Multiple sequence alignment - TraesCS2B01G180300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G180300 chr2B 100.000 3643 0 0 1 3643 154829810 154833452 0.000000e+00 6728
1 TraesCS2B01G180300 chr2B 100.000 102 0 0 341 442 154830251 154830150 4.800000e-44 189
2 TraesCS2B01G180300 chr2D 91.853 1387 80 14 1690 3054 106123496 106124871 0.000000e+00 1905
3 TraesCS2B01G180300 chr2D 87.256 871 47 22 441 1281 106122091 106122927 0.000000e+00 935
4 TraesCS2B01G180300 chr2D 85.935 647 75 6 2659 3293 620552207 620551565 0.000000e+00 676
5 TraesCS2B01G180300 chr2D 91.391 302 16 3 1383 1684 106122924 106123215 4.380000e-109 405
6 TraesCS2B01G180300 chr2D 85.443 316 20 13 33 342 106121797 106122092 4.570000e-79 305
7 TraesCS2B01G180300 chr2A 92.663 845 32 12 1693 2524 102340699 102341526 0.000000e+00 1190
8 TraesCS2B01G180300 chr2A 83.981 643 88 13 2659 3293 706745877 706745242 1.450000e-168 603
9 TraesCS2B01G180300 chr2A 83.667 649 47 23 680 1281 102339712 102340348 1.140000e-154 556
10 TraesCS2B01G180300 chr2A 90.667 300 23 3 3341 3640 102343738 102344032 9.480000e-106 394
11 TraesCS2B01G180300 chr2A 90.698 301 14 7 1383 1683 102340345 102340631 4.410000e-104 388
12 TraesCS2B01G180300 chr2A 94.634 205 9 2 443 646 102339505 102339708 2.110000e-82 316
13 TraesCS2B01G180300 chr2A 87.218 266 25 8 62 322 102339253 102339514 9.890000e-76 294
14 TraesCS2B01G180300 chr2A 89.109 101 7 4 2564 2663 102341522 102341619 4.940000e-24 122
15 TraesCS2B01G180300 chr3D 85.385 650 77 13 2659 3293 29810209 29810855 0.000000e+00 658
16 TraesCS2B01G180300 chr3D 88.148 135 5 8 317 442 230765777 230765645 2.270000e-32 150
17 TraesCS2B01G180300 chr7D 85.556 630 80 6 2673 3293 605169262 605169889 0.000000e+00 649
18 TraesCS2B01G180300 chr4B 84.284 649 85 10 2659 3293 330748828 330749473 5.170000e-173 617
19 TraesCS2B01G180300 chr4B 80.074 271 52 2 1748 2017 517438388 517438119 2.220000e-47 200
20 TraesCS2B01G180300 chr7B 84.628 631 80 7 2656 3273 665401323 665400697 2.400000e-171 612
21 TraesCS2B01G180300 chr7B 95.455 110 1 3 334 442 125882291 125882185 4.840000e-39 172
22 TraesCS2B01G180300 chr7B 97.087 103 0 2 341 443 125882185 125882284 1.740000e-38 171
23 TraesCS2B01G180300 chr5B 84.000 650 85 9 2659 3293 445179612 445178967 1.120000e-169 606
24 TraesCS2B01G180300 chr5B 91.538 130 10 1 1277 1406 380817571 380817443 1.040000e-40 178
25 TraesCS2B01G180300 chr5B 93.277 119 3 4 340 456 27484841 27484726 1.740000e-38 171
26 TraesCS2B01G180300 chr5B 92.308 117 4 2 340 451 559999858 559999742 1.050000e-35 161
27 TraesCS2B01G180300 chr5D 83.987 612 80 10 2692 3293 507380020 507379417 4.080000e-159 571
28 TraesCS2B01G180300 chr5D 93.443 122 8 0 1268 1389 193234617 193234738 8.040000e-42 182
29 TraesCS2B01G180300 chr1D 81.517 633 99 15 2659 3283 433128866 433129488 4.200000e-139 505
30 TraesCS2B01G180300 chr4A 80.524 267 50 2 1748 2013 45144476 45144741 1.710000e-48 204
31 TraesCS2B01G180300 chr4D 79.630 270 55 0 1748 2017 419338352 419338083 1.030000e-45 195
32 TraesCS2B01G180300 chr6B 96.522 115 4 0 1274 1388 156651550 156651436 1.340000e-44 191
33 TraesCS2B01G180300 chr6B 96.396 111 4 0 1274 1384 143439800 143439910 2.230000e-42 183
34 TraesCS2B01G180300 chr6B 93.388 121 7 1 1278 1397 633918958 633919078 1.040000e-40 178
35 TraesCS2B01G180300 chr6B 94.068 118 5 2 1277 1394 679979077 679978962 1.040000e-40 178
36 TraesCS2B01G180300 chr3B 96.396 111 4 0 1277 1387 779136846 779136956 2.230000e-42 183
37 TraesCS2B01G180300 chr3B 98.058 103 2 0 340 442 23170069 23170171 2.890000e-41 180
38 TraesCS2B01G180300 chr3B 98.039 102 2 0 341 442 23170171 23170070 1.040000e-40 178
39 TraesCS2B01G180300 chr1A 94.215 121 5 2 1275 1395 6706853 6706971 2.230000e-42 183
40 TraesCS2B01G180300 chr1B 94.828 116 5 1 1269 1384 395249029 395248915 2.890000e-41 180
41 TraesCS2B01G180300 chr1B 88.806 134 7 5 341 467 5934823 5934955 1.350000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G180300 chr2B 154829810 154833452 3642 False 6728.000000 6728 100.00000 1 3643 1 chr2B.!!$F1 3642
1 TraesCS2B01G180300 chr2D 106121797 106124871 3074 False 887.500000 1905 88.98575 33 3054 4 chr2D.!!$F1 3021
2 TraesCS2B01G180300 chr2D 620551565 620552207 642 True 676.000000 676 85.93500 2659 3293 1 chr2D.!!$R1 634
3 TraesCS2B01G180300 chr2A 706745242 706745877 635 True 603.000000 603 83.98100 2659 3293 1 chr2A.!!$R1 634
4 TraesCS2B01G180300 chr2A 102339253 102344032 4779 False 465.714286 1190 89.80800 62 3640 7 chr2A.!!$F1 3578
5 TraesCS2B01G180300 chr3D 29810209 29810855 646 False 658.000000 658 85.38500 2659 3293 1 chr3D.!!$F1 634
6 TraesCS2B01G180300 chr7D 605169262 605169889 627 False 649.000000 649 85.55600 2673 3293 1 chr7D.!!$F1 620
7 TraesCS2B01G180300 chr4B 330748828 330749473 645 False 617.000000 617 84.28400 2659 3293 1 chr4B.!!$F1 634
8 TraesCS2B01G180300 chr7B 665400697 665401323 626 True 612.000000 612 84.62800 2656 3273 1 chr7B.!!$R2 617
9 TraesCS2B01G180300 chr5B 445178967 445179612 645 True 606.000000 606 84.00000 2659 3293 1 chr5B.!!$R3 634
10 TraesCS2B01G180300 chr5D 507379417 507380020 603 True 571.000000 571 83.98700 2692 3293 1 chr5D.!!$R1 601
11 TraesCS2B01G180300 chr1D 433128866 433129488 622 False 505.000000 505 81.51700 2659 3283 1 chr1D.!!$F1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 665 0.035820 TAATTCGGCAGCTTCGGGTT 60.036 50.0 6.41 4.92 0.00 4.11 F
1296 1354 0.038744 TACTCCCTCCGTTCGGAACT 59.961 55.0 17.94 0.33 33.41 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 1742 0.734309 ATCGCAATGCAGAAATCGCA 59.266 45.0 5.91 0.0 44.94 5.10 R
3054 3415 0.107214 CCGCCTAGCCCTCATTTTGA 60.107 55.0 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.925724 TCCGATTGGAGTCTCTCTCTC 58.074 52.381 0.00 0.00 40.17 3.20
30 31 2.507886 TCCGATTGGAGTCTCTCTCTCT 59.492 50.000 0.00 0.00 40.17 3.10
31 32 2.878406 CCGATTGGAGTCTCTCTCTCTC 59.122 54.545 0.00 0.00 42.40 3.20
50 51 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
51 52 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
52 53 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
53 54 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
97 100 2.160417 CCTTGTGCGGATTTCTTCTGAC 59.840 50.000 0.00 0.00 31.81 3.51
130 133 5.016173 TGATTTCCCCCAAAAGTATCAGTG 58.984 41.667 0.00 0.00 0.00 3.66
131 134 4.733077 TTTCCCCCAAAAGTATCAGTGA 57.267 40.909 0.00 0.00 0.00 3.41
141 144 6.483307 CCAAAAGTATCAGTGAAGTGTTCTCA 59.517 38.462 0.00 0.00 0.00 3.27
250 257 7.201609 CCACAGCTAAGCGAATTTCAACTTATA 60.202 37.037 8.52 0.00 0.00 0.98
