00 0.00 4.85
4241 5218 3.195610 CAGGTACATACAGTGAAGCAGGA 59.804 47.826 0.00 0.00 0.00 3.86
4245 5222 2.093764 ACATACAGTGAAGCAGGAGAGC 60.094 50.000 0.00 0.00 0.00 4.09
4247 5224 1.447489 CAGTGAAGCAGGAGAGCGG 60.447 63.158 0.00 0.00 40.15 5.52
4249 5226 1.739562 GTGAAGCAGGAGAGCGGTG 60.740 63.158 0.00 0.00 40.15 4.94
4250 5227 2.210013 TGAAGCAGGAGAGCGGTGT 61.210 57.895 0.00 0.00 40.15 4.16
4251 5228 1.739562 GAAGCAGGAGAGCGGTGTG 60.740 63.158 0.00 0.00 40.15 3.82
4253 5230 3.695606 GCAGGAGAGCGGTGTGGA 61.696 66.667 0.00 0.00 0.00 4.02
4254 5231 2.262915 CAGGAGAGCGGTGTGGAC 59.737 66.667 0.00 0.00 0.00 4.02
4255 5232 3.374402 AGGAGAGCGGTGTGGACG 61.374 66.667 0.00 0.00 0.00 4.79
4267 5266 1.594293 GTGGACGGGGATACATGCG 60.594 63.158 0.00 0.00 39.74 4.73
4342 5344 1.219393 CTTCCTCCGCACCTTCTCC 59.781 63.158 0.00 0.00 0.00 3.71
4455 5457 1.144057 CCTTCTTCATCGACCCCGG 59.856 63.158 0.00 0.00 36.24 5.73
4537 5539 4.988598 AGGACACGCGTGCTTGGG 62.989 66.667 37.35 14.97 41.76 4.12
4558 5560 2.900528 CGTGCACGGAGAAAGAAGT 58.099 52.632 31.15 0.00 35.37 3.01
4559 5561 0.508641 CGTGCACGGAGAAAGAAGTG 59.491 55.000 31.15 0.00 37.63 3.16
4561 5563 2.210116 GTGCACGGAGAAAGAAGTGAA 58.790 47.619 0.00 0.00 36.79 3.18
4567 5573 2.471743 CGGAGAAAGAAGTGAACACGAC 59.528 50.000 0.00 0.00 36.20 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.504367 GCAAGGGTGTACAGTTGATGT 58.496 47.619 14.03 0.00 46.45 3.06
60 61 0.476338 ATGTGTGGCAAGGGTGTACA 59.524 50.000 0.00 0.00 0.00 2.90
61 62 2.081462 GTATGTGTGGCAAGGGTGTAC 58.919 52.381 0.00 0.00 0.00 2.90
63 64 0.771127 AGTATGTGTGGCAAGGGTGT 59.229 50.000 0.00 0.00 0.00 4.16
64 65 1.167851 CAGTATGTGTGGCAAGGGTG 58.832 55.000 0.00 0.00 0.00 4.61
65 66 0.609131 GCAGTATGTGTGGCAAGGGT 60.609 55.000 0.00 0.00 39.31 4.34
93 365 4.578105 GCTTCTCCTAGGATTCCATTTGTG 59.422 45.833 13.12 0.00 0.00 3.33
124 396 0.949105 GGTCAAGTACACGTGGCCTG 60.949 60.000 21.57 12.00 44.82 4.85
223 499 2.045926 GGTGATTGGTGCTCGGCT 60.046 61.111 0.00 0.00 0.00 5.52
224 500 1.315257 ATTGGTGATTGGTGCTCGGC 61.315 55.000 0.00 0.00 0.00 5.54
226 502 0.452987 CCATTGGTGATTGGTGCTCG 59.547 55.000 0.00 0.00 0.00 5.03
227 503 0.819582 CCCATTGGTGATTGGTGCTC 59.180 55.000 1.20 0.00 0.00 4.26
228 504 0.409092 TCCCATTGGTGATTGGTGCT 59.591 50.000 1.20 0.00 0.00 4.40
229 505 0.819582 CTCCCATTGGTGATTGGTGC 59.180 55.000 1.20 0.00 0.00 5.01
230 506 1.005805 TCCTCCCATTGGTGATTGGTG 59.994 52.381 1.20 0.00 0.00 4.17
231 507 1.285962 CTCCTCCCATTGGTGATTGGT 59.714 52.381 1.20 0.00 0.00 3.67
232 508 2.025863 GCTCCTCCCATTGGTGATTGG 61.026 57.143 1.20 0.00 0.00 3.16
233 509 1.396653 GCTCCTCCCATTGGTGATTG 58.603 55.000 1.20 0.00 0.00 2.67
234 510 0.107017 CGCTCCTCCCATTGGTGATT 60.107 55.000 1.20 0.00 0.00 2.57
235 511 1.274703 ACGCTCCTCCCATTGGTGAT 61.275 55.000 1.20 0.00 0.00 3.06
236 512 1.918293 ACGCTCCTCCCATTGGTGA 60.918 57.895 1.20 0.00 0.00 4.02
345 626 4.870123 ACTTGCTAGGCTATGATGAGAG 57.130 45.455 0.00 0.00 0.00 3.20
366 647 3.204597 ACGCACGACAAAGTTCAAAAA 57.795 38.095 0.00 0.00 0.00 1.94
379 660 2.149803 ATCAGTCCCGAAACGCACGA 62.150 55.000 0.00 0.00 0.00 4.35
393 674 1.995376 AAACCCGGCTGAAAATCAGT 58.005 45.000 8.97 0.00 45.94 3.41
465 749 1.235724 AAGAAACCCGAGGAAAAGCG 58.764 50.000 0.00 0.00 0.00 4.68
473 757 4.600692 AAATCCCAAAAAGAAACCCGAG 57.399 40.909 0.00 0.00 0.00 4.63
