Multiple sequence alignment - TraesCS2B01G182700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G182700 chr2B 100.000 7026 0 0 1 7026 157645811 157638786 0.000000e+00 12975.0
1 TraesCS2B01G182700 chr2B 88.947 190 15 5 6405 6594 23790343 23790526 5.480000e-56 230.0
2 TraesCS2B01G182700 chr2B 89.412 85 9 0 6320 6404 764502102 764502018 2.680000e-19 108.0
3 TraesCS2B01G182700 chr2A 95.736 3307 105 18 2932 6222 103731659 103728373 0.000000e+00 5293.0
4 TraesCS2B01G182700 chr2A 90.492 2093 85 36 1 2040 103734585 103732554 0.000000e+00 2658.0
5 TraesCS2B01G182700 chr2A 88.757 1681 156 24 4459 6116 103813000 103811330 0.000000e+00 2026.0
6 TraesCS2B01G182700 chr2A 88.228 841 44 15 2047 2873 103732470 103731671 0.000000e+00 953.0
7 TraesCS2B01G182700 chr2A 90.300 433 31 7 1169 1600 103818385 103817963 2.210000e-154 556.0
8 TraesCS2B01G182700 chr2A 88.248 451 41 7 3871 4311 103813492 103813044 4.830000e-146 529.0
9 TraesCS2B01G182700 chr2D 91.226 3385 141 59 1 3318 107407221 107403926 0.000000e+00 4462.0
10 TraesCS2B01G182700 chr2D 96.618 1981 47 9 4343 6312 107402871 107400900 0.000000e+00 3269.0
11 TraesCS2B01G182700 chr2D 85.965 2280 234 45 3879 6120 107463113 107460882 0.000000e+00 2359.0
12 TraesCS2B01G182700 chr2D 96.612 974 31 2 3371 4342 107403928 107402955 0.000000e+00 1615.0
13 TraesCS2B01G182700 chr2D 89.182 379 37 2 6569 6947 421479831 421479457 2.970000e-128 470.0
14 TraesCS2B01G182700 chr2D 94.253 174 6 3 6399 6572 161907021 161906852 5.400000e-66 263.0
15 TraesCS2B01G182700 chr2D 92.818 181 9 3 6392 6572 426427977 426427801 6.990000e-65 259.0
16 TraesCS2B01G182700 chr2D 91.429 175 12 2 6398 6572 457643999 457644170 3.280000e-58 237.0
17 TraesCS2B01G182700 chr2D 97.647 85 1 1 6942 7025 178275939 178276023 2.040000e-30 145.0
18 TraesCS2B01G182700 chr6B 92.325 456 33 2 6569 7023 646266502 646266956 0.000000e+00 647.0
19 TraesCS2B01G182700 chr6B 88.976 381 35 5 6572 6947 345631915 345632293 1.380000e-126 464.0
20 TraesCS2B01G182700 chr6B 94.340 53 3 0 6320 6372 646266432 646266484 1.620000e-11 82.4
21 TraesCS2B01G182700 chr6D 95.000 380 17 2 6569 6947 412058317 412058695 4.690000e-166 595.0
22 TraesCS2B01G182700 chr6D 93.158 380 23 3 6569 6947 437781344 437780967 7.960000e-154 555.0
23 TraesCS2B01G182700 chr6D 93.296 179 8 3 6398 6576 392896968 392897142 1.940000e-65 261.0
24 TraesCS2B01G182700 chr6D 96.471 85 2 1 6942 7025 412058885 412058969 9.500000e-29 139.0
25 TraesCS2B01G182700 chr6D 96.471 85 2 1 6942 7025 437780777 437780693 9.500000e-29 139.0
26 TraesCS2B01G182700 chr6D 92.222 90 7 0 6320 6409 437781427 437781338 2.060000e-25 128.0
27 TraesCS2B01G182700 chr3D 92.612 379 25 3 6569 6947 441425357 441424982 6.200000e-150 542.0
28 TraesCS2B01G182700 chr3D 89.447 199 12 8 6405 6600 611185657 611185849 7.040000e-60 243.0
29 TraesCS2B01G182700 chr3D 97.647 85 1 1 6942 7025 441424660 441424576 2.040000e-30 145.0
30 TraesCS2B01G182700 chr3D 97.647 85 1 1 6942 7025 441424792 441424708 2.040000e-30 145.0
31 TraesCS2B01G182700 chr3D 90.000 90 9 0 6320 6409 441425440 441425351 4.450000e-22 117.0
32 TraesCS2B01G182700 chr1D 92.084 379 29 1 6569 6947 10585303 10584926 3.730000e-147 532.0
33 TraesCS2B01G182700 chr1D 94.286 175 6 3 6401 6575 178466473 178466303 1.500000e-66 265.0
34 TraesCS2B01G182700 chr1D 92.350 183 10 3 6397 6579 206955708 206955530 2.510000e-64 257.0
35 TraesCS2B01G182700 chr1D 89.474 190 13 6 6405 6594 330535131 330534949 4.240000e-57 233.0
36 TraesCS2B01G182700 chr1D 97.647 85 1 1 6942 7025 10584736 10584652 2.040000e-30 145.0
37 TraesCS2B01G182700 chr5B 91.293 379 31 2 6569 6947 289561635 289561259 3.760000e-142 516.0
38 TraesCS2B01G182700 chr5B 93.785 177 8 2 6402 6578 93472098 93472271 5.400000e-66 263.0
39 TraesCS2B01G182700 chr5B 88.235 204 16 6 6405 6607 162728589 162728393 3.280000e-58 237.0
40 TraesCS2B01G182700 chr5B 89.011 91 9 1 6319 6409 289561718 289561629 2.070000e-20 111.0
41 TraesCS2B01G182700 chr5D 90.501 379 35 1 6569 6947 379391266 379390889 3.780000e-137 499.0
42 TraesCS2B01G182700 chr4A 93.785 177 7 3 6400 6576 357678601 357678773 5.400000e-66 263.0
43 TraesCS2B01G182700 chr4A 89.000 200 14 7 6398 6594 688599432 688599626 2.530000e-59 241.0
44 TraesCS2B01G182700 chr3A 94.253 174 7 2 6401 6574 744441342 744441172 5.400000e-66 263.0
45 TraesCS2B01G182700 chr4D 93.750 176 7 3 6401 6576 75782220 75782049 1.940000e-65 261.0
46 TraesCS2B01G182700 chr3B 90.426 188 11 6 6405 6591 166002272 166002453 2.530000e-59 241.0
47 TraesCS2B01G182700 chr4B 89.005 191 15 5 6404 6594 395819381 395819197 1.520000e-56 231.0
48 TraesCS2B01G182700 chr4B 96.471 85 2 1 6942 7025 437159858 437159942 9.500000e-29 139.0
49 TraesCS2B01G182700 chr5A 91.667 168 11 2 6405 6572 110665250 110665414 5.480000e-56 230.0
50 TraesCS2B01G182700 chr7D 96.471 85 2 1 6942 7025 19212033 19211949 9.500000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G182700 chr2B 157638786 157645811 7025 True 12975.000000 12975 100.000000 1 7026 1 chr2B.!!$R1 7025
1 TraesCS2B01G182700 chr2A 103728373 103734585 6212 True 2968.000000 5293 91.485333 1 6222 3 chr2A.!!$R2 6221
2 TraesCS2B01G182700 chr2A 103811330 103813492 2162 True 1277.500000 2026 88.502500 3871 6116 2 chr2A.!!$R3 2245
3 TraesCS2B01G182700 chr2D 107400900 107407221 6321 True 3115.333333 4462 94.818667 1 6312 3 chr2D.!!$R5 6311
4 TraesCS2B01G182700 chr2D 107460882 107463113 2231 True 2359.000000 2359 85.965000 3879 6120 1 chr2D.!!$R1 2241
5 TraesCS2B01G182700 chr6B 646266432 646266956 524 False 364.700000 647 93.332500 6320 7023 2 chr6B.!!$F2 703
6 TraesCS2B01G182700 chr6D 412058317 412058969 652 False 367.000000 595 95.735500 6569 7025 2 chr6D.!!$F2 456
7 TraesCS2B01G182700 chr6D 437780693 437781427 734 True 274.000000 555 93.950333 6320 7025 3 chr6D.!!$R1 705
8 TraesCS2B01G182700 chr3D 441424576 441425440 864 True 237.250000 542 94.476500 6320 7025 4 chr3D.!!$R1 705
