Multiple sequence alignment - TraesCS2B01G181500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G181500 chr2B 100.000 3252 0 0 745 3996 156590659 156587408 0.000000e+00 6006
1 TraesCS2B01G181500 chr2B 96.840 633 20 0 1950 2582 40324390 40323758 0.000000e+00 1059
2 TraesCS2B01G181500 chr2B 100.000 519 0 0 1 519 156591403 156590885 0.000000e+00 959
3 TraesCS2B01G181500 chr2D 92.869 1220 57 13 745 1951 106625755 106624553 0.000000e+00 1744
4 TraesCS2B01G181500 chr2D 91.513 542 21 13 1 519 106626349 106625810 0.000000e+00 723
5 TraesCS2B01G181500 chr2D 93.114 334 19 4 2964 3295 106624468 106624137 1.670000e-133 486
6 TraesCS2B01G181500 chr2D 94.737 95 5 0 2583 2677 106624568 106624474 8.950000e-32 148
7 TraesCS2B01G181500 chr2A 91.454 1217 72 16 745 1940 103098701 103097496 0.000000e+00 1642
8 TraesCS2B01G181500 chr2A 93.028 545 11 5 1 519 103099293 103098750 0.000000e+00 771
9 TraesCS2B01G181500 chr2A 85.039 127 13 5 2964 3088 103097399 103097277 1.510000e-24 124
10 TraesCS2B01G181500 chr2A 90.805 87 6 2 2593 2677 103097491 103097405 9.070000e-22 115
11 TraesCS2B01G181500 chr1B 97.795 635 13 1 1949 2582 269218256 269218890 0.000000e+00 1094
12 TraesCS2B01G181500 chr1B 97.319 634 17 0 1949 2582 644278846 644278213 0.000000e+00 1077
13 TraesCS2B01G181500 chr1B 96.860 637 19 1 1946 2582 25227104 25227739 0.000000e+00 1064
14 TraesCS2B01G181500 chr1B 96.989 631 19 0 1952 2582 390273123 390272493 0.000000e+00 1061
15 TraesCS2B01G181500 chr1B 82.615 696 105 9 3310 3993 204989799 204990490 5.710000e-168 601
16 TraesCS2B01G181500 chr1B 83.096 491 65 10 3517 3996 140009542 140010025 7.930000e-117 431
17 TraesCS2B01G181500 chr6B 97.472 633 16 0 1950 2582 21064050 21063418 0.000000e+00 1081
18 TraesCS2B01G181500 chr6B 96.855 636 19 1 1948 2582 51010055 51009420 0.000000e+00 1062
19 TraesCS2B01G181500 chr6B 84.136 353 48 8 3311 3660 711913108 711913455 6.400000e-88 335
20 TraesCS2B01G181500 chr4B 97.156 633 18 0 1950 2582 629957935 629957303 0.000000e+00 1070
21 TraesCS2B01G181500 chr3A 96.835 632 20 0 1951 2582 735599533 735598902 0.000000e+00 1057
22 TraesCS2B01G181500 chr3A 80.863 695 121 8 3311 3996 491173052 491173743 1.630000e-148 536
23 TraesCS2B01G181500 chr7D 83.788 697 97 13 3311 3996 621886022 621885331 0.000000e+00 647
24 TraesCS2B01G181500 chr3D 83.866 688 93 11 3311 3996 152475165 152474494 1.210000e-179 640
25 TraesCS2B01G181500 chr3D 82.684 693 106 10 3311 3993 269187896 269188584 1.590000e-168 603
26 TraesCS2B01G181500 chr6D 83.333 696 103 6 3311 3996 467077024 467077716 7.290000e-177 630
27 TraesCS2B01G181500 chr6D 83.075 644 97 9 3311 3944 467051610 467052251 3.460000e-160 575
28 TraesCS2B01G181500 chr6D 82.824 425 60 7 3583 3996 408869340 408868918 6.310000e-98 368
29 TraesCS2B01G181500 chr5B 86.528 579 65 6 3427 3995 686637123 686637698 3.390000e-175 625
30 TraesCS2B01G181500 chr5B 86.356 579 65 7 3427 3995 686656911 686657485 1.580000e-173 619
31 TraesCS2B01G181500 chr5B 86.356 579 66 6 3427 3995 686671559 686672134 1.580000e-173 619
32 TraesCS2B01G181500 chrUn 86.356 579 66 6 3427 3995 316699277 316698702 1.580000e-173 619
33 TraesCS2B01G181500 chrUn 82.184 696 111 5 3311 3995 132098407 132099100 1.600000e-163 586
34 TraesCS2B01G181500 chrUn 79.399 699 107 18 3310 3996 132092062 132092735 3.640000e-125 459
35 TraesCS2B01G181500 chrUn 81.911 293 50 3 2676 2966 280025573 280025282 1.110000e-60 244
36 TraesCS2B01G181500 chr6A 77.266 695 132 16 3311 3985 300499605 300500293 6.260000e-103 385
37 TraesCS2B01G181500 chr6A 87.838 296 34 2 2672 2965 5304394 5304099 2.960000e-91 346
38 TraesCS2B01G181500 chr1A 88.629 299 31 3 2669 2964 428576670 428576968 1.060000e-95 361
39 TraesCS2B01G181500 chr7B 88.514 296 28 5 2669 2962 697277992 697277701 1.770000e-93 353
40 TraesCS2B01G181500 chr4A 89.051 274 28 2 2672 2943 33728340 33728613 4.950000e-89 339
41 TraesCS2B01G181500 chr5A 81.695 295 51 3 2676 2968 467740357 467740650 3.990000e-60 243
42 TraesCS2B01G181500 chr5A 82.230 287 44 6 2683 2964 590315567 590315283 1.430000e-59 241
43 TraesCS2B01G181500 chr5A 81.293 294 52 3 2676 2967 478317731 478317439 6.680000e-58 235
44 TraesCS2B01G181500 chr1D 81.787 291 50 3 2676 2964 111006474 111006185 1.430000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G181500 chr2B 156587408 156591403 3995 True 3482.50 6006 100.00000 1 3996 2 chr2B.!!$R2 3995
1 TraesCS2B01G181500 chr2B 40323758 40324390 632 True 1059.00 1059 96.84000 1950 2582 1 chr2B.!!$R1 632
2 TraesCS2B01G181500 chr2D 106624137 106626349 2212 True 775.25 1744 93.05825 1 3295 4 chr2D.!!$R1 3294
3 TraesCS2B01G181500 chr2A 103097277 103099293 2016 True 663.00 1642 90.08150 1 3088 4 chr2A.!!$R1 3087
4 TraesCS2B01G181500 chr1B 269218256 269218890 634 False 1094.00 1094 97.79500 1949 2582 1 chr1B.!!$F4 633
5 TraesCS2B01G181500 chr1B 644278213 644278846 633 True 1077.00 1077 97.31900 1949 2582 1 chr1B.!!$R2 633
6 TraesCS2B01G181500 chr1B 25227104 25227739 635 False 1064.00 1064 96.86000 1946 2582 1 chr1B.!!$F1 636
7 TraesCS2B01G181500 chr1B 390272493 390273123 630 True 1061.00 1061 96.98900 1952 2582 1 chr1B.!!$R1 630
8 TraesCS2B01G181500 chr1B 204989799 204990490 691 False 601.00 601 82.61500 3310 3993 1 chr1B.!!$F3 683
9 TraesCS2B01G181500 chr6B 21063418 21064050 632 True 1081.00 1081 97.47200 1950 2582 1 chr6B.!!$R1 632
10 TraesCS2B01G181500 chr6B 51009420 51010055 635 True 1062.00 1062 96.85500 1948 2582 1 chr6B.!!$R2 634
11 TraesCS2B01G181500 chr4B 629957303 629957935 632 True 1070.00 1070 97.15600 1950 2582 1 chr4B.!!$R1 632