500 784 3.733507 CTCCCCTGTCGATCCCGGA 62.734 68.421 0.73 0.00 36.24 5.14
543 827 8.328864 ACAAAAATAAGTAGAGAAATCGATCGC 58.671 33.333 11.09 0.00 0.00 4.58
569 853 7.265673 CGGATCAGGATCTAGAAAAACAAGTA 58.734 38.462 9.01 0.00 37.92 2.24
570 854 6.109359 CGGATCAGGATCTAGAAAAACAAGT 58.891 40.000 9.01 0.00 37.92 3.16
573 857 4.442706 GCGGATCAGGATCTAGAAAAACA 58.557 43.478 9.01 0.00 37.92 2.83
574 858 3.810386 GGCGGATCAGGATCTAGAAAAAC 59.190 47.826 9.01 0.00 37.92 2.43
623 925 2.529632 AGCGGGATAGCAGTGATATCA 58.470 47.619 25.41 0.00 40.15 2.15
626 928 6.599356 TTATTAAGCGGGATAGCAGTGATA 57.401 37.500 0.00 0.00 40.15 2.15
633 935 7.600960 AGTACTAGTTTATTAAGCGGGATAGC 58.399 38.462 0.00 0.00 37.41 2.97
659 961 5.220472 CGACAAGAAATGGCATACACAGTAG 60.220 44.000 0.00 0.00 36.57 2.57
660 962 4.629634 CGACAAGAAATGGCATACACAGTA 59.370 41.667 0.00 0.00 36.57 2.74
666 968 5.967674 CAGAAATCGACAAGAAATGGCATAC 59.032 40.000 0.00 0.00 36.57 2.39
667 969 5.449041 GCAGAAATCGACAAGAAATGGCATA 60.449 40.000 0.00 0.00 36.57 3.14
676 978 0.320334 TGCGGCAGAAATCGACAAGA 60.320 50.000 0.00 0.00 0.00 3.02
730 1032 3.333029 AATTCAAAATCGCAAAGGGGG 57.667 42.857 0.00 0.00 0.00 5.40
733 1035 6.709145 TGATGAAATTCAAAATCGCAAAGG 57.291 33.333 0.00 0.00 0.00 3.11
778 1086 2.815211 GCGAGCTCGTGATTGGCA 60.815 61.111 34.46 0.00 42.22 4.92
781 1089 1.421485 GGTTGCGAGCTCGTGATTG 59.579 57.895 34.46 8.82 42.22 2.67
820 1128 2.469465 TTTCTCGGGAAGCCTGCCTG 62.469 60.000 0.00 0.00 32.61 4.85
821 1129 1.566298 ATTTCTCGGGAAGCCTGCCT 61.566 55.000 0.00 0.00 32.61 4.75
822 1130 0.681243 AATTTCTCGGGAAGCCTGCC 60.681 55.000 0.00 0.00 32.61 4.85
988 1299 4.854784 GTCCATCGCTCGCTCGCA 62.855 66.667 0.00 0.00 0.00 5.10
1402 1727 4.013728 AGACCATAGTGACACTGAGAGTC 58.986 47.826 18.58 17.06 36.55 3.36
1453 1778 0.103208 GACCACTACTCCAGGCATCG 59.897 60.000 0.00 0.00 0.00 3.84
1522 1850 6.093771 GGCATTATAGAGATCAAGAGCATTGG 59.906 42.308 0.00 0.00 0.00 3.16
1730 2058 4.816385 GCTAATTAGGCTGTGTGCATCTTA 59.184 41.667 14.28 0.00 45.15 2.10
1757 2085 4.680171 TGTAGTATGACAGTCTGACACG 57.320 45.455 10.88 3.17 0.00 4.49
1786 2114 8.662781 AATAATAAGTCATGCACTCGTATTGT 57.337 30.769 0.00 0.00 32.30 2.71
1796 2124 7.823799 TCACTGTCAGAAATAATAAGTCATGCA 59.176 33.333 6.91 0.00 0.00 3.96
1804 2132 8.918202 ACAACCTTCACTGTCAGAAATAATAA 57.082 30.769 6.91 0.00 0.00 1.40
1805 2133 8.375506 AGACAACCTTCACTGTCAGAAATAATA 58.624 33.333 6.91 0.00 43.64 0.98
1806 2134 7.173907 CAGACAACCTTCACTGTCAGAAATAAT 59.826 37.037 6.91 0.00 43.64 1.28
1836 2164 4.779113 CGGAGGGAGGGAGTACAA 57.221 61.111 0.00 0.00 0.00 2.41
1849 2177 0.921347 CGCGACAAGTATTTCCGGAG 59.079 55.000 3.34 0.00 0.00 4.63
1850 2178 0.458889 CCGCGACAAGTATTTCCGGA 60.459 55.000 8.23 0.00 36.55 5.14
1851 2179 0.458889 TCCGCGACAAGTATTTCCGG 60.459 55.000 8.23 0.00 35.83 5.14
1852 2180 1.352114 TTCCGCGACAAGTATTTCCG 58.648 50.000 8.23 0.00 0.00 4.30
1853 2181 3.680789 CATTTCCGCGACAAGTATTTCC 58.319 45.455 8.23 0.00 0.00 3.13
1854 2182 3.098636 GCATTTCCGCGACAAGTATTTC 58.901 45.455 8.23 0.00 0.00 2.17
1855 2183 2.486203 TGCATTTCCGCGACAAGTATTT 59.514 40.909 8.23 0.00 33.35 1.40
1856 2184 2.080693 TGCATTTCCGCGACAAGTATT 58.919 42.857 8.23 0.00 33.35 1.89
1857 2185 1.732941 TGCATTTCCGCGACAAGTAT 58.267 45.000 8.23 0.00 33.35 2.12
1858 2186 1.732941 ATGCATTTCCGCGACAAGTA 58.267 45.000 8.23 0.00 33.35 2.24
