AutoCloner

Multiple sequence alignment - TraesCS2B01G183700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G183700	chr2B	100.000	3757	0	0	1	3757	158641594	158645350	0.000000e+00	6938.0
1	TraesCS2B01G183700	chr2B	91.885	1602	98	19	1424	3023	158780761	158782332	0.000000e+00	2209.0
2	TraesCS2B01G183700	chr2B	85.375	841	81	16	2219	3052	159007082	159007887	0.000000e+00	833.0
3	TraesCS2B01G183700	chr2B	84.590	597	59	19	3183	3757	158782333	158782918	2.530000e-156	562.0
4	TraesCS2B01G183700	chr2B	90.123	243	24	0	3087	3329	159012834	159013076	2.180000e-82	316.0
5	TraesCS2B01G183700	chr2B	81.517	211	29	6	3550	3757	159095821	159096024	8.350000e-37	165.0
6	TraesCS2B01G183700	chr2B	80.000	210	14	11	3349	3534	159013063	159013268	3.050000e-26	130.0
7	TraesCS2B01G183700	chr2A	93.435	3199	139	24	595	3757	104969734	104972897	0.000000e+00	4678.0
8	TraesCS2B01G183700	chr2A	89.643	1120	105	4	861	1976	105032642	105033754	0.000000e+00	1415.0
9	TraesCS2B01G183700	chr2A	93.345	556	21	6	9	556	104969181	104969728	0.000000e+00	808.0
10	TraesCS2B01G183700	chr2A	92.857	504	32	4	2550	3052	105045241	105045741	0.000000e+00	728.0
11	TraesCS2B01G183700	chr2A	92.233	309	24	0	1981	2289	105034085	105034393	4.460000e-119	438.0
12	TraesCS2B01G183700	chr2A	91.329	173	14	1	2376	2547	105043393	105043565	6.270000e-58	235.0
13	TraesCS2B01G183700	chr2A	92.063	126	7	3	496	621	606523809	606523687	1.390000e-39	174.0
14	TraesCS2B01G183700	chr2A	91.473	129	7	3	501	629	729162003	729162127	1.390000e-39	174.0
15	TraesCS2B01G183700	chr2A	89.051	137	11	3	500	636	517417753	517417885	2.320000e-37	167.0
16	TraesCS2B01G183700	chr2A	79.730	148	18	9	3296	3437	75637939	75637798	3.090000e-16	97.1
17	TraesCS2B01G183700	chr2D	89.653	2967	205	51	622	3546	109000517	109003423	0.000000e+00	3685.0
18	TraesCS2B01G183700	chr2D	93.372	1026	61	7	2030	3052	109120414	109121435	0.000000e+00	1511.0
19	TraesCS2B01G183700	chr2D	97.513	764	17	2	2199	2961	109046362	109047124	0.000000e+00	1304.0
20	TraesCS2B01G183700	chr2D	85.073	1293	171	18	928	2203	109043357	109044644	0.000000e+00	1299.0
21	TraesCS2B01G183700	chr2D	88.556	900	96	6	2151	3046	109392189	109393085	0.000000e+00	1085.0
22	TraesCS2B01G183700	chr2D	96.042	480	14	2	1	478	109000000	109000476	0.000000e+00	776.0
23	TraesCS2B01G183700	chr2D	83.624	745	67	26	3051	3757	109121518	109122245	0.000000e+00	649.0
