Multiple sequence alignment - TraesCS2B01G180000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G180000 chr2B 100.000 4371 0 0 1 4371 154591475 154595845 0.000000e+00 8072.0
1 TraesCS2B01G180000 chr2B 93.590 468 17 2 3916 4371 154500274 154499808 0.000000e+00 686.0
2 TraesCS2B01G180000 chr2B 88.655 238 21 6 3913 4147 154490792 154490558 7.150000e-73 285.0
3 TraesCS2B01G180000 chr2B 88.235 238 24 4 3914 4149 154718426 154718661 9.260000e-72 281.0
4 TraesCS2B01G180000 chr2B 90.217 92 7 2 4281 4370 154588841 154588750 7.680000e-23 119.0
5 TraesCS2B01G180000 chr2B 94.366 71 0 1 4298 4368 154527125 154527059 5.980000e-19 106.0
6 TraesCS2B01G180000 chr2D 92.383 3256 179 32 497 3731 103126563 103129770 0.000000e+00 4575.0
7 TraesCS2B01G180000 chr2D 85.000 440 48 12 3750 4183 103129757 103130184 8.680000e-117 431.0
8 TraesCS2B01G180000 chr2D 87.160 257 24 6 3913 4164 106265375 106265627 2.570000e-72 283.0
9 TraesCS2B01G180000 chr2D 88.186 237 21 5 3915 4148 103147555 103147787 4.310000e-70 276.0
10 TraesCS2B01G180000 chr2D 86.869 99 7 3 4275 4371 103124113 103124019 5.980000e-19 106.0
11 TraesCS2B01G180000 chr2D 90.000 70 3 1 4299 4368 103065588 103065523 2.170000e-13 87.9
12 TraesCS2B01G180000 chr2D 86.765 68 9 0 2277 2344 11376226 11376293 4.690000e-10 76.8
13 TraesCS2B01G180000 chr2A 91.223 3190 189 56 538 3694 102129897 102133028 0.000000e+00 4255.0
14 TraesCS2B01G180000 chr2A 87.549 257 23 6 3913 4164 102679144 102679396 5.530000e-74 289.0
15 TraesCS2B01G180000 chr2A 84.564 298 34 8 3869 4163 102133117 102133405 7.150000e-73 285.0
16 TraesCS2B01G180000 chr2A 81.437 334 43 17 3841 4164 102043747 102043423 5.610000e-64 255.0
17 TraesCS2B01G180000 chr2A 75.974 308 38 17 100 374 102129159 102129463 4.590000e-25 126.0
18 TraesCS2B01G180000 chr2A 94.203 69 0 1 4300 4368 102052116 102052052 7.730000e-18 102.0
19 TraesCS2B01G180000 chr2A 93.846 65 0 1 4304 4368 102100915 102100855 1.290000e-15 95.3
20 TraesCS2B01G180000 chr2A 89.041 73 6 2 4275 4345 102125361 102125289 6.020000e-14 89.8
21 TraesCS2B01G180000 chr5A 88.186 237 24 4 3913 4147 10860737 10860503 3.330000e-71 279.0
22 TraesCS2B01G180000 chr5D 90.355 197 19 0 1299 1495 454309900 454310096 4.340000e-65 259.0
23 TraesCS2B01G180000 chr4B 82.692 156 27 0 2189 2344 338361447 338361602 5.890000e-29 139.0
24 TraesCS2B01G180000 chr7B 81.410 156 29 0 2189 2344 610506924 610506769 1.280000e-25 128.0
25 TraesCS2B01G180000 chr3B 81.410 156 29 0 2189 2344 438117314 438117469 1.280000e-25 128.0
26 TraesCS2B01G180000 chr1D 88.525 61 7 0 1840 1900 473661024 473660964 1.690000e-09 75.0