9 TraesCS2B01G182700 chr1D 10584652 10585303 651 True 338.500000 532 94.865500 6569 7025 2 chr1D.!!$R4 456


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
979 1032 0.988063 AACTCTTCTTCTCTGCCCCC 59.012 55.0 0.00 0.00 0.00 5.40 F
2322 2491 0.171231 TCAACGTCTGGCATCGAGAG 59.829 55.0 16.62 7.66 0.00 3.20 F
2469 2638 0.331616 AAGTATGTGGGCCCCAACTC 59.668 55.0 22.27 7.32 34.18 3.01 F
3513 3694 1.051556 GGGTGGCCTCCCAAACAAAA 61.052 55.0 33.75 0.00 44.33 2.44 F
4416 4700 2.231721 ACTAAGGCGAGAAAGTCAGGAC 59.768 50.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2727 2896 0.034186 TGTCCAATGGTCTCCATGGC 60.034 55.000 6.96 0.00 44.40 4.40 R
3460 3641 0.098728 GGTACATGTGCACGCCAATC 59.901 55.000 16.11 0.94 0.00 2.67 R
4347 4631 1.210478 CGAATGAGGTCAGGGAATGGT 59.790 52.381 0.00 0.00 0.00 3.55 R
4864 5151 1.143277 TCCAGCGGTTCCTTGGTTTAA 59.857 47.619 8.39 0.00 33.65 1.52 R
6274 6587 0.461870 GCTCCACAGACACACACACA 60.462 55.000 0.00 0.00 0.00 3.72 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.814793 TTTAAGGTGCGTGCTATGCA 58.185 45.000 0.00 0.00 37.87 3.96
85 86 1.437573 CGGCAGCCGTTAGATCTGA 59.562 57.895 26.69 0.00 42.73 3.27
144 169 6.922957 TGCAGAAACCTTTTTCAACATATGTC 59.077 34.615 9.23 0.00 43.29 3.06
378 406 6.072175 TGCGGAAGAAATTTTTACAGCATAGT 60.072 34.615 10.86 0.00 0.00 2.12
445 473 4.944619 TTGCAATATGGGTGTTGTTGAA 57.055 36.364 0.00 0.00 0.00 2.69
452 480 7.605449 CAATATGGGTGTTGTTGAAGAAGAAT 58.395 34.615 0.00 0.00 0.00 2.40
478 506 1.562942 ACAGCACAGATGATGGTCCAT 59.437 47.619 3.26 3.26 46.89 3.41
490 518 5.735285 TGATGGTCCATAAAACAAATGCA 57.265 34.783 3.72 0.00 0.00 3.96
492 521 5.245751 TGATGGTCCATAAAACAAATGCAGT 59.754 36.000 3.72 0.00 0.00 4.40
538 568 1.686052 ACATGGACGTTGTTGCCAAAT 59.314 42.857 0.00 0.00 34.95 2.32
542 572 4.592485 TGGACGTTGTTGCCAAATAAAT 57.408 36.364 0.00 0.00 30.94 1.40
599 634 3.205815 TTGGCAGAAACAGGCAAGT 57.794 47.368 0.00 0.00 45.10 3.16
612 647 2.096218 CAGGCAAGTAAAGACAAGCGTC 60.096 50.000 0.00 0.00 42.95 5.19
638 673 4.194720 GAGGCAGCGGACGATCGT 62.195 66.667 22.97 22.97 0.00 3.73
651 688 2.202932 ATCGTGTGATCCGCCAGC 60.203 61.111 0.00 0.00 0.00 4.85
678 715 3.367025 ACGAAGCGTTTCCGATCTTTTAG 59.633 43.478 6.41 0.00 36.35 1.85
679 716 3.241995 CGAAGCGTTTCCGATCTTTTAGG 60.242 47.826 6.41 0.00 35.63 2.69
745 782 4.394920 CACGACCCAAATGCTATGTTTACT 59.605 41.667 0.00 0.00 0.00 2.24
750 787 6.924111 ACCCAAATGCTATGTTTACTCAAAG 58.076 36.000 0.00 0.00 0.00 2.77
974 1027 2.985809 CAGTCGCAACTCTTCTTCTCTG 59.014 50.000 0.00 0.00 31.71 3.35
978 1031 1.948144 GCAACTCTTCTTCTCTGCCCC 60.948 57.143 0.00 0.00 0.00 5.80
979 1032 0.988063 AACTCTTCTTCTCTGCCCCC 59.012 55.000 0.00 0.00 0.00 5.40
980 1033 1.261238 ACTCTTCTTCTCTGCCCCCG 61.261 60.000 0.00 0.00 0.00 5.73
981 1034 2.124942 CTTCTTCTCTGCCCCCGC 60.125 66.667 0.00 0.00 0.00 6.13
982 1035 3.689002 CTTCTTCTCTGCCCCCGCC 62.689 68.421 0.00 0.00 0.00 6.13
1271 1339 0.460109 CATCTCGTGGTTCATCGGCA 60.460 55.000 0.00 0.00 0.00 5.69
1405 1473 3.127533 GTCTGGGCGTGCATGGTC 61.128 66.667 8.27 0.00 0.00 4.02
1600 1668 2.306805 TGAGCTGGAGGTGATCACAATT 59.693 45.455 26.47 11.87 0.00 2.32
1602 1670 3.350833 AGCTGGAGGTGATCACAATTTC 58.649 45.455 26.47 16.65 0.00 2.17
1612 1680 7.410174 AGGTGATCACAATTTCTTACCCATTA 58.590 34.615 26.47 0.00 0.00 1.90
1706 1781 3.541632 TCTCTTTGTTCTTTTGCGAGGT 58.458 40.909 0.00 0.00 0.00 3.85
1918 1995 6.887376 TTTCATTCTGCTGAACGATACTAC 57.113 37.500 8.32 0.00 34.96 2.73
1919 1996 5.836821 TCATTCTGCTGAACGATACTACT 57.163 39.130 8.32 0.00 34.71 2.57
1920 1997 6.937436 TCATTCTGCTGAACGATACTACTA 57.063 37.500 8.32 0.00 34.71 1.82
1921 1998 7.511959 TCATTCTGCTGAACGATACTACTAT 57.488 36.000 8.32 0.00 34.71 2.12
1922 1999 7.941919 TCATTCTGCTGAACGATACTACTATT 58.058 34.615 8.32 0.00 34.71 1.73
1923 2000 9.063615 TCATTCTGCTGAACGATACTACTATTA 57.936 33.333 8.32 0.00 34.71 0.98
1951 2028 2.189521 CACGACTGCCCCCATACC 59.810 66.667 0.00 0.00 0.00 2.73
1955 2032 3.096495 ACTGCCCCCATACCGCAT 61.096 61.111 0.00 0.00 0.00 4.73
1956 2033 2.195683 CTGCCCCCATACCGCATT 59.804 61.111 0.00 0.00 0.00 3.56
1957 2034 1.349542 ACTGCCCCCATACCGCATTA 61.350 55.000 0.00 0.00 0.00 1.90
1958 2035 0.889186 CTGCCCCCATACCGCATTAC 60.889 60.000 0.00 0.00 0.00 1.89
1959 2036 1.349542 TGCCCCCATACCGCATTACT 61.350 55.000 0.00 0.00 0.00 2.24
1960 2037 0.889186 GCCCCCATACCGCATTACTG 60.889 60.000 0.00 0.00 0.00 2.74
1961 2038 0.889186 CCCCCATACCGCATTACTGC 60.889 60.000 0.00 0.00 45.31 4.40
2020 2097 8.113462 TGCCTATTTTATTTTAGGAGAAGTGGT 58.887 33.333 0.22 0.00 37.74 4.16
2043 2203 5.185249 GTGAACCTGAACACTCACCTATCTA 59.815 44.000 0.00 0.00 33.57 1.98
2044 2204 5.419155 TGAACCTGAACACTCACCTATCTAG 59.581 44.000 0.00 0.00 0.00 2.43
2045 2205 3.702045 ACCTGAACACTCACCTATCTAGC 59.298 47.826 0.00 0.00 0.00 3.42
2046 2206 3.957497 CCTGAACACTCACCTATCTAGCT 59.043 47.826 0.00 0.00 0.00 3.32
2047 2207 4.037446 CCTGAACACTCACCTATCTAGCTC 59.963 50.000 0.00 0.00 0.00 4.09
2048 2208 4.861196 TGAACACTCACCTATCTAGCTCT 58.139 43.478 0.00 0.00 0.00 4.09
2049 2209 6.002653 TGAACACTCACCTATCTAGCTCTA 57.997 41.667 0.00 0.00 0.00 2.43
2056 2216 9.325198 CACTCACCTATCTAGCTCTATAGTATG 57.675 40.741 12.07 10.31 0.00 2.39
2159 2326 8.668510 ATCCTATTTGTGATACTACAGCAAAG 57.331 34.615 0.00 0.00 33.42 2.77
2161 2329 8.318412 TCCTATTTGTGATACTACAGCAAAGAA 58.682 33.333 0.00 0.00 33.42 2.52
2176 2345 7.099120 ACAGCAAAGAAGTCAAAAGTTTTGAT 58.901 30.769 28.69 17.08 0.00 2.57
2234 2403 6.944096 ACTTATTCTTAGTTAGGTGGGTGTC 58.056 40.000 0.00 0.00 0.00 3.67
2300 2469 3.066760 CGGGGTTATTTGGATGAAAGCTC 59.933 47.826 0.00 0.00 0.00 4.09
2309 2478 2.224523 TGGATGAAAGCTCCTTCAACGT 60.225 45.455 4.99 0.00 38.75 3.99
2310 2479 2.416893 GGATGAAAGCTCCTTCAACGTC 59.583 50.000 4.99 0.00 38.75 4.34
2311 2480 2.910688 TGAAAGCTCCTTCAACGTCT 57.089 45.000 0.00 0.00 32.39 4.18
2312 2481 2.483876 TGAAAGCTCCTTCAACGTCTG 58.516 47.619 0.00 0.00 32.39 3.51