251 258 7.848051 CACAGCTAAGCGAATTTCAACTTATAG 59.152 37.037 8.52 3.46 0.00 1.31
252 259 7.549488 ACAGCTAAGCGAATTTCAACTTATAGT 59.451 33.333 8.52 6.18 0.00 2.12
253 260 9.031360 CAGCTAAGCGAATTTCAACTTATAGTA 57.969 33.333 8.52 0.00 0.00 1.82
254 261 9.032420 AGCTAAGCGAATTTCAACTTATAGTAC 57.968 33.333 8.52 0.00 0.00 2.73
282 289 3.442273 TGCCACCGTTTGATTCCTTAATC 59.558 43.478 0.00 0.00 41.69 1.75
345 352 9.998106 TTAGATTAGATGGCATAAACTTACTCC 57.002 33.333 0.00 0.00 0.00 3.85
346 353 7.454225 AGATTAGATGGCATAAACTTACTCCC 58.546 38.462 0.00 0.00 0.00 4.30
347 354 6.824958 TTAGATGGCATAAACTTACTCCCT 57.175 37.500 0.00 0.00 0.00 4.20
348 355 5.297569 AGATGGCATAAACTTACTCCCTC 57.702 43.478 0.00 0.00 0.00 4.30
349 356 3.926058 TGGCATAAACTTACTCCCTCC 57.074 47.619 0.00 0.00 0.00 4.30
350 357 2.169769 TGGCATAAACTTACTCCCTCCG 59.830 50.000 0.00 0.00 0.00 4.63
351 358 2.169978 GGCATAAACTTACTCCCTCCGT 59.830 50.000 0.00 0.00 0.00 4.69
352 359 3.370209 GGCATAAACTTACTCCCTCCGTT 60.370 47.826 0.00 0.00 0.00 4.44
353 360 3.869832 GCATAAACTTACTCCCTCCGTTC 59.130 47.826 0.00 0.00 0.00 3.95
354 361 2.738013 AAACTTACTCCCTCCGTTCG 57.262 50.000 0.00 0.00 0.00 3.95
355 362 0.893447 AACTTACTCCCTCCGTTCGG 59.107 55.000 4.74 4.74 0.00 4.30
356 363 0.038744 ACTTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
357 364 1.180029 CTTACTCCCTCCGTTCGGAA 58.820 55.000 14.79 0.04 33.41 4.30
358 365 1.755380 CTTACTCCCTCCGTTCGGAAT 59.245 52.381 14.79 2.09 33.41 3.01
359 366 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
360 367 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
361 368 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
362 369 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
363 370 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
364 371 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
365 372 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
366 373 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
367 374 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
368 375 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
369 376 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
370 377 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
371 378 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
372 379 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
373 380 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
374 381 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
375 382 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
376 383 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
377 384 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
378 385 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
379 386 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
380 387 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
381 388 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
382 389 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
383 390 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
384 391 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
385 392 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
386 393 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
387 394 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
388 395 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
389 396 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
390 397 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
391 398 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
392 399 8.112016 TCGGAAATGGATGTATCTAGAACTAG 57.888 38.462 0.00 2.77 34.56 2.57
393 400 7.724506 TCGGAAATGGATGTATCTAGAACTAGT 59.275 37.037 0.00 0.00 34.84 2.57
394 401 8.361139 CGGAAATGGATGTATCTAGAACTAGTT 58.639 37.037 8.13 8.13 34.84 2.24
395 402 9.699703 GGAAATGGATGTATCTAGAACTAGTTC 57.300 37.037 25.24 25.24 39.78 3.01
412 419 9.699703 GAACTAGTTCTAGATACATCCATTTCC 57.300 37.037 25.30 0.00 36.69 3.13
413 420 7.887381 ACTAGTTCTAGATACATCCATTTCCG 58.113 38.462 12.97 0.00 0.00 4.30
414 421 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
415 422 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
416 423 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
417 424 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
418 425 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
419 426 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
420 427 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
421 428 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
422 429 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
423 430 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
424 431 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
425 432 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
426 433 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
427 434 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
428 435 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
429 436 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
430 437 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
431 438 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
432 439 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
433 440 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
434 441 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
435 442 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
436 443 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
437 444 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
438 445 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
439 446 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
486 493 1.642728 TGCGGCAATTTCAATCATGC 58.357 45.000 0.00 0.00 38.06 4.06
646 653 7.176515 TGGGTGGATATTCAATGAATAATTCGG 59.823 37.037 18.25 0.00 37.92 4.30
648 655 7.309133 GGTGGATATTCAATGAATAATTCGGCA 60.309 37.037 18.25 5.86 37.92 5.69
649 656 7.752239 GTGGATATTCAATGAATAATTCGGCAG 59.248 37.037 18.25 0.00 37.92 4.85
652 659 5.581126 TTCAATGAATAATTCGGCAGCTT 57.419 34.783 0.00 0.00 0.00 3.74
655 662 1.939934 TGAATAATTCGGCAGCTTCGG 59.060 47.619 6.41 0.00 0.00 4.30
656 663 1.264288 GAATAATTCGGCAGCTTCGGG 59.736 52.381 6.41 0.00 0.00 5.14
657 664 0.180406 ATAATTCGGCAGCTTCGGGT 59.820 50.000 6.41 0.00 0.00 5.28
658 665 0.035820 TAATTCGGCAGCTTCGGGTT 60.036 50.000 6.41 4.92 0.00 4.11
659 666 0.893727 AATTCGGCAGCTTCGGGTTT 60.894 50.000 6.41 0.00 0.00 3.27
660 667 0.893727 ATTCGGCAGCTTCGGGTTTT 60.894 50.000 6.41 0.00 0.00 2.43