27 TraesCS2B01G180000 chr6A 94.595 37 2 0 2210 2246 234625453 234625489 1.700000e-04 58.4
28 TraesCS2B01G180000 chr1A 97.059 34 1 0 2213 2246 194526775 194526808 1.700000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G180000 chr2B 154591475 154595845 4370 False 8072.000000 8072 100.000000 1 4371 1 chr2B.!!$F1 4370
1 TraesCS2B01G180000 chr2D 103126563 103130184 3621 False 2503.000000 4575 88.691500 497 4183 2 chr2D.!!$F4 3686
2 TraesCS2B01G180000 chr2A 102129159 102133405 4246 False 1555.333333 4255 83.920333 100 4163 3 chr2A.!!$F2 4063

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 246 0.036952 CTCATGTTCAGTGTCCCGCT 60.037 55.0 0.00 0.00 0.0 5.52 F
978 1351 0.249114 GAGGAGAAATCGCGAGGTCC 60.249 60.0 16.66 16.79 0.0 4.46 F
1798 2213 0.036388 ATGAACAGATTGACCCGCGT 60.036 50.0 4.92 0.00 0.0 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1180 1566 0.037326 GGCGAGTCACTGGTGATTGA 60.037 55.0 6.71 0.0 42.18 2.57 R
1883 2298 0.249447 CACGACCAGTTGAGCTGTGA 60.249 55.0 0.00 0.0 43.55 3.58 R
3765 4202 0.108424 CTCTGTGAGAAGAAGGCCCG 60.108 60.0 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.721286 GACAATTGAGATATACCTGACTTGG 57.279 40.000 13.59 0.00 0.00 3.61
25 26 6.595682 ACAATTGAGATATACCTGACTTGGG 58.404 40.000 13.59 0.00 0.00 4.12
26 27 6.386927 ACAATTGAGATATACCTGACTTGGGA 59.613 38.462 13.59 0.00 0.00 4.37
27 28 5.871396 TTGAGATATACCTGACTTGGGAC 57.129 43.478 0.00 0.00 0.00 4.46
28 29 3.889538 TGAGATATACCTGACTTGGGACG 59.110 47.826 0.00 0.00 0.00 4.79
29 30 4.142790 GAGATATACCTGACTTGGGACGA 58.857 47.826 0.00 0.00 0.00 4.20
30 31 3.890147 AGATATACCTGACTTGGGACGAC 59.110 47.826 0.00 0.00 0.00 4.34
31 32 1.933021 ATACCTGACTTGGGACGACA 58.067 50.000 0.00 0.00 0.00 4.35
32 33 1.933021 TACCTGACTTGGGACGACAT 58.067 50.000 0.00 0.00 0.00 3.06
33 34 1.056660 ACCTGACTTGGGACGACATT 58.943 50.000 0.00 0.00 0.00 2.71
34 35 1.270839 ACCTGACTTGGGACGACATTG 60.271 52.381 0.00 0.00 0.00 2.82
35 36 1.270839 CCTGACTTGGGACGACATTGT 60.271 52.381 0.00 0.00 0.00 2.71
36 37 2.069273 CTGACTTGGGACGACATTGTC 58.931 52.381 6.73 6.73 38.17 3.18
37 38 1.691976 TGACTTGGGACGACATTGTCT 59.308 47.619 14.54 2.27 38.91 3.41
38 39 2.104111 TGACTTGGGACGACATTGTCTT 59.896 45.455 14.54 5.34 38.91 3.01
39 40 3.139077 GACTTGGGACGACATTGTCTTT 58.861 45.455 14.54 1.63 38.91 2.52
40 41 4.202274 TGACTTGGGACGACATTGTCTTTA 60.202 41.667 14.54 0.00 38.91 1.85
41 42 4.315803 ACTTGGGACGACATTGTCTTTAG 58.684 43.478 14.54 1.98 38.91 1.85
42 43 4.039973 ACTTGGGACGACATTGTCTTTAGA 59.960 41.667 14.54 0.00 38.91 2.10
43 44 3.921677 TGGGACGACATTGTCTTTAGAC 58.078 45.455 14.54 2.92 44.97 2.59
44 45 3.259902 GGGACGACATTGTCTTTAGACC 58.740 50.000 14.54 8.38 44.15 3.85