2313 2482 1.801178 GAAAGCTCCTTCAACGTCTGG 59.199 52.381 0.00 0.00 0.00 3.86
2314 2483 0.603975 AAGCTCCTTCAACGTCTGGC 60.604 55.000 0.00 0.00 0.00 4.85
2315 2484 1.301716 GCTCCTTCAACGTCTGGCA 60.302 57.895 0.00 0.00 0.00 4.92
2316 2485 0.674895 GCTCCTTCAACGTCTGGCAT 60.675 55.000 0.00 0.00 0.00 4.40
2317 2486 1.363744 CTCCTTCAACGTCTGGCATC 58.636 55.000 0.00 0.00 0.00 3.91
2318 2487 0.389817 TCCTTCAACGTCTGGCATCG 60.390 55.000 9.92 9.92 0.00 3.84
2319 2488 0.389817 CCTTCAACGTCTGGCATCGA 60.390 55.000 16.62 0.00 0.00 3.59
2320 2489 0.994995 CTTCAACGTCTGGCATCGAG 59.005 55.000 16.62 9.84 0.00 4.04
2321 2490 0.601057 TTCAACGTCTGGCATCGAGA 59.399 50.000 16.62 11.52 0.00 4.04
2322 2491 0.171231 TCAACGTCTGGCATCGAGAG 59.829 55.000 16.62 7.66 0.00 3.20
2330 2499 3.242936 GTCTGGCATCGAGAGAACTAGAC 60.243 52.174 0.00 0.00 44.83 2.59
2331 2500 6.538919 GTCTGGCATCGAGAGAACTAGACG 62.539 54.167 0.00 0.00 43.45 4.18
2336 2505 3.242549 TCGAGAGAACTAGACGTAGCA 57.757 47.619 0.00 0.00 37.03 3.49
2337 2506 3.794717 TCGAGAGAACTAGACGTAGCAT 58.205 45.455 0.00 0.00 37.03 3.79
2345 2514 4.098055 ACTAGACGTAGCATTGTCACTG 57.902 45.455 0.00 0.00 37.58 3.66
2388 2557 2.946762 GCAAGTTGTCACCGGAGC 59.053 61.111 9.46 0.00 0.00 4.70
2414 2583 8.233190 CAGGGCGAAAATGATAATTATTCTCTC 58.767 37.037 0.00 0.00 0.00 3.20
2415 2584 7.118390 AGGGCGAAAATGATAATTATTCTCTCG 59.882 37.037 0.00 6.51 0.00 4.04
2416 2585 6.738649 GGCGAAAATGATAATTATTCTCTCGC 59.261 38.462 21.81 21.81 44.32 5.03
2417 2586 6.459831 GCGAAAATGATAATTATTCTCTCGCG 59.540 38.462 18.46 0.00 37.62 5.87
2469 2638 0.331616 AAGTATGTGGGCCCCAACTC 59.668 55.000 22.27 7.32 34.18 3.01
2529 2698 9.399797 AGTAATGATAATGATGCAAGTGAGAAA 57.600 29.630 0.00 0.00 0.00 2.52
2542 2711 5.277974 GCAAGTGAGAAATTGTAACAGCTCA 60.278 40.000 0.00 0.00 0.00 4.26
2585 2754 4.158394 TCAGTCCAATTGCCAGAAAATAGC 59.842 41.667 0.00 0.00 0.00 2.97
2587 2756 2.159254 TCCAATTGCCAGAAAATAGCGC 60.159 45.455 0.00 0.00 0.00 5.92
2588 2757 2.159198 CCAATTGCCAGAAAATAGCGCT 60.159 45.455 17.26 17.26 0.00 5.92
2589 2758 3.514645 CAATTGCCAGAAAATAGCGCTT 58.485 40.909 18.68 0.00 0.00 4.68
2590 2759 2.919666 TTGCCAGAAAATAGCGCTTC 57.080 45.000 18.68 7.05 0.00 3.86
2591 2760 1.094785 TGCCAGAAAATAGCGCTTCC 58.905 50.000 18.68 0.14 0.00 3.46
2592 2761 1.340017 TGCCAGAAAATAGCGCTTCCT 60.340 47.619 18.68 2.83 0.00 3.36
2593 2762 1.064654 GCCAGAAAATAGCGCTTCCTG 59.935 52.381 18.68 15.19 0.00 3.86
2594 2763 1.064654 CCAGAAAATAGCGCTTCCTGC 59.935 52.381 18.68 2.81 38.57 4.85
2727 2896 5.152623 TCTGAATCTAACCACACCAGAAG 57.847 43.478 0.00 0.00 0.00 2.85
2782 2957 1.985159 AGCAACATGGTCCAACTAGGA 59.015 47.619 0.00 0.00 46.75 2.94
2857 3035 9.450807 CTGAACTAAACATCAAAACTTTACCAG 57.549 33.333 0.00 0.00 0.00 4.00
2911 3089 1.537397 TCCTCTTCTGCACAGGCCT 60.537 57.895 0.00 0.00 40.13 5.19
2990 3168 6.653020 ACATCCACATGAGCTCATTTACTTA 58.347 36.000 26.70 10.58 33.61 2.24
2992 3170 6.299805 TCCACATGAGCTCATTTACTTAGT 57.700 37.500 26.70 16.12 33.61 2.24
3092 3270 4.526262 CGGACCTATGGATCTGAAGAGATT 59.474 45.833 0.00 0.00 39.19 2.40
3141 3321 7.993418 CTTCTCAAAGAGAGGGATCTTCCCAA 61.993 46.154 14.84 0.00 46.40 4.12
3232 3412 6.050432 TGCAAATTGCTCTTCTTTTGAACAT 58.950 32.000 19.34 0.00 45.31 2.71
3246 3426 6.476380 TCTTTTGAACATTCAGATTGTTGCAC 59.524 34.615 14.13 2.86 37.43 4.57
3314 3495 3.068873 TCGTTTTGGGGGAAAATGTGAAG 59.931 43.478 0.00 0.00 40.25 3.02
3328 3509 7.336931 GGAAAATGTGAAGCCTATTTCAGTAGA 59.663 37.037 0.00 0.00 37.72 2.59
3390 3571 6.040616 TCAGACCTTCTCGTCTCTTTTTAGTT 59.959 38.462 0.00 0.00 41.23 2.24
3396 3577 5.784177 TCTCGTCTCTTTTTAGTTGCAGAT 58.216 37.500 0.00 0.00 0.00 2.90
3399 3580 5.179368 TCGTCTCTTTTTAGTTGCAGATTGG 59.821 40.000 0.00 0.00 0.00 3.16
3460 3641 3.261897 AGTGGGATGTGGTAGAAAGACTG 59.738 47.826 0.00 0.00 0.00 3.51
3513 3694 1.051556 GGGTGGCCTCCCAAACAAAA 61.052 55.000 33.75 0.00 44.33 2.44
3537 3718 5.539193 AGTCTGTTAGTGTAGTAAGCAGGTT 59.461 40.000 0.00 0.00 0.00 3.50
3562 3743 4.055360 CCTCACGTTAACAGTGACATTCA 58.945 43.478 21.33 7.66 42.91 2.57
3602 3783 6.653526 TTGGATTTGTATAATGCCATCCAG 57.346 37.500 4.23 0.00 40.92 3.86
3652 3833 4.736126 AGCAACAAAACTAAACCTTGCT 57.264 36.364 0.00 0.00 39.54 3.91
3763 3946 5.836898 TCCCACTTACAAGACTTCTGAGTTA 59.163 40.000 0.00 0.00 35.88 2.24
3849 4032 3.829026 TGCTGCTAGAACAGGATATCGAT 59.171 43.478 2.16 2.16 38.16 3.59
3929 4112 2.887152 GGTGGAGCTTGAATGTGAAAGT 59.113 45.455 0.00 0.00 0.00 2.66
4052 4235 3.379372 AGCAGTGTGAATATGTTGCCATC 59.621 43.478 0.00 0.00 32.29 3.51
4292 4493 3.551890 GTCCTATATGTGTGCACTTGTCG 59.448 47.826 19.41 0.58 0.00 4.35
4330 4531 9.466497 AATATTTTATCACATCACCAGTTCACT 57.534 29.630 0.00 0.00 0.00 3.41
4347 4631 7.202001 CCAGTTCACTACATAGGAATGGTATGA 60.202 40.741 0.00 0.00 37.43 2.15
4416 4700 2.231721 ACTAAGGCGAGAAAGTCAGGAC 59.768 50.000 0.00 0.00 0.00 3.85
4482 4767 7.974243 TTGCATTTCATGAACATCTAAATCG 57.026 32.000 7.89 0.00 0.00 3.34
4487 4772 8.791605 CATTTCATGAACATCTAAATCGTGTTG 58.208 33.333 7.89 0.00 36.30 3.33
4488 4773 7.433708 TTCATGAACATCTAAATCGTGTTGT 57.566 32.000 3.38 0.00 36.30 3.32
4507 4792 4.322080 TGTGCTTATCCTGTCTTATCGG 57.678 45.455 0.00 0.00 0.00 4.18
4557 4842 2.962859 ACAGTTCCCAGAAATTTGGCT 58.037 42.857 0.00 0.00 36.88 4.75
4588 4873 3.055819 AGTGCTAATGTACCACTCCACAG 60.056 47.826 0.00 0.00 34.99 3.66
4807 5092 7.836842 ACGGATTCTAAGCCACAAAATAAAAT 58.163 30.769 0.00 0.00 32.95 1.82
4864 5151 7.654022 TGGTTGTCTTAAGGAATTTCTGTTT 57.346 32.000 1.85 0.00 0.00 2.83
4897 5184 1.079127 GCTGGAGTGTGGCGTACAT 60.079 57.895 0.00 0.00 42.24 2.29
4974 5261 2.743928 GCAGTCCGAGCAACCCTG 60.744 66.667 0.00 0.00 0.00 4.45
5203 5490 6.546395 AGTAGCAAAAGATATTTTGACTGCG 58.454 36.000 25.61 2.36 42.79 5.18
5240 5530 2.178912 CCTCGTTGGGCTCTAAAACA 57.821 50.000 0.00 0.00 0.00 2.83
5514 5808 4.036144 AGTTTCTCAAGAAGTGCTTTCAGC 59.964 41.667 4.71 0.00 38.31 4.26