661 668 1.104577 TTCGGCAGCTTCGGGTTTTT 61.105 50.000 6.41 0.00 0.00 1.94
723 733 4.580868 TCGAGTATCCTGTAGCTAGATGG 58.419 47.826 0.00 0.00 0.00 3.51
725 735 4.393680 CGAGTATCCTGTAGCTAGATGGTC 59.606 50.000 0.00 0.00 0.00 4.02
755 765 3.589288 ACCAATCATCCCTAGCCCTATTC 59.411 47.826 0.00 0.00 0.00 1.75
759 769 6.310149 CAATCATCCCTAGCCCTATTCTTTT 58.690 40.000 0.00 0.00 0.00 2.27
760 770 5.310409 TCATCCCTAGCCCTATTCTTTTG 57.690 43.478 0.00 0.00 0.00 2.44
761 771 3.577805 TCCCTAGCCCTATTCTTTTGC 57.422 47.619 0.00 0.00 0.00 3.68
762 772 2.849943 TCCCTAGCCCTATTCTTTTGCA 59.150 45.455 0.00 0.00 0.00 4.08
763 773 3.117888 TCCCTAGCCCTATTCTTTTGCAG 60.118 47.826 0.00 0.00 0.00 4.41
767 777 1.202188 GCCCTATTCTTTTGCAGCGAC 60.202 52.381 0.00 0.00 0.00 5.19
774 784 2.627945 TCTTTTGCAGCGACCGATTAT 58.372 42.857 0.00 0.00 0.00 1.28
790 801 4.201628 CCGATTATCATTTAGCAGCTACGC 60.202 45.833 0.00 0.00 0.00 4.42
808 822 1.318785 CGCATCTCGCAGTTATATCGC 59.681 52.381 0.00 0.00 42.60 4.58
826 840 4.002906 TCGCTAGTTTTCACTCCATGTT 57.997 40.909 0.00 0.00 34.06 2.71
897 923 1.066303 GTCAATTGTGCCGACAAACCA 59.934 47.619 5.13 0.00 45.23 3.67
989 1017 2.604139 CTATCTCCCCTTCTCCTCCAC 58.396 57.143 0.00 0.00 0.00 4.02
990 1018 0.719015 ATCTCCCCTTCTCCTCCACA 59.281 55.000 0.00 0.00 0.00 4.17
991 1019 0.252284 TCTCCCCTTCTCCTCCACAC 60.252 60.000 0.00 0.00 0.00 3.82
992 1020 1.229529 TCCCCTTCTCCTCCACACC 60.230 63.158 0.00 0.00 0.00 4.16
993 1021 1.538876 CCCCTTCTCCTCCACACCA 60.539 63.158 0.00 0.00 0.00 4.17
1012 1040 0.464036 ACACGTCTCCTGCTGAAACA 59.536 50.000 0.00 0.00 0.00 2.83
1015 1043 1.338200 ACGTCTCCTGCTGAAACATCC 60.338 52.381 0.00 0.00 0.00 3.51
1017 1045 0.976641 TCTCCTGCTGAAACATCCGT 59.023 50.000 0.00 0.00 0.00 4.69
1021 1049 3.941483 CTCCTGCTGAAACATCCGTTTAT 59.059 43.478 0.00 0.00 45.40 1.40
1046 1074 1.089112 TCGAGAATACGCAGTTCGGA 58.911 50.000 0.00 0.00 37.78 4.55
1055 1083 1.060713 CGCAGTTCGGAAGTACAGTG 58.939 55.000 0.00 0.00 33.41 3.66
1069 1097 5.065704 AGTACAGTGCTGAACTACTGATG 57.934 43.478 10.95 0.00 45.46 3.07
1071 1099 2.301296 ACAGTGCTGAACTACTGATGCT 59.699 45.455 10.95 0.00 45.46 3.79
1124 1171 4.282195 GGAGGAGGATCATACAAGTCGATT 59.718 45.833 0.00 0.00 36.25 3.34
1126 1173 4.895889 AGGAGGATCATACAAGTCGATTGA 59.104 41.667 12.53 0.69 37.84 2.57
1127 1174 5.541868 AGGAGGATCATACAAGTCGATTGAT 59.458 40.000 12.53 4.74 37.84 2.57
1130 1177 7.330525 GAGGATCATACAAGTCGATTGATCGG 61.331 46.154 12.87 0.50 42.20 4.18
1131 1178 9.384237 GAGGATCATACAAGTCGATTGATCGGA 62.384 44.444 12.87 1.27 42.20 4.55
1140 1197 0.179084 GATTGATCGGACGCTGGGAA 60.179 55.000 0.00 0.00 0.00 3.97
1165 1222 0.469494 TGACCAGAAGACTGCAGCAA 59.531 50.000 15.27 0.00 42.25 3.91
1191 1248 3.552839 CAGCGCTCTTCTGCTCGC 61.553 66.667 7.13 0.00 46.95 5.03
1222 1279 2.048503 GCCAACGCGTCAGGTAGT 60.049 61.111 25.54 2.08 0.00 2.73
1223 1280 1.213537 GCCAACGCGTCAGGTAGTA 59.786 57.895 25.54 0.00 0.00 1.82
1230 1287 1.480219 GCGTCAGGTAGTACATGCGC 61.480 60.000 27.39 27.39 43.33 6.09
1235 1292 2.093711 TCAGGTAGTACATGCGCATTGT 60.094 45.455 22.81 22.74 28.67 2.71
1236 1293 2.285220 CAGGTAGTACATGCGCATTGTC 59.715 50.000 22.81 13.34 0.00 3.18
1263 1321 2.966309 GCTTTCGGCTGGTTCGGTG 61.966 63.158 0.00 0.00 38.06 4.94
1281 1339 0.170561 TGGTCGCTCGCTTTCTACTC 59.829 55.000 0.00 0.00 0.00 2.59
1282 1340 0.525882 GGTCGCTCGCTTTCTACTCC 60.526 60.000 0.00 0.00 0.00 3.85
1283 1341 0.525882 GTCGCTCGCTTTCTACTCCC 60.526 60.000 0.00 0.00 0.00 4.30
1284 1342 0.680280 TCGCTCGCTTTCTACTCCCT 60.680 55.000 0.00 0.00 0.00 4.20
1285 1343 0.248702 CGCTCGCTTTCTACTCCCTC 60.249 60.000 0.00 0.00 0.00 4.30
1286 1344 0.103390 GCTCGCTTTCTACTCCCTCC 59.897 60.000 0.00 0.00 0.00 4.30
1287 1345 0.382515 CTCGCTTTCTACTCCCTCCG 59.617 60.000 0.00 0.00 0.00 4.63
1288 1346 0.323178 TCGCTTTCTACTCCCTCCGT 60.323 55.000 0.00 0.00 0.00 4.69
1289 1347 0.531200 CGCTTTCTACTCCCTCCGTT 59.469 55.000 0.00 0.00 0.00 4.44
1290 1348 1.469423 CGCTTTCTACTCCCTCCGTTC 60.469 57.143 0.00 0.00 0.00 3.95
1291 1349 1.469423 GCTTTCTACTCCCTCCGTTCG 60.469 57.143 0.00 0.00 0.00 3.95
1292 1350 1.134560 CTTTCTACTCCCTCCGTTCGG 59.865 57.143 4.74 4.74 0.00 4.30
1293 1351 0.329261 TTCTACTCCCTCCGTTCGGA 59.671 55.000 13.34 13.34 0.00 4.55
1294 1352 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
1295 1353 0.455005 CTACTCCCTCCGTTCGGAAC 59.545 60.000 14.79 10.83 33.41 3.62
1296 1354 0.038744 TACTCCCTCCGTTCGGAACT 59.961 55.000 17.94 0.33 33.41 3.01
1297 1355 0.038744 ACTCCCTCCGTTCGGAACTA 59.961 55.000 17.94 6.05 33.41 2.24
1298 1356 0.455005 CTCCCTCCGTTCGGAACTAC 59.545 60.000 17.94 0.00 33.41 2.73
1299 1357 0.038744 TCCCTCCGTTCGGAACTACT 59.961 55.000 17.94 0.00 33.41 2.57
1300 1358 0.893447 CCCTCCGTTCGGAACTACTT 59.107 55.000 17.94 0.00 33.41 2.24
1301 1359 1.403780 CCCTCCGTTCGGAACTACTTG 60.404 57.143 17.94 2.92 33.41 3.16
1302 1360 1.271656 CCTCCGTTCGGAACTACTTGT 59.728 52.381 17.94 0.00 33.41 3.16
1303 1361 2.593257 CTCCGTTCGGAACTACTTGTC 58.407 52.381 17.94 0.00 33.41 3.18
1304 1362 1.955778 TCCGTTCGGAACTACTTGTCA 59.044 47.619 17.94 0.00 0.00 3.58
1305 1363 2.056577 CCGTTCGGAACTACTTGTCAC 58.943 52.381 17.94 0.00 0.00 3.67
1306 1364 1.712350 CGTTCGGAACTACTTGTCACG 59.288 52.381 17.94 0.00 0.00 4.35
1307 1365 2.602933 CGTTCGGAACTACTTGTCACGA 60.603 50.000 17.94 0.00 35.81 4.35
1308 1366 3.374745 GTTCGGAACTACTTGTCACGAA 58.625 45.455 13.49 0.00 41.17 3.85
1309 1367 3.713858 TCGGAACTACTTGTCACGAAA 57.286 42.857 0.00 0.00 35.08 3.46
1310 1368 4.044336 TCGGAACTACTTGTCACGAAAA 57.956 40.909 0.00 0.00 35.08 2.29
1311 1369 4.624015 TCGGAACTACTTGTCACGAAAAT 58.376 39.130 0.00 0.00 35.08 1.82
1312 1370 4.446385 TCGGAACTACTTGTCACGAAAATG 59.554 41.667 0.00 0.00 35.08 2.32
1313 1371 4.377022 CGGAACTACTTGTCACGAAAATGG 60.377 45.833 0.00 0.00 32.06 3.16
1314 1372 4.753107 GGAACTACTTGTCACGAAAATGGA 59.247 41.667 0.00 0.00 0.00 3.41
1315 1373 5.411669 GGAACTACTTGTCACGAAAATGGAT 59.588 40.000 0.00 0.00 0.00 3.41
1316 1374 5.862924 ACTACTTGTCACGAAAATGGATG 57.137 39.130 0.00 0.00 0.00 3.51
1317 1375 5.305585 ACTACTTGTCACGAAAATGGATGT 58.694 37.500 0.00 0.00 0.00 3.06
1318 1376 6.460781 ACTACTTGTCACGAAAATGGATGTA 58.539 36.000 0.00 0.00 0.00 2.29
1319 1377 7.103641 ACTACTTGTCACGAAAATGGATGTAT 58.896 34.615 0.00 0.00 0.00 2.29
1320 1378 6.422776 ACTTGTCACGAAAATGGATGTATC 57.577 37.500 0.00 0.00 0.00 2.24
1337 1395 8.295569 GGATGTATCCAGACGTATTTTAGTTC 57.704 38.462 6.03 0.00 46.38 3.01
1338 1396 8.142551 GGATGTATCCAGACGTATTTTAGTTCT 58.857 37.037 6.03 0.00 46.38 3.01
1341 1399 9.399797 TGTATCCAGACGTATTTTAGTTCTAGA 57.600 33.333 0.00 0.00 0.00 2.43