24	TraesCS2B01G183700	chr2D	95.929	393	13	3	2951	3342	109069664	109070054	5.290000e-178	634.0
25	TraesCS2B01G183700	chr2D	95.317	363	17	0	1259	1621	109107346	109107708	9.050000e-161	577.0
26	TraesCS2B01G183700	chr2D	90.217	460	17	3	3326	3757	109070275	109070734	3.250000e-160	575.0
27	TraesCS2B01G183700	chr2D	81.597	739	63	41	3051	3757	109393174	109393871	9.180000e-151	544.0
28	TraesCS2B01G183700	chr2D	91.518	224	18	1	1697	1919	109113269	109113492	1.310000e-79	307.0
29	TraesCS2B01G183700	chr2D	91.935	124	8	2	498	621	437904057	437903936	4.990000e-39	172.0
30	TraesCS2B01G183700	chr2D	90.152	132	9	3	501	632	114520284	114520411	6.450000e-38	169.0
31	TraesCS2B01G183700	chr5A	90.840	131	9	2	499	629	649239247	649239374	4.990000e-39	172.0
32	TraesCS2B01G183700	chr4D	89.781	137	10	3	493	628	494876038	494875905	4.990000e-39	172.0
33	TraesCS2B01G183700	chr5D	90.226	133	8	4	500	631	461071642	461071770	6.450000e-38	169.0
34	TraesCS2B01G183700	chr5D	81.421	183	27	5	3296	3475	82307115	82307293	3.910000e-30	143.0
35	TraesCS2B01G183700	chr6D	90.076	131	9	3	495	625	450262708	450262834	2.320000e-37	167.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G183700	chr2B	158641594	158645350	3756	False	6938.0	6938	100.0000	1	3757	1	chr2B.!!$F1	3756
1	TraesCS2B01G183700	chr2B	158780761	158782918	2157	False	1385.5	2209	88.2375	1424	3757	2	chr2B.!!$F4	2333
2	TraesCS2B01G183700	chr2B	159007082	159007887	805	False	833.0	833	85.3750	2219	3052	1	chr2B.!!$F2	833
3	TraesCS2B01G183700	chr2A	104969181	104972897	3716	False	2743.0	4678	93.3900	9	3757	2	chr2A.!!$F3	3748
4	TraesCS2B01G183700	chr2A	105032642	105034393	1751	False	926.5	1415	90.9380	861	2289	2	chr2A.!!$F4	1428
5	TraesCS2B01G183700	chr2A	105043393	105045741	2348	False	481.5	728	92.0930	2376	3052	2	chr2A.!!$F5	676
6	TraesCS2B01G183700	chr2D	109000000	109003423	3423	False	2230.5	3685	92.8475	1	3546	2	chr2D.!!$F4	3545
7	TraesCS2B01G183700	chr2D	109043357	109047124	3767	False	1301.5	1304	91.2930	928	2961	2	chr2D.!!$F5	2033
8	TraesCS2B01G183700	chr2D	109120414	109122245	1831	False	1080.0	1511	88.4980	2030	3757	2	chr2D.!!$F7	1727
9	TraesCS2B01G183700	chr2D	109392189	109393871	1682	False	814.5	1085	85.0765	2151	3757	2	chr2D.!!$F8	1606
10	TraesCS2B01G183700	chr2D	109069664	109070734	1070	False	604.5	634	93.0730	2951	3757	2	chr2D.!!$F6	806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