12 TraesCS2B01G181500 chr3A 735598902 735599533 631 True 1057.00 1057 96.83500 1951 2582 1 chr3A.!!$R1 631
13 TraesCS2B01G181500 chr3A 491173052 491173743 691 False 536.00 536 80.86300 3311 3996 1 chr3A.!!$F1 685
14 TraesCS2B01G181500 chr7D 621885331 621886022 691 True 647.00 647 83.78800 3311 3996 1 chr7D.!!$R1 685
15 TraesCS2B01G181500 chr3D 152474494 152475165 671 True 640.00 640 83.86600 3311 3996 1 chr3D.!!$R1 685
16 TraesCS2B01G181500 chr3D 269187896 269188584 688 False 603.00 603 82.68400 3311 3993 1 chr3D.!!$F1 682
17 TraesCS2B01G181500 chr6D 467077024 467077716 692 False 630.00 630 83.33300 3311 3996 1 chr6D.!!$F2 685
18 TraesCS2B01G181500 chr6D 467051610 467052251 641 False 575.00 575 83.07500 3311 3944 1 chr6D.!!$F1 633
19 TraesCS2B01G181500 chr5B 686637123 686637698 575 False 625.00 625 86.52800 3427 3995 1 chr5B.!!$F1 568
20 TraesCS2B01G181500 chr5B 686656911 686657485 574 False 619.00 619 86.35600 3427 3995 1 chr5B.!!$F2 568
21 TraesCS2B01G181500 chr5B 686671559 686672134 575 False 619.00 619 86.35600 3427 3995 1 chr5B.!!$F3 568
22 TraesCS2B01G181500 chrUn 316698702 316699277 575 True 619.00 619 86.35600 3427 3995 1 chrUn.!!$R2 568
23 TraesCS2B01G181500 chrUn 132098407 132099100 693 False 586.00 586 82.18400 3311 3995 1 chrUn.!!$F2 684
24 TraesCS2B01G181500 chrUn 132092062 132092735 673 False 459.00 459 79.39900 3310 3996 1 chrUn.!!$F1 686
25 TraesCS2B01G181500 chr6A 300499605 300500293 688 False 385.00 385 77.26600 3311 3985 1 chr6A.!!$F1 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 1.069378 CGACGGCGTGGTAAGTTCTC 61.069 60.0 21.19 0.0 0.0 2.87 F
1248 1306 0.740868 TCGCCTCTTCAAGCAATCCG 60.741 55.0 0.00 0.0 0.0 4.18 F
2847 2907 0.041839 CACGCTGCCTTCGATTATGC 60.042 55.0 0.00 0.0 0.0 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 1885 0.179045 GTCAATGAGCGCCCCAGTAT 60.179 55.000 2.29 0.00 0.00 2.12 R
2958 3018 0.036306 ACGAACCAAGTAAGCAGGGG 59.964 55.000 0.00 0.00 0.00 4.79 R
3690 3761 3.641648 CGCAATATAAGCAATTGGTGGG 58.358 45.455 11.56 2.12 35.34 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 1.069378 CGACGGCGTGGTAAGTTCTC 61.069 60.000 21.19 0.00 0.00 2.87
184 210 3.833706 GCTAATTGAGCGCATGGTC 57.166 52.632 11.47 0.00 42.62 4.02
204 230 3.444388 GTCTTGTTCTGTAGGACCTCGAT 59.556 47.826 0.00 0.00 0.00 3.59
289 315 2.025155 TCCTGACGCTGGTTAGAGATC 58.975 52.381 0.00 0.00 31.74 2.75
301 327 6.457934 GCTGGTTAGAGATCAATCATGTGTTG 60.458 42.308 0.00 7.10 0.00 3.33
772 799 6.012858 TGCCTTTTTCTAGATGAAGTCCCTAA 60.013 38.462 12.17 0.00 35.89 2.69
773 800 6.884836 GCCTTTTTCTAGATGAAGTCCCTAAA 59.115 38.462 12.17 0.00 35.89 1.85
854 890 5.607119 AACCACACTAAATTGTCATCGAC 57.393 39.130 0.00 0.00 0.00 4.20
926 967 3.958798 CGATGGTCTAACCCTCTTCCTAA 59.041 47.826 0.00 0.00 37.50 2.69
939 980 5.046014 CCCTCTTCCTAATCCGATCATCAAT 60.046 44.000 0.00 0.00 0.00 2.57
986 1027 2.180159 GAAGCCAGTTCAGCCGGGTA 62.180 60.000 5.47 0.00 34.97 3.69
1030 1071 2.466571 GCGTGTACGTACATGACATAGC 59.533 50.000 39.18 25.65 44.02 2.97
1031 1072 3.791122 GCGTGTACGTACATGACATAGCT 60.791 47.826 39.18 0.00 44.02 3.32
1146 1195 1.194781 ACTCGACCATGGCTCAGGTT 61.195 55.000 13.04 0.00 38.50 3.50
1148 1197 1.191489 TCGACCATGGCTCAGGTTGA 61.191 55.000 13.04 8.73 44.18 3.18
1149 1198 1.021390 CGACCATGGCTCAGGTTGAC 61.021 60.000 13.04 0.00 41.03 3.18
1150 1199 1.003355 ACCATGGCTCAGGTTGACG 60.003 57.895 13.04 0.00 33.39 4.35
1151 1200 1.746615 CCATGGCTCAGGTTGACGG 60.747 63.158 0.00 0.00 0.00 4.79
1152 1201 2.045926 ATGGCTCAGGTTGACGGC 60.046 61.111 0.00 0.00 0.00 5.68
1153 1202 3.958147 ATGGCTCAGGTTGACGGCG 62.958 63.158 4.80 4.80 0.00 6.46
1156 1205 4.680237 CTCAGGTTGACGGCGGCA 62.680 66.667 13.60 13.60 0.00 5.69
1237 1295 1.519719 GACCATCAGCTCGCCTCTT 59.480 57.895 0.00 0.00 0.00 2.85
1248 1306 0.740868 TCGCCTCTTCAAGCAATCCG 60.741 55.000 0.00 0.00 0.00 4.18
1784 1842 4.319549 CCTGTTTTACGTGGCTCTCTTTTC 60.320 45.833 0.00 0.00 0.00 2.29
1799 1857 2.619646 TCTTTTCGTGGGTTGGCTTTAC 59.380 45.455 0.00 0.00 0.00 2.01
1872 1930 3.448660 GGTCTGGCTTTAAATTGCTGGAT 59.551 43.478 0.14 0.00 0.00 3.41
2070 2128 0.672342 ACGACTACAAGCACCGAAGT 59.328 50.000 0.00 0.00 0.00 3.01
2222 2280 5.174398 GCCGATGAAAAATAACGTAGATCGA 59.826 40.000 0.00 0.00 42.86 3.59
2435 2493 2.631545 AGTAGGACACACACCCTAACAC 59.368 50.000 0.00 0.00 36.84 3.32
2494 2552 2.124570 CTTGCCAGGATCCACCGG 60.125 66.667 15.82 12.38 44.74 5.28
2582 2640 6.702282 CGAACTCTAACTTTCTTTCTTGGAGT 59.298 38.462 0.00 0.00 37.34 3.85
2583 2641 7.306866 CGAACTCTAACTTTCTTTCTTGGAGTG 60.307 40.741 0.00 0.00 36.28 3.51
2584 2642 6.890293 ACTCTAACTTTCTTTCTTGGAGTGT 58.110 36.000 0.00 0.00 35.22 3.55
2585 2643 7.339482 ACTCTAACTTTCTTTCTTGGAGTGTT 58.661 34.615 0.00 0.00 35.22 3.32
2586 2644 7.829706 ACTCTAACTTTCTTTCTTGGAGTGTTT 59.170 33.333 0.00 0.00 35.22 2.83
2587 2645 7.985476 TCTAACTTTCTTTCTTGGAGTGTTTG 58.015 34.615 0.00 0.00 0.00 2.93
2588 2646 4.998788 ACTTTCTTTCTTGGAGTGTTTGC 58.001 39.130 0.00 0.00 0.00 3.68
2589 2647 4.462483 ACTTTCTTTCTTGGAGTGTTTGCA 59.538 37.500 0.00 0.00 0.00 4.08
2590 2648 4.637483 TTCTTTCTTGGAGTGTTTGCAG 57.363 40.909 0.00 0.00 0.00 4.41
2591 2649 3.884895 TCTTTCTTGGAGTGTTTGCAGA 58.115 40.909 0.00 0.00 0.00 4.26
2592 2650 3.879295 TCTTTCTTGGAGTGTTTGCAGAG 59.121 43.478 0.00 0.00 0.00 3.35
2593 2651 3.281727 TTCTTGGAGTGTTTGCAGAGT 57.718 42.857 0.00 0.00 0.00 3.24
2594 2652 4.415881 TTCTTGGAGTGTTTGCAGAGTA 57.584 40.909 0.00 0.00 0.00 2.59
2631 2691 7.831691 AGAGCTATAGTTTAGCATCAAGAGA 57.168 36.000 14.05 0.00 42.68 3.10