5550 5847 1.751924 GTCTCCGCTTCTCCACATACT 59.248 52.381 0.00 0.00 0.00 2.12
5561 5859 7.955864 CGCTTCTCCACATACTAAAAACTTAAC 59.044 37.037 0.00 0.00 0.00 2.01
5730 6028 9.196552 GAAAACAGGGAACAATTTTGAAGATAG 57.803 33.333 0.00 0.00 31.97 2.08
5798 6099 6.710744 CAGGTAAACCAACATCTTAGTCAAGT 59.289 38.462 1.26 0.00 38.89 3.16
5799 6100 6.935208 AGGTAAACCAACATCTTAGTCAAGTC 59.065 38.462 1.26 0.00 38.89 3.01
5819 6120 6.931790 AGTCTATGAGCATTCAGACCATAT 57.068 37.500 8.89 0.00 36.61 1.78
5846 6157 6.511416 GCTAGACTGTAACTGACATCATCAT 58.489 40.000 0.00 0.00 37.45 2.45
5927 6238 4.390603 GTGCATCGTACAACCTTGTATTCA 59.609 41.667 1.32 0.00 44.59 2.57
6162 6475 7.126421 ACAGTTTCCATATCATACTCTGGTCTT 59.874 37.037 0.00 0.00 0.00 3.01
6266 6579 7.174946 ACTCTACAGGAAATGTAATGTGTTTGG 59.825 37.037 0.00 0.00 43.78 3.28
6273 6586 7.656948 AGGAAATGTAATGTGTTTGGATTTGTG 59.343 33.333 0.00 0.00 0.00 3.33
6274 6587 7.440856 GGAAATGTAATGTGTTTGGATTTGTGT 59.559 33.333 0.00 0.00 0.00 3.72
6275 6588 7.712264 AATGTAATGTGTTTGGATTTGTGTG 57.288 32.000 0.00 0.00 0.00 3.82
6276 6589 6.214191 TGTAATGTGTTTGGATTTGTGTGT 57.786 33.333 0.00 0.00 0.00 3.72
6277 6590 6.038985 TGTAATGTGTTTGGATTTGTGTGTG 58.961 36.000 0.00 0.00 0.00 3.82
6312 6625 2.618709 AGCGCTAACAAGCAAAAGAAGT 59.381 40.909 8.99 0.00 35.48 3.01
6313 6626 3.813166 AGCGCTAACAAGCAAAAGAAGTA 59.187 39.130 8.99 0.00 35.48 2.24
6314 6627 3.906601 GCGCTAACAAGCAAAAGAAGTAC 59.093 43.478 0.00 0.00 34.41 2.73
6315 6628 4.464112 CGCTAACAAGCAAAAGAAGTACC 58.536 43.478 0.00 0.00 34.41 3.34
6316 6629 4.213482 CGCTAACAAGCAAAAGAAGTACCT 59.787 41.667 0.00 0.00 34.41 3.08
6317 6630 5.452777 GCTAACAAGCAAAAGAAGTACCTG 58.547 41.667 0.00 0.00 34.41 4.00
6318 6631 5.008712 GCTAACAAGCAAAAGAAGTACCTGT 59.991 40.000 0.00 0.00 34.41 4.00
6354 6667 2.409870 GCAGCTGCGCTATTTGGGT 61.410 57.895 25.23 0.00 36.40 4.51
6357 6670 0.609131 AGCTGCGCTATTTGGGTGTT 60.609 50.000 9.73 0.00 36.99 3.32
6376 6689 2.528743 GCGAGCGCATGCAGTACAT 61.529 57.895 19.57 0.00 46.23 2.29
6411 6724 9.503369 ACTCACCCTATAAAAATAGTACTTCCT 57.497 33.333 0.00 0.00 0.00 3.36
6412 6725 9.984190 CTCACCCTATAAAAATAGTACTTCCTC 57.016 37.037 0.00 0.00 0.00 3.71
6413 6726 8.931568 TCACCCTATAAAAATAGTACTTCCTCC 58.068 37.037 0.00 0.00 0.00 4.30
6414 6727 7.871463 CACCCTATAAAAATAGTACTTCCTCCG 59.129 40.741 0.00 0.00 0.00 4.63
6415 6728 7.566509 ACCCTATAAAAATAGTACTTCCTCCGT 59.433 37.037 0.00 0.00 0.00 4.69
6416 6729 8.427276 CCCTATAAAAATAGTACTTCCTCCGTT 58.573 37.037 0.00 0.00 0.00 4.44
6417 6730 9.473640 CCTATAAAAATAGTACTTCCTCCGTTC 57.526 37.037 0.00 0.00 0.00 3.95
6418 6731 9.473640 CTATAAAAATAGTACTTCCTCCGTTCC 57.526 37.037 0.00 0.00 0.00 3.62
6419 6732 6.370186 AAAAATAGTACTTCCTCCGTTCCT 57.630 37.500 0.00 0.00 0.00 3.36
6420 6733 7.486407 AAAAATAGTACTTCCTCCGTTCCTA 57.514 36.000 0.00 0.00 0.00 2.94
6421 6734 7.486407 AAAATAGTACTTCCTCCGTTCCTAA 57.514 36.000 0.00 0.00 0.00 2.69
6422 6735 7.486407 AAATAGTACTTCCTCCGTTCCTAAA 57.514 36.000 0.00 0.00 0.00 1.85
6423 6736 7.672122 AATAGTACTTCCTCCGTTCCTAAAT 57.328 36.000 0.00 0.00 0.00 1.40
6424 6737 8.773033 AATAGTACTTCCTCCGTTCCTAAATA 57.227 34.615 0.00 0.00 0.00 1.40
6425 6738 8.953223 ATAGTACTTCCTCCGTTCCTAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
6426 6739 7.672122 AGTACTTCCTCCGTTCCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
6427 6740 8.087303 AGTACTTCCTCCGTTCCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
6428 6741 7.985752 AGTACTTCCTCCGTTCCTAAATATTTG 59.014 37.037 11.05 1.40 0.00 2.32
6429 6742 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
6430 6743 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
6431 6744 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
6432 6745 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
6433 6746 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
6434 6747 7.551617 TCCTCCGTTCCTAAATATTTGTCTTTC 59.448 37.037 11.05 0.00 0.00 2.62
6435 6748 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
6436 6749 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
6437 6750 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
6438 6751 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
6451 6764 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
6452 6765 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
6453 6766 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
6454 6767 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
6455 6768 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
6456 6769 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
6462 6775 9.737427 AGAGATTTCAACAAGTGACTATATACG 57.263 33.333 0.00 0.00 35.39 3.06
6463 6776 8.873215 AGATTTCAACAAGTGACTATATACGG 57.127 34.615 0.00 0.00 35.39 4.02
6464 6777 8.692710 AGATTTCAACAAGTGACTATATACGGA 58.307 33.333 0.00 0.00 35.39 4.69
6465 6778 8.873215 ATTTCAACAAGTGACTATATACGGAG 57.127 34.615 0.00 0.00 35.39 4.63
6466 6779 5.828747 TCAACAAGTGACTATATACGGAGC 58.171 41.667 0.00 0.00 0.00 4.70
6467 6780 5.358725 TCAACAAGTGACTATATACGGAGCA 59.641 40.000 0.00 0.00 0.00 4.26
6468 6781 5.847111 ACAAGTGACTATATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
6469 6782 6.216801 ACAAGTGACTATATACGGAGCAAA 57.783 37.500 0.00 0.00 0.00 3.68
6470 6783 6.636705 ACAAGTGACTATATACGGAGCAAAA 58.363 36.000 0.00 0.00 0.00 2.44
6471 6784 7.272978 ACAAGTGACTATATACGGAGCAAAAT 58.727 34.615 0.00 0.00 0.00 1.82
6472 6785 7.224753 ACAAGTGACTATATACGGAGCAAAATG 59.775 37.037 0.00 0.00 0.00 2.32
6473 6786 7.050970 AGTGACTATATACGGAGCAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
6474 6787 7.148641 AGTGACTATATACGGAGCAAAATGAG 58.851 38.462 0.00 0.00 0.00 2.90
6475 6788 6.924060 GTGACTATATACGGAGCAAAATGAGT 59.076 38.462 0.00 0.00 0.00 3.41
6476 6789 6.923508 TGACTATATACGGAGCAAAATGAGTG 59.076 38.462 0.00 0.00 0.00 3.51
6477 6790 7.050970 ACTATATACGGAGCAAAATGAGTGA 57.949 36.000 0.00 0.00 0.00 3.41