1345 1403 9.399797 TCCAGACGTATTTTAGTTCTAGATACA 57.600 33.333 0.00 0.00 0.00 2.29
1355 1413 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
1356 1414 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
1357 1415 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
1358 1416 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
1359 1417 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
1360 1418 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
1361 1419 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
1362 1420 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
1363 1421 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
1364 1422 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
1365 1423 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
1366 1424 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
1367 1425 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
1368 1426 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
1369 1427 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
1370 1428 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
1371 1429 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
1372 1430 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
1373 1431 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
1374 1432 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
1375 1433 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
1376 1434 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
1377 1435 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
1378 1436 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1379 1437 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1380 1438 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1381 1439 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1382 1440 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1383 1441 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1384 1442 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
1385 1443 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
1415 1473 7.733773 TTATTCAGATTCCTTCCTAGTGTGA 57.266 36.000 0.00 0.00 0.00 3.58
1478 1536 8.211629 GGTAGATGTCCTGGACAACTTTTATAT 58.788 37.037 34.86 17.17 45.96 0.86
1540 1598 2.360165 GCGATCATTTTCAGGCCTTGAT 59.640 45.455 15.32 15.32 35.27 2.57
1621 1679 6.879458 ACGGAGACTGTAATAAAGCTGAAAAT 59.121 34.615 0.00 0.00 0.00 1.82
1636 1694 8.635765 AAGCTGAAAATTATCTTTGTACTCCA 57.364 30.769 0.00 0.00 0.00 3.86
1637 1695 8.045176 AGCTGAAAATTATCTTTGTACTCCAC 57.955 34.615 0.00 0.00 0.00 4.02
1638 1696 7.885399 AGCTGAAAATTATCTTTGTACTCCACT 59.115 33.333 0.00 0.00 0.00 4.00
1639 1697 9.162764 GCTGAAAATTATCTTTGTACTCCACTA 57.837 33.333 0.00 0.00 0.00 2.74
1686 1744 2.857618 CATGCATGCACCAATTTTTGC 58.142 42.857 25.37 0.00 39.33 3.68
1687 1745 0.866427 TGCATGCACCAATTTTTGCG 59.134 45.000 18.46 0.00 41.96 4.85
1726 2059 1.675415 GCAGGCACCTTCTCTGAAGAG 60.675 57.143 8.69 0.58 43.36 2.85
2021 2357 0.912487 CCCCAGTAAGCACCACCCTA 60.912 60.000 0.00 0.00 0.00 3.53
2057 2393 1.070786 ACACCCACGCACGATCTTT 59.929 52.632 0.00 0.00 0.00 2.52
2066 2402 3.902465 CACGCACGATCTTTTTCTTCTTG 59.098 43.478 0.00 0.00 0.00 3.02
2092 2428 1.884926 CGGCGGGCTCTGATTCTTC 60.885 63.158 0.00 0.00 0.00 2.87
2093 2429 1.524849 GGCGGGCTCTGATTCTTCC 60.525 63.158 0.00 0.00 0.00 3.46
2104 2440 0.106967 GATTCTTCCCTCCCTGTGGC 60.107 60.000 0.00 0.00 0.00 5.01
2236 2588 1.071299 TTCACGTGCAGCTCCATGT 59.929 52.632 11.67 0.00 35.42 3.21
2437 2789 2.820330 CCGCTCTTCTTCTTCTGATCC 58.180 52.381 0.00 0.00 0.00 3.36
2450 2802 2.031768 GATCCATGCCTCCGCTCC 59.968 66.667 0.00 0.00 35.36 4.70
2534 2886 2.697751 CAGGTTACATGAGAGGGAGGAG 59.302 54.545 0.00 0.00 0.00 3.69
2553 2905 4.473559 AGGAGCTCTAGACTCTAGAGTGTT 59.526 45.833 31.02 21.72 42.66 3.32
2581 2933 9.515020 TCATCTTTACATGTTTTTGTTCTTCAC 57.485 29.630 2.30 0.00 0.00 3.18
2586 2938 6.949578 ACATGTTTTTGTTCTTCACAAGTG 57.050 33.333 0.00 0.00 46.37 3.16
2786 3142 0.603975 ACAAGAACTGAAGCGAGCCC 60.604 55.000 0.00 0.00 0.00 5.19
2843 3202 1.263217 GTCGGGCACAACTTGTTAGTG 59.737 52.381 0.00 9.84 34.01 2.74
2882 3242 2.688446 CGTGCTAAGGTCTCATAGGACA 59.312 50.000 5.52 0.00 39.58 4.02
2886 3246 3.133003 GCTAAGGTCTCATAGGACAAGCA 59.867 47.826 0.00 0.00 37.64 3.91
2889 3249 3.110705 AGGTCTCATAGGACAAGCACAT 58.889 45.455 0.00 0.00 37.91 3.21
2902 3262 3.443329 ACAAGCACATCAGAACAACAACA 59.557 39.130 0.00 0.00 0.00 3.33
2972 3333 4.748102 ACACGAACATAGACGAACAACAAT 59.252 37.500 0.00 0.00 0.00 2.71
3026 3387 2.448582 GGGGACACACCTCCACACA 61.449 63.158 0.00 0.00 33.33 3.72
3027 3388 1.227853 GGGACACACCTCCACACAC 60.228 63.158 0.00 0.00 38.98 3.82
3028 3389 1.524961 GGACACACCTCCACACACA 59.475 57.895 0.00 0.00 35.41 3.72
3045 3406 0.398696 ACACCCACCAACGATGCTAA 59.601 50.000 0.00 0.00 0.00 3.09
3062 3423 5.307926 TGCTAAACGCATCATCAAAATGA 57.692 34.783 0.00 0.00 45.47 2.57
3075 3436 1.279025 AAAATGAGGGCTAGGCGGGA 61.279 55.000 10.58 0.00 0.00 5.14
3077 3438 1.279025 AATGAGGGCTAGGCGGGAAA 61.279 55.000 10.58 0.00 0.00 3.13
3133 3513 2.375174 TGAGCAGGACACAAACCCTAAT 59.625 45.455 0.00 0.00 0.00 1.73
3151 3531 8.631480 ACCCTAATAAAACTCAAAAGAACGAT 57.369 30.769 0.00 0.00 0.00 3.73
3170 3550 1.344065 TTAACAACGGAGCCCTCTCA 58.656 50.000 0.00 0.00 41.13 3.27
3226 3606 1.592400 CTACGGCCACTGGAGACGAA 61.592 60.000 2.24 0.00 0.00 3.85
3240 3620 2.967397 CGAAGTGGACCTGCGGTA 59.033 61.111 0.09 0.00 38.68 4.02
3266 3646 0.530870 GCGAGAGGCATGAACCCTAC 60.531 60.000 0.00 0.00 42.87 3.18
3273 3653 3.431415 AGGCATGAACCCTACCTTTTTC 58.569 45.455 0.00 0.00 0.00 2.29
3278 3658 4.799715 TGAACCCTACCTTTTTCTGGAA 57.200 40.909 0.00 0.00 0.00 3.53
3279 3659 4.725490 TGAACCCTACCTTTTTCTGGAAG 58.275 43.478 0.00 0.00 0.00 3.46
3293 4135 3.855853 GAAGAGGAGGAGGCGGCC 61.856 72.222 12.11 12.11 0.00 6.13
3306 4148 4.873129 CGGCCGTGTGAGGGATCG 62.873 72.222 19.50 0.00 0.00 3.69
3307 4149 3.458163 GGCCGTGTGAGGGATCGA 61.458 66.667 0.00 0.00 0.00 3.59
3308 4150 2.797278 GGCCGTGTGAGGGATCGAT 61.797 63.158 0.00 0.00 0.00 3.59
3309 4151 1.144057 GCCGTGTGAGGGATCGATT 59.856 57.895 0.00 0.00 0.00 3.34
3310 4152 1.154205 GCCGTGTGAGGGATCGATTG 61.154 60.000 0.00 0.00 0.00 2.67
3311 4153 1.154205 CCGTGTGAGGGATCGATTGC 61.154 60.000 0.00 0.00 0.00 3.56
3313 4155 1.293924 GTGTGAGGGATCGATTGCAG 58.706 55.000 0.00 0.00 0.00 4.41
3314 4156 1.134699 GTGTGAGGGATCGATTGCAGA 60.135 52.381 0.00 0.00 0.00 4.26
3316 4158 1.137872 GTGAGGGATCGATTGCAGACT 59.862 52.381 0.00 0.00 0.00 3.24
3318 4160 0.387202 AGGGATCGATTGCAGACTCG 59.613 55.000 0.00 8.58 36.25 4.18