1859 2187 1.732941 TATGCATTTCCGCGACAAGT 58.267 45.000 8.23 0.00 33.35 3.16
1860 2188 2.823196 TTATGCATTTCCGCGACAAG 57.177 45.000 8.23 0.00 33.35 3.16
1861 2189 3.560902 TTTTATGCATTTCCGCGACAA 57.439 38.095 8.23 0.00 33.35 3.18
1862 2190 3.560902 TTTTTATGCATTTCCGCGACA 57.439 38.095 8.23 0.00 33.35 4.35
1863 2191 3.242712 CCATTTTTATGCATTTCCGCGAC 59.757 43.478 8.23 0.00 33.35 5.19
1864 2192 3.129462 TCCATTTTTATGCATTTCCGCGA 59.871 39.130 8.23 0.00 33.35 5.87
1865 2193 3.443037 TCCATTTTTATGCATTTCCGCG 58.557 40.909 3.54 0.00 33.35 6.46
1866 2194 4.810491 ACATCCATTTTTATGCATTTCCGC 59.190 37.500 3.54 0.00 0.00 5.54
1867 2195 8.084073 AGATACATCCATTTTTATGCATTTCCG 58.916 33.333 3.54 0.00 0.00 4.30
1873 2201 9.066892 GGTTCTAGATACATCCATTTTTATGCA 57.933 33.333 0.00 0.00 0.00 3.96
1874 2202 9.066892 TGGTTCTAGATACATCCATTTTTATGC 57.933 33.333 0.00 0.00 0.00 3.14
1883 2211 9.778741 GATGTATTTTGGTTCTAGATACATCCA 57.221 33.333 20.24 10.91 45.75 3.41
1895 2223 9.778741 TGGATGTATCTAGATGTATTTTGGTTC 57.221 33.333 15.79 0.00 0.00 3.62
1903 2231 8.690884 CGGAGAAATGGATGTATCTAGATGTAT 58.309 37.037 15.79 9.11 0.00 2.29
1904 2232 7.888546 TCGGAGAAATGGATGTATCTAGATGTA 59.111 37.037 15.79 4.44 0.00 2.29
1905 2233 6.721668 TCGGAGAAATGGATGTATCTAGATGT 59.278 38.462 15.79 1.25 0.00 3.06
1906 2234 7.032580 GTCGGAGAAATGGATGTATCTAGATG 58.967 42.308 15.79 0.00 39.69 2.90
1907 2235 6.721668 TGTCGGAGAAATGGATGTATCTAGAT 59.278 38.462 10.73 10.73 39.69 1.98
1908 2236 6.068670 TGTCGGAGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 39.69 2.43
1909 2237 6.332735 TGTCGGAGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 39.69 2.43
1910 2238 6.323996 ACTTGTCGGAGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 39.69 1.98
1911 2239 5.129485 ACTTGTCGGAGAAATGGATGTATCT 59.871 40.000 0.00 0.00 39.69 1.98
1912 2240 5.360591 ACTTGTCGGAGAAATGGATGTATC 58.639 41.667 0.00 0.00 39.69 2.24
1913 2241 5.359194 ACTTGTCGGAGAAATGGATGTAT 57.641 39.130 0.00 0.00 39.69 2.29
1914 2242 4.819105 ACTTGTCGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 39.69 2.29
1915 2243 3.703001 ACTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
1916 2244 6.238484 GGAAATACTTGTCGGAGAAATGGATG 60.238 42.308 0.00 0.00 39.69 3.51
1917 2245 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
1918 2246 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
1919 2247 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
1920 2248 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
1921 2249 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
1922 2250 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
1923 2251 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
1924 2252 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
1925 2253 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
1927 2255 2.159014 TCCATCCGGAAATACTTGTCGG 60.159 50.000 9.01 0.00 38.83 4.79
1928 2256 3.123804 CTCCATCCGGAAATACTTGTCG 58.876 50.000 9.01 0.00 42.21 4.35
1929 2257 3.467803 CCTCCATCCGGAAATACTTGTC 58.532 50.000 9.01 0.00 42.21 3.18
1930 2258 2.172717 CCCTCCATCCGGAAATACTTGT 59.827 50.000 9.01 0.00 42.21 3.16
1931 2259 2.438021 TCCCTCCATCCGGAAATACTTG 59.562 50.000 9.01 0.00 42.21 3.16
1932 2260 2.706190 CTCCCTCCATCCGGAAATACTT 59.294 50.000 9.01 0.00 42.21 2.24