45 46 3.259902 GGACGACATTGTCTTTAGACCC 58.740 50.000 14.54 0.00 44.15 4.46
46 47 2.921754 GACGACATTGTCTTTAGACCCG 59.078 50.000 14.54 1.69 44.15 5.28
47 48 2.559668 ACGACATTGTCTTTAGACCCGA 59.440 45.455 14.54 0.00 44.15 5.14
48 49 3.006110 ACGACATTGTCTTTAGACCCGAA 59.994 43.478 14.54 0.00 44.15 4.30
49 50 3.367025 CGACATTGTCTTTAGACCCGAAC 59.633 47.826 14.54 0.00 44.15 3.95
50 51 4.566987 GACATTGTCTTTAGACCCGAACT 58.433 43.478 9.59 0.00 44.15 3.01
51 52 4.566987 ACATTGTCTTTAGACCCGAACTC 58.433 43.478 7.39 0.00 44.15 3.01
52 53 4.283722 ACATTGTCTTTAGACCCGAACTCT 59.716 41.667 7.39 0.00 44.15 3.24
53 54 3.936372 TGTCTTTAGACCCGAACTCTG 57.064 47.619 7.39 0.00 44.15 3.35
54 55 3.493334 TGTCTTTAGACCCGAACTCTGA 58.507 45.455 7.39 0.00 44.15 3.27
55 56 3.893200 TGTCTTTAGACCCGAACTCTGAA 59.107 43.478 7.39 0.00 44.15 3.02
56 57 4.527038 TGTCTTTAGACCCGAACTCTGAAT 59.473 41.667 7.39 0.00 44.15 2.57
57 58 5.011738 TGTCTTTAGACCCGAACTCTGAATT 59.988 40.000 7.39 0.00 44.15 2.17
58 59 5.348997 GTCTTTAGACCCGAACTCTGAATTG 59.651 44.000 0.00 0.00 39.07 2.32
59 60 5.245301 TCTTTAGACCCGAACTCTGAATTGA 59.755 40.000 0.00 0.00 0.00 2.57
60 61 3.601443 AGACCCGAACTCTGAATTGAG 57.399 47.619 0.00 0.00 39.78 3.02
61 62 3.165875 AGACCCGAACTCTGAATTGAGA 58.834 45.455 0.00 0.00 37.50 3.27
62 63 3.772025 AGACCCGAACTCTGAATTGAGAT 59.228 43.478 0.00 0.00 37.50 2.75
63 64 4.956700 AGACCCGAACTCTGAATTGAGATA 59.043 41.667 0.00 0.00 37.50 1.98
64 65 5.422331 AGACCCGAACTCTGAATTGAGATAA 59.578 40.000 0.00 0.00 37.50 1.75
65 66 5.665459 ACCCGAACTCTGAATTGAGATAAG 58.335 41.667 0.00 0.00 37.50 1.73
66 67 4.509600 CCCGAACTCTGAATTGAGATAAGC 59.490 45.833 0.00 0.00 37.50 3.09
67 68 5.355596 CCGAACTCTGAATTGAGATAAGCT 58.644 41.667 0.00 0.00 37.50 3.74
68 69 5.814705 CCGAACTCTGAATTGAGATAAGCTT 59.185 40.000 3.48 3.48 37.50 3.74
69 70 6.314896 CCGAACTCTGAATTGAGATAAGCTTT 59.685 38.462 3.20 0.00 37.50 3.51
70 71 7.397970 CGAACTCTGAATTGAGATAAGCTTTC 58.602 38.462 3.20 2.24 37.50 2.62
71 72 7.465245 CGAACTCTGAATTGAGATAAGCTTTCC 60.465 40.741 3.20 0.00 37.50 3.13
72 73 6.715280 ACTCTGAATTGAGATAAGCTTTCCA 58.285 36.000 3.20 0.77 37.50 3.53
73 74 6.822676 ACTCTGAATTGAGATAAGCTTTCCAG 59.177 38.462 3.20 0.00 37.50 3.86
74 75 6.238429 CTCTGAATTGAGATAAGCTTTCCAGC 60.238 42.308 3.20 0.00 40.21 4.85
75 76 8.542040 CTCTGAATTGAGATAAGCTTTCCAGCA 61.542 40.741 3.20 0.00 41.37 4.41
84 85 2.888834 GCTTTCCAGCAAGTCCAAAA 57.111 45.000 0.00 0.00 46.49 2.44
85 86 2.473816 GCTTTCCAGCAAGTCCAAAAC 58.526 47.619 0.00 0.00 46.49 2.43
86 87 2.159114 GCTTTCCAGCAAGTCCAAAACA 60.159 45.455 0.00 0.00 46.49 2.83