6478 6791 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
6479 6792 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
6480 6793 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
6481 6794 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
6482 6795 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
6483 6796 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
6484 6797 4.259970 CGGAGCAAAATGAGTGAATCTACG 60.260 45.833 0.00 0.00 0.00 3.51
6485 6798 4.494855 GGAGCAAAATGAGTGAATCTACGC 60.495 45.833 0.00 0.00 0.00 4.42
6486 6799 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
6487 6800 4.697352 AGCAAAATGAGTGAATCTACGCTT 59.303 37.500 0.00 0.00 0.00 4.68
6488 6801 5.182001 AGCAAAATGAGTGAATCTACGCTTT 59.818 36.000 0.00 0.00 0.00 3.51
6489 6802 6.371548 AGCAAAATGAGTGAATCTACGCTTTA 59.628 34.615 0.00 0.00 0.00 1.85
6490 6803 7.021196 GCAAAATGAGTGAATCTACGCTTTAA 58.979 34.615 0.00 0.00 0.00 1.52
6491 6804 7.537306 GCAAAATGAGTGAATCTACGCTTTAAA 59.463 33.333 0.00 0.00 0.00 1.52
6492 6805 9.393249 CAAAATGAGTGAATCTACGCTTTAAAA 57.607 29.630 0.00 0.00 0.00 1.52
6497 6810 9.378551 TGAGTGAATCTACGCTTTAAAATATGT 57.621 29.630 0.00 0.00 0.00 2.29
6498 6811 9.851043 GAGTGAATCTACGCTTTAAAATATGTC 57.149 33.333 0.00 0.00 0.00 3.06
6499 6812 9.601217 AGTGAATCTACGCTTTAAAATATGTCT 57.399 29.630 0.00 0.00 0.00 3.41
6521 6834 9.387257 TGTCTATATACATTCGTCGTATATGGT 57.613 33.333 16.99 0.00 40.84 3.55
6526 6839 5.368256 ACATTCGTCGTATATGGTAGTCC 57.632 43.478 0.00 0.00 0.00 3.85
6527 6840 7.823799 TATACATTCGTCGTATATGGTAGTCCA 59.176 37.037 0.00 0.00 38.09 4.02
6542 6855 7.733773 TGGTAGTCCATTTGAAATCTCTAGA 57.266 36.000 0.00 0.00 39.03 2.43
6543 6856 8.146053 TGGTAGTCCATTTGAAATCTCTAGAA 57.854 34.615 0.00 0.00 39.03 2.10
6544 6857 8.602424 TGGTAGTCCATTTGAAATCTCTAGAAA 58.398 33.333 0.00 0.00 39.03 2.52
6545 6858 9.103861 GGTAGTCCATTTGAAATCTCTAGAAAG 57.896 37.037 0.00 0.00 0.00 2.62
6546 6859 9.877178 GTAGTCCATTTGAAATCTCTAGAAAGA 57.123 33.333 0.00 0.00 0.00 2.52
6547 6860 8.785329 AGTCCATTTGAAATCTCTAGAAAGAC 57.215 34.615 0.00 0.00 0.00 3.01
6548 6861 8.378565 AGTCCATTTGAAATCTCTAGAAAGACA 58.621 33.333 0.00 0.00 0.00 3.41
6549 6862 9.003658 GTCCATTTGAAATCTCTAGAAAGACAA 57.996 33.333 0.00 0.00 0.00 3.18
6550 6863 9.573166 TCCATTTGAAATCTCTAGAAAGACAAA 57.427 29.630 0.00 4.41 0.00 2.83
6563 6876 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
6564 6877 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
6565 6878 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
6566 6879 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
6567 6880 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6676 6989 7.667219 ACAAATCAGTCAAGAAAGGACATGTAT 59.333 33.333 0.00 0.00 37.74 2.29
6735 7049 9.643693 AAGCCATAACTTTTTGATTCAAGTATG 57.356 29.630 0.00 4.81 32.74 2.39
6748 7062 8.827832 TGATTCAAGTATGGGAATTCAGATTT 57.172 30.769 7.93 0.00 34.06 2.17
6750 7064 6.455360 TCAAGTATGGGAATTCAGATTTGC 57.545 37.500 7.93 0.00 29.59 3.68
6915 7230 9.625747 TTTGTCTATTATGATTGCCTATCAACA 57.374 29.630 3.10 0.38 45.99 3.33
7025 7668 5.642063 ACAGTTGTCTAAAACCATGTATCCG 59.358 40.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.227674 GAAAGATCTGCCGGCCGAT 60.228 57.895 30.55 30.55 0.00 4.18
41 42 5.048507 GCGACGGGTATTTTAGAAAGATCT 58.951 41.667 0.00 0.00 39.82 2.75
175 201 2.949644 AGGTTTCTCCCGTGTTTCAAAG 59.050 45.455 0.00 0.00 36.75 2.77
180 206 3.358118 TGAAAAGGTTTCTCCCGTGTTT 58.642 40.909 2.68 0.00 36.75 2.83
542 572 7.930325 TCTGAAACATCATTGGTATTGCAAAAA 59.070 29.630 1.71 0.00 0.00 1.94
583 618 2.884639 TCTTTACTTGCCTGTTTCTGCC 59.115 45.455 0.00 0.00 0.00 4.85
592 627 2.143925 GACGCTTGTCTTTACTTGCCT 58.856 47.619 0.00 0.00 39.61 4.75
599 634 3.428452 CCTCCATACGACGCTTGTCTTTA 60.428 47.826 0.00 0.00 40.61 1.85
612 647 2.028190 CGCTGCCTCCTCCATACG 59.972 66.667 0.00 0.00 0.00 3.06
613 648 2.134287 TCCGCTGCCTCCTCCATAC 61.134 63.158 0.00 0.00 0.00 2.39
614 649 2.134287 GTCCGCTGCCTCCTCCATA 61.134 63.158 0.00 0.00 0.00 2.74
615 650 3.474570 GTCCGCTGCCTCCTCCAT 61.475 66.667 0.00 0.00 0.00 3.41
618 653 3.492311 GATCGTCCGCTGCCTCCTC 62.492 68.421 0.00 0.00 0.00 3.71
619 654 3.532155 GATCGTCCGCTGCCTCCT 61.532 66.667 0.00 0.00 0.00 3.69
620 655 4.933064 CGATCGTCCGCTGCCTCC 62.933 72.222 7.03 0.00 0.00 4.30
638 673 0.955428 GTTTCAGCTGGCGGATCACA 60.955 55.000 15.13 0.00 0.00 3.58
714 751 4.968259 AGCATTTGGGTCGTGCTAATATA 58.032 39.130 0.00 0.00 46.54 0.86
745 782 3.942748 ACGAACTTGCCACTAAACTTTGA 59.057 39.130 0.00 0.00 0.00 2.69
750 787 1.334689 GCCACGAACTTGCCACTAAAC 60.335 52.381 0.00 0.00 0.00 2.01
801 838 4.102681 ACTCCCCCAACTATTAAATCGGAG 59.897 45.833 0.00 0.00 40.19 4.63
988 1041 4.227134 CTCCATGGGCGACGGAGG 62.227 72.222 13.02 0.00 42.27 4.30
989 1042 4.227134 CCTCCATGGGCGACGGAG 62.227 72.222 13.02 4.50 45.02 4.63
1059 1127 2.722201 GGTGGAGACGGCGGAGAAT 61.722 63.158 13.24 0.00 0.00 2.40
1271 1339 1.337118 GAGGAGGAGCCATCGAAGAT 58.663 55.000 0.00 0.00 45.12 2.40
1405 1473 1.371337 CCACCAGCATCACCGACATG 61.371 60.000 0.00 0.00 0.00 3.21
1630 1705 5.660460 AGAATTTGTTTTGGTGTTCTGGAC 58.340 37.500 0.00 0.00 0.00 4.02
1719 1794 5.320723 CACGAAATAAATTAGCAAGACGCA 58.679 37.500 0.00 0.00 46.13 5.24
1937 2014 2.624674 AATGCGGTATGGGGGCAGTC 62.625 60.000 0.00 0.00 40.44 3.51
1951 2028 7.172654 TGTAATGTACTAATGCAGTAATGCG 57.827 36.000 10.97 0.00 41.45 4.73
1955 2032 8.888716 CATGGTTGTAATGTACTAATGCAGTAA 58.111 33.333 0.00 0.00 41.45 2.24
1956 2033 8.044309 ACATGGTTGTAATGTACTAATGCAGTA 58.956 33.333 0.00 0.00 36.50 2.74
1957 2034 6.884295 ACATGGTTGTAATGTACTAATGCAGT 59.116 34.615 0.00 0.00 36.50 4.40
1958 2035 7.280876 AGACATGGTTGTAATGTACTAATGCAG 59.719 37.037 0.00 0.00 38.37 4.41
1959 2036 7.065683 CAGACATGGTTGTAATGTACTAATGCA 59.934 37.037 0.00 0.00 38.37 3.96
1960 2037 7.065803 ACAGACATGGTTGTAATGTACTAATGC 59.934 37.037 0.00 0.00 38.37 3.56
1961 2038 8.492673 ACAGACATGGTTGTAATGTACTAATG 57.507 34.615 0.00 0.00 38.37 1.90