594	613	0.251165	TAAGGCACAAGCTTGGTCCC	60.251	55.0	29.18	23.38	41.7	4.46	F
1112	1145	0.235926	GCTCTCAACTCAACCGCAAC	59.764	55.0	0.00	0.00	0.0	4.17	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2398	4512	0.106708	GTAGGCGGCTCCATCATTCA	59.893	55.0	17.67	0.00	37.29	2.57	R
2951	6743	0.883153	TGTGGTTGTGCATGCTGATC	59.117	50.0	20.33	5.57	0.00	2.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
89	90	0.885879	ATCAGCGAACGTGTGGTCTA	59.114	50.000	0.00	0.00	0.00	2.59
94	97	2.735134	AGCGAACGTGTGGTCTATTTTC	59.265	45.455	0.00	0.00	0.00	2.29
181	184	1.153706	GCCCGTCGCAAGTAGCTTA	60.154	57.895	0.00	0.00	42.61	3.09
244	247	1.984297	GAAGCCGTCGTCTTTGTACTC	59.016	52.381	0.00	0.00	0.00	2.59
245	248	1.245732	AGCCGTCGTCTTTGTACTCT	58.754	50.000	0.00	0.00	0.00	3.24
246	249	1.612463	AGCCGTCGTCTTTGTACTCTT	59.388	47.619	0.00	0.00	0.00	2.85
247	250	1.984297	GCCGTCGTCTTTGTACTCTTC	59.016	52.381	0.00	0.00	0.00	2.87
430	433	0.478507	CACCCCCTGGTCTGTCTTTT	59.521	55.000	0.00	0.00	45.57	2.27
550	569	4.999950	CCTCAAATGGATGTATCTAGCACC	59.000	45.833	0.00	0.00	0.00	5.01
552	571	6.000246	TCAAATGGATGTATCTAGCACCAA	58.000	37.500	0.00	0.00	0.00	3.67
553	572	6.057533	TCAAATGGATGTATCTAGCACCAAG	58.942	40.000	0.00	0.00	0.00	3.61
556	575	6.747414	ATGGATGTATCTAGCACCAAGTTA	57.253	37.500	0.00	0.00	0.00	2.24
557	576	6.161855	TGGATGTATCTAGCACCAAGTTAG	57.838	41.667	0.00	0.00	32.79	2.34
558	577	5.661312	TGGATGTATCTAGCACCAAGTTAGT	59.339	40.000	0.00	0.00	33.25	2.24
559	578	5.986135	GGATGTATCTAGCACCAAGTTAGTG	59.014	44.000	0.00	0.00	38.30	2.74
571	590	5.986135	CACCAAGTTAGTGCTAGATACATCC	59.014	44.000	0.00	0.00	0.00	3.51
572	591	5.661312	ACCAAGTTAGTGCTAGATACATCCA	59.339	40.000	0.00	0.00	0.00	3.41
573	592	6.327626	ACCAAGTTAGTGCTAGATACATCCAT	59.672	38.462	0.00	0.00	0.00	3.41
574	593	7.147479	ACCAAGTTAGTGCTAGATACATCCATT	60.147	37.037	0.00	0.00	0.00	3.16
575	594	7.716998	CCAAGTTAGTGCTAGATACATCCATTT	59.283	37.037	0.00	0.00	0.00	2.32
576	595	9.764363	CAAGTTAGTGCTAGATACATCCATTTA	57.236	33.333	0.00	0.00	0.00	1.40
578	597	9.988815	AGTTAGTGCTAGATACATCCATTTAAG	57.011	33.333	0.00	0.00	0.00	1.85
579	598	9.209175	GTTAGTGCTAGATACATCCATTTAAGG	57.791	37.037	0.00	0.00	0.00	2.69
580	599	6.234177	AGTGCTAGATACATCCATTTAAGGC	58.766	40.000	0.00	0.00	0.00	4.35
581	600	5.997746	GTGCTAGATACATCCATTTAAGGCA	59.002	40.000	0.00	0.00	0.00	4.75
582	601	5.997746	TGCTAGATACATCCATTTAAGGCAC	59.002	40.000	0.00	0.00	0.00	5.01