87 88 3.678529 GCTTTCCAGCAAGTCCAAAACAA 60.679 43.478 0.00 0.00 46.49 2.83
88 89 3.518634 TTCCAGCAAGTCCAAAACAAC 57.481 42.857 0.00 0.00 0.00 3.32
89 90 2.733956 TCCAGCAAGTCCAAAACAACT 58.266 42.857 0.00 0.00 0.00 3.16
90 91 2.687935 TCCAGCAAGTCCAAAACAACTC 59.312 45.455 0.00 0.00 0.00 3.01
91 92 2.426738 CCAGCAAGTCCAAAACAACTCA 59.573 45.455 0.00 0.00 0.00 3.41
92 93 3.119173 CCAGCAAGTCCAAAACAACTCAA 60.119 43.478 0.00 0.00 0.00 3.02
93 94 4.441913 CCAGCAAGTCCAAAACAACTCAAT 60.442 41.667 0.00 0.00 0.00 2.57
94 95 5.111293 CAGCAAGTCCAAAACAACTCAATT 58.889 37.500 0.00 0.00 0.00 2.32
95 96 5.232838 CAGCAAGTCCAAAACAACTCAATTC 59.767 40.000 0.00 0.00 0.00 2.17
96 97 5.105392 AGCAAGTCCAAAACAACTCAATTCA 60.105 36.000 0.00 0.00 0.00 2.57
97 98 5.580297 GCAAGTCCAAAACAACTCAATTCAA 59.420 36.000 0.00 0.00 0.00 2.69
98 99 6.091986 GCAAGTCCAAAACAACTCAATTCAAA 59.908 34.615 0.00 0.00 0.00 2.69
99 100 7.674705 GCAAGTCCAAAACAACTCAATTCAAAG 60.675 37.037 0.00 0.00 0.00 2.77
100 101 6.935167 AGTCCAAAACAACTCAATTCAAAGT 58.065 32.000 0.00 0.00 0.00 2.66
101 102 7.386059 AGTCCAAAACAACTCAATTCAAAGTT 58.614 30.769 0.00 0.00 36.16 2.66
106 107 5.262588 ACAACTCAATTCAAAGTTCACCC 57.737 39.130 0.00 0.00 33.53 4.61
113 114 2.358322 TCAAAGTTCACCCCTTGGTC 57.642 50.000 0.00 0.00 45.57 4.02
114 115 1.850345 TCAAAGTTCACCCCTTGGTCT 59.150 47.619 0.00 0.00 45.57 3.85
119 120 2.986728 AGTTCACCCCTTGGTCTTACAT 59.013 45.455 0.00 0.00 45.57 2.29
122 123 3.112263 TCACCCCTTGGTCTTACATAGG 58.888 50.000 0.00 0.00 45.57 2.57
142 143 2.098770 GGTAGATCAACCTCGTAGCGTT 59.901 50.000 0.00 0.00 36.53 4.84
147 155 2.669364 TCAACCTCGTAGCGTTTCTTC 58.331 47.619 0.00 0.00 0.00 2.87
158 166 4.228912 AGCGTTTCTTCTGTTTGATTGG 57.771 40.909 0.00 0.00 0.00 3.16
168 176 5.782893 TCTGTTTGATTGGGTTTTAGTGG 57.217 39.130 0.00 0.00 0.00 4.00
177 185 4.173290 TGGGTTTTAGTGGTTGCTACTT 57.827 40.909 0.00 0.00 0.00 2.24
178 186 4.538738 TGGGTTTTAGTGGTTGCTACTTT 58.461 39.130 0.00 0.00 0.00 2.66
191 199 5.154222 GTTGCTACTTTTTGCCATAGACAC 58.846 41.667 0.00 0.00 0.00 3.67
194 202 4.201724 GCTACTTTTTGCCATAGACACGAG 60.202 45.833 0.00 0.00 0.00 4.18
213 221 1.834263 AGAATCGGGAAGACCTCTTGG 59.166 52.381 0.00 0.00 36.11 3.61
227 235 5.662674 ACCTCTTGGTACTACTCATGTTC 57.337 43.478 0.00 0.00 46.43 3.18
228 236 5.084519 ACCTCTTGGTACTACTCATGTTCA 58.915 41.667 0.00 0.00 46.43 3.18
230 238 5.186021 CCTCTTGGTACTACTCATGTTCAGT 59.814 44.000 0.00 0.00 0.00 3.41
231 239 6.025749 TCTTGGTACTACTCATGTTCAGTG 57.974 41.667 0.00 0.00 0.00 3.66
232 240 5.538813 TCTTGGTACTACTCATGTTCAGTGT 59.461 40.000 0.00 0.00 0.00 3.55
238 246 0.036952 CTCATGTTCAGTGTCCCGCT 60.037 55.000 0.00 0.00 0.00 5.52