2635 2695 9.323985 AGCTATAGTTTAGCATCAAGAGAAAAG 57.676 33.333 14.05 0.00 42.68 2.27
2647 2707 9.853921 GCATCAAGAGAAAAGTTTTGTAAAATG 57.146 29.630 5.36 5.64 0.00 2.32
2674 2734 8.070034 ACATGGAAAATTGCTCAAATATCTGA 57.930 30.769 0.00 0.00 0.00 3.27
2677 2737 9.947433 ATGGAAAATTGCTCAAATATCTGAAAA 57.053 25.926 0.00 0.00 0.00 2.29
2678 2738 9.775854 TGGAAAATTGCTCAAATATCTGAAAAA 57.224 25.926 0.00 0.00 0.00 1.94
2727 2787 7.202016 GTTATTGAACCTTGTTGTCAGATGA 57.798 36.000 0.00 0.00 0.00 2.92
2728 2788 7.820648 GTTATTGAACCTTGTTGTCAGATGAT 58.179 34.615 0.00 0.00 0.00 2.45
2729 2789 5.694231 TTGAACCTTGTTGTCAGATGATG 57.306 39.130 0.00 0.00 0.00 3.07
2730 2790 4.717877 TGAACCTTGTTGTCAGATGATGT 58.282 39.130 0.00 0.00 0.00 3.06
2731 2791 5.863965 TGAACCTTGTTGTCAGATGATGTA 58.136 37.500 0.00 0.00 0.00 2.29
2732 2792 6.475504 TGAACCTTGTTGTCAGATGATGTAT 58.524 36.000 0.00 0.00 0.00 2.29
2733 2793 6.942005 TGAACCTTGTTGTCAGATGATGTATT 59.058 34.615 0.00 0.00 0.00 1.89
2734 2794 7.448161 TGAACCTTGTTGTCAGATGATGTATTT 59.552 33.333 0.00 0.00 0.00 1.40
2735 2795 7.765695 ACCTTGTTGTCAGATGATGTATTTT 57.234 32.000 0.00 0.00 0.00 1.82
2736 2796 7.596494 ACCTTGTTGTCAGATGATGTATTTTG 58.404 34.615 0.00 0.00 0.00 2.44
2737 2797 7.031372 CCTTGTTGTCAGATGATGTATTTTGG 58.969 38.462 0.00 0.00 0.00 3.28
2738 2798 7.094248 CCTTGTTGTCAGATGATGTATTTTGGA 60.094 37.037 0.00 0.00 0.00 3.53
2739 2799 7.757941 TGTTGTCAGATGATGTATTTTGGAA 57.242 32.000 0.00 0.00 0.00 3.53
2740 2800 8.352137 TGTTGTCAGATGATGTATTTTGGAAT 57.648 30.769 0.00 0.00 0.00 3.01
2741 2801 8.805175 TGTTGTCAGATGATGTATTTTGGAATT 58.195 29.630 0.00 0.00 0.00 2.17
2742 2802 9.643693 GTTGTCAGATGATGTATTTTGGAATTT 57.356 29.630 0.00 0.00 0.00 1.82
2743 2803 9.642327 TTGTCAGATGATGTATTTTGGAATTTG 57.358 29.630 0.00 0.00 0.00 2.32
2744 2804 8.252417 TGTCAGATGATGTATTTTGGAATTTGG 58.748 33.333 0.00 0.00 0.00 3.28
2745 2805 8.469200 GTCAGATGATGTATTTTGGAATTTGGA 58.531 33.333 0.00 0.00 0.00 3.53
2746 2806 8.689061 TCAGATGATGTATTTTGGAATTTGGAG 58.311 33.333 0.00 0.00 0.00 3.86
2747 2807 8.689061 CAGATGATGTATTTTGGAATTTGGAGA 58.311 33.333 0.00 0.00 0.00 3.71
2748 2808 9.430399 AGATGATGTATTTTGGAATTTGGAGAT 57.570 29.630 0.00 0.00 0.00 2.75
2749 2809 9.472361 GATGATGTATTTTGGAATTTGGAGATG 57.528 33.333 0.00 0.00 0.00 2.90
2750 2810 7.267128 TGATGTATTTTGGAATTTGGAGATGC 58.733 34.615 0.00 0.00 0.00 3.91
2751 2811 6.602410 TGTATTTTGGAATTTGGAGATGCA 57.398 33.333 0.00 0.00 0.00 3.96
2752 2812 7.002250 TGTATTTTGGAATTTGGAGATGCAA 57.998 32.000 0.00 0.00 0.00 4.08
2753 2813 7.098477 TGTATTTTGGAATTTGGAGATGCAAG 58.902 34.615 0.00 0.00 0.00 4.01
2754 2814 5.804944 TTTTGGAATTTGGAGATGCAAGA 57.195 34.783 0.00 0.00 0.00 3.02
2755 2815 4.789012 TTGGAATTTGGAGATGCAAGAC 57.211 40.909 0.00 0.00 0.00 3.01
2756 2816 3.765381 TGGAATTTGGAGATGCAAGACA 58.235 40.909 0.00 0.00 0.00 3.41
2757 2817 4.346730 TGGAATTTGGAGATGCAAGACAT 58.653 39.130 0.00 0.00 43.54 3.06
2771 2831 7.934855 ATGCAAGACATCTCTTTCAAGTAAT 57.065 32.000 0.00 0.00 33.97 1.89
2772 2832 7.750229 TGCAAGACATCTCTTTCAAGTAATT 57.250 32.000 0.00 0.00 34.20 1.40
2773 2833 8.169977 TGCAAGACATCTCTTTCAAGTAATTT 57.830 30.769 0.00 0.00 34.20 1.82
2774 2834 8.632679 TGCAAGACATCTCTTTCAAGTAATTTT 58.367 29.630 0.00 0.00 34.20 1.82
2775 2835 9.122613 GCAAGACATCTCTTTCAAGTAATTTTC 57.877 33.333 0.00 0.00 34.20 2.29
2778 2838 9.225436 AGACATCTCTTTCAAGTAATTTTCTCC 57.775 33.333 0.00 0.00 0.00 3.71
2779 2839 8.341892 ACATCTCTTTCAAGTAATTTTCTCCC 57.658 34.615 0.00 0.00 0.00 4.30
2780 2840 8.166726 ACATCTCTTTCAAGTAATTTTCTCCCT 58.833 33.333 0.00 0.00 0.00 4.20
2781 2841 9.018582 CATCTCTTTCAAGTAATTTTCTCCCTT 57.981 33.333 0.00 0.00 0.00 3.95
2812 2872 8.915871 ATCATTATAATACGCATTTTGATGGC 57.084 30.769 0.00 0.00 0.00 4.40
2813 2873 8.109705 TCATTATAATACGCATTTTGATGGCT 57.890 30.769 0.00 0.00 0.00 4.75
2814 2874 9.225436 TCATTATAATACGCATTTTGATGGCTA 57.775 29.630 0.00 0.00 0.00 3.93
2815 2875 9.277565 CATTATAATACGCATTTTGATGGCTAC 57.722 33.333 0.00 0.00 0.00 3.58
2816 2876 3.878086 ATACGCATTTTGATGGCTACG 57.122 42.857 0.00 0.00 0.00 3.51
2817 2877 1.448985 ACGCATTTTGATGGCTACGT 58.551 45.000 0.00 0.00 0.00 3.57
2818 2878 1.810151 ACGCATTTTGATGGCTACGTT 59.190 42.857 0.00 0.00 0.00 3.99
2819 2879 3.004171 ACGCATTTTGATGGCTACGTTA 58.996 40.909 0.00 0.00 0.00 3.18
2820 2880 3.625764 ACGCATTTTGATGGCTACGTTAT 59.374 39.130 0.00 0.00 0.00 1.89
2821 2881 3.968096 CGCATTTTGATGGCTACGTTATG 59.032 43.478 0.00 0.00 0.00 1.90
2822 2882 4.495679 CGCATTTTGATGGCTACGTTATGT 60.496 41.667 0.00 0.00 0.00 2.29
2823 2883 4.734854 GCATTTTGATGGCTACGTTATGTG 59.265 41.667 0.00 0.00 0.00 3.21
2824 2884 4.349663 TTTTGATGGCTACGTTATGTGC 57.650 40.909 0.00 0.00 0.00 4.57
2825 2885 2.979814 TGATGGCTACGTTATGTGCT 57.020 45.000 0.00 0.00 0.00 4.40
2826 2886 3.260475 TGATGGCTACGTTATGTGCTT 57.740 42.857 0.00 0.00 0.00 3.91
2827 2887 4.394439 TGATGGCTACGTTATGTGCTTA 57.606 40.909 0.00 0.00 0.00 3.09
2828 2888 4.116961 TGATGGCTACGTTATGTGCTTAC 58.883 43.478 0.00 0.00 0.00 2.34
2829 2889 3.596310 TGGCTACGTTATGTGCTTACA 57.404 42.857 0.00 0.00 0.00 2.41
2838 2898 3.655481 GTGCTTACACGCTGCCTT 58.345 55.556 0.00 0.00 36.98 4.35
2839 2899 1.497722 GTGCTTACACGCTGCCTTC 59.502 57.895 0.00 0.00 36.98 3.46
2840 2900 2.027073 TGCTTACACGCTGCCTTCG 61.027 57.895 0.00 0.00 0.00 3.79
2841 2901 1.736645 GCTTACACGCTGCCTTCGA 60.737 57.895 0.00 0.00 0.00 3.71
2842 2902 1.084370 GCTTACACGCTGCCTTCGAT 61.084 55.000 0.00 0.00 0.00 3.59
2843 2903 1.359848 CTTACACGCTGCCTTCGATT 58.640 50.000 0.00 0.00 0.00 3.34