1933 2261 2.330216 CTCCCTCCATCCGGAAATACT 58.670 52.381 9.01 0.00 42.21 2.12
1934 2262 2.047830 ACTCCCTCCATCCGGAAATAC 58.952 52.381 9.01 0.00 42.21 1.89
1935 2263 2.489528 ACTCCCTCCATCCGGAAATA 57.510 50.000 9.01 0.00 42.21 1.40
1936 2264 2.047830 GTACTCCCTCCATCCGGAAAT 58.952 52.381 9.01 0.00 42.21 2.17
1937 2265 1.273381 TGTACTCCCTCCATCCGGAAA 60.273 52.381 9.01 0.00 42.21 3.13
1938 2266 0.337082 TGTACTCCCTCCATCCGGAA 59.663 55.000 9.01 0.00 42.21 4.30
1939 2267 0.337082 TTGTACTCCCTCCATCCGGA 59.663 55.000 6.61 6.61 39.79 5.14
1940 2268 1.200519 TTTGTACTCCCTCCATCCGG 58.799 55.000 0.00 0.00 0.00 5.14
1941 2269 2.027561 TGTTTTGTACTCCCTCCATCCG 60.028 50.000 0.00 0.00 0.00 4.18
1942 2270 3.610911 CTGTTTTGTACTCCCTCCATCC 58.389 50.000 0.00 0.00 0.00 3.51
1943 2271 3.263425 TCCTGTTTTGTACTCCCTCCATC 59.737 47.826 0.00 0.00 0.00 3.51
1944 2272 3.256704 TCCTGTTTTGTACTCCCTCCAT 58.743 45.455 0.00 0.00 0.00 3.41
1945 2273 2.696775 TCCTGTTTTGTACTCCCTCCA 58.303 47.619 0.00 0.00 0.00 3.86
1946 2274 3.782656 TTCCTGTTTTGTACTCCCTCC 57.217 47.619 0.00 0.00 0.00 4.30
1947 2275 4.715713 AGTTTCCTGTTTTGTACTCCCTC 58.284 43.478 0.00 0.00 0.00 4.30
1948 2276 4.790718 AGTTTCCTGTTTTGTACTCCCT 57.209 40.909 0.00 0.00 0.00 4.20
1949 2277 7.520451 AATTAGTTTCCTGTTTTGTACTCCC 57.480 36.000 0.00 0.00 0.00 4.30
1950 2278 9.059260 TGTAATTAGTTTCCTGTTTTGTACTCC 57.941 33.333 0.00 0.00 0.00 3.85
1951 2279 9.874215 GTGTAATTAGTTTCCTGTTTTGTACTC 57.126 33.333 0.00 0.00 0.00 2.59
1952 2280 8.843262 GGTGTAATTAGTTTCCTGTTTTGTACT 58.157 33.333 0.00 0.00 0.00 2.73
2083 2419 8.098286 ACTACAACATAAACTGCCACATACTTA 58.902 33.333 0.00 0.00 0.00 2.24
2084 2420 6.940298 ACTACAACATAAACTGCCACATACTT 59.060 34.615 0.00 0.00 0.00 2.24
2085 2421 6.472887 ACTACAACATAAACTGCCACATACT 58.527 36.000 0.00 0.00 0.00 2.12
2090 2426 5.941948 AAGACTACAACATAAACTGCCAC 57.058 39.130 0.00 0.00 0.00 5.01
2107 2443 6.170506 TCGTGGCATTAAATCAGTAAAGACT 58.829 36.000 0.00 0.00 35.80 3.24
2160 2498 7.286215 TCATAGGATTTGCAGTAGGTAGTAC 57.714 40.000 0.00 0.00 0.00 2.73
2225 2563 9.554395 TTCATGTTTTGTACATTCTCAGACTAA 57.446 29.630 0.00 0.00 45.19 2.24
2227 2565 8.345565 GTTTCATGTTTTGTACATTCTCAGACT 58.654 33.333 0.00 0.00 45.19 3.24
2248 2586 7.786030 TGGATGACTTGGTTTAATTTGTTTCA 58.214 30.769 0.00 0.00 0.00 2.69
2267 2606 8.689061 CACTATCCTCAAATGAAAATTGGATGA 58.311 33.333 10.00 0.00 34.97 2.92
2326 2666 4.402793 TGGCCAGAGTCTAAATACAGTCTC 59.597 45.833 0.00 0.00 32.79 3.36
2336 2676 4.868268 ACTGTACTATGGCCAGAGTCTAA 58.132 43.478 35.19 20.37 34.36 2.10
2374 2714 2.717639 AAGACCACAACTGAACTGCT 57.282 45.000 0.00 0.00 0.00 4.24
2469 2921 5.615289 ACAACTGAACTACTGAAGCAGAAT 58.385 37.500 0.82 0.00 35.18 2.40
2505 2961 5.514500 AAGAGGTAGGGAACAAGCAATTA 57.486 39.130 0.00 0.00 0.00 1.40
2522 2978 4.502962 CTCTCCTAGCAACAAGAAAGAGG 58.497 47.826 0.00 0.00 0.00 3.69
2573 3029 6.211184 ACAAAAAGCCCATGATCAAATGAGTA 59.789 34.615 0.00 0.00 0.00 2.59
2578 3034 5.048573 GCAAACAAAAAGCCCATGATCAAAT 60.049 36.000 0.00 0.00 0.00 2.32
2581 3037 3.071312 AGCAAACAAAAAGCCCATGATCA 59.929 39.130 0.00 0.00 0.00 2.92
2590 3046 5.860716 CCAGATAGAAGAGCAAACAAAAAGC 59.139 40.000 0.00 0.00 0.00 3.51
2613 3069 9.968870 AATATAGTAACGATTTCTCTCTGTTCC 57.031 33.333 0.00 0.00 0.00 3.62
2628 3084 8.223769 GCAATGAACCAGATCAATATAGTAACG 58.776 37.037 0.00 0.00 32.06 3.18