243 251 1.069090 TTCAGTGTCCCGCTGTGTC 59.931 57.895 4.86 0.00 41.99 3.67
308 342 9.507280 ACATCTTAAATTCATGCTTGTTATTCG 57.493 29.630 0.00 0.00 0.00 3.34
320 354 1.472082 TGTTATTCGGTTGCATGCAGG 59.528 47.619 21.50 14.15 0.00 4.85
327 361 1.001048 CGGTTGCATGCAGGGATTATG 60.001 52.381 21.50 2.69 0.00 1.90
331 365 3.301794 TGCATGCAGGGATTATGTTCT 57.698 42.857 18.46 0.00 0.00 3.01
334 368 4.142116 TGCATGCAGGGATTATGTTCTTTG 60.142 41.667 18.46 0.00 0.00 2.77
335 369 4.098349 GCATGCAGGGATTATGTTCTTTGA 59.902 41.667 14.21 0.00 0.00 2.69
338 372 5.076182 TGCAGGGATTATGTTCTTTGACAA 58.924 37.500 0.00 0.00 32.47 3.18
341 375 6.753744 GCAGGGATTATGTTCTTTGACAAATC 59.246 38.462 0.05 0.00 32.47 2.17
342 376 7.577426 GCAGGGATTATGTTCTTTGACAAATCA 60.577 37.037 0.05 2.57 33.57 2.57
374 408 8.846607 GTTTTCAACACCGTCAATAATCATTAC 58.153 33.333 0.00 0.00 0.00 1.89
375 409 6.671614 TCAACACCGTCAATAATCATTACC 57.328 37.500 0.00 0.00 0.00 2.85
376 410 6.174049 TCAACACCGTCAATAATCATTACCA 58.826 36.000 0.00 0.00 0.00 3.25
377 411 6.655425 TCAACACCGTCAATAATCATTACCAA 59.345 34.615 0.00 0.00 0.00 3.67
378 412 7.175119 TCAACACCGTCAATAATCATTACCAAA 59.825 33.333 0.00 0.00 0.00 3.28
379 413 7.639113 ACACCGTCAATAATCATTACCAAAT 57.361 32.000 0.00 0.00 0.00 2.32
380 414 8.062065 ACACCGTCAATAATCATTACCAAATT 57.938 30.769 0.00 0.00 0.00 1.82
381 415 9.179909 ACACCGTCAATAATCATTACCAAATTA 57.820 29.630 0.00 0.00 0.00 1.40
382 416 9.445786 CACCGTCAATAATCATTACCAAATTAC 57.554 33.333 0.00 0.00 0.00 1.89
383 417 8.626526 ACCGTCAATAATCATTACCAAATTACC 58.373 33.333 0.00 0.00 0.00 2.85
407 441 1.400494 GTTGGTTTGGCGATCGCTAAT 59.600 47.619 34.50 0.00 41.06 1.73
413 447 1.286501 TGGCGATCGCTAATTCACAC 58.713 50.000 36.25 18.54 41.60 3.82
414 448 0.582005 GGCGATCGCTAATTCACACC 59.418 55.000 36.25 14.36 41.60 4.16
417 451 1.517276 CGATCGCTAATTCACACCGTC 59.483 52.381 0.26 0.00 0.00 4.79
418 452 2.794981 CGATCGCTAATTCACACCGTCT 60.795 50.000 0.26 0.00 0.00 4.18
419 453 2.736144 TCGCTAATTCACACCGTCTT 57.264 45.000 0.00 0.00 0.00 3.01
420 454 3.853831 TCGCTAATTCACACCGTCTTA 57.146 42.857 0.00 0.00 0.00 2.10
421 455 3.766151 TCGCTAATTCACACCGTCTTAG 58.234 45.455 0.00 0.00 0.00 2.18
422 456 2.858344 CGCTAATTCACACCGTCTTAGG 59.142 50.000 0.00 0.00 37.30 2.69
424 458 3.369157 GCTAATTCACACCGTCTTAGGGT 60.369 47.826 0.00 0.00 36.70 4.34
425 459 3.782656 AATTCACACCGTCTTAGGGTT 57.217 42.857 0.00 0.00 33.44 4.11
427 461 2.536761 TCACACCGTCTTAGGGTTTG 57.463 50.000 0.00 0.00 35.72 2.93
428 462 1.764134 TCACACCGTCTTAGGGTTTGT 59.236 47.619 5.21 0.00 35.83 2.83
429 463 2.171027 TCACACCGTCTTAGGGTTTGTT 59.829 45.455 5.21 0.00 35.83 2.83