2844 2904 2.536365 CTTACACGCTGCCTTCGATTA 58.464 47.619 0.00 0.00 0.00 1.75
2845 2905 2.882927 TACACGCTGCCTTCGATTAT 57.117 45.000 0.00 0.00 0.00 1.28
2846 2906 1.290203 ACACGCTGCCTTCGATTATG 58.710 50.000 0.00 0.00 0.00 1.90
2847 2907 0.041839 CACGCTGCCTTCGATTATGC 60.042 55.000 0.00 0.00 0.00 3.14
2848 2908 1.160329 ACGCTGCCTTCGATTATGCC 61.160 55.000 0.00 0.00 0.00 4.40
2849 2909 1.845809 CGCTGCCTTCGATTATGCCC 61.846 60.000 0.00 0.00 0.00 5.36
2850 2910 1.845809 GCTGCCTTCGATTATGCCCG 61.846 60.000 0.00 0.00 0.00 6.13
2851 2911 0.249868 CTGCCTTCGATTATGCCCGA 60.250 55.000 0.00 0.00 0.00 5.14
2852 2912 0.396435 TGCCTTCGATTATGCCCGAT 59.604 50.000 0.00 0.00 34.58 4.18
2853 2913 1.621317 TGCCTTCGATTATGCCCGATA 59.379 47.619 0.00 0.00 34.58 2.92
2854 2914 2.271800 GCCTTCGATTATGCCCGATAG 58.728 52.381 0.00 0.00 34.58 2.08
2855 2915 2.353803 GCCTTCGATTATGCCCGATAGT 60.354 50.000 0.00 0.00 34.58 2.12
2856 2916 3.864921 GCCTTCGATTATGCCCGATAGTT 60.865 47.826 0.00 0.00 34.58 2.24
2857 2917 3.927142 CCTTCGATTATGCCCGATAGTTC 59.073 47.826 0.00 0.00 34.58 3.01
2858 2918 4.322049 CCTTCGATTATGCCCGATAGTTCT 60.322 45.833 0.00 0.00 34.58 3.01
2859 2919 4.866508 TCGATTATGCCCGATAGTTCTT 57.133 40.909 0.00 0.00 0.00 2.52
2860 2920 4.556233 TCGATTATGCCCGATAGTTCTTG 58.444 43.478 0.00 0.00 0.00 3.02
2861 2921 3.123621 CGATTATGCCCGATAGTTCTTGC 59.876 47.826 0.00 0.00 0.00 4.01
2862 2922 3.838244 TTATGCCCGATAGTTCTTGCT 57.162 42.857 0.00 0.00 0.00 3.91
2863 2923 4.948341 TTATGCCCGATAGTTCTTGCTA 57.052 40.909 0.00 0.00 0.00 3.49
2864 2924 2.890808 TGCCCGATAGTTCTTGCTAG 57.109 50.000 0.00 0.00 0.00 3.42
2865 2925 2.384828 TGCCCGATAGTTCTTGCTAGA 58.615 47.619 0.00 0.00 0.00 2.43
2866 2926 2.764010 TGCCCGATAGTTCTTGCTAGAA 59.236 45.455 6.50 6.50 38.06 2.10
2867 2927 3.388024 TGCCCGATAGTTCTTGCTAGAAT 59.612 43.478 13.68 6.09 42.14 2.40
2868 2928 3.991121 GCCCGATAGTTCTTGCTAGAATC 59.009 47.826 13.68 6.86 42.14 2.52
2869 2929 4.262249 GCCCGATAGTTCTTGCTAGAATCT 60.262 45.833 13.68 13.78 42.14 2.40
2870 2930 5.740513 GCCCGATAGTTCTTGCTAGAATCTT 60.741 44.000 13.68 5.96 42.14 2.40
2871 2931 5.694006 CCCGATAGTTCTTGCTAGAATCTTG 59.306 44.000 13.68 5.92 42.14 3.02
2872 2932 6.461648 CCCGATAGTTCTTGCTAGAATCTTGA 60.462 42.308 13.68 1.04 42.14 3.02
2873 2933 6.980978 CCGATAGTTCTTGCTAGAATCTTGAA 59.019 38.462 13.68 0.44 42.14 2.69
2874 2934 7.492669 CCGATAGTTCTTGCTAGAATCTTGAAA 59.507 37.037 13.68 0.00 42.14 2.69
2875 2935 8.873830 CGATAGTTCTTGCTAGAATCTTGAAAA 58.126 33.333 13.68 0.00 42.14 2.29
2878 2938 8.225603 AGTTCTTGCTAGAATCTTGAAAAACA 57.774 30.769 13.68 0.00 42.14 2.83
2879 2939 8.131731 AGTTCTTGCTAGAATCTTGAAAAACAC 58.868 33.333 13.68 0.00 42.14 3.32
2880 2940 7.566760 TCTTGCTAGAATCTTGAAAAACACA 57.433 32.000 0.00 0.00 0.00 3.72
2881 2941 8.169977 TCTTGCTAGAATCTTGAAAAACACAT 57.830 30.769 0.00 0.00 0.00 3.21
2882 2942 8.632679 TCTTGCTAGAATCTTGAAAAACACATT 58.367 29.630 0.00 0.00 0.00 2.71
2883 2943 9.252962 CTTGCTAGAATCTTGAAAAACACATTT 57.747 29.630 0.00 0.00 0.00 2.32
2893 2953 9.322773 TCTTGAAAAACACATTTATTCAATGCA 57.677 25.926 0.00 0.00 45.74 3.96
2896 2956 9.269453 TGAAAAACACATTTATTCAATGCATCA 57.731 25.926 0.00 0.00 45.74 3.07
2916 2976 7.458677 GCATCATTGCTCAAAAATTTTACTCC 58.541 34.615 3.34 0.00 45.77 3.85
2917 2977 7.332678 GCATCATTGCTCAAAAATTTTACTCCT 59.667 33.333 3.34 0.00 45.77 3.69
2918 2978 9.211485 CATCATTGCTCAAAAATTTTACTCCTT 57.789 29.630 3.34 0.00 0.00 3.36
2919 2979 8.592105 TCATTGCTCAAAAATTTTACTCCTTG 57.408 30.769 3.34 0.00 0.00 3.61
2920 2980 8.203485 TCATTGCTCAAAAATTTTACTCCTTGT 58.797 29.630 3.34 0.00 0.00 3.16
2921 2981 8.829612 CATTGCTCAAAAATTTTACTCCTTGTT 58.170 29.630 3.34 0.00 0.00 2.83
2922 2982 7.769272 TGCTCAAAAATTTTACTCCTTGTTG 57.231 32.000 3.34 0.00 0.00 3.33
2923 2983 7.551585 TGCTCAAAAATTTTACTCCTTGTTGA 58.448 30.769 3.34 0.34 0.00 3.18
2924 2984 8.037758 TGCTCAAAAATTTTACTCCTTGTTGAA 58.962 29.630 3.34 0.00 0.00 2.69
2925 2985 8.542953 GCTCAAAAATTTTACTCCTTGTTGAAG 58.457 33.333 3.34 0.00 0.00 3.02
2926 2986 9.586435 CTCAAAAATTTTACTCCTTGTTGAAGT 57.414 29.630 3.34 0.00 0.00 3.01
2927 2987 9.364989 TCAAAAATTTTACTCCTTGTTGAAGTG 57.635 29.630 3.34 0.00 0.00 3.16
2928 2988 8.603181 CAAAAATTTTACTCCTTGTTGAAGTGG 58.397 33.333 3.34 0.00 0.00 4.00
2929 2989 7.418337 AAATTTTACTCCTTGTTGAAGTGGT 57.582 32.000 0.00 0.00 0.00 4.16
2930 2990 5.828299 TTTTACTCCTTGTTGAAGTGGTG 57.172 39.130 0.00 0.00 0.00 4.17
2931 2991 1.680338 ACTCCTTGTTGAAGTGGTGC 58.320 50.000 0.00 0.00 0.00 5.01
2932 2992 1.064758 ACTCCTTGTTGAAGTGGTGCA 60.065 47.619 0.00 0.00 0.00 4.57
2933 2993 2.233271 CTCCTTGTTGAAGTGGTGCAT 58.767 47.619 0.00 0.00 0.00 3.96
2934 2994 2.227388 CTCCTTGTTGAAGTGGTGCATC 59.773 50.000 0.00 0.00 0.00 3.91
2935 2995 1.069022 CCTTGTTGAAGTGGTGCATCG 60.069 52.381 0.00 0.00 0.00 3.84
2936 2996 0.950836 TTGTTGAAGTGGTGCATCGG 59.049 50.000 0.00 0.00 0.00 4.18
2937 2997 0.888736 TGTTGAAGTGGTGCATCGGG 60.889 55.000 0.00 0.00 0.00 5.14
2938 2998 0.889186 GTTGAAGTGGTGCATCGGGT 60.889 55.000 0.00 0.00 0.00 5.28
2939 2999 0.687920 TTGAAGTGGTGCATCGGGTA 59.312 50.000 0.00 0.00 0.00 3.69
2940 3000 0.687920 TGAAGTGGTGCATCGGGTAA 59.312 50.000 0.00 0.00 0.00 2.85
2941 3001 1.084289 GAAGTGGTGCATCGGGTAAC 58.916 55.000 0.00 0.00 0.00 2.50
2942 3002 0.398696 AAGTGGTGCATCGGGTAACA 59.601 50.000 0.00 0.00 39.74 2.41
2943 3003 0.618458 AGTGGTGCATCGGGTAACAT 59.382 50.000 0.00 0.00 39.74 2.71
2944 3004 1.004277 AGTGGTGCATCGGGTAACATT 59.996 47.619 0.00 0.00 39.74 2.71
2945 3005 1.816224 GTGGTGCATCGGGTAACATTT 59.184 47.619 0.00 0.00 39.74 2.32