583	602	5.997746	GCTAGATACATCCATTTAAGGCACA	59.002	40.000	0.00	0.00	0.00	4.57
584	603	6.486657	GCTAGATACATCCATTTAAGGCACAA	59.513	38.462	0.00	0.00	0.00	3.33
585	604	6.949352	AGATACATCCATTTAAGGCACAAG	57.051	37.500	0.00	0.00	0.00	3.16
586	605	3.874392	ACATCCATTTAAGGCACAAGC	57.126	42.857	0.00	0.00	41.10	4.01
587	606	3.434309	ACATCCATTTAAGGCACAAGCT	58.566	40.909	0.00	0.00	41.70	3.74
588	607	3.834231	ACATCCATTTAAGGCACAAGCTT	59.166	39.130	0.00	0.00	41.70	3.74
589	608	3.940209	TCCATTTAAGGCACAAGCTTG	57.060	42.857	24.84	24.84	41.70	4.01
590	609	2.562298	TCCATTTAAGGCACAAGCTTGG	59.438	45.455	29.18	18.79	41.70	3.61
591	610	2.299867	CCATTTAAGGCACAAGCTTGGT	59.700	45.455	29.18	12.92	41.70	3.67
592	611	3.578688	CATTTAAGGCACAAGCTTGGTC	58.421	45.455	29.18	19.22	41.70	4.02
593	612	1.616159	TTAAGGCACAAGCTTGGTCC	58.384	50.000	29.18	26.09	41.70	4.46
594	613	0.251165	TAAGGCACAAGCTTGGTCCC	60.251	55.000	29.18	23.38	41.70	4.46
595	614	2.203480	GGCACAAGCTTGGTCCCA	60.203	61.111	29.18	0.00	41.70	4.37
596	615	1.832167	GGCACAAGCTTGGTCCCAA	60.832	57.895	29.18	0.00	41.70	4.12
624	643	0.911769	TCGGACGGAGGGAGTAGTAA	59.088	55.000	0.00	0.00	0.00	2.24
661	688	9.741647	GAGAATCTCTGAATTGTTTGAGTTTTT	57.258	29.630	2.45	0.00	0.00	1.94
862	894	8.774586	CAGCTTTCAGTATACACTAGTTTTGTT	58.225	33.333	5.50	0.00	32.21	2.83
1019	1052	1.180029	ATGGTGATCCTTTGTGCTGC	58.820	50.000	0.00	0.00	34.23	5.25
1112	1145	0.235926	GCTCTCAACTCAACCGCAAC	59.764	55.000	0.00	0.00	0.00	4.17
1136	1169	3.951979	ACTCAGAAAGCAAAACAGACG	57.048	42.857	0.00	0.00	0.00	4.18
1146	1179	0.244450	AAAACAGACGTCGGCGGATA	59.756	50.000	16.39	0.00	43.45	2.59
1154	1187	3.565482	AGACGTCGGCGGATAATTACTTA	59.435	43.478	16.39	0.00	43.45	2.24
1170	1203	7.831750	AATTACTTACGCAAAAAGTTCTTCG	57.168	32.000	1.21	0.00	38.18	3.79
1192	1230	7.818997	TCGTTACAAGGTATGTCTCATAGAT	57.181	36.000	0.00	0.00	42.70	1.98
1206	1244	9.703892	ATGTCTCATAGATATTAAGCAGAACAC	57.296	33.333	0.00	0.00	0.00	3.32
1214	1252	6.703607	AGATATTAAGCAGAACACCTCATTCG	59.296	38.462	0.00	0.00	0.00	3.34
1270	1313	7.084486	GCTGGAAAATTTACAGTAGTTCCTTG	58.916	38.462	18.22	7.25	36.35	3.61
1354	1402	7.870588	ACGTTCTTCTTGTATTTACTCAGAC	57.129	36.000	0.00	0.00	0.00	3.51
1356	1404	6.310711	CGTTCTTCTTGTATTTACTCAGACCC	59.689	42.308	0.00	0.00	0.00	4.46
1472	1534	6.065374	TGAATTTGTGGCTGAACCTAAACTA	58.935	36.000	0.00	0.00	40.22	2.24