432 466 4.758165 CACACCGTCTTAGGGTTTGTTATT 59.242 41.667 0.00 0.00 33.44 1.40
434 468 6.596497 CACACCGTCTTAGGGTTTGTTATTAT 59.404 38.462 0.00 0.00 33.44 1.28
435 469 6.820152 ACACCGTCTTAGGGTTTGTTATTATC 59.180 38.462 0.00 0.00 33.44 1.75
436 470 6.259387 CACCGTCTTAGGGTTTGTTATTATCC 59.741 42.308 0.00 0.00 33.44 2.59
437 471 6.070078 ACCGTCTTAGGGTTTGTTATTATCCA 60.070 38.462 0.00 0.00 31.25 3.41
438 472 6.482308 CCGTCTTAGGGTTTGTTATTATCCAG 59.518 42.308 0.00 0.00 0.00 3.86
439 473 7.270047 CGTCTTAGGGTTTGTTATTATCCAGA 58.730 38.462 0.00 0.00 0.00 3.86
440 474 7.224167 CGTCTTAGGGTTTGTTATTATCCAGAC 59.776 40.741 0.00 0.00 0.00 3.51
441 475 7.224167 GTCTTAGGGTTTGTTATTATCCAGACG 59.776 40.741 0.00 0.00 0.00 4.18
443 776 4.080526 AGGGTTTGTTATTATCCAGACGCT 60.081 41.667 0.00 0.00 35.19 5.07
450 783 3.895232 ATTATCCAGACGCTGTCAACT 57.105 42.857 10.52 0.00 34.60 3.16
453 786 2.325583 TCCAGACGCTGTCAACTTTT 57.674 45.000 10.52 0.00 34.60 2.27
454 787 2.639065 TCCAGACGCTGTCAACTTTTT 58.361 42.857 10.52 0.00 34.60 1.94
455 788 2.612212 TCCAGACGCTGTCAACTTTTTC 59.388 45.455 10.52 0.00 34.60 2.29
457 790 3.003689 CCAGACGCTGTCAACTTTTTCAT 59.996 43.478 10.52 0.00 34.60 2.57
464 797 5.463061 CGCTGTCAACTTTTTCATGGAAAAT 59.537 36.000 12.34 0.00 40.50 1.82
465 798 6.018832 CGCTGTCAACTTTTTCATGGAAAATT 60.019 34.615 12.34 4.31 40.50 1.82
466 799 7.347448 GCTGTCAACTTTTTCATGGAAAATTC 58.653 34.615 12.34 3.20 40.50 2.17
467 800 7.225341 GCTGTCAACTTTTTCATGGAAAATTCT 59.775 33.333 12.34 0.00 40.50 2.40
468 801 8.647143 TGTCAACTTTTTCATGGAAAATTCTC 57.353 30.769 12.34 4.11 40.50 2.87
469 802 8.256605 TGTCAACTTTTTCATGGAAAATTCTCA 58.743 29.630 12.34 6.33 40.50 3.27
470 803 9.264719 GTCAACTTTTTCATGGAAAATTCTCAT 57.735 29.630 12.34 0.00 40.50 2.90
471 804 9.835389 TCAACTTTTTCATGGAAAATTCTCATT 57.165 25.926 12.34 0.00 40.50 2.57
472 805 9.872757 CAACTTTTTCATGGAAAATTCTCATTG 57.127 29.630 12.34 7.06 40.50 2.82
473 806 9.617523 AACTTTTTCATGGAAAATTCTCATTGT 57.382 25.926 12.34 1.97 40.50 2.71
474 807 9.048446 ACTTTTTCATGGAAAATTCTCATTGTG 57.952 29.630 12.34 0.02 40.50 3.33
475 808 7.966246 TTTTCATGGAAAATTCTCATTGTGG 57.034 32.000 0.00 0.00 36.73 4.17
476 809 6.669125 TTCATGGAAAATTCTCATTGTGGT 57.331 33.333 0.00 0.00 0.00 4.16
477 810 6.271488 TCATGGAAAATTCTCATTGTGGTC 57.729 37.500 0.00 0.00 0.00 4.02
478 811 6.012113 TCATGGAAAATTCTCATTGTGGTCT 58.988 36.000 0.00 0.00 0.00 3.85
479 812 6.494491 TCATGGAAAATTCTCATTGTGGTCTT 59.506 34.615 0.00 0.00 0.00 3.01
480 813 6.729690 TGGAAAATTCTCATTGTGGTCTTT 57.270 33.333 0.00 0.00 0.00 2.52
481 814 7.831691 TGGAAAATTCTCATTGTGGTCTTTA 57.168 32.000 0.00 0.00 0.00 1.85