2946 3006 1.815613 TGGTGCATCGGGTAACATTTG 59.184 47.619 0.00 0.00 39.74 2.32
2947 3007 1.469079 GGTGCATCGGGTAACATTTGC 60.469 52.381 0.00 0.00 36.77 3.68
2948 3008 1.472480 GTGCATCGGGTAACATTTGCT 59.528 47.619 0.00 0.00 37.05 3.91
2949 3009 1.742831 TGCATCGGGTAACATTTGCTC 59.257 47.619 0.00 0.00 37.05 4.26
2950 3010 1.065551 GCATCGGGTAACATTTGCTCC 59.934 52.381 0.00 0.00 39.74 4.70
2951 3011 2.364632 CATCGGGTAACATTTGCTCCA 58.635 47.619 0.00 0.00 39.74 3.86
2952 3012 2.570415 TCGGGTAACATTTGCTCCAA 57.430 45.000 0.00 0.00 39.74 3.53
2953 3013 2.156098 TCGGGTAACATTTGCTCCAAC 58.844 47.619 0.00 0.00 39.74 3.77
2954 3014 2.159382 CGGGTAACATTTGCTCCAACT 58.841 47.619 0.00 0.00 39.74 3.16
2955 3015 2.161609 CGGGTAACATTTGCTCCAACTC 59.838 50.000 0.00 0.00 39.74 3.01
2956 3016 2.492088 GGGTAACATTTGCTCCAACTCC 59.508 50.000 0.00 0.00 39.74 3.85
2957 3017 2.161609 GGTAACATTTGCTCCAACTCCG 59.838 50.000 0.00 0.00 0.00 4.63
2958 3018 0.598065 AACATTTGCTCCAACTCCGC 59.402 50.000 0.00 0.00 0.00 5.54
2959 3019 1.244019 ACATTTGCTCCAACTCCGCC 61.244 55.000 0.00 0.00 0.00 6.13
2960 3020 1.678970 ATTTGCTCCAACTCCGCCC 60.679 57.895 0.00 0.00 0.00 6.13
2961 3021 3.860930 TTTGCTCCAACTCCGCCCC 62.861 63.158 0.00 0.00 0.00 5.80
2997 3057 8.395633 GGTTCGTGTTATAAATGCTCTGTTAAT 58.604 33.333 0.00 0.00 0.00 1.40
3005 3065 4.939509 AATGCTCTGTTAATAAACGCGT 57.060 36.364 5.58 5.58 38.53 6.01
3006 3066 3.984018 TGCTCTGTTAATAAACGCGTC 57.016 42.857 14.44 0.00 38.53 5.19
3007 3067 3.581755 TGCTCTGTTAATAAACGCGTCT 58.418 40.909 14.44 0.00 38.53 4.18
3136 3197 5.012561 TGAAAACCACATATTTTTCCCCCAG 59.987 40.000 7.53 0.00 39.83 4.45
3232 3294 7.685481 TCTAACTTTCAACACTTCCATCCATA 58.315 34.615 0.00 0.00 0.00 2.74
3285 3347 7.175816 AGCTTTCTCCTTTGACCTCTTATTTTC 59.824 37.037 0.00 0.00 0.00 2.29
3298 3360 8.956533 ACCTCTTATTTTCATCTTCTCTAAGC 57.043 34.615 0.00 0.00 32.36 3.09
3299 3361 8.543774 ACCTCTTATTTTCATCTTCTCTAAGCA 58.456 33.333 0.00 0.00 32.36 3.91
3300 3362 9.388506 CCTCTTATTTTCATCTTCTCTAAGCAA 57.611 33.333 0.00 0.00 32.36 3.91
3338 3400 1.545582 CCAGAATTTGGCACGGTCAAT 59.454 47.619 0.00 0.00 40.87 2.57
3349 3411 6.671614 TGGCACGGTCAATAACTTAATTAG 57.328 37.500 0.00 0.00 0.00 1.73
3359 3421 6.934645 TCAATAACTTAATTAGGATGGCCTCG 59.065 38.462 3.32 0.00 45.54 4.63
3418 3480 6.370433 TTGTCGACATGAACATCTTTGAAA 57.630 33.333 20.80 0.00 0.00 2.69
3454 3516 0.386605 CCGATCTCATCTCGAAGGCG 60.387 60.000 0.00 0.00 38.38 5.52
3482 3544 7.797819 AGTTGTGTTCGAAATACTGAGATTTC 58.202 34.615 0.00 8.68 40.81 2.17
3496 3558 1.754803 AGATTTCGTATCCGGAGCACA 59.245 47.619 11.34 0.00 33.95 4.57
3502 3564 1.671850 CGTATCCGGAGCACAGTTTGT 60.672 52.381 11.34 0.00 0.00 2.83
3515 3577 1.393539 CAGTTTGTCCGATTACGCCTG 59.606 52.381 0.00 0.00 38.29 4.85
3556 3618 9.739276 ATGAGAAAACTTTCTACATGGATTGTA 57.261 29.630 4.71 0.00 46.84 2.41
3668 3739 1.962807 CACCAGACAAAGCCCAATCAA 59.037 47.619 0.00 0.00 0.00 2.57
3690 3761 4.408182 ACATTGTGTCTGATAGGTAGGC 57.592 45.455 0.00 0.00 0.00 3.93
3714 3785 2.287547 ACCAATTGCTTATATTGCGCGG 60.288 45.455 8.83 0.00 32.82 6.46
3732 3804 3.124686 GCGTTTGGCCCACAAGAA 58.875 55.556 0.00 0.00 40.82 2.52
3832 3904 3.047877 CGAGGTCGTTTGTGGCCC 61.048 66.667 0.00 0.00 34.11 5.80
3875 3947 4.964593 TGTTGTCCCAGACTTACCTAAAC 58.035 43.478 0.00 0.00 33.15 2.01
3918 4001 6.101997 GGAAAGATTTGGATGTGATTTGGAC 58.898 40.000 0.00 0.00 0.00 4.02
3927 4010 4.766891 GGATGTGATTTGGACTCCTTTTCA 59.233 41.667 0.00 0.00 0.00 2.69
3978 4061 3.735037 GAAGGGGTGACGGCCGATC 62.735 68.421 35.90 24.82 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 9.511144 TTGACACTATGAACACAGTAATATACG 57.489 33.333 0.00 0.00 0.00 3.06
145 146 6.536731 AGCATAGCTATTCAGAAAACATCG 57.463 37.500 2.64 0.00 36.99 3.84
184 210 3.429547 CCATCGAGGTCCTACAGAACAAG 60.430 52.174 0.00 0.00 33.03 3.16
289 315 4.145876 ACACTTACGCAACACATGATTG 57.854 40.909 0.00 4.85 0.00 2.67
301 327 7.170240 AGAAACTACAAACTAACACTTACGC 57.830 36.000 0.00 0.00 0.00 4.42
749 776 9.467796 AATTTAGGGACTTCATCTAGAAAAAGG 57.532 33.333 17.19 2.44 41.75 3.11
828 857 6.013085 CGATGACAATTTAGTGTGGTTTACG 58.987 40.000 0.00 0.00 0.00 3.18
829 858 7.013529 GTCGATGACAATTTAGTGTGGTTTAC 58.986 38.462 0.00 0.00 32.09 2.01
830 859 6.148150 GGTCGATGACAATTTAGTGTGGTTTA 59.852 38.462 0.00 0.00 33.68 2.01
831 860 5.048991 GGTCGATGACAATTTAGTGTGGTTT 60.049 40.000 0.00 0.00 33.68 3.27
832 861 4.454504 GGTCGATGACAATTTAGTGTGGTT 59.545 41.667 0.00 0.00 33.68 3.67
834 863 3.374058 GGGTCGATGACAATTTAGTGTGG 59.626 47.826 0.00 0.00 33.68 4.17
835 864 3.374058 GGGGTCGATGACAATTTAGTGTG 59.626 47.826 0.00 0.00 33.68 3.82
881 917 1.848932 CGACTCGACCGTCTCACCAA 61.849 60.000 3.64 0.00 0.00 3.67
882 918 2.322830 CGACTCGACCGTCTCACCA 61.323 63.158 3.64 0.00 0.00 4.17
884 920 1.367599 ATCCGACTCGACCGTCTCAC 61.368 60.000 0.00 0.00 0.00 3.51
886 922 1.642753 GATCCGACTCGACCGTCTC 59.357 63.158 0.00 0.00 0.00 3.36
887 923 2.172372 CGATCCGACTCGACCGTCT 61.172 63.158 0.00 0.00 41.12 4.18
926 967 4.070716 GGAAGAAGCATTGATGATCGGAT 58.929 43.478 0.00 0.00 0.00 4.18
939 980 2.871096 ATTAACGTGGGGAAGAAGCA 57.129 45.000 0.00 0.00 0.00 3.91
986 1027 4.520874 CCATATATAGGCTCGTGATCCGAT 59.479 45.833 6.73 0.00 46.23 4.18
1162 1211 2.512286 CATGTCGATGGCGTGGCT 60.512 61.111 0.00 0.00 38.98 4.75
1237 1295 1.741401 CGTGGCTCGGATTGCTTGA 60.741 57.895 0.13 0.00 35.71 3.02
1248 1306 1.202973 CGATGTCGATGACGTGGCTC 61.203 60.000 0.00 0.00 43.02 4.70
1273 1331 4.072088 GACGTGTTTGGCTCCGCG 62.072 66.667 0.00 0.00 40.23 6.46