1621	1684	8.964533	AATAGTGTCCCTGATGAGATACTATT	57.035	34.615	13.23	13.23	45.15	1.73
1798	1861	1.228552	GGGACCAACCTGCACATGT	60.229	57.895	0.00	0.00	38.98	3.21
1808	1871	2.191354	CTGCACATGTCACCAAGCCG	62.191	60.000	0.00	0.00	0.00	5.52
1848	1911	6.480524	TTCAAAGTGGTTCAGTTGATATCG	57.519	37.500	0.00	0.00	0.00	2.92
1874	1937	4.967036	CCTTTAAAGGTCCCAAATTGCAA	58.033	39.130	23.89	0.00	41.41	4.08
1914	1977	1.207089	TCGGCCTTGAATCAGGTACAG	59.793	52.381	0.00	0.00	36.15	2.74
1957	2020	2.094675	GTGCAAATATGTGCCAGTCCT	58.905	47.619	15.40	0.00	44.26	3.85
1965	2030	7.607991	GCAAATATGTGCCAGTCCTTACTATAT	59.392	37.037	6.61	0.00	38.66	0.86
1994	2385	3.019564	CCCACCTCACCTGATGAAAATC	58.980	50.000	0.00	0.00	36.69	2.17
2000	2391	6.208204	CACCTCACCTGATGAAAATCTTCTTT	59.792	38.462	0.00	0.00	36.69	2.52
2081	2472	2.425143	TGAAAGTGATCCATGGAGCC	57.575	50.000	26.62	17.44	0.00	4.70
2119	2510	1.072331	TCTTGAGGGAACACTTGAGCC	59.928	52.381	0.00	0.00	0.00	4.70
2156	2547	1.400113	CGGTACACGTTCGACAAGCTA	60.400	52.381	0.00	0.00	37.93	3.32
2255	4368	4.226846	AGCATTTCTGATCTTCAAGAGGGA	59.773	41.667	0.00	0.00	0.00	4.20
2309	4423	6.097412	GCATTAAGGAATTGAAGGAAGATGGT	59.903	38.462	0.00	0.00	0.00	3.55
2899	6691	1.047596	GCAGGGGATCAGCTCAGAGA	61.048	60.000	0.00	0.00	0.00	3.10
2951	6743	6.132791	TGAGCCTACTAGTAACTTCATTCG	57.867	41.667	3.76	0.00	0.00	3.34
3059	6939	0.179032	ACATTTCTGGCCGTGACACA	60.179	50.000	6.37	0.00	0.00	3.72

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
14	15	9.562583	TGGTGTTAAAAACATAATAAGCGATTC	57.437	29.630	0.00	0.00	44.35	2.52
94	97	3.508840	GCGCTGGTTTCCATCGGG	61.509	66.667	12.63	2.00	42.45	5.14
244	247	4.899352	TCTGGGGAAGAAGAAGAAGAAG	57.101	45.455	0.00	0.00	29.54	2.85
245	248	5.097234	AGATCTGGGGAAGAAGAAGAAGAA	58.903	41.667	0.00	0.00	38.79	2.52
246	249	4.693420	AGATCTGGGGAAGAAGAAGAAGA	58.307	43.478	0.00	0.00	38.79	2.87
247	250	5.427378	GAAGATCTGGGGAAGAAGAAGAAG	58.573	45.833	0.00	0.00	38.79	2.85
326	329	0.606673	GGTGGAGTGAGGAGTTTGGC	60.607	60.000	0.00	0.00	0.00	4.52
430	433	9.896645	AGCTAAAATATCTGAATCTGAACTTCA	57.103	29.630	0.00	0.00	0.00	3.02
550	569	8.668510	AAATGGATGTATCTAGCACTAACTTG	57.331	34.615	0.00	0.00	0.00	3.16
552	571	9.988815	CTTAAATGGATGTATCTAGCACTAACT	57.011	33.333	0.00	0.00	0.00	2.24
553	572	9.209175	CCTTAAATGGATGTATCTAGCACTAAC	57.791	37.037	0.00	0.00	0.00	2.34
556	575	6.183361	TGCCTTAAATGGATGTATCTAGCACT	60.183	38.462	0.00	0.00	0.00	4.40