3319 4161 0.103208 GGGATCGATTGCAGACTCGT 59.897 55.000 0.00 3.83 36.33 4.18
3320 4162 1.203928 GGATCGATTGCAGACTCGTG 58.796 55.000 0.00 0.00 36.33 4.35
3332 5124 2.088423 AGACTCGTGGTTGCACAAAAA 58.912 42.857 0.00 0.00 0.00 1.94
3385 5499 0.605319 TGCCCGACTTTAGCCAACTG 60.605 55.000 0.00 0.00 0.00 3.16
3395 5509 4.825634 ACTTTAGCCAACTGAAACCCTTAC 59.174 41.667 0.00 0.00 0.00 2.34
3410 5524 3.906218 ACCCTTACGGTTTAGAAGGTTCT 59.094 43.478 6.66 0.00 45.36 3.01
3414 5528 7.400052 ACCCTTACGGTTTAGAAGGTTCTAATA 59.600 37.037 11.97 1.10 45.36 0.98
3467 5581 1.545706 AAGGAGGTCCAAGACGCTCC 61.546 60.000 17.58 17.58 43.63 4.70
3469 5583 3.991536 GAGGTCCAAGACGCTCCGC 62.992 68.421 0.00 0.00 32.65 5.54
3480 5594 2.817834 GCTCCGCGCCACATACAA 60.818 61.111 0.00 0.00 0.00 2.41
3485 5599 1.225637 CGCGCCACATACAACGAAC 60.226 57.895 0.00 0.00 0.00 3.95
3499 5613 5.670792 ACAACGAACAATATAGACCCTCA 57.329 39.130 0.00 0.00 0.00 3.86
3543 5657 1.279539 CACACACGCGATGCAAACT 59.720 52.632 15.93 0.00 0.00 2.66
3547 5661 0.041312 ACACGCGATGCAAACTCAAC 60.041 50.000 15.93 0.00 0.00 3.18
3552 5666 0.110238 CGATGCAAACTCAACACGGG 60.110 55.000 0.00 0.00 0.00 5.28
3558 5672 1.106944 AAACTCAACACGGGCCTTGG 61.107 55.000 15.13 0.00 0.00 3.61
3569 5683 0.899717 GGGCCTTGGCTCAACAATCA 60.900 55.000 11.71 0.00 0.00 2.57
3572 5686 2.611224 GGCCTTGGCTCAACAATCAAAG 60.611 50.000 11.71 0.00 0.00 2.77
3578 5692 2.223782 GGCTCAACAATCAAAGCACACA 60.224 45.455 0.00 0.00 36.47 3.72
3601 5715 2.599848 CGCACAAAGAAGGAAAGTGTCG 60.600 50.000 0.00 0.00 32.99 4.35
3609 5723 5.152623 AGAAGGAAAGTGTCGATCAATCA 57.847 39.130 0.00 0.00 0.00 2.57
3629 5743 2.038438 ATGGCCATGGCTCCCCTA 60.038 61.111 34.70 15.24 41.60 3.53
3640 5754 1.908483 CTCCCCTACTTGAGCACCC 59.092 63.158 0.00 0.00 0.00 4.61
3641 5755 0.618968 CTCCCCTACTTGAGCACCCT 60.619 60.000 0.00 0.00 0.00 4.34
3642 5756 0.714180 TCCCCTACTTGAGCACCCTA 59.286 55.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.507886 AGAGAGAGAGACTCCAATCGGA 59.492 50.000 0.00 0.00 45.96 4.55
10 11 2.878406 GAGAGAGAGAGACTCCAATCGG 59.122 54.545 0.00 0.00 45.96 4.18
11 12 3.808728 AGAGAGAGAGAGACTCCAATCG 58.191 50.000 0.00 0.00 45.96 3.34
12 13 5.041191 AGAGAGAGAGAGAGACTCCAATC 57.959 47.826 0.00 0.00 45.96 2.67
13 14 4.723789 AGAGAGAGAGAGAGAGACTCCAAT 59.276 45.833 0.00 0.00 45.96 3.16
14 15 4.104086 AGAGAGAGAGAGAGAGACTCCAA 58.896 47.826 0.00 0.00 45.96 3.53
15 16 3.706594 GAGAGAGAGAGAGAGAGACTCCA 59.293 52.174 0.00 0.00 45.96 3.86
16 17 3.964031 AGAGAGAGAGAGAGAGAGACTCC 59.036 52.174 0.00 0.00 45.96 3.85
17 18 4.892934 AGAGAGAGAGAGAGAGAGAGACTC 59.107 50.000 0.00 0.00 45.22 3.36
18 19 4.877773 AGAGAGAGAGAGAGAGAGAGACT 58.122 47.826 0.00 0.00 0.00 3.24
19 20 4.892934 AGAGAGAGAGAGAGAGAGAGAGAC 59.107 50.000 0.00 0.00 0.00 3.36
20 21 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
21 22 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
22 23 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
23 24 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
24 25 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
25 26 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
26 27 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
27 28 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
28 29 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
29 30 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
30 31 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
31 32 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
84 87 0.391263 ACGGCCGTCAGAAGAAATCC 60.391 55.000 28.70 0.00 0.00 3.01
97 100 3.564027 GGAAATCAGCGACGGCCG 61.564 66.667 26.86 26.86 41.24 6.13
130 133 4.092091 GGATCATGTCGTTGAGAACACTTC 59.908 45.833 0.00 0.00 0.00 3.01
131 134 3.997021 GGATCATGTCGTTGAGAACACTT 59.003 43.478 0.00 0.00 0.00 3.16
141 144 3.895232 ACTAAGCTGGATCATGTCGTT 57.105 42.857 0.00 0.00 0.00 3.85
250 257 0.756903 AACGGTGGCAGACAAGTACT 59.243 50.000 0.00 0.00 0.00 2.73
251 258 1.263217 CAAACGGTGGCAGACAAGTAC 59.737 52.381 0.00 0.00 0.00 2.73
252 259 1.139256 TCAAACGGTGGCAGACAAGTA 59.861 47.619 0.00 0.00 0.00 2.24
253 260 0.107410 TCAAACGGTGGCAGACAAGT 60.107 50.000 0.00 0.00 0.00 3.16
254 261 1.238439 ATCAAACGGTGGCAGACAAG 58.762 50.000 0.00 0.00 0.00 3.16
282 289 5.048083 TCGGTTTCCTTCATTCATTCAAAGG 60.048 40.000 0.00 0.00 39.73 3.11
298 305 7.985476 TCTAATGAAAAAGATGATCGGTTTCC 58.015 34.615 16.13 0.00 0.00 3.13
334 341 2.493278 CCGAACGGAGGGAGTAAGTTTA 59.507 50.000 7.53 0.00 37.50 2.01
340 347 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
341 348 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
342 349 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
343 350 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
344 351 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
345 352 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
346 353 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
347 354 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
348 355 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
349 356 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
350 357 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
351 358 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
352 359 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
353 360 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
354 361 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
355 362 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
356 363 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
357 364 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
358 365 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
359 366 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
360 367 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
361 368 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
362 369 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
363 370 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
364 371 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
365 372 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
366 373 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
367 374 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
368 375 7.887381 ACTAGTTCTAGATACATCCATTTCCG 58.113 38.462 12.97 0.00 0.00 4.30
369 376 9.699703 GAACTAGTTCTAGATACATCCATTTCC 57.300 37.037 25.30 0.00 36.69 3.13
386 393 9.699703 GGAAATGGATGTATCTAGAACTAGTTC 57.300 37.037 25.24 25.24 39.78 3.01