1962 2039 8.946085 CAACAGACATGGTTGTAATGTACTAAT 58.054 33.333 0.00 0.00 40.48 1.73
1975 2052 2.481795 GCAAGTTGCAACAGACATGGTT 60.482 45.455 30.11 11.13 44.26 3.67
2020 2097 4.160329 AGATAGGTGAGTGTTCAGGTTCA 58.840 43.478 0.00 0.00 32.98 3.18
2043 2203 4.604050 TGAGGAGGACCATACTATAGAGCT 59.396 45.833 6.78 0.00 38.94 4.09
2044 2204 4.924625 TGAGGAGGACCATACTATAGAGC 58.075 47.826 6.78 0.00 38.94 4.09
2045 2205 9.535170 TTATTTGAGGAGGACCATACTATAGAG 57.465 37.037 6.78 0.00 38.94 2.43
2046 2206 9.535170 CTTATTTGAGGAGGACCATACTATAGA 57.465 37.037 6.78 0.00 38.94 1.98
2047 2207 9.315363 ACTTATTTGAGGAGGACCATACTATAG 57.685 37.037 0.00 0.00 38.94 1.31
2048 2208 9.090103 CACTTATTTGAGGAGGACCATACTATA 57.910 37.037 0.00 0.00 38.94 1.31
2049 2209 7.789831 TCACTTATTTGAGGAGGACCATACTAT 59.210 37.037 0.00 0.00 38.94 2.12
2056 2216 4.468153 AGTCTCACTTATTTGAGGAGGACC 59.532 45.833 0.46 0.00 42.95 4.46
2128 2295 9.303116 CTGTAGTATCACAAATAGGATAGGTCT 57.697 37.037 0.00 0.00 0.00 3.85
2134 2301 8.486210 TCTTTGCTGTAGTATCACAAATAGGAT 58.514 33.333 0.00 0.00 30.52 3.24
2135 2302 7.847096 TCTTTGCTGTAGTATCACAAATAGGA 58.153 34.615 0.00 0.00 30.52 2.94
2136 2303 8.492673 TTCTTTGCTGTAGTATCACAAATAGG 57.507 34.615 0.00 0.00 30.52 2.57
2137 2304 9.155975 ACTTCTTTGCTGTAGTATCACAAATAG 57.844 33.333 0.00 0.00 30.52 1.73
2138 2305 9.151471 GACTTCTTTGCTGTAGTATCACAAATA 57.849 33.333 0.00 0.00 30.52 1.40
2141 2308 6.521162 TGACTTCTTTGCTGTAGTATCACAA 58.479 36.000 0.00 0.00 0.00 3.33
2159 2326 7.703328 TGTCTGGTATCAAAACTTTTGACTTC 58.297 34.615 17.33 11.10 0.00 3.01
2161 2329 7.556275 TCTTGTCTGGTATCAAAACTTTTGACT 59.444 33.333 17.33 10.35 0.00 3.41
2198 2367 6.889198 ACTAAGAATAAGTTGCATGCTCCTA 58.111 36.000 20.33 6.73 0.00 2.94
2300 2469 0.389817 TCGATGCCAGACGTTGAAGG 60.390 55.000 0.00 0.00 0.00 3.46
2309 2478 2.946329 GTCTAGTTCTCTCGATGCCAGA 59.054 50.000 0.00 0.00 0.00 3.86
2310 2479 2.286713 CGTCTAGTTCTCTCGATGCCAG 60.287 54.545 0.00 0.00 0.00 4.85
2311 2480 1.671328 CGTCTAGTTCTCTCGATGCCA 59.329 52.381 0.00 0.00 0.00 4.92
2312 2481 1.671845 ACGTCTAGTTCTCTCGATGCC 59.328 52.381 0.00 0.00 0.00 4.40
2313 2482 3.605231 GCTACGTCTAGTTCTCTCGATGC 60.605 52.174 0.00 0.00 0.00 3.91
2314 2483 3.556365 TGCTACGTCTAGTTCTCTCGATG 59.444 47.826 0.00 0.00 0.00 3.84
2315 2484 3.794717 TGCTACGTCTAGTTCTCTCGAT 58.205 45.455 0.00 0.00 0.00 3.59
2316 2485 3.242549 TGCTACGTCTAGTTCTCTCGA 57.757 47.619 0.00 0.00 0.00 4.04
2317 2486 4.201832 ACAATGCTACGTCTAGTTCTCTCG 60.202 45.833 0.00 0.00 0.00 4.04
2318 2487 5.163744 TGACAATGCTACGTCTAGTTCTCTC 60.164 44.000 0.00 0.00 33.18 3.20
2319 2488 4.700692 TGACAATGCTACGTCTAGTTCTCT 59.299 41.667 0.00 0.00 33.18 3.10
2320 2489 4.794246 GTGACAATGCTACGTCTAGTTCTC 59.206 45.833 0.00 0.00 33.18 2.87
2321 2490 4.459685 AGTGACAATGCTACGTCTAGTTCT 59.540 41.667 0.00 0.00 33.18 3.01
2322 2491 4.559251 CAGTGACAATGCTACGTCTAGTTC 59.441 45.833 0.00 0.00 33.18 3.01
2323 2492 4.486090 CAGTGACAATGCTACGTCTAGTT 58.514 43.478 0.00 0.00 33.18 2.24
2324 2493 3.119459 CCAGTGACAATGCTACGTCTAGT 60.119 47.826 0.00 0.00 33.18 2.57
2325 2494 3.439293 CCAGTGACAATGCTACGTCTAG 58.561 50.000 0.00 0.00 33.18 2.43
2326 2495 2.165641 CCCAGTGACAATGCTACGTCTA 59.834 50.000 0.00 0.00 33.18 2.59
2327 2496 1.066858 CCCAGTGACAATGCTACGTCT 60.067 52.381 0.00 0.00 33.18 4.18
2328 2497 1.337823 ACCCAGTGACAATGCTACGTC 60.338 52.381 0.00 0.00 0.00 4.34
2329 2498 0.685097 ACCCAGTGACAATGCTACGT 59.315 50.000 0.00 0.00 0.00 3.57
2330 2499 1.808411 AACCCAGTGACAATGCTACG 58.192 50.000 0.00 0.00 0.00 3.51
2331 2500 2.488153 GGAAACCCAGTGACAATGCTAC 59.512 50.000 0.00 0.00 0.00 3.58
2332 2501 2.375174 AGGAAACCCAGTGACAATGCTA 59.625 45.455 0.00 0.00 0.00 3.49
2333 2502 1.145738 AGGAAACCCAGTGACAATGCT 59.854 47.619 0.00 0.00 0.00 3.79
2334 2503 1.620822 AGGAAACCCAGTGACAATGC 58.379 50.000 0.00 0.00 0.00 3.56
2335 2504 3.636300 TGAAAGGAAACCCAGTGACAATG 59.364 43.478 0.00 0.00 0.00 2.82
2336 2505 3.636764 GTGAAAGGAAACCCAGTGACAAT 59.363 43.478 0.00 0.00 0.00 2.71
2337 2506 3.020984 GTGAAAGGAAACCCAGTGACAA 58.979 45.455 0.00 0.00 0.00 3.18
2345 2514 3.208747 TCTGACAGTGAAAGGAAACCC 57.791 47.619 1.59 0.00 0.00 4.11
2383 2552 1.097547 ATCATTTTCGCCCTGCTCCG 61.098 55.000 0.00 0.00 0.00 4.63
2388 2557 8.103948 AGAGAATAATTATCATTTTCGCCCTG 57.896 34.615 0.00 0.00 0.00 4.45
2414 2583 2.892425 GCCCAGAATCCAGACGCG 60.892 66.667 3.53 3.53 0.00 6.01
2415 2584 2.514824 GGCCCAGAATCCAGACGC 60.515 66.667 0.00 0.00 0.00 5.19
2416 2585 2.190578 GGGCCCAGAATCCAGACG 59.809 66.667 19.95 0.00 0.00 4.18
2417 2586 1.225704 CAGGGCCCAGAATCCAGAC 59.774 63.158 27.56 0.00 0.00 3.51
2469 2638 2.822643 TAGGTCCCCAGCACCCAGAG 62.823 65.000 0.00 0.00 33.96 3.35
2529 2698 3.016736 CCGGGAAATGAGCTGTTACAAT 58.983 45.455 0.00 0.00 0.00 2.71
2535 2704 1.002134 CCACCGGGAAATGAGCTGT 60.002 57.895 6.32 0.00 35.59 4.40
2587 2756 4.463891 ACTGAAACATAAATGGGCAGGAAG 59.536 41.667 0.00 0.00 32.43 3.46
2588 2757 4.415596 ACTGAAACATAAATGGGCAGGAA 58.584 39.130 0.00 0.00 32.43 3.36
2589 2758 4.046286 ACTGAAACATAAATGGGCAGGA 57.954 40.909 0.00 0.00 32.43 3.86
2590 2759 4.497300 CAACTGAAACATAAATGGGCAGG 58.503 43.478 0.00 0.00 32.43 4.85
2591 2760 3.928375 GCAACTGAAACATAAATGGGCAG 59.072 43.478 0.00 0.00 33.53 4.85
2592 2761 3.577848 AGCAACTGAAACATAAATGGGCA 59.422 39.130 0.00 0.00 0.00 5.36
2593 2762 4.176271 GAGCAACTGAAACATAAATGGGC 58.824 43.478 0.00 0.00 0.00 5.36
2594 2763 4.220382 TGGAGCAACTGAAACATAAATGGG 59.780 41.667 0.00 0.00 0.00 4.00
2727 2896 0.034186 TGTCCAATGGTCTCCATGGC 60.034 55.000 6.96 0.00 44.40 4.40
2782 2957 3.782656 AGTACCATTCTTCCAAACGGT 57.217 42.857 0.00 0.00 0.00 4.83
2857 3035 7.787725 TTTTGAACTGAAGAGGAGTAACTTC 57.212 36.000 0.00 0.00 41.67 3.01
2886 3064 3.007398 CCTGTGCAGAAGAGGAGTAACTT 59.993 47.826 0.02 0.00 42.17 2.66
2889 3067 1.276421 GCCTGTGCAGAAGAGGAGTAA 59.724 52.381 0.00 0.00 42.17 2.24