2648 3104 6.662865 TGAGGAAAAACTATTTGGCAATGA 57.337 33.333 0.00 0.00 0.00 2.57
2667 3123 3.135530 AGTGGCTAGCTAAGGAAATGAGG 59.864 47.826 15.72 0.00 0.00 3.86
2958 3828 7.712639 CCTGCTGTTGAGCTAGAAAGAAATATA 59.287 37.037 0.00 0.00 46.39 0.86
3002 3872 7.443879 TGTCTCTGCTTATGTGAATGTGTTTAA 59.556 33.333 0.00 0.00 0.00 1.52
3019 3889 7.436118 TGCAAAAAGATAAAAATGTCTCTGCT 58.564 30.769 0.00 0.00 0.00 4.24
3029 3899 5.278758 CCCTCGTCCTGCAAAAAGATAAAAA 60.279 40.000 0.00 0.00 0.00 1.94
3046 3916 2.027751 GCTCGCATACCCCTCGTC 59.972 66.667 0.00 0.00 0.00 4.20
3066 3936 4.551388 GAGTAGCAGGTAATGAGAATCGG 58.449 47.826 0.00 0.00 38.61 4.18
3086 3968 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3087 3969 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3088 3970 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3089 3971 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3090 3972 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3091 3973 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
3092 3974 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
3093 3975 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
3094 3976 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
3095 3977 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
3096 3978 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
3097 3979 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
3098 3980 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
3099 3981 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
3100 3982 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
3101 3983 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
3102 3984 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
3103 3985 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
3104 3986 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
3105 3987 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
3106 3988 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
3107 3989 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
3131 4013 9.730705 TGTCTTAACTTTGTACTAGCTCTAGTA 57.269 33.333 11.59 11.59 43.98 1.82
3133 4015 8.732531 AGTGTCTTAACTTTGTACTAGCTCTAG 58.267 37.037 0.00 2.55 39.04 2.43
3134 4016 8.632906 AGTGTCTTAACTTTGTACTAGCTCTA 57.367 34.615 0.00 0.00 0.00 2.43
3135 4017 7.527568 AGTGTCTTAACTTTGTACTAGCTCT 57.472 36.000 0.00 0.00 0.00 4.09
3136 4018 9.857957 ATAAGTGTCTTAACTTTGTACTAGCTC 57.142 33.333 0.00 0.00 40.77 4.09
3142 4024 9.673454 CCCAAAATAAGTGTCTTAACTTTGTAC 57.327 33.333 16.72 0.00 40.77 2.90
3143 4025 9.629878 TCCCAAAATAAGTGTCTTAACTTTGTA 57.370 29.630 16.72 8.94 40.77 2.41
3144 4026 8.410912 GTCCCAAAATAAGTGTCTTAACTTTGT 58.589 33.333 16.72 0.00 40.77 2.83
3145 4027 7.589954 CGTCCCAAAATAAGTGTCTTAACTTTG 59.410 37.037 14.00 14.00 40.77 2.77
3146 4028 7.255346 CCGTCCCAAAATAAGTGTCTTAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
3147 4029 6.206048 CCGTCCCAAAATAAGTGTCTTAACTT 59.794 38.462 0.00 0.00 42.89 2.66
3148 4030 5.704053 CCGTCCCAAAATAAGTGTCTTAACT 59.296 40.000 0.00 0.00 0.00 2.24
3149 4031 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
3150 4032 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
3151 4033 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