387 394 8.361139 CGGAAATGGATGTATCTAGAACTAGTT 58.639 37.037 8.13 8.13 34.84 2.24
388 395 7.724506 TCGGAAATGGATGTATCTAGAACTAGT 59.275 37.037 0.00 0.00 34.84 2.57
389 396 8.112016 TCGGAAATGGATGTATCTAGAACTAG 57.888 38.462 0.00 2.77 34.56 2.57
390 397 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
391 398 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
392 399 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
393 400 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
394 401 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
395 402 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
396 403 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
397 404 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
398 405 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
399 406 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
400 407 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
401 408 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
402 409 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
403 410 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
404 411 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
405 412 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
406 413 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
407 414 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
408 415 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
409 416 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
410 417 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
411 418 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
412 419 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
413 420 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
414 421 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
415 422 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
416 423 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
417 424 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
418 425 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
419 426 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
420 427 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
421 428 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
422 429 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
423 430 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
424 431 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
425 432 1.479323 CAAATACTCCCTCCGTTCGGA 59.521 52.381 13.34 13.34 0.00 4.55
426 433 1.206371 ACAAATACTCCCTCCGTTCGG 59.794 52.381 4.74 4.74 0.00 4.30
427 434 2.667473 ACAAATACTCCCTCCGTTCG 57.333 50.000 0.00 0.00 0.00 3.95
428 435 6.997239 AATTAACAAATACTCCCTCCGTTC 57.003 37.500 0.00 0.00 0.00 3.95
429 436 6.717997 ACAAATTAACAAATACTCCCTCCGTT 59.282 34.615 0.00 0.00 0.00 4.44
430 437 6.243148 ACAAATTAACAAATACTCCCTCCGT 58.757 36.000 0.00 0.00 0.00 4.69
431 438 6.753107 ACAAATTAACAAATACTCCCTCCG 57.247 37.500 0.00 0.00 0.00 4.63
432 439 8.683615 CCTTACAAATTAACAAATACTCCCTCC 58.316 37.037 0.00 0.00 0.00 4.30
433 440 8.188799 GCCTTACAAATTAACAAATACTCCCTC 58.811 37.037 0.00 0.00 0.00 4.30
434 441 7.893833 AGCCTTACAAATTAACAAATACTCCCT 59.106 33.333 0.00 0.00 0.00 4.20
435 442 8.063200 AGCCTTACAAATTAACAAATACTCCC 57.937 34.615 0.00 0.00 0.00 4.30
436 443 9.923143 AAAGCCTTACAAATTAACAAATACTCC 57.077 29.630 0.00 0.00 0.00 3.85
486 493 1.542492 ATCCTTGGCAAGAGCACAAG 58.458 50.000 28.18 9.75 43.07 3.16
620 627 7.176515 CCGAATTATTCATTGAATATCCACCCA 59.823 37.037 17.55 4.10 34.95 4.51
623 630 7.592938 TGCCGAATTATTCATTGAATATCCAC 58.407 34.615 17.55 8.90 34.95 4.02
661 668 4.439016 CGAAGTTCACCCTTTTCGGAAAAA 60.439 41.667 15.99 0.00 38.87 1.94
666 673 1.589803 ACGAAGTTCACCCTTTTCGG 58.410 50.000 3.32 0.00 44.74 4.30
723 733 2.369394 GGATGATTGGTGAACCTGGAC 58.631 52.381 0.00 0.00 36.82 4.02
725 735 1.285962 AGGGATGATTGGTGAACCTGG 59.714 52.381 0.37 0.00 36.82 4.45
755 765 2.351418 TGATAATCGGTCGCTGCAAAAG 59.649 45.455 0.00 0.00 0.00 2.27
759 769 2.238942 AATGATAATCGGTCGCTGCA 57.761 45.000 0.00 0.00 0.00 4.41
760 770 3.423645 GCTAAATGATAATCGGTCGCTGC 60.424 47.826 0.00 0.00 0.00 5.25
761 771 3.740832 TGCTAAATGATAATCGGTCGCTG 59.259 43.478 0.00 0.00 0.00 5.18
762 772 3.990092 TGCTAAATGATAATCGGTCGCT 58.010 40.909 0.00 0.00 0.00 4.93
763 773 3.423645 GCTGCTAAATGATAATCGGTCGC 60.424 47.826 0.00 0.00 0.00 5.19
767 777 5.441700 CGTAGCTGCTAAATGATAATCGG 57.558 43.478 11.57 0.00 0.00 4.18
790 801 4.975788 ACTAGCGATATAACTGCGAGATG 58.024 43.478 9.98 0.00 35.64 2.90
808 822 7.973388 TGTTTGAAAACATGGAGTGAAAACTAG 59.027 33.333 4.52 0.00 43.45 2.57
897 923 1.382522 AATCGCTGTCCAATCGCAAT 58.617 45.000 0.00 0.00 0.00 3.56
989 1017 1.665916 CAGCAGGAGACGTGTGGTG 60.666 63.158 0.00 0.00 33.74 4.17
990 1018 1.399744 TTCAGCAGGAGACGTGTGGT 61.400 55.000 0.00 0.00 0.00 4.16
991 1019 0.249868 TTTCAGCAGGAGACGTGTGG 60.250 55.000 0.00 0.00 0.00 4.17
992 1020 0.861837 GTTTCAGCAGGAGACGTGTG 59.138 55.000 0.00 0.00 0.00 3.82
993 1021 0.464036 TGTTTCAGCAGGAGACGTGT 59.536 50.000 0.00 0.00 33.44 4.49
1012 1040 7.148853 GCGTATTCTCGACATAAATAAACGGAT 60.149 37.037 0.00 0.00 0.00 4.18
1015 1043 6.859090 TGCGTATTCTCGACATAAATAAACG 58.141 36.000 0.00 0.00 0.00 3.60
1017 1045 7.997107 ACTGCGTATTCTCGACATAAATAAA 57.003 32.000 0.00 0.00 0.00 1.40
1021 1049 4.497966 CGAACTGCGTATTCTCGACATAAA 59.502 41.667 0.00 0.00 34.64 1.40
1046 1074 5.473931 CATCAGTAGTTCAGCACTGTACTT 58.526 41.667 14.04 0.00 42.28 2.24
1069 1097 5.314923 TGCCAAAATTCAGAGATGTAAGC 57.685 39.130 0.00 0.00 0.00 3.09
1071 1099 5.183713 CACCTGCCAAAATTCAGAGATGTAA 59.816 40.000 0.00 0.00 32.26 2.41
1124 1171 1.043116 ATCTTCCCAGCGTCCGATCA 61.043 55.000 0.00 0.00 0.00 2.92
1126 1173 1.330655 ACATCTTCCCAGCGTCCGAT 61.331 55.000 0.00 0.00 0.00 4.18
1127 1174 1.541310 AACATCTTCCCAGCGTCCGA 61.541 55.000 0.00 0.00 0.00 4.55
1130 1177 1.079503 GTCAACATCTTCCCAGCGTC 58.920 55.000 0.00 0.00 0.00 5.19
1131 1178 0.321653 GGTCAACATCTTCCCAGCGT 60.322 55.000 0.00 0.00 0.00 5.07
1140 1197 2.369860 TGCAGTCTTCTGGTCAACATCT 59.630 45.455 0.00 0.00 41.57 2.90
1165 1222 3.326646 AAGAGCGCTGCTGCATCCT 62.327 57.895 18.48 0.00 39.88 3.24
1179 1236 0.800300 GAGGAACGCGAGCAGAAGAG 60.800 60.000 15.93 0.00 0.00 2.85
1191 1248 3.277211 TTGGCGACGAGGAGGAACG 62.277 63.158 0.00 0.00 0.00 3.95
1221 1278 1.071239 CGCTAGACAATGCGCATGTAC 60.071 52.381 26.09 17.15 45.50 2.90
1222 1279 1.208259 CGCTAGACAATGCGCATGTA 58.792 50.000 26.09 12.19 45.50 2.29
1223 1280 2.009108 CGCTAGACAATGCGCATGT 58.991 52.632 26.09 22.67 45.50 3.21
1230 1287 3.155998 CGAAAGCAAACGCTAGACAATG 58.844 45.455 0.00 0.00 39.40 2.82