1784 1842 1.571215 GACCGTAAAGCCAACCCACG 61.571 60.000 0.00 0.00 0.00 4.94
1827 1885 0.179045 GTCAATGAGCGCCCCAGTAT 60.179 55.000 2.29 0.00 0.00 2.12
1872 1930 9.159364 CAGAATTCAGACTTCACATAATCTCAA 57.841 33.333 8.44 0.00 0.00 3.02
1923 1981 5.382303 ACTCTGCAAACAAATCGAAATACG 58.618 37.500 0.00 0.00 44.09 3.06
2222 2280 3.146847 GTGTCTTCGGTTTGGATCCTTT 58.853 45.455 14.23 0.00 0.00 3.11
2591 2649 9.635404 ACTATAGCTCTAACTGAGTCAAATACT 57.365 33.333 0.00 0.00 44.41 2.12
2647 2707 8.814235 CAGATATTTGAGCAATTTTCCATGTTC 58.186 33.333 0.00 0.00 0.00 3.18
2703 2763 7.202016 TCATCTGACAACAAGGTTCAATAAC 57.798 36.000 0.00 0.00 34.66 1.89
2704 2764 7.448161 ACATCATCTGACAACAAGGTTCAATAA 59.552 33.333 0.00 0.00 0.00 1.40
2705 2765 6.942005 ACATCATCTGACAACAAGGTTCAATA 59.058 34.615 0.00 0.00 0.00 1.90
2706 2766 5.771666 ACATCATCTGACAACAAGGTTCAAT 59.228 36.000 0.00 0.00 0.00 2.57
2707 2767 5.132502 ACATCATCTGACAACAAGGTTCAA 58.867 37.500 0.00 0.00 0.00 2.69
2708 2768 4.717877 ACATCATCTGACAACAAGGTTCA 58.282 39.130 0.00 0.00 0.00 3.18
2709 2769 6.992063 ATACATCATCTGACAACAAGGTTC 57.008 37.500 0.00 0.00 0.00 3.62
2710 2770 7.765695 AAATACATCATCTGACAACAAGGTT 57.234 32.000 0.00 0.00 0.00 3.50
2711 2771 7.309377 CCAAAATACATCATCTGACAACAAGGT 60.309 37.037 0.00 0.00 0.00 3.50
2712 2772 7.031372 CCAAAATACATCATCTGACAACAAGG 58.969 38.462 0.00 0.00 0.00 3.61
2713 2773 7.819644 TCCAAAATACATCATCTGACAACAAG 58.180 34.615 0.00 0.00 0.00 3.16
2714 2774 7.757941 TCCAAAATACATCATCTGACAACAA 57.242 32.000 0.00 0.00 0.00 2.83
2715 2775 7.757941 TTCCAAAATACATCATCTGACAACA 57.242 32.000 0.00 0.00 0.00 3.33
2716 2776 9.643693 AAATTCCAAAATACATCATCTGACAAC 57.356 29.630 0.00 0.00 0.00 3.32
2717 2777 9.642327 CAAATTCCAAAATACATCATCTGACAA 57.358 29.630 0.00 0.00 0.00 3.18
2718 2778 8.252417 CCAAATTCCAAAATACATCATCTGACA 58.748 33.333 0.00 0.00 0.00 3.58
2719 2779 8.469200 TCCAAATTCCAAAATACATCATCTGAC 58.531 33.333 0.00 0.00 0.00 3.51
2720 2780 8.592529 TCCAAATTCCAAAATACATCATCTGA 57.407 30.769 0.00 0.00 0.00 3.27
2721 2781 8.689061 TCTCCAAATTCCAAAATACATCATCTG 58.311 33.333 0.00 0.00 0.00 2.90
2722 2782 8.827832 TCTCCAAATTCCAAAATACATCATCT 57.172 30.769 0.00 0.00 0.00 2.90
2723 2783 9.472361 CATCTCCAAATTCCAAAATACATCATC 57.528 33.333 0.00 0.00 0.00 2.92
2724 2784 7.929785 GCATCTCCAAATTCCAAAATACATCAT 59.070 33.333 0.00 0.00 0.00 2.45
2725 2785 7.093421 TGCATCTCCAAATTCCAAAATACATCA 60.093 33.333 0.00 0.00 0.00 3.07
2726 2786 7.267128 TGCATCTCCAAATTCCAAAATACATC 58.733 34.615 0.00 0.00 0.00 3.06
2727 2787 7.185318 TGCATCTCCAAATTCCAAAATACAT 57.815 32.000 0.00 0.00 0.00 2.29
2728 2788 6.602410 TGCATCTCCAAATTCCAAAATACA 57.398 33.333 0.00 0.00 0.00 2.29
2729 2789 7.276438 GTCTTGCATCTCCAAATTCCAAAATAC 59.724 37.037 0.00 0.00 0.00 1.89
2730 2790 7.039152 TGTCTTGCATCTCCAAATTCCAAAATA 60.039 33.333 0.00 0.00 0.00 1.40
2731 2791 6.168389 GTCTTGCATCTCCAAATTCCAAAAT 58.832 36.000 0.00 0.00 0.00 1.82
2732 2792 5.070180 TGTCTTGCATCTCCAAATTCCAAAA 59.930 36.000 0.00 0.00 0.00 2.44
2733 2793 4.588106 TGTCTTGCATCTCCAAATTCCAAA 59.412 37.500 0.00 0.00 0.00 3.28
2734 2794 4.151121 TGTCTTGCATCTCCAAATTCCAA 58.849 39.130 0.00 0.00 0.00 3.53
2735 2795 3.765381 TGTCTTGCATCTCCAAATTCCA 58.235 40.909 0.00 0.00 0.00 3.53
2736 2796 4.996788 ATGTCTTGCATCTCCAAATTCC 57.003 40.909 0.00 0.00 30.67 3.01
2746 2806 5.876612 ACTTGAAAGAGATGTCTTGCATC 57.123 39.130 13.83 5.13 46.21 3.91
2747 2807 7.934855 ATTACTTGAAAGAGATGTCTTGCAT 57.065 32.000 13.83 3.29 46.21 3.96
2748 2808 7.750229 AATTACTTGAAAGAGATGTCTTGCA 57.250 32.000 9.22 9.22 45.43 4.08
2749 2809 9.122613 GAAAATTACTTGAAAGAGATGTCTTGC 57.877 33.333 5.78 4.60 42.59 4.01
2752 2812 9.225436 GGAGAAAATTACTTGAAAGAGATGTCT 57.775 33.333 0.00 0.00 32.81 3.41
2753 2813 8.454894 GGGAGAAAATTACTTGAAAGAGATGTC 58.545 37.037 0.00 0.00 0.00 3.06
2754 2814 8.166726 AGGGAGAAAATTACTTGAAAGAGATGT 58.833 33.333 0.00 0.00 0.00 3.06
2755 2815 8.572855 AGGGAGAAAATTACTTGAAAGAGATG 57.427 34.615 0.00 0.00 0.00 2.90
2787 2847 8.742777 AGCCATCAAAATGCGTATTATAATGAT 58.257 29.630 8.28 5.27 0.00 2.45
2788 2848 8.109705 AGCCATCAAAATGCGTATTATAATGA 57.890 30.769 8.28 3.18 0.00 2.57
2789 2849 9.277565 GTAGCCATCAAAATGCGTATTATAATG 57.722 33.333 8.28 3.83 0.00 1.90
2790 2850 8.175069 CGTAGCCATCAAAATGCGTATTATAAT 58.825 33.333 0.00 2.97 0.00 1.28
2791 2851 7.171848 ACGTAGCCATCAAAATGCGTATTATAA 59.828 33.333 0.00 0.00 29.76 0.98
2792 2852 6.647481 ACGTAGCCATCAAAATGCGTATTATA 59.353 34.615 0.00 0.00 29.76 0.98
2793 2853 5.468746 ACGTAGCCATCAAAATGCGTATTAT 59.531 36.000 0.00 0.00 29.76 1.28
2794 2854 4.812091 ACGTAGCCATCAAAATGCGTATTA 59.188 37.500 0.00 0.00 29.76 0.98
2795 2855 3.625764 ACGTAGCCATCAAAATGCGTATT 59.374 39.130 0.00 0.00 29.76 1.89
2796 2856 3.202906 ACGTAGCCATCAAAATGCGTAT 58.797 40.909 0.00 0.00 29.76 3.06
2797 2857 2.623535 ACGTAGCCATCAAAATGCGTA 58.376 42.857 0.00 0.00 29.76 4.42
2798 2858 1.448985 ACGTAGCCATCAAAATGCGT 58.551 45.000 0.00 0.00 0.00 5.24
2799 2859 2.542766 AACGTAGCCATCAAAATGCG 57.457 45.000 0.00 0.00 0.00 4.73
2800 2860 4.734854 CACATAACGTAGCCATCAAAATGC 59.265 41.667 0.00 0.00 0.00 3.56
2801 2861 4.734854 GCACATAACGTAGCCATCAAAATG 59.265 41.667 0.00 0.00 0.00 2.32
2802 2862 4.640201 AGCACATAACGTAGCCATCAAAAT 59.360 37.500 0.00 0.00 0.00 1.82
2803 2863 4.006989 AGCACATAACGTAGCCATCAAAA 58.993 39.130 0.00 0.00 0.00 2.44
2804 2864 3.605634 AGCACATAACGTAGCCATCAAA 58.394 40.909 0.00 0.00 0.00 2.69
2805 2865 3.260475 AGCACATAACGTAGCCATCAA 57.740 42.857 0.00 0.00 0.00 2.57
2806 2866 2.979814 AGCACATAACGTAGCCATCA 57.020 45.000 0.00 0.00 0.00 3.07