3152 4034 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3153 4035 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3154 4036 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3155 4037 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3156 4038 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3157 4039 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3158 4040 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3159 4041 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3160 4042 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3161 4043 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3162 4044 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3163 4045 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3164 4046 4.687262 ATATATACTCCCTCCGTCCCAA 57.313 45.455 0.00 0.00 0.00 4.12
3165 4047 4.687262 AATATATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
3166 4048 6.612741 AGATAATATATACTCCCTCCGTCCC 58.387 44.000 0.00 0.00 0.00 4.46
3167 4049 6.716173 GGAGATAATATATACTCCCTCCGTCC 59.284 46.154 16.34 3.81 41.89 4.79
3168 4050 7.288560 TGGAGATAATATATACTCCCTCCGTC 58.711 42.308 20.78 5.28 45.61 4.79
3169 4051 7.222180 TGGAGATAATATATACTCCCTCCGT 57.778 40.000 20.78 0.00 45.61 4.69
3170 4052 8.713708 AATGGAGATAATATATACTCCCTCCG 57.286 38.462 20.78 0.00 45.61 4.63
3203 4085 9.487790 GAGAAGAATAGCATAGAATAGCAAGTT 57.512 33.333 0.00 0.00 0.00 2.66
3216 4098 8.477256 GCTATAGGATGAAGAGAAGAATAGCAT 58.523 37.037 1.04 0.00 39.22 3.79
3217 4099 7.673504 AGCTATAGGATGAAGAGAAGAATAGCA 59.326 37.037 11.70 0.00 40.94 3.49
3218 4100 7.975616 CAGCTATAGGATGAAGAGAAGAATAGC 59.024 40.741 1.04 0.00 39.54 2.97
3219 4101 9.241919 TCAGCTATAGGATGAAGAGAAGAATAG 57.758 37.037 1.04 0.00 37.41 1.73
3220 4102 9.593565 TTCAGCTATAGGATGAAGAGAAGAATA 57.406 33.333 1.04 0.00 44.12 1.75
3221 4103 8.489676 TTCAGCTATAGGATGAAGAGAAGAAT 57.510 34.615 1.04 0.00 44.12 2.40
3222 4104 7.904558 TTCAGCTATAGGATGAAGAGAAGAA 57.095 36.000 1.04 0.00 44.12 2.52
3273 4155 7.429633 CATCTTATGGTTGTGTTGGTTTACAA 58.570 34.615 0.00 0.00 36.54 2.41
3310 4192 9.330063 CACCAAACTAGCTTAATAGAATGATGA 57.670 33.333 0.00 0.00 0.00 2.92
3311 4193 9.330063 TCACCAAACTAGCTTAATAGAATGATG 57.670 33.333 0.00 0.00 0.00 3.07
3395 4285 7.755591 AGACAAAACAGATGTTACTGCATATG 58.244 34.615 0.00 0.00 42.04 1.78
3421 4311 2.478370 CCAGCCTATGCAACATGAAACG 60.478 50.000 0.00 0.00 41.13 3.60
3523 4413 0.609131 AAGGTCCGGCATGTTTCCTG 60.609 55.000 0.00 0.00 0.00 3.86
3532 4422 2.599281 TCGACAGAAGGTCCGGCA 60.599 61.111 0.00 0.00 43.95 5.69
3560 4450 1.260561 CTTGAAGGTGTCGTTGAACCG 59.739 52.381 0.00 0.00 41.61 4.44
3566 4456 0.535102 CCTGCCTTGAAGGTGTCGTT 60.535 55.000 13.58 0.00 37.80 3.85
3666 4556 2.515523 CCTGAAGATGGGCAGCCG 60.516 66.667 5.00 0.00 0.00 5.52
3747 4646 3.642848 GGAGGGGTACACGGAATATACAA 59.357 47.826 0.00 0.00 0.00 2.41
3797 4696 7.113658 TCCTTCAGGAGTAACATAACATCTC 57.886 40.000 0.00 0.00 39.78 2.75
3828 4727 6.928348 TTCCACTATGAGACTAGGAAACAA 57.072 37.500 0.00 0.00 32.63 2.83
3840 4739 6.477053 TGGAGAGAGATTTTCCACTATGAG 57.523 41.667 0.00 0.00 36.13 2.90
3851 4750 5.044476 TCTCACCTAGAGTGGAGAGAGATTT 60.044 44.000 6.60 0.00 44.73 2.17
3906 4809 1.597797 CGGCATGCAAATGGGTCAGT 61.598 55.000 21.36 0.00 0.00 3.41
3920 4823 5.250200 TCTTAACTTGATAACAACCGGCAT 58.750 37.500 0.00 0.00 32.27 4.40
3939 4842 7.936496 TGTCCAATGCATATGAAGTTTCTTA 57.064 32.000 6.97 0.00 0.00 2.10