482 815 7.657336 TGGAAAATTCTCATTGTGGTCTTTAC 58.343 34.615 0.00 0.00 0.00 2.01
483 816 6.801862 GGAAAATTCTCATTGTGGTCTTTACG 59.198 38.462 0.00 0.00 0.00 3.18
484 817 6.877611 AAATTCTCATTGTGGTCTTTACGT 57.122 33.333 0.00 0.00 0.00 3.57
485 818 5.862924 ATTCTCATTGTGGTCTTTACGTG 57.137 39.130 0.00 0.00 0.00 4.49
486 819 4.330944 TCTCATTGTGGTCTTTACGTGT 57.669 40.909 0.00 0.00 0.00 4.49
487 820 4.055360 TCTCATTGTGGTCTTTACGTGTG 58.945 43.478 0.00 0.00 0.00 3.82
488 821 2.546368 TCATTGTGGTCTTTACGTGTGC 59.454 45.455 0.00 0.00 0.00 4.57
489 822 2.025589 TTGTGGTCTTTACGTGTGCA 57.974 45.000 0.00 0.00 0.00 4.57
490 823 1.292061 TGTGGTCTTTACGTGTGCAC 58.708 50.000 10.75 10.75 0.00 4.57
491 824 1.292061 GTGGTCTTTACGTGTGCACA 58.708 50.000 17.42 17.42 0.00 4.57
492 825 1.260561 GTGGTCTTTACGTGTGCACAG 59.739 52.381 22.40 16.54 0.00 3.66
503 836 2.388121 GTGTGCACAGAAACAGAATGC 58.612 47.619 22.40 0.00 42.53 3.56
531 864 5.837586 GTGAACTTCACATTCTGACTCTC 57.162 43.478 15.77 0.00 46.22 3.20
532 865 5.537188 GTGAACTTCACATTCTGACTCTCT 58.463 41.667 15.77 0.00 46.22 3.10
576 917 1.665448 CGCAGTCAGTCAGTCAGTCAG 60.665 57.143 0.00 0.00 0.00 3.51
577 918 1.339610 GCAGTCAGTCAGTCAGTCAGT 59.660 52.381 0.00 0.00 0.00 3.41
578 919 2.606795 GCAGTCAGTCAGTCAGTCAGTC 60.607 54.545 0.00 0.00 0.00 3.51
579 920 2.620585 CAGTCAGTCAGTCAGTCAGTCA 59.379 50.000 0.00 0.00 0.00 3.41
580 921 2.884012 AGTCAGTCAGTCAGTCAGTCAG 59.116 50.000 0.00 0.00 0.00 3.51
768 1141 4.554036 GCTGGCCATCCCCGTCTC 62.554 72.222 5.51 0.00 0.00 3.36
769 1142 4.227134 CTGGCCATCCCCGTCTCG 62.227 72.222 5.51 0.00 0.00 4.04
781 1154 3.151022 GTCTCGGCCCTCCTCCTG 61.151 72.222 0.00 0.00 0.00 3.86
806 1179 5.503927 TCGGTCTACTCCCGCTATATATTT 58.496 41.667 0.00 0.00 45.09 1.40
976 1349 1.313812 ACGAGGAGAAATCGCGAGGT 61.314 55.000 16.66 4.10 43.91 3.85
977 1350 0.592754 CGAGGAGAAATCGCGAGGTC 60.593 60.000 16.66 14.28 32.81 3.85
978 1351 0.249114 GAGGAGAAATCGCGAGGTCC 60.249 60.000 16.66 16.79 0.00 4.46
979 1352 1.589196 GGAGAAATCGCGAGGTCCG 60.589 63.158 16.66 0.00 42.21 4.79
1104 1490 3.423154 GCCACGTTCCTCAAGGCG 61.423 66.667 0.00 0.00 35.42 5.52
1180 1566 0.475906 GCTGGTGGAGCCCAATATCT 59.524 55.000 0.00 0.00 42.54 1.98
1181 1567 1.544314 GCTGGTGGAGCCCAATATCTC 60.544 57.143 0.00 0.00 42.54 2.75
1182 1568 1.770658 CTGGTGGAGCCCAATATCTCA 59.229 52.381 0.00 0.00 34.18 3.27
1183 1569 2.173356 CTGGTGGAGCCCAATATCTCAA 59.827 50.000 0.00 0.00 34.18 3.02
1184 1570 2.785269 TGGTGGAGCCCAATATCTCAAT 59.215 45.455 0.00 0.00 34.18 2.57
1185 1571 3.181440 TGGTGGAGCCCAATATCTCAATC 60.181 47.826 0.00 0.00 34.18 2.67
1186 1572 3.181440 GGTGGAGCCCAATATCTCAATCA 60.181 47.826 0.00 0.00 34.18 2.57