1235 1292 2.159181 GCCGAAAGCAAACGCTAGA 58.841 52.632 0.00 0.00 39.40 2.43
1236 1293 4.745549 GCCGAAAGCAAACGCTAG 57.254 55.556 0.00 0.00 39.40 3.42
1253 1311 2.432628 GAGCGACCACCGAACCAG 60.433 66.667 0.00 0.00 41.76 4.00
1263 1321 0.525882 GGAGTAGAAAGCGAGCGACC 60.526 60.000 0.00 0.00 0.00 4.79
1281 1339 0.893447 AAGTAGTTCCGAACGGAGGG 59.107 55.000 15.34 0.00 46.06 4.30
1282 1340 1.271656 ACAAGTAGTTCCGAACGGAGG 59.728 52.381 15.34 4.52 46.06 4.30
1283 1341 2.030540 TGACAAGTAGTTCCGAACGGAG 60.031 50.000 15.34 5.60 46.06 4.63
1284 1342 1.955778 TGACAAGTAGTTCCGAACGGA 59.044 47.619 12.04 12.04 43.52 4.69
1285 1343 2.056577 GTGACAAGTAGTTCCGAACGG 58.943 52.381 6.94 6.94 36.23 4.44
1286 1344 1.712350 CGTGACAAGTAGTTCCGAACG 59.288 52.381 5.62 0.00 36.23 3.95
1287 1345 3.004024 TCGTGACAAGTAGTTCCGAAC 57.996 47.619 2.81 2.81 32.21 3.95
1288 1346 3.713858 TTCGTGACAAGTAGTTCCGAA 57.286 42.857 0.00 0.00 39.03 4.30
1289 1347 3.713858 TTTCGTGACAAGTAGTTCCGA 57.286 42.857 0.00 0.00 32.95 4.55
1290 1348 4.377022 CCATTTTCGTGACAAGTAGTTCCG 60.377 45.833 0.00 0.00 0.00 4.30
1291 1349 4.753107 TCCATTTTCGTGACAAGTAGTTCC 59.247 41.667 0.00 0.00 0.00 3.62
1292 1350 5.917541 TCCATTTTCGTGACAAGTAGTTC 57.082 39.130 0.00 0.00 0.00 3.01
1293 1351 5.763204 ACATCCATTTTCGTGACAAGTAGTT 59.237 36.000 0.00 0.00 0.00 2.24
1294 1352 5.305585 ACATCCATTTTCGTGACAAGTAGT 58.694 37.500 0.00 0.00 0.00 2.73
1295 1353 5.862924 ACATCCATTTTCGTGACAAGTAG 57.137 39.130 0.00 0.00 0.00 2.57
1296 1354 6.537301 GGATACATCCATTTTCGTGACAAGTA 59.463 38.462 3.26 0.00 46.38 2.24
1297 1355 5.354234 GGATACATCCATTTTCGTGACAAGT 59.646 40.000 3.26 0.00 46.38 3.16
1298 1356 5.810525 GGATACATCCATTTTCGTGACAAG 58.189 41.667 3.26 0.00 46.38 3.16
1299 1357 5.811399 GGATACATCCATTTTCGTGACAA 57.189 39.130 3.26 0.00 46.38 3.18
1319 1377 9.399797 TGTATCTAGAACTAAAATACGTCTGGA 57.600 33.333 0.00 0.00 0.00 3.86
1329 1387 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
1330 1388 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
1331 1389 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
1332 1390 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
1333 1391 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
1334 1392 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
1335 1393 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
1336 1394 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
1337 1395 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
1338 1396 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
1339 1397 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
1340 1398 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
1341 1399 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
1342 1400 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
1343 1401 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
1344 1402 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
1345 1403 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
1346 1404 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
1347 1405 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
1348 1406 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
1349 1407 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
1350 1408 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
1351 1409 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
1352 1410 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
1353 1411 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
1354 1412 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
1355 1413 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
1356 1414 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1357 1415 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1358 1416 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1359 1417 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1360 1418 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1361 1419 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1362 1420 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1363 1421 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1364 1422 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
1365 1423 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
1366 1424 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
1367 1425 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
1368 1426 0.893447 AAAGTACTCCCTCCGTTCGG 59.107 55.000 4.74 4.74 0.00 4.30
1369 1427 1.135170 GGAAAGTACTCCCTCCGTTCG 60.135 57.143 0.00 0.00 0.00 3.95
1370 1428 1.897802 TGGAAAGTACTCCCTCCGTTC 59.102 52.381 13.46 4.69 34.22 3.95
1371 1429 2.019807 TGGAAAGTACTCCCTCCGTT 57.980 50.000 13.46 0.00 34.22 4.44
1372 1430 2.249309 ATGGAAAGTACTCCCTCCGT 57.751 50.000 13.46 10.37 34.22 4.69
1373 1431 4.957684 ATAATGGAAAGTACTCCCTCCG 57.042 45.455 13.46 0.00 34.22 4.63
1374 1432 6.099845 TCTGAATAATGGAAAGTACTCCCTCC 59.900 42.308 13.46 11.91 34.22 4.30
1375 1433 7.125792 TCTGAATAATGGAAAGTACTCCCTC 57.874 40.000 13.46 4.06 34.22 4.30
1376 1434 7.698163 ATCTGAATAATGGAAAGTACTCCCT 57.302 36.000 13.46 0.00 34.22 4.20
1377 1435 7.445707 GGAATCTGAATAATGGAAAGTACTCCC 59.554 40.741 0.00 1.23 34.22 4.30
1378 1436 8.214364 AGGAATCTGAATAATGGAAAGTACTCC 58.786 37.037 0.00 0.00 35.88 3.85
1379 1437 9.620259 AAGGAATCTGAATAATGGAAAGTACTC 57.380 33.333 0.00 0.00 0.00 2.59
1380 1438 9.620259 GAAGGAATCTGAATAATGGAAAGTACT 57.380 33.333 0.00 0.00 0.00 2.73
1381 1439 8.841300 GGAAGGAATCTGAATAATGGAAAGTAC 58.159 37.037 0.00 0.00 0.00 2.73
1382 1440 8.781951 AGGAAGGAATCTGAATAATGGAAAGTA 58.218 33.333 0.00 0.00 0.00 2.24
1383 1441 7.646884 AGGAAGGAATCTGAATAATGGAAAGT 58.353 34.615 0.00 0.00 0.00 2.66
1384 1442 9.282569 CTAGGAAGGAATCTGAATAATGGAAAG 57.717 37.037 0.00 0.00 0.00 2.62
1385 1443 8.781951 ACTAGGAAGGAATCTGAATAATGGAAA 58.218 33.333 0.00 0.00 0.00 3.13
1415 1473 1.135527 CATGGCGATGCATTTCAAGGT 59.864 47.619 0.00 0.00 0.00 3.50
1496 1554 1.444895 CAACCGCAAGCCAGAATGC 60.445 57.895 0.00 0.00 39.17 3.56
1540 1598 2.323999 ATGGCCATTTTCACAAGGGA 57.676 45.000 14.09 0.00 0.00 4.20
1634 1692 6.592798 TTTCGTTCACTTGTTAAGTAGTGG 57.407 37.500 13.94 2.79 40.46 4.00
1639 1697 9.878599 CTGAAATATTTCGTTCACTTGTTAAGT 57.121 29.630 20.45 0.00 40.20 2.24
1640 1698 8.840867 GCTGAAATATTTCGTTCACTTGTTAAG 58.159 33.333 20.45 10.19 40.01 1.85
1641 1699 8.346300 TGCTGAAATATTTCGTTCACTTGTTAA 58.654 29.630 20.45 0.88 40.01 2.01
1642 1700 7.866729 TGCTGAAATATTTCGTTCACTTGTTA 58.133 30.769 20.45 1.06 40.01 2.41