2894 3072 1.376942 CAGGCCTGTGCAGAAGAGG 60.377 63.158 25.53 0.00 42.49 3.69
2911 3089 8.044908 GGTAATCAGTATCAGGGTTAAACTTCA 58.955 37.037 0.00 0.00 0.00 3.02
2990 3168 4.631234 TGGTGTAGGGAAATATCAGGACT 58.369 43.478 0.00 0.00 0.00 3.85
2992 3170 3.973973 CCTGGTGTAGGGAAATATCAGGA 59.026 47.826 0.00 0.00 43.33 3.86
3092 3270 6.610830 AGAATATGCCCACCAATTATTGAACA 59.389 34.615 6.50 0.00 0.00 3.18
3314 3495 8.458843 TGCATAAACTTTTCTACTGAAATAGGC 58.541 33.333 0.00 0.00 41.24 3.93
3328 3509 7.424803 TGCATCGCTATATTGCATAAACTTTT 58.575 30.769 9.78 0.00 41.18 2.27
3390 3571 0.250684 TTCAGTTCGGCCAATCTGCA 60.251 50.000 2.24 0.00 0.00 4.41
3396 3577 5.763204 GGAATATAATCTTCAGTTCGGCCAA 59.237 40.000 2.24 0.00 0.00 4.52
3399 3580 6.861065 TTGGAATATAATCTTCAGTTCGGC 57.139 37.500 0.00 0.00 0.00 5.54
3460 3641 0.098728 GGTACATGTGCACGCCAATC 59.901 55.000 16.11 0.94 0.00 2.67
3513 3694 5.078256 ACCTGCTTACTACACTAACAGACT 58.922 41.667 0.00 0.00 0.00 3.24
3537 3718 2.427812 TGTCACTGTTAACGTGAGGTCA 59.572 45.455 23.96 18.25 41.62 4.02
3602 3783 6.808212 CCATCACAAATGGTCTTTATTGTCAC 59.192 38.462 0.00 0.00 33.97 3.67
3763 3946 1.771255 ACAGAGGAACTTGAGCTTGGT 59.229 47.619 0.00 0.00 41.55 3.67
3929 4112 2.852075 AGACCCTTGACCGCCCAA 60.852 61.111 0.00 0.00 0.00 4.12
4195 4379 3.701542 TGTGATAGACCTGTAGCTGGAAG 59.298 47.826 0.00 0.00 0.00 3.46
4281 4473 4.600012 AAAGCATATACGACAAGTGCAC 57.400 40.909 9.40 9.40 38.23 4.57
4347 4631 1.210478 CGAATGAGGTCAGGGAATGGT 59.790 52.381 0.00 0.00 0.00 3.55
4482 4767 5.005779 CGATAAGACAGGATAAGCACAACAC 59.994 44.000 0.00 0.00 0.00 3.32
4487 4772 4.202121 TGACCGATAAGACAGGATAAGCAC 60.202 45.833 0.00 0.00 0.00 4.40
4488 4773 3.958147 TGACCGATAAGACAGGATAAGCA 59.042 43.478 0.00 0.00 0.00 3.91
4507 4792 1.317613 TGTTTCTGGCACCACATGAC 58.682 50.000 0.00 0.00 36.53 3.06
4557 4842 6.825944 TGGTACATTAGCACTATTTTGCAA 57.174 33.333 0.00 0.00 45.62 4.08
4588 4873 5.909610 GGAGCAAATAAAACGCTATCATGTC 59.090 40.000 0.00 0.00 35.75 3.06
4864 5151 1.143277 TCCAGCGGTTCCTTGGTTTAA 59.857 47.619 8.39 0.00 33.65 1.52
4974 5261 7.193595 CGACATATACAAATTTCCAACCCTTC 58.806 38.462 0.00 0.00 0.00 3.46
5057 5344 5.827666 TGCATAGTCAATTGATTGCATCAG 58.172 37.500 26.51 10.20 40.94 2.90
5514 5808 5.812642 AGCGGAGACAGTAATCAAATTGTAG 59.187 40.000 0.00 0.00 0.00 2.74
5550 5847 9.949174 GATGGTTTTAAGGACGTTAAGTTTTTA 57.051 29.630 0.00 0.00 32.07 1.52
5561 5859 3.334691 TGCAGAGATGGTTTTAAGGACG 58.665 45.455 0.00 0.00 0.00 4.79
5798 6099 5.485620 GCATATGGTCTGAATGCTCATAGA 58.514 41.667 4.56 0.00 42.15 1.98
5799 6100 4.329256 CGCATATGGTCTGAATGCTCATAG 59.671 45.833 4.56 0.00 43.01 2.23
5819 6120 1.883926 TGTCAGTTACAGTCTAGCGCA 59.116 47.619 11.47 0.00 33.01 6.09
5927 6238 5.941555 AAATAGTAGCTAGTCTTGCCAGT 57.058 39.130 3.81 0.00 0.00 4.00
6162 6475 2.037902 TGTACGAGAAAGCATCACCCAA 59.962 45.455 0.00 0.00 0.00 4.12
6266 6579 3.126858 ACAGACACACACACACACAAATC 59.873 43.478 0.00 0.00 0.00 2.17
6273 6586 1.290203 CTCCACAGACACACACACAC 58.710 55.000 0.00 0.00 0.00 3.82
6274 6587 0.461870 GCTCCACAGACACACACACA 60.462 55.000 0.00 0.00 0.00 3.72
6275 6588 1.490693 CGCTCCACAGACACACACAC 61.491 60.000 0.00 0.00 0.00 3.82
6276 6589 1.227234 CGCTCCACAGACACACACA 60.227 57.895 0.00 0.00 0.00 3.72
6277 6590 2.598632 GCGCTCCACAGACACACAC 61.599 63.158 0.00 0.00 0.00 3.82
6312 6625 5.705441 CACTTTGAAGCATTTAGGACAGGTA 59.295 40.000 0.00 0.00 0.00 3.08
6313 6626 4.520492 CACTTTGAAGCATTTAGGACAGGT 59.480 41.667 0.00 0.00 0.00 4.00
6314 6627 4.616835 GCACTTTGAAGCATTTAGGACAGG 60.617 45.833 0.00 0.00 0.00 4.00
6315 6628 4.022935 TGCACTTTGAAGCATTTAGGACAG 60.023 41.667 0.00 0.00 35.51 3.51
6316 6629 3.888323 TGCACTTTGAAGCATTTAGGACA 59.112 39.130 0.00 0.00 35.51 4.02
6317 6630 4.479619 CTGCACTTTGAAGCATTTAGGAC 58.520 43.478 0.00 0.00 40.42 3.85
6318 6631 3.057315 GCTGCACTTTGAAGCATTTAGGA 60.057 43.478 0.93 0.00 40.42 2.94
6395 6708 7.486407 AGGAACGGAGGAAGTACTATTTTTA 57.514 36.000 0.00 0.00 0.00 1.52
6402 6715 7.672122 AATATTTAGGAACGGAGGAAGTACT 57.328 36.000 0.00 0.00 0.00 2.73
6403 6716 7.767659 ACAAATATTTAGGAACGGAGGAAGTAC 59.232 37.037 0.00 0.00 0.00 2.73
6404 6717 7.854337 ACAAATATTTAGGAACGGAGGAAGTA 58.146 34.615 0.00 0.00 0.00 2.24
6405 6718 6.718294 ACAAATATTTAGGAACGGAGGAAGT 58.282 36.000 0.00 0.00 0.00 3.01
6406 6719 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
6407 6720 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
6408 6721 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
6409 6722 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
6410 6723 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
6411 6724 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
6412 6725 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
6425 6738 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
6426 6739 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
6427 6740 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
6428 6741 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
6429 6742 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
6430 6743 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
6436 6749 9.737427 CGTATATAGTCACTTGTTGAAATCTCT 57.263 33.333 0.00 0.00 35.39 3.10
6437 6750 8.969267 CCGTATATAGTCACTTGTTGAAATCTC 58.031 37.037 0.00 0.00 35.39 2.75
6438 6751 8.692710 TCCGTATATAGTCACTTGTTGAAATCT 58.307 33.333 0.00 0.00 35.39 2.40
6439 6752 8.867112 TCCGTATATAGTCACTTGTTGAAATC 57.133 34.615 0.00 0.00 35.39 2.17
6440 6753 7.438459 GCTCCGTATATAGTCACTTGTTGAAAT 59.562 37.037 0.00 0.00 35.39 2.17
6441 6754 6.755141 GCTCCGTATATAGTCACTTGTTGAAA 59.245 38.462 0.00 0.00 35.39 2.69
6442 6755 6.127563 TGCTCCGTATATAGTCACTTGTTGAA 60.128 38.462 0.00 0.00 35.39 2.69
6443 6756 5.358725 TGCTCCGTATATAGTCACTTGTTGA 59.641 40.000 0.00 0.00 0.00 3.18
6444 6757 5.588240 TGCTCCGTATATAGTCACTTGTTG 58.412 41.667 0.00 0.00 0.00 3.33
6445 6758 5.847111 TGCTCCGTATATAGTCACTTGTT 57.153 39.130 0.00 0.00 0.00 2.83