2807 2867 4.025979 GTGTAAGCACATAACGTAGCCATC 60.026 45.833 0.00 0.00 44.64 3.51
2808 2868 3.869246 GTGTAAGCACATAACGTAGCCAT 59.131 43.478 0.00 0.00 44.64 4.40
2809 2869 3.255725 GTGTAAGCACATAACGTAGCCA 58.744 45.455 0.00 0.00 44.64 4.75
2810 2870 2.280708 CGTGTAAGCACATAACGTAGCC 59.719 50.000 0.00 0.00 45.50 3.93
2811 2871 2.284855 GCGTGTAAGCACATAACGTAGC 60.285 50.000 0.00 0.00 45.50 3.58
2812 2872 3.001070 CAGCGTGTAAGCACATAACGTAG 60.001 47.826 0.00 0.00 45.50 3.51
2813 2873 2.918600 CAGCGTGTAAGCACATAACGTA 59.081 45.455 0.00 0.00 45.50 3.57
2814 2874 1.724623 CAGCGTGTAAGCACATAACGT 59.275 47.619 0.00 0.00 45.50 3.99
2815 2875 1.526986 GCAGCGTGTAAGCACATAACG 60.527 52.381 0.00 0.00 45.50 3.18
2816 2876 1.202031 GGCAGCGTGTAAGCACATAAC 60.202 52.381 0.00 0.00 45.50 1.89
2817 2877 1.083489 GGCAGCGTGTAAGCACATAA 58.917 50.000 0.00 0.00 45.50 1.90
2818 2878 0.249120 AGGCAGCGTGTAAGCACATA 59.751 50.000 0.00 0.00 45.50 2.29
2819 2879 0.606401 AAGGCAGCGTGTAAGCACAT 60.606 50.000 0.00 0.00 45.50 3.21
2820 2880 1.227823 AAGGCAGCGTGTAAGCACA 60.228 52.632 0.00 0.00 45.50 4.57
2821 2881 1.497722 GAAGGCAGCGTGTAAGCAC 59.502 57.895 0.00 0.00 41.97 4.40
2822 2882 2.027073 CGAAGGCAGCGTGTAAGCA 61.027 57.895 0.00 0.00 40.15 3.91
2823 2883 1.084370 ATCGAAGGCAGCGTGTAAGC 61.084 55.000 0.00 0.00 37.41 3.09
2824 2884 1.359848 AATCGAAGGCAGCGTGTAAG 58.640 50.000 0.00 0.00 0.00 2.34
2825 2885 2.658373 TAATCGAAGGCAGCGTGTAA 57.342 45.000 0.00 0.00 0.00 2.41
2826 2886 2.469826 CATAATCGAAGGCAGCGTGTA 58.530 47.619 0.00 0.00 0.00 2.90
2827 2887 1.290203 CATAATCGAAGGCAGCGTGT 58.710 50.000 0.00 0.00 0.00 4.49
2828 2888 0.041839 GCATAATCGAAGGCAGCGTG 60.042 55.000 0.00 0.00 0.00 5.34
2829 2889 1.160329 GGCATAATCGAAGGCAGCGT 61.160 55.000 0.00 0.00 0.00 5.07
2830 2890 1.571460 GGCATAATCGAAGGCAGCG 59.429 57.895 0.00 0.00 0.00 5.18
2831 2891 1.845809 CGGGCATAATCGAAGGCAGC 61.846 60.000 0.00 0.00 0.00 5.25
2832 2892 0.249868 TCGGGCATAATCGAAGGCAG 60.250 55.000 0.00 0.00 32.11 4.85
2833 2893 0.396435 ATCGGGCATAATCGAAGGCA 59.604 50.000 0.00 0.00 38.92 4.75
2834 2894 2.271800 CTATCGGGCATAATCGAAGGC 58.728 52.381 0.00 0.00 38.92 4.35
2835 2895 3.594603 ACTATCGGGCATAATCGAAGG 57.405 47.619 0.00 0.00 38.92 3.46
2836 2896 4.810790 AGAACTATCGGGCATAATCGAAG 58.189 43.478 0.00 0.00 38.92 3.79
2837 2897 4.866508 AGAACTATCGGGCATAATCGAA 57.133 40.909 0.00 0.00 38.92 3.71
2838 2898 4.556233 CAAGAACTATCGGGCATAATCGA 58.444 43.478 0.00 0.00 39.79 3.59
2839 2899 3.123621 GCAAGAACTATCGGGCATAATCG 59.876 47.826 0.00 0.00 32.12 3.34
2840 2900 4.319177 AGCAAGAACTATCGGGCATAATC 58.681 43.478 0.00 0.00 33.60 1.75
2841 2901 4.357918 AGCAAGAACTATCGGGCATAAT 57.642 40.909 0.00 0.00 33.60 1.28
2842 2902 3.838244 AGCAAGAACTATCGGGCATAA 57.162 42.857 0.00 0.00 33.60 1.90
2843 2903 4.149598 TCTAGCAAGAACTATCGGGCATA 58.850 43.478 0.00 0.00 33.60 3.14
2844 2904 2.965831 TCTAGCAAGAACTATCGGGCAT 59.034 45.455 0.00 0.00 33.60 4.40
2845 2905 2.384828 TCTAGCAAGAACTATCGGGCA 58.615 47.619 0.00 0.00 33.60 5.36
2846 2906 3.454371 TTCTAGCAAGAACTATCGGGC 57.546 47.619 0.00 0.00 36.80 6.13
2847 2907 5.461032 AGATTCTAGCAAGAACTATCGGG 57.539 43.478 0.00 0.00 44.40 5.14
2848 2908 6.507900 TCAAGATTCTAGCAAGAACTATCGG 58.492 40.000 0.00 0.00 44.40 4.18
2849 2909 7.993821 TTCAAGATTCTAGCAAGAACTATCG 57.006 36.000 0.00 0.00 44.40 2.92
2852 2912 9.337396 TGTTTTTCAAGATTCTAGCAAGAACTA 57.663 29.630 0.00 0.00 44.40 2.24
2853 2913 8.131731 GTGTTTTTCAAGATTCTAGCAAGAACT 58.868 33.333 0.00 0.00 44.40 3.01
2854 2914 7.915397 TGTGTTTTTCAAGATTCTAGCAAGAAC 59.085 33.333 0.00 0.00 44.40 3.01
2855 2915 7.995289 TGTGTTTTTCAAGATTCTAGCAAGAA 58.005 30.769 0.00 0.00 45.63 2.52
2856 2916 7.566760 TGTGTTTTTCAAGATTCTAGCAAGA 57.433 32.000 0.00 0.00 0.00 3.02
2857 2917 8.807667 AATGTGTTTTTCAAGATTCTAGCAAG 57.192 30.769 0.00 0.00 0.00 4.01
2867 2927 9.322773 TGCATTGAATAAATGTGTTTTTCAAGA 57.677 25.926 9.46 0.00 46.37 3.02
2870 2930 9.269453 TGATGCATTGAATAAATGTGTTTTTCA 57.731 25.926 0.00 0.00 46.37 2.69
2892 2952 8.767478 AGGAGTAAAATTTTTGAGCAATGATG 57.233 30.769 9.06 0.00 0.00 3.07
2893 2953 9.211485 CAAGGAGTAAAATTTTTGAGCAATGAT 57.789 29.630 9.06 0.00 0.00 2.45
2894 2954 8.203485 ACAAGGAGTAAAATTTTTGAGCAATGA 58.797 29.630 9.06 0.00 0.00 2.57
2895 2955 8.369218 ACAAGGAGTAAAATTTTTGAGCAATG 57.631 30.769 9.06 4.14 0.00 2.82
2896 2956 8.829612 CAACAAGGAGTAAAATTTTTGAGCAAT 58.170 29.630 9.06 0.00 0.00 3.56
2897 2957 8.037758 TCAACAAGGAGTAAAATTTTTGAGCAA 58.962 29.630 9.06 0.00 0.00 3.91
2898 2958 7.551585 TCAACAAGGAGTAAAATTTTTGAGCA 58.448 30.769 9.06 0.00 0.00 4.26
2899 2959 8.419076 TTCAACAAGGAGTAAAATTTTTGAGC 57.581 30.769 9.06 0.00 0.00 4.26
2900 2960 9.586435 ACTTCAACAAGGAGTAAAATTTTTGAG 57.414 29.630 9.06 0.05 33.37 3.02
2901 2961 9.364989 CACTTCAACAAGGAGTAAAATTTTTGA 57.635 29.630 9.06 0.56 33.37 2.69
2902 2962 8.603181 CCACTTCAACAAGGAGTAAAATTTTTG 58.397 33.333 9.06 2.70 33.37 2.44
2903 2963 8.318412 ACCACTTCAACAAGGAGTAAAATTTTT 58.682 29.630 9.06 0.00 33.37 1.94
2904 2964 7.763985 CACCACTTCAACAAGGAGTAAAATTTT 59.236 33.333 8.75 8.75 33.37 1.82
2905 2965 7.264947 CACCACTTCAACAAGGAGTAAAATTT 58.735 34.615 0.00 0.00 33.37 1.82
2906 2966 6.682861 GCACCACTTCAACAAGGAGTAAAATT 60.683 38.462 0.00 0.00 33.37 1.82
2907 2967 5.221244 GCACCACTTCAACAAGGAGTAAAAT 60.221 40.000 0.00 0.00 33.37 1.82
2908 2968 4.097286 GCACCACTTCAACAAGGAGTAAAA 59.903 41.667 0.00 0.00 33.37 1.52
2909 2969 3.630312 GCACCACTTCAACAAGGAGTAAA 59.370 43.478 0.00 0.00 33.37 2.01
2910 2970 3.211045 GCACCACTTCAACAAGGAGTAA 58.789 45.455 0.00 0.00 33.37 2.24