1643 1701 6.734137 TGCTGAAATATTTCGTTCACTTGTT 58.266 32.000 20.45 0.00 40.01 2.83
1646 1704 5.801947 GCATGCTGAAATATTTCGTTCACTT 59.198 36.000 20.45 6.17 40.01 3.16
1684 1742 0.734309 ATCGCAATGCAGAAATCGCA 59.266 45.000 5.91 0.00 44.94 5.10
1685 1743 1.831343 AATCGCAATGCAGAAATCGC 58.169 45.000 5.91 0.00 0.00 4.58
1686 1744 2.035176 GCAAATCGCAATGCAGAAATCG 60.035 45.455 5.91 0.00 42.12 3.34
1687 1745 3.564408 GCAAATCGCAATGCAGAAATC 57.436 42.857 5.91 0.00 42.12 2.17
1726 2059 1.748500 GCTCCCCTCAGCTTCTTGC 60.749 63.158 0.00 0.00 43.29 4.01
1738 2071 4.475135 GACCGCCTCTTGCTCCCC 62.475 72.222 0.00 0.00 38.05 4.81
2021 2357 3.369388 GGGAGGGGAGGGAGGAGT 61.369 72.222 0.00 0.00 0.00 3.85
2057 2393 1.679153 GCCGGGAACAACAAGAAGAAA 59.321 47.619 2.18 0.00 0.00 2.52
2092 2428 3.086600 GAGGAGCCACAGGGAGGG 61.087 72.222 0.00 0.00 35.59 4.30
2093 2429 3.465403 CGAGGAGCCACAGGGAGG 61.465 72.222 0.00 0.00 35.59 4.30
2104 2440 2.097038 CGAGCCTGCAAACGAGGAG 61.097 63.158 0.00 0.00 31.48 3.69
2153 2489 2.903798 TGCATGCACATCGAAGATACA 58.096 42.857 18.46 0.00 45.12 2.29
2362 2714 4.758251 CCGGCCATGACGCTGTCA 62.758 66.667 2.24 12.53 46.90 3.58
2437 2789 1.960040 TACAGTGGAGCGGAGGCATG 61.960 60.000 0.00 0.00 43.41 4.06
2450 2802 5.185454 TGCCATGGAGTAGAATTTACAGTG 58.815 41.667 18.40 0.00 0.00 3.66
2534 2886 7.878127 AGATGATAACACTCTAGAGTCTAGAGC 59.122 40.741 39.60 28.04 43.57 4.09
2586 2938 2.851263 TGTACACCCAGTGATGGTTC 57.149 50.000 0.96 0.00 36.96 3.62
2595 2947 1.404181 CGACCTGACATGTACACCCAG 60.404 57.143 0.00 5.88 0.00 4.45
2701 3053 9.897744 CATTATTTCTGATGTTTGTTGTACTGT 57.102 29.630 0.00 0.00 0.00 3.55
2843 3202 0.728466 CGACGACTTTCCGACTGTCC 60.728 60.000 1.55 0.00 0.00 4.02
2882 3242 3.489738 GCTGTTGTTGTTCTGATGTGCTT 60.490 43.478 0.00 0.00 0.00 3.91
2886 3246 1.603802 CGGCTGTTGTTGTTCTGATGT 59.396 47.619 0.00 0.00 0.00 3.06
2889 3249 1.444119 GGCGGCTGTTGTTGTTCTGA 61.444 55.000 0.00 0.00 0.00 3.27
2902 3262 1.583054 GTTATTCTTCATCGGCGGCT 58.417 50.000 7.21 0.00 0.00 5.52
2972 3333 1.134401 GGTGGATTTGCTCGGATCTGA 60.134 52.381 3.71 3.71 0.00 3.27
3010 3371 0.814010 GTGTGTGTGGAGGTGTGTCC 60.814 60.000 0.00 0.00 37.10 4.02
3026 3387 0.398696 TTAGCATCGTTGGTGGGTGT 59.601 50.000 8.40 0.00 34.79 4.16
3027 3388 1.199097 GTTTAGCATCGTTGGTGGGTG 59.801 52.381 8.40 0.00 34.79 4.61
3028 3389 1.530323 GTTTAGCATCGTTGGTGGGT 58.470 50.000 8.40 0.00 34.79 4.51
3045 3406 2.159198 GCCCTCATTTTGATGATGCGTT 60.159 45.455 0.00 0.00 0.00 4.84
3054 3415 0.107214 CCGCCTAGCCCTCATTTTGA 60.107 55.000 0.00 0.00 0.00 2.69
3057 3418 1.279025 TTCCCGCCTAGCCCTCATTT 61.279 55.000 0.00 0.00 0.00 2.32
3062 3423 1.498176 AAGTTTTCCCGCCTAGCCCT 61.498 55.000 0.00 0.00 0.00 5.19
3075 3436 8.713971 ACTCCCTGAAAATGGAATAAAAGTTTT 58.286 29.630 6.06 6.06 0.00 2.43
3077 3438 7.730332 AGACTCCCTGAAAATGGAATAAAAGTT 59.270 33.333 0.00 0.00 0.00 2.66
3133 3513 9.212687 CGTTGTTAATCGTTCTTTTGAGTTTTA 57.787 29.630 0.00 0.00 0.00 1.52
3151 3531 1.001633 GTGAGAGGGCTCCGTTGTTAA 59.998 52.381 0.00 0.00 40.55 2.01
3176 3556 1.377202 GCGGTGGATCTTGGCAAGA 60.377 57.895 30.29 30.29 42.69 3.02
3210 3590 2.125912 CTTCGTCTCCAGTGGCCG 60.126 66.667 3.51 6.83 0.00 6.13
3257 3637 4.414182 TCTTCCAGAAAAAGGTAGGGTTCA 59.586 41.667 0.00 0.00 0.00 3.18
3266 3646 3.308046 CCTCCTCCTCTTCCAGAAAAAGG 60.308 52.174 3.21 3.21 0.00 3.11
3273 3653 2.430610 CCGCCTCCTCCTCTTCCAG 61.431 68.421 0.00 0.00 0.00 3.86
3293 4135 0.460109 TGCAATCGATCCCTCACACG 60.460 55.000 0.00 0.00 0.00 4.49
3295 4137 1.134699 GTCTGCAATCGATCCCTCACA 60.135 52.381 0.00 0.00 0.00 3.58
3297 4139 1.410517 GAGTCTGCAATCGATCCCTCA 59.589 52.381 0.00 0.00 0.00 3.86
3298 4140 1.601663 CGAGTCTGCAATCGATCCCTC 60.602 57.143 9.38 0.00 41.40 4.30
3300 4142 0.103208 ACGAGTCTGCAATCGATCCC 59.897 55.000 19.00 0.00 41.40 3.85
3301 4143 1.203928 CACGAGTCTGCAATCGATCC 58.796 55.000 19.00 0.00 41.40 3.36
3304 4146 0.317160 AACCACGAGTCTGCAATCGA 59.683 50.000 19.00 0.00 41.40 3.59
3305 4147 0.439985 CAACCACGAGTCTGCAATCG 59.560 55.000 12.54 12.54 44.36 3.34
3306 4148 0.166814 GCAACCACGAGTCTGCAATC 59.833 55.000 0.00 0.00 34.56 2.67
3307 4149 0.534877 TGCAACCACGAGTCTGCAAT 60.535 50.000 1.78 0.00 38.60 3.56
3308 4150 1.153269 TGCAACCACGAGTCTGCAA 60.153 52.632 1.78 0.00 38.60 4.08
3309 4151 1.887242 GTGCAACCACGAGTCTGCA 60.887 57.895 0.17 0.17 38.96 4.41
3310 4152 1.436195 TTGTGCAACCACGAGTCTGC 61.436 55.000 0.00 0.42 45.04 4.26
3311 4153 1.013596 TTTGTGCAACCACGAGTCTG 58.986 50.000 0.00 0.00 45.04 3.51
3313 4155 2.553079 TTTTTGTGCAACCACGAGTC 57.447 45.000 0.00 0.00 45.04 3.36
3414 5528 7.995289 TGTTTTCGCTATTTCCATGAACATAT 58.005 30.769 0.00 0.00 0.00 1.78
3416 5530 6.266168 TGTTTTCGCTATTTCCATGAACAT 57.734 33.333 0.00 0.00 0.00 2.71
3417 5531 5.697473 TGTTTTCGCTATTTCCATGAACA 57.303 34.783 0.00 0.00 0.00 3.18
3418 5532 6.419413 TGTTTGTTTTCGCTATTTCCATGAAC 59.581 34.615 0.00 0.00 0.00 3.18
3419 5533 6.507900 TGTTTGTTTTCGCTATTTCCATGAA 58.492 32.000 0.00 0.00 0.00 2.57
3420 5534 6.078202 TGTTTGTTTTCGCTATTTCCATGA 57.922 33.333 0.00 0.00 0.00 3.07
3423 5537 4.261825 CCCTGTTTGTTTTCGCTATTTCCA 60.262 41.667 0.00 0.00 0.00 3.53
3424 5538 4.022676 TCCCTGTTTGTTTTCGCTATTTCC 60.023 41.667 0.00 0.00 0.00 3.13
3425 5539 5.116069 TCCCTGTTTGTTTTCGCTATTTC 57.884 39.130 0.00 0.00 0.00 2.17
3426 5540 5.523438 TTCCCTGTTTGTTTTCGCTATTT 57.477 34.783 0.00 0.00 0.00 1.40
3427 5541 5.508994 CCTTTCCCTGTTTGTTTTCGCTATT 60.509 40.000 0.00 0.00 0.00 1.73
3467 5581 1.225637 GTTCGTTGTATGTGGCGCG 60.226 57.895 0.00 0.00 0.00 6.86
3469 5583 2.892373 ATTGTTCGTTGTATGTGGCG 57.108 45.000 0.00 0.00 0.00 5.69
3476 5590 6.379133 AGTGAGGGTCTATATTGTTCGTTGTA 59.621 38.462 0.00 0.00 0.00 2.41
3480 5594 5.535406 CCTAGTGAGGGTCTATATTGTTCGT 59.465 44.000 0.00 0.00 39.48 3.85
3499 5613 0.036875 GTTGAGCAGTTGGCCCTAGT 59.963 55.000 0.00 0.00 46.50 2.57
3543 5657 3.842925 GAGCCAAGGCCCGTGTTGA 62.843 63.158 7.62 0.00 43.17 3.18
3547 5661 3.365265 GTTGAGCCAAGGCCCGTG 61.365 66.667 7.62 0.00 43.17 4.94
3552 5666 2.680577 CTTTGATTGTTGAGCCAAGGC 58.319 47.619 2.02 2.02 42.33 4.35
3558 5672 2.791004 GTGTGTGCTTTGATTGTTGAGC 59.209 45.455 0.00 0.00 35.74 4.26
3569 5683 0.179140 CTTTGTGCGGTGTGTGCTTT 60.179 50.000 0.00 0.00 0.00 3.51
3572 5686 0.592247 CTTCTTTGTGCGGTGTGTGC 60.592 55.000 0.00 0.00 0.00 4.57
3578 5692 1.676006 CACTTTCCTTCTTTGTGCGGT 59.324 47.619 0.00 0.00 0.00 5.68
3601 5715 2.094182 GCCATGGCCATGATGATTGATC 60.094 50.000 41.32 16.92 41.20 2.92
3609 5723 2.524559 GGGAGCCATGGCCATGAT 59.475 61.111 41.32 30.17 41.20 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.