557	576	5.997746	TGCCTTAAATGGATGTATCTAGCAC	59.002	40.000	0.00	0.00	0.00	4.40
558	577	5.997746	GTGCCTTAAATGGATGTATCTAGCA	59.002	40.000	0.00	0.00	0.00	3.49
559	578	5.997746	TGTGCCTTAAATGGATGTATCTAGC	59.002	40.000	0.00	0.00	0.00	3.42
561	580	6.486657	GCTTGTGCCTTAAATGGATGTATCTA	59.513	38.462	0.00	0.00	0.00	1.98
564	583	5.203528	AGCTTGTGCCTTAAATGGATGTAT	58.796	37.500	0.00	0.00	40.80	2.29
565	584	4.599041	AGCTTGTGCCTTAAATGGATGTA	58.401	39.130	0.00	0.00	40.80	2.29
566	585	3.434309	AGCTTGTGCCTTAAATGGATGT	58.566	40.909	0.00	0.00	40.80	3.06
567	586	4.178540	CAAGCTTGTGCCTTAAATGGATG	58.821	43.478	18.65	0.00	40.80	3.51
568	587	3.196254	CCAAGCTTGTGCCTTAAATGGAT	59.804	43.478	24.35	0.00	40.80	3.41
569	588	2.562298	CCAAGCTTGTGCCTTAAATGGA	59.438	45.455	24.35	0.00	40.80	3.41
570	589	2.299867	ACCAAGCTTGTGCCTTAAATGG	59.700	45.455	24.35	8.35	40.80	3.16
571	590	3.578688	GACCAAGCTTGTGCCTTAAATG	58.421	45.455	24.35	7.95	40.80	2.32
572	591	2.562738	GGACCAAGCTTGTGCCTTAAAT	59.437	45.455	24.35	0.00	40.80	1.40
573	592	1.960689	GGACCAAGCTTGTGCCTTAAA	59.039	47.619	24.35	0.00	40.80	1.52
574	593	1.616159	GGACCAAGCTTGTGCCTTAA	58.384	50.000	24.35	0.00	40.80	1.85
575	594	0.251165	GGGACCAAGCTTGTGCCTTA	60.251	55.000	24.35	0.00	40.80	2.69
576	595	1.531602	GGGACCAAGCTTGTGCCTT	60.532	57.895	24.35	3.77	40.80	4.35
577	596	2.116125	GGGACCAAGCTTGTGCCT	59.884	61.111	24.35	4.40	40.80	4.75
578	597	1.809567	CTTGGGACCAAGCTTGTGCC	61.810	60.000	24.35	23.70	45.38	5.01
579	598	1.662044	CTTGGGACCAAGCTTGTGC	59.338	57.895	24.35	16.64	45.38	4.57
610	629	4.922103	GCGAATAAATTACTACTCCCTCCG	59.078	45.833	0.00	0.00	0.00	4.63
624	643	5.201713	TCAGAGATTCTCCGCGAATAAAT	57.798	39.130	8.23	1.20	42.31	1.40
661	688	2.144730	CCACCGTACCAATCGACAAAA	58.855	47.619	0.00	0.00	0.00	2.44
838	870	8.989980	AGAACAAAACTAGTGTATACTGAAAGC	58.010	33.333	1.82	0.00	37.60	3.51
862	894	8.461222	CAAAATCAATAGCAACCATAACAGAGA	58.539	33.333	0.00	0.00	0.00	3.10
1112	1145	4.730521	GTCTGTTTTGCTTTCTGAGTTTCG	59.269	41.667	0.00	0.00	0.00	3.46
1136	1169	2.406357	GCGTAAGTAATTATCCGCCGAC	59.594	50.000	6.66	0.00	41.68	4.79
1146	1179	7.412063	ACGAAGAACTTTTTGCGTAAGTAATT	58.588	30.769	0.00	0.00	42.91	1.40
1154	1187	4.603231	TGTAACGAAGAACTTTTTGCGT	57.397	36.364	0.00	0.00	0.00	5.24
1192	1230	5.116180	CCGAATGAGGTGTTCTGCTTAATA	58.884	41.667	0.00	0.00	0.00	0.98
1206	1244	7.787725	AAACTAATTTAGCTACCGAATGAGG	57.212	36.000	3.28	0.00	37.30	3.86