2911 2971 2.171659 TGCACCACTTCAACAAGGAGTA 59.828 45.455 0.00 0.00 33.37 2.59
2912 2972 1.064758 TGCACCACTTCAACAAGGAGT 60.065 47.619 0.00 0.00 33.37 3.85
2913 2973 1.679139 TGCACCACTTCAACAAGGAG 58.321 50.000 0.00 0.00 33.37 3.69
2914 2974 2.229792 GATGCACCACTTCAACAAGGA 58.770 47.619 0.00 0.00 33.37 3.36
2915 2975 1.069022 CGATGCACCACTTCAACAAGG 60.069 52.381 0.00 0.00 33.37 3.61
2916 2976 1.069022 CCGATGCACCACTTCAACAAG 60.069 52.381 0.00 0.00 35.50 3.16
2917 2977 0.950836 CCGATGCACCACTTCAACAA 59.049 50.000 0.00 0.00 0.00 2.83
2918 2978 0.888736 CCCGATGCACCACTTCAACA 60.889 55.000 0.00 0.00 0.00 3.33
2919 2979 0.889186 ACCCGATGCACCACTTCAAC 60.889 55.000 0.00 0.00 0.00 3.18
2920 2980 0.687920 TACCCGATGCACCACTTCAA 59.312 50.000 0.00 0.00 0.00 2.69
2921 2981 0.687920 TTACCCGATGCACCACTTCA 59.312 50.000 0.00 0.00 0.00 3.02
2922 2982 1.084289 GTTACCCGATGCACCACTTC 58.916 55.000 0.00 0.00 0.00 3.01
2923 2983 0.398696 TGTTACCCGATGCACCACTT 59.601 50.000 0.00 0.00 0.00 3.16
2924 2984 0.618458 ATGTTACCCGATGCACCACT 59.382 50.000 0.00 0.00 0.00 4.00
2925 2985 1.459450 AATGTTACCCGATGCACCAC 58.541 50.000 0.00 0.00 0.00 4.16
2926 2986 1.815613 CAAATGTTACCCGATGCACCA 59.184 47.619 0.00 0.00 0.00 4.17
2927 2987 1.469079 GCAAATGTTACCCGATGCACC 60.469 52.381 0.00 0.00 34.10 5.01
2928 2988 1.472480 AGCAAATGTTACCCGATGCAC 59.528 47.619 0.00 0.00 36.30 4.57
2929 2989 1.742831 GAGCAAATGTTACCCGATGCA 59.257 47.619 0.00 0.00 36.30 3.96
2930 2990 1.065551 GGAGCAAATGTTACCCGATGC 59.934 52.381 0.00 0.00 0.00 3.91
2931 2991 2.364632 TGGAGCAAATGTTACCCGATG 58.635 47.619 0.00 0.00 0.00 3.84
2932 2992 2.752903 GTTGGAGCAAATGTTACCCGAT 59.247 45.455 0.00 0.00 0.00 4.18
2933 2993 2.156098 GTTGGAGCAAATGTTACCCGA 58.844 47.619 0.00 0.00 0.00 5.14
2934 2994 2.159382 AGTTGGAGCAAATGTTACCCG 58.841 47.619 0.00 0.00 0.00 5.28
2935 2995 2.492088 GGAGTTGGAGCAAATGTTACCC 59.508 50.000 0.00 0.00 0.00 3.69
2936 2996 2.161609 CGGAGTTGGAGCAAATGTTACC 59.838 50.000 0.00 0.00 0.00 2.85
2937 2997 2.414161 GCGGAGTTGGAGCAAATGTTAC 60.414 50.000 0.00 0.00 0.00 2.50
2938 2998 1.810151 GCGGAGTTGGAGCAAATGTTA 59.190 47.619 0.00 0.00 0.00 2.41
2939 2999 0.598065 GCGGAGTTGGAGCAAATGTT 59.402 50.000 0.00 0.00 0.00 2.71
2940 3000 1.244019 GGCGGAGTTGGAGCAAATGT 61.244 55.000 0.00 0.00 0.00 2.71
2941 3001 1.508088 GGCGGAGTTGGAGCAAATG 59.492 57.895 0.00 0.00 0.00 2.32
2942 3002 1.678970 GGGCGGAGTTGGAGCAAAT 60.679 57.895 0.00 0.00 0.00 2.32
2943 3003 2.282180 GGGCGGAGTTGGAGCAAA 60.282 61.111 0.00 0.00 0.00 3.68
2944 3004 4.344865 GGGGCGGAGTTGGAGCAA 62.345 66.667 0.00 0.00 0.00 3.91
2946 3006 4.785453 CAGGGGCGGAGTTGGAGC 62.785 72.222 0.00 0.00 0.00 4.70
2947 3007 4.785453 GCAGGGGCGGAGTTGGAG 62.785 72.222 0.00 0.00 0.00 3.86
2957 3017 1.305930 CGAACCAAGTAAGCAGGGGC 61.306 60.000 0.00 0.00 41.61 5.80
2958 3018 0.036306 ACGAACCAAGTAAGCAGGGG 59.964 55.000 0.00 0.00 0.00 4.79
2959 3019 1.156736 CACGAACCAAGTAAGCAGGG 58.843 55.000 0.00 0.00 0.00 4.45
2960 3020 1.878953 ACACGAACCAAGTAAGCAGG 58.121 50.000 0.00 0.00 0.00 4.85
2961 3021 6.715344 TTATAACACGAACCAAGTAAGCAG 57.285 37.500 0.00 0.00 0.00 4.24
2962 3022 7.523219 CATTTATAACACGAACCAAGTAAGCA 58.477 34.615 0.00 0.00 0.00 3.91
2997 3057 2.962125 TGAATAAGGCAGACGCGTTTA 58.038 42.857 15.53 8.14 43.46 2.01
3005 3065 9.578576 AGCAAAGAATATATTGAATAAGGCAGA 57.421 29.630 1.78 0.00 0.00 4.26
3047 3107 9.019656 AGGATGCAACTTATATACAACAAAACA 57.980 29.630 0.00 0.00 0.00 2.83
3117 3178 3.596046 TCTCTGGGGGAAAAATATGTGGT 59.404 43.478 0.00 0.00 0.00 4.16
3130 3191 2.025037 TGGTTTCATGATTCTCTGGGGG 60.025 50.000 0.00 0.00 0.00 5.40
3131 3192 3.019564 GTGGTTTCATGATTCTCTGGGG 58.980 50.000 0.00 0.00 0.00 4.96
3132 3193 3.689347 TGTGGTTTCATGATTCTCTGGG 58.311 45.455 0.00 0.00 0.00 4.45
3136 3197 5.413499 CCCATTTGTGGTTTCATGATTCTC 58.587 41.667 0.00 0.00 0.00 2.87
3203 3265 5.070001 TGGAAGTGTTGAAAGTTAGATGGG 58.930 41.667 0.00 0.00 0.00 4.00
3232 3294 4.851639 AGAAAGAAGCCCATCATAGTGT 57.148 40.909 0.00 0.00 0.00 3.55
3302 3364 7.550906 CCAAATTCTGGTGTTAACAAGGAAAAA 59.449 33.333 10.51 1.25 40.78 1.94
3303 3365 7.044798 CCAAATTCTGGTGTTAACAAGGAAAA 58.955 34.615 10.51 2.30 40.78 2.29
3304 3366 6.578023 CCAAATTCTGGTGTTAACAAGGAAA 58.422 36.000 10.51 3.72 40.78 3.13
3305 3367 6.155475 CCAAATTCTGGTGTTAACAAGGAA 57.845 37.500 10.51 14.20 40.78 3.36
3306 3368 5.782893 CCAAATTCTGGTGTTAACAAGGA 57.217 39.130 10.51 0.00 40.78 3.36
3323 3385 5.968528 TTAAGTTATTGACCGTGCCAAAT 57.031 34.783 0.00 0.00 0.00 2.32
3338 3400 6.488769 TTCGAGGCCATCCTAATTAAGTTA 57.511 37.500 5.01 0.00 44.46 2.24
3349 3411 0.469917 TTCTCCATTCGAGGCCATCC 59.530 55.000 5.01 0.00 39.30 3.51
3387 3449 4.500127 TGTTCATGTCGACAATACGGAAT 58.500 39.130 24.13 0.00 0.00 3.01
3418 3480 0.819259 CGGATGGCGATGACCCAAAT 60.819 55.000 0.00 0.00 35.67 2.32
3454 3516 5.694910 TCTCAGTATTTCGAACACAACTTCC 59.305 40.000 0.00 0.00 0.00 3.46
3496 3558 1.274167 TCAGGCGTAATCGGACAAACT 59.726 47.619 0.00 0.00 37.56 2.66
3502 3564 0.458669 GTCCTTCAGGCGTAATCGGA 59.541 55.000 0.00 0.00 37.56 4.55
3515 3577 1.066143 TCTCATTTGAGGCCGTCCTTC 60.066 52.381 7.68 0.00 44.46 3.46
3556 3618 2.666508 CGACCATTTCAACGAGACGAAT 59.333 45.455 0.00 0.00 0.00 3.34
3668 3739 4.384208 GGCCTACCTATCAGACACAATGTT 60.384 45.833 0.00 0.00 0.00 2.71
3690 3761 3.641648 CGCAATATAAGCAATTGGTGGG 58.358 45.455 11.56 2.12 35.34 4.61
3832 3904 4.201841 ACAGTTCGGTTTTTAGGTTTCACG 60.202 41.667 0.00 0.00 0.00 4.35
3918 4001 3.933332 GACTTCCCGTACATGAAAAGGAG 59.067 47.826 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.