3941 4844 6.435277 ACTTGTCCAATGCATATGAAGTTTCT 59.565 34.615 6.97 0.00 0.00 2.52
3943 4846 6.209192 TGACTTGTCCAATGCATATGAAGTTT 59.791 34.615 6.97 0.00 0.00 2.66
3946 4849 5.823209 TGACTTGTCCAATGCATATGAAG 57.177 39.130 6.97 1.00 0.00 3.02
3948 4851 5.195185 ACATGACTTGTCCAATGCATATGA 58.805 37.500 6.97 0.00 30.89 2.15
3952 4855 3.615592 GCAACATGACTTGTCCAATGCAT 60.616 43.478 0.00 0.00 37.96 3.96
3953 4856 2.288334 GCAACATGACTTGTCCAATGCA 60.288 45.455 0.00 0.00 37.96 3.96
3954 4857 2.029649 AGCAACATGACTTGTCCAATGC 60.030 45.455 0.00 7.45 37.68 3.56
3955 4858 3.928727 AGCAACATGACTTGTCCAATG 57.071 42.857 0.00 0.00 37.68 2.82
3956 4859 5.477984 ACAATAGCAACATGACTTGTCCAAT 59.522 36.000 0.00 0.00 37.68 3.16
3958 4861 4.216042 CACAATAGCAACATGACTTGTCCA 59.784 41.667 0.00 0.00 37.68 4.02
3959 4862 4.726416 CACAATAGCAACATGACTTGTCC 58.274 43.478 0.00 0.00 37.68 4.02
3960 4863 4.083110 AGCACAATAGCAACATGACTTGTC 60.083 41.667 0.00 0.00 37.68 3.18
3965 4868 2.095110 TGCAGCACAATAGCAACATGAC 60.095 45.455 0.00 0.00 34.97 3.06
3966 4869 2.161030 TGCAGCACAATAGCAACATGA 58.839 42.857 0.00 0.00 34.97 3.07
3967 4870 2.526077 CTGCAGCACAATAGCAACATG 58.474 47.619 0.00 0.00 37.89 3.21
3968 4871 1.475280 CCTGCAGCACAATAGCAACAT 59.525 47.619 8.66 0.00 37.89 2.71
3969 4872 0.883153 CCTGCAGCACAATAGCAACA 59.117 50.000 8.66 0.00 37.89 3.33
3970 4873 1.131883 CTCCTGCAGCACAATAGCAAC 59.868 52.381 8.66 0.00 37.89 4.17
3971 4874 1.456296 CTCCTGCAGCACAATAGCAA 58.544 50.000 8.66 0.00 37.89 3.91
3975 4878 2.584835 AAACCTCCTGCAGCACAATA 57.415 45.000 8.66 0.00 0.00 1.90
3998 4901 8.587608 AGAAATAGCAGTTCCATCAATGAAAAA 58.412 29.630 0.00 0.00 0.00 1.94
3999 4902 8.030692 CAGAAATAGCAGTTCCATCAATGAAAA 58.969 33.333 0.00 0.00 0.00 2.29
4000 4903 7.177216 ACAGAAATAGCAGTTCCATCAATGAAA 59.823 33.333 0.00 0.00 0.00 2.69
4001 4904 6.660521 ACAGAAATAGCAGTTCCATCAATGAA 59.339 34.615 0.00 0.00 0.00 2.57
4002 4905 6.182627 ACAGAAATAGCAGTTCCATCAATGA 58.817 36.000 0.00 0.00 0.00 2.57
4049 4952 2.125952 TCTGCAGCCATGTCGACG 60.126 61.111 9.47 0.00 0.00 5.12
4050 4953 1.079543 ACTCTGCAGCCATGTCGAC 60.080 57.895 9.47 9.11 0.00 4.20
4051 4954 1.079612 CACTCTGCAGCCATGTCGA 60.080 57.895 9.47 0.00 0.00 4.20
4052 4955 2.747822 GCACTCTGCAGCCATGTCG 61.748 63.158 9.47 2.42 44.26 4.35
4104 5018 5.446473 GCTTGTGAATATGAGACGTCAAAGG 60.446 44.000 19.50 0.00 35.88 3.11
4106 5020 4.994217 TGCTTGTGAATATGAGACGTCAAA 59.006 37.500 19.50 5.40 35.88 2.69
4118 5086 2.813754 GTCTGTGCCTTGCTTGTGAATA 59.186 45.455 0.00 0.00 0.00 1.75
4120 5088 1.024271 GTCTGTGCCTTGCTTGTGAA 58.976 50.000 0.00 0.00 0.00 3.18
4121 5089 0.107263 TGTCTGTGCCTTGCTTGTGA 60.107 50.000 0.00 0.00 0.00 3.58
4122 5090 0.740149 TTGTCTGTGCCTTGCTTGTG 59.260 50.000 0.00 0.00 0.00 3.33
4123 5091 1.406539 CTTTGTCTGTGCCTTGCTTGT 59.593 47.619 0.00 0.00 0.00 3.16
4124 5092 1.269413 CCTTTGTCTGTGCCTTGCTTG 60.269 52.381 0.00 0.00 0.00 4.01
4125 5093 1.035139 CCTTTGTCTGTGCCTTGCTT 58.965 50.000 0.00 0.00 0.00 3.91
4126 5094 1.458639 GCCTTTGTCTGTGCCTTGCT 61.459 55.000 0.00 0.00 0.00 3.91
4127 5095 1.006922 GCCTTTGTCTGTGCCTTGC 60.007 57.895 0.00 0.00 0.00 4.01
4128 5096 0.313043 CTGCCTTTGTCTGTGCCTTG 59.687 55.000 0.00 0.00 0.00 3.61
4129 5097 0.183492 TCTGCCTTTGTCTGTGCCTT 59.817 50.000 0.00 0.00 0.00 4.35
4130 5098 0.183492 TTCTGCCTTTGTCTGTGCCT 59.817 50.000 0.00 0.00 0.00 4.75