1214	1252	5.125578	AGCAGGCAAAACTAATTTAGCTACC	59.874	40.000	3.28	0.00	0.00	3.18
1250	1293	7.255836	GCTTCCCAAGGAACTACTGTAAATTTT	60.256	37.037	0.00	0.00	38.49	1.82
1270	1313	9.836864	AAATTTCCAAAGAATATATTGCTTCCC	57.163	29.630	1.78	0.00	0.00	3.97
1354	1402	1.879796	GCCATTAAGAGCATCCGAGGG	60.880	57.143	0.00	0.00	33.66	4.30
1356	1404	1.071385	AGGCCATTAAGAGCATCCGAG	59.929	52.381	5.01	0.00	33.66	4.63
1386	1434	6.317642	TGAACAGTACTGCTACACAACATTTT	59.682	34.615	22.90	4.57	0.00	1.82
1511	1573	5.076182	TCTGGACAATGCAATGAAAGGTAA	58.924	37.500	9.20	0.00	0.00	2.85
1798	1861	2.156098	GGAATTGTAACGGCTTGGTGA	58.844	47.619	0.00	0.00	0.00	4.02
1808	1871	7.438160	CCACTTTGAAAAGGAAGGAATTGTAAC	59.562	37.037	7.65	0.00	40.31	2.50
1874	1937	6.405842	GGCCGATCCAGATTTCTTTAATTGTT	60.406	38.462	0.00	0.00	34.01	2.83
1880	1943	4.080582	TCAAGGCCGATCCAGATTTCTTTA	60.081	41.667	0.00	0.00	37.29	1.85
1914	1977	5.047235	ACAGAACAGACAACTAGGTGGATAC	60.047	44.000	13.49	0.73	0.00	2.24
1957	2020	9.317827	GGTGAGGTGGGTAGATTAATATAGTAA	57.682	37.037	0.00	0.00	0.00	2.24
1965	2030	4.069312	TCAGGTGAGGTGGGTAGATTAA	57.931	45.455	0.00	0.00	0.00	1.40
1970	2035	1.866015	TCATCAGGTGAGGTGGGTAG	58.134	55.000	0.00	0.00	31.80	3.18
1977	2042	6.127786	GGAAAGAAGATTTTCATCAGGTGAGG	60.128	42.308	0.00	0.00	38.51	3.86
2012	2403	9.321562	GAACCTGATCTTCAACGGTAATATTAA	57.678	33.333	0.00	0.00	0.00	1.40
2013	2404	8.479689	TGAACCTGATCTTCAACGGTAATATTA	58.520	33.333	0.00	0.00	0.00	0.98
2081	2472	4.122776	CAAGATCTTCAGGTGTATTCCGG	58.877	47.826	4.57	0.00	0.00	5.14
2119	2510	0.515564	CCGTAAACCGCTGAACTTGG	59.484	55.000	0.00	0.00	34.38	3.61
2137	2528	2.248487	CTAGCTTGTCGAACGTGTACC	58.752	52.381	0.00	0.00	0.00	3.34
2156	2547	4.254709	TCACCAAGCAGCGCACCT	62.255	61.111	11.47	1.13	0.00	4.00
2255	4368	2.568956	TGTCTTTGCTGAGGATAGCTGT	59.431	45.455	0.00	0.00	44.01	4.40
2309	4423	3.117360	TGAGATCAGCATACTCCCTCAGA	60.117	47.826	0.00	0.00	0.00	3.27
2398	4512	0.106708	GTAGGCGGCTCCATCATTCA	59.893	55.000	17.67	0.00	37.29	2.57
2951	6743	0.883153	TGTGGTTGTGCATGCTGATC	59.117	50.000	20.33	5.57	0.00	2.92
3059	6939	2.981921	TGAGGTATCTGGCATCTCCAT	58.018	47.619	0.00	0.00	45.50	3.41
3181	7061	3.622060	AATTGCCCGGGACAGTCGG	62.622	63.158	29.31	0.00	46.43	4.79
3376	7500	6.425114	TGAATCTGCTTTCTTTAGTGTCTGAC	59.575	38.462	0.00	0.00	0.00	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.