6446 6759 5.847111 TTGCTCCGTATATAGTCACTTGT 57.153 39.130 0.00 0.00 0.00 3.16
6447 6760 7.438160 TCATTTTGCTCCGTATATAGTCACTTG 59.562 37.037 0.00 0.00 0.00 3.16
6448 6761 7.497595 TCATTTTGCTCCGTATATAGTCACTT 58.502 34.615 0.00 0.00 0.00 3.16
6449 6762 7.050970 TCATTTTGCTCCGTATATAGTCACT 57.949 36.000 0.00 0.00 0.00 3.41
6450 6763 6.924060 ACTCATTTTGCTCCGTATATAGTCAC 59.076 38.462 0.00 0.00 0.00 3.67
6451 6764 6.923508 CACTCATTTTGCTCCGTATATAGTCA 59.076 38.462 0.00 0.00 0.00 3.41
6452 6765 7.145985 TCACTCATTTTGCTCCGTATATAGTC 58.854 38.462 0.00 0.00 0.00 2.59
6453 6766 7.050970 TCACTCATTTTGCTCCGTATATAGT 57.949 36.000 0.00 0.00 0.00 2.12
6454 6767 7.946655 TTCACTCATTTTGCTCCGTATATAG 57.053 36.000 0.00 0.00 0.00 1.31
6455 6768 8.367911 AGATTCACTCATTTTGCTCCGTATATA 58.632 33.333 0.00 0.00 0.00 0.86
6456 6769 7.220030 AGATTCACTCATTTTGCTCCGTATAT 58.780 34.615 0.00 0.00 0.00 0.86
6457 6770 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
6458 6771 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
6459 6772 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
6460 6773 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
6461 6774 4.259970 CGTAGATTCACTCATTTTGCTCCG 60.260 45.833 0.00 0.00 0.00 4.63
6462 6775 4.494855 GCGTAGATTCACTCATTTTGCTCC 60.495 45.833 0.00 0.00 0.00 4.70
6463 6776 4.331168 AGCGTAGATTCACTCATTTTGCTC 59.669 41.667 0.00 0.00 0.00 4.26
6464 6777 4.256920 AGCGTAGATTCACTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
6465 6778 4.606457 AGCGTAGATTCACTCATTTTGC 57.394 40.909 0.00 0.00 0.00 3.68
6466 6779 8.948853 TTTAAAGCGTAGATTCACTCATTTTG 57.051 30.769 0.00 0.00 31.23 2.44
6471 6784 9.378551 ACATATTTTAAAGCGTAGATTCACTCA 57.621 29.630 0.00 0.00 31.23 3.41
6472 6785 9.851043 GACATATTTTAAAGCGTAGATTCACTC 57.149 33.333 0.00 0.00 31.23 3.51
6473 6786 9.601217 AGACATATTTTAAAGCGTAGATTCACT 57.399 29.630 0.00 0.00 31.23 3.41
6495 6808 9.387257 ACCATATACGACGAATGTATATAGACA 57.613 33.333 2.07 2.07 41.34 3.41
6500 6813 8.834465 GGACTACCATATACGACGAATGTATAT 58.166 37.037 0.00 10.82 43.07 0.86
6501 6814 7.823799 TGGACTACCATATACGACGAATGTATA 59.176 37.037 0.00 0.00 41.77 1.47
6502 6815 6.656270 TGGACTACCATATACGACGAATGTAT 59.344 38.462 0.00 0.00 41.77 2.29
6503 6816 5.997129 TGGACTACCATATACGACGAATGTA 59.003 40.000 0.00 0.00 41.77 2.29
6504 6817 4.823442 TGGACTACCATATACGACGAATGT 59.177 41.667 0.00 0.00 41.77 2.71
6505 6818 5.366829 TGGACTACCATATACGACGAATG 57.633 43.478 0.00 2.29 41.77 2.67
6519 6832 9.103861 CTTTCTAGAGATTTCAAATGGACTACC 57.896 37.037 0.00 0.00 0.00 3.18
6520 6833 9.877178 TCTTTCTAGAGATTTCAAATGGACTAC 57.123 33.333 0.00 0.00 0.00 2.73
6521 6834 9.877178 GTCTTTCTAGAGATTTCAAATGGACTA 57.123 33.333 0.00 0.00 0.00 2.59
6522 6835 8.378565 TGTCTTTCTAGAGATTTCAAATGGACT 58.621 33.333 0.00 0.00 0.00 3.85
6523 6836 8.553459 TGTCTTTCTAGAGATTTCAAATGGAC 57.447 34.615 0.00 0.00 0.00 4.02
6524 6837 9.573166 TTTGTCTTTCTAGAGATTTCAAATGGA 57.427 29.630 0.00 0.00 0.00 3.41
6537 6850 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
6538 6851 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
6539 6852 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
6540 6853 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
6541 6854 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
6542 6855 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
6543 6856 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
6544 6857 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
6545 6858 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
6546 6859 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
6547 6860 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
6548 6861 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
6549 6862 7.628501 ATTACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
6550 6863 7.628501 AATTACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
6551 6864 7.256083 GCTAATTACTCCCTCCGTTCCTAAATA 60.256 40.741 0.00 0.00 0.00 1.40
6552 6865 5.970501 AATTACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
6553 6866 5.163374 GCTAATTACTCCCTCCGTTCCTAAA 60.163 44.000 0.00 0.00 0.00 1.85
6554 6867 4.343239 GCTAATTACTCCCTCCGTTCCTAA 59.657 45.833 0.00 0.00 0.00 2.69
6555 6868 3.893813 GCTAATTACTCCCTCCGTTCCTA 59.106 47.826 0.00 0.00 0.00 2.94
6556 6869 2.699321 GCTAATTACTCCCTCCGTTCCT 59.301 50.000 0.00 0.00 0.00 3.36
6557 6870 2.433239 TGCTAATTACTCCCTCCGTTCC 59.567 50.000 0.00 0.00 0.00 3.62
6558 6871 3.814005 TGCTAATTACTCCCTCCGTTC 57.186 47.619 0.00 0.00 0.00 3.95
6559 6872 4.409247 AGAATGCTAATTACTCCCTCCGTT 59.591 41.667 0.00 0.00 0.00 4.44
6560 6873 3.967987 AGAATGCTAATTACTCCCTCCGT 59.032 43.478 0.00 0.00 0.00 4.69
6561 6874 4.202264 ACAGAATGCTAATTACTCCCTCCG 60.202 45.833 0.00 0.00 42.53 4.63
6562 6875 5.059833 CACAGAATGCTAATTACTCCCTCC 58.940 45.833 0.00 0.00 42.53 4.30
6563 6876 5.675538 ACACAGAATGCTAATTACTCCCTC 58.324 41.667 0.00 0.00 42.53 4.30
6564 6877 5.189736 TGACACAGAATGCTAATTACTCCCT 59.810 40.000 0.00 0.00 42.53 4.20
6565 6878 5.428253 TGACACAGAATGCTAATTACTCCC 58.572 41.667 0.00 0.00 42.53 4.30
6566 6879 6.763135 TGATGACACAGAATGCTAATTACTCC 59.237 38.462 0.00 0.00 42.53 3.85
6567 6880 7.776933 TGATGACACAGAATGCTAATTACTC 57.223 36.000 0.00 0.00 42.53 2.59
6676 6989 9.678260 ATTTTATTAAGCCCAAATAAATGCACA 57.322 25.926 0.00 0.00 38.14 4.57
6719 7032 9.087871 TCTGAATTCCCATACTTGAATCAAAAA 57.912 29.630 2.27 0.00 31.05 1.94
6735 7049 4.498241 GGTGAAAGCAAATCTGAATTCCC 58.502 43.478 2.27 0.00 0.00 3.97
6748 7062 0.741915 GAAACCCAACGGTGAAAGCA 59.258 50.000 0.00 0.00 43.71 3.91
6750 7064 1.263217 CGAGAAACCCAACGGTGAAAG 59.737 52.381 0.00 0.00 43.71 2.62
6897 7212 7.828717 TGACTTCTTGTTGATAGGCAATCATAA 59.171 33.333 2.19 1.70 44.13 1.90
6915 7230 5.819901 GTGAGGCAGCTTATAATGACTTCTT 59.180 40.000 0.00 0.00 33.97 2.52



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.