4131 5099 1.200948 GATTCTGCCTTTGTCTGTGCC 59.799 52.381 0.00 0.00 0.00 5.01
4132 5100 1.135859 CGATTCTGCCTTTGTCTGTGC 60.136 52.381 0.00 0.00 0.00 4.57
4133 5101 2.416747 TCGATTCTGCCTTTGTCTGTG 58.583 47.619 0.00 0.00 0.00 3.66
4134 5102 2.839486 TCGATTCTGCCTTTGTCTGT 57.161 45.000 0.00 0.00 0.00 3.41
4135 5103 2.417933 CCTTCGATTCTGCCTTTGTCTG 59.582 50.000 0.00 0.00 0.00 3.51
4136 5104 2.303022 TCCTTCGATTCTGCCTTTGTCT 59.697 45.455 0.00 0.00 0.00 3.41
4137 5105 2.699954 TCCTTCGATTCTGCCTTTGTC 58.300 47.619 0.00 0.00 0.00 3.18
4138 5106 2.859165 TCCTTCGATTCTGCCTTTGT 57.141 45.000 0.00 0.00 0.00 2.83
4139 5107 3.246226 CGTATCCTTCGATTCTGCCTTTG 59.754 47.826 0.00 0.00 0.00 2.77
4140 5108 3.458189 CGTATCCTTCGATTCTGCCTTT 58.542 45.455 0.00 0.00 0.00 3.11
4141 5109 2.803492 GCGTATCCTTCGATTCTGCCTT 60.803 50.000 0.00 0.00 0.00 4.35
4142 5110 1.269831 GCGTATCCTTCGATTCTGCCT 60.270 52.381 0.00 0.00 0.00 4.75
4143 5111 1.140816 GCGTATCCTTCGATTCTGCC 58.859 55.000 0.00 0.00 0.00 4.85
4144 5112 1.852942 TGCGTATCCTTCGATTCTGC 58.147 50.000 0.00 0.00 0.00 4.26
4153 5121 5.182487 TGTGAAATGTGTATGCGTATCCTT 58.818 37.500 0.00 0.00 0.00 3.36
4171 5139 3.462982 AGATGTTGTAACGTGCTGTGAA 58.537 40.909 0.00 0.00 0.00 3.18
4173 5141 3.878086 AAGATGTTGTAACGTGCTGTG 57.122 42.857 0.00 0.00 0.00 3.66
4205 5182 8.991783 TGTATGTACCTGTAGCTTTCTACTAT 57.008 34.615 0.00 0.00 44.26 2.12
4229 5206 1.447489 CCGCTCTCCTGCTTCACTG 60.447 63.158 0.00 0.00 0.00 3.66
4230 5207 1.910772 ACCGCTCTCCTGCTTCACT 60.911 57.895 0.00 0.00 0.00 3.41
4231 5208 1.739562 CACCGCTCTCCTGCTTCAC 60.740 63.158 0.00 0.00 0.00 3.18
4232 5209 2.210013 ACACCGCTCTCCTGCTTCA 61.210 57.895 0.00 0.00 0.00 3.02
4237 5214 2.262915 GTCCACACCGCTCTCCTG 59.737 66.667 0.00 0.00 0.00 3.86
4240 5217 4.436998 CCCGTCCACACCGCTCTC 62.437 72.222 0.00 0.00 0.00 3.20
4245 5222 1.682451 ATGTATCCCCGTCCACACCG 61.682 60.000 0.00 0.00 0.00 4.94
4247 5224 0.814010 GCATGTATCCCCGTCCACAC 60.814 60.000 0.00 0.00 0.00 3.82
4249 5226 1.594293 CGCATGTATCCCCGTCCAC 60.594 63.158 0.00 0.00 0.00 4.02
4250 5227 2.802724 CCGCATGTATCCCCGTCCA 61.803 63.158 0.00 0.00 0.00 4.02
4251 5228 1.827399 ATCCGCATGTATCCCCGTCC 61.827 60.000 0.00 0.00 0.00 4.79
4253 5230 1.118965 TGATCCGCATGTATCCCCGT 61.119 55.000 0.00 0.00 0.00 5.28
4254 5231 0.670546 GTGATCCGCATGTATCCCCG 60.671 60.000 0.00 0.00 0.00 5.73
4255 5232 0.396435 TGTGATCCGCATGTATCCCC 59.604 55.000 0.00 0.00 0.00 4.81
4258 5235 2.036475 AGACCTGTGATCCGCATGTATC 59.964 50.000 0.00 0.00 0.00 2.24
4260 5237 1.409064 GAGACCTGTGATCCGCATGTA 59.591 52.381 0.00 0.00 0.00 2.29
4267 5266 0.390860 CCGATGGAGACCTGTGATCC 59.609 60.000 0.00 0.00 0.00 3.36
4342 5344 3.075005 ACCATCGGGAGGACCACG 61.075 66.667 0.00 0.00 40.22 4.94
4455 5457 0.908198 AAGGTGTGATCTGAGGAGCC 59.092 55.000 0.00 0.00 0.00 4.70
4557 5559 2.478894 CCAAGGTACATGTCGTGTTCAC 59.521 50.000 0.00 0.00 42.29 3.18
4558 5560 2.761559 CCAAGGTACATGTCGTGTTCA 58.238 47.619 0.00 0.00 42.29 3.18
4559 5561 1.463444 GCCAAGGTACATGTCGTGTTC 59.537 52.381 0.00 0.00 42.29 3.18
4561 5563 0.685097 AGCCAAGGTACATGTCGTGT 59.315 50.000 0.00 2.65 44.95 4.49
4567 5573 1.148157 CGCTCGAGCCAAGGTACATG 61.148 60.000 30.66 9.45 37.91 3.21
4595 5601 2.031516 CCAAGCTGGCGTGTCTCAG 61.032 63.158 7.61 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.