1187 1573 3.817647 GTGGAGCCCAATATCTCAATCAC 59.182 47.826 0.00 0.00 34.18 3.06
1188 1574 3.181440 TGGAGCCCAATATCTCAATCACC 60.181 47.826 0.00 0.00 0.00 4.02
1189 1575 3.181440 GGAGCCCAATATCTCAATCACCA 60.181 47.826 0.00 0.00 0.00 4.17
1190 1576 4.070716 GAGCCCAATATCTCAATCACCAG 58.929 47.826 0.00 0.00 0.00 4.00
1191 1577 3.461085 AGCCCAATATCTCAATCACCAGT 59.539 43.478 0.00 0.00 0.00 4.00
1192 1578 3.567164 GCCCAATATCTCAATCACCAGTG 59.433 47.826 0.00 0.00 0.00 3.66
1193 1579 4.686944 GCCCAATATCTCAATCACCAGTGA 60.687 45.833 2.42 2.42 44.59 3.41
1194 1580 4.818546 CCCAATATCTCAATCACCAGTGAC 59.181 45.833 1.88 0.00 43.11 3.67
1195 1581 5.397221 CCCAATATCTCAATCACCAGTGACT 60.397 44.000 1.88 0.00 43.11 3.41
1196 1582 5.757320 CCAATATCTCAATCACCAGTGACTC 59.243 44.000 1.88 0.00 43.11 3.36
1197 1583 3.516981 ATCTCAATCACCAGTGACTCG 57.483 47.619 1.88 0.00 43.11 4.18
1198 1584 1.067565 TCTCAATCACCAGTGACTCGC 60.068 52.381 1.88 0.00 43.11 5.03
1199 1585 0.037326 TCAATCACCAGTGACTCGCC 60.037 55.000 1.88 0.00 43.11 5.54
1200 1586 1.021390 CAATCACCAGTGACTCGCCC 61.021 60.000 1.88 0.00 43.11 6.13
1201 1587 2.185310 AATCACCAGTGACTCGCCCC 62.185 60.000 1.88 0.00 43.11 5.80
1202 1588 4.742201 CACCAGTGACTCGCCCCG 62.742 72.222 0.00 0.00 0.00 5.73
1531 1945 0.246360 GGCCGCCAAAGTAAGCAATT 59.754 50.000 3.91 0.00 0.00 2.32
1587 2001 2.898612 TCTCTCTGATGCCATCTCCATC 59.101 50.000 6.21 0.00 39.56 3.51
1589 2003 1.003349 CTCTGATGCCATCTCCATCCC 59.997 57.143 6.21 0.00 38.61 3.85
1602 2016 4.370776 TCTCCATCCCTGAAATTGGACTA 58.629 43.478 0.00 0.00 34.62 2.59
1607 2021 5.480073 CCATCCCTGAAATTGGACTAACAAA 59.520 40.000 0.00 0.00 33.48 2.83
1630 2044 3.815809 AGTGTGATTTCAGGTCGGAAAA 58.184 40.909 0.93 0.00 39.94 2.29
1636 2050 0.250727 TTCAGGTCGGAAAAGGGCTG 60.251 55.000 0.00 0.00 0.00 4.85
1648 2062 0.329596 AAGGGCTGTCCAAGGATGAC 59.670 55.000 0.00 0.00 38.24 3.06
1734 2149 7.715657 ACTGCAGAATGTTCAGTTAATTTTGA 58.284 30.769 23.35 0.00 36.25 2.69
1767 2182 1.808343 GCAATGTGCTCATGTCACTGA 59.192 47.619 17.17 3.93 40.96 3.41
1798 2213 0.036388 ATGAACAGATTGACCCGCGT 60.036 50.000 4.92 0.00 0.00 6.01
1883 2298 3.244249 GCCTTTCTTCTACTGGTGAGTGT 60.244 47.826 0.00 0.00 33.21 3.55
1884 2299 4.561105 CCTTTCTTCTACTGGTGAGTGTC 58.439 47.826 0.00 0.00 33.21 3.67
1971 2389 6.644347 AGTTGTAACCTTATGGACTGATCAG 58.356 40.000 21.37 21.37 37.04 2.90
1998 2416 4.811969 TTGGTTCTTTAGGCTCGACATA 57.188 40.909 0.00 0.00 0.00 2.29
2055 2473 1.080434 GCGGTCGAAGCTTCTCAGT 60.080 57.895 23.50 0.00 0.00 3.41
2089 2507 5.485620 AGTATCTTGGTCCGGTAAGTTTTC 58.514 41.667 0.00 0.00 0.00 2.29
2104 2525 7.331792 GGTAAGTTTTCGCAAACATTTTACAC 58.668 34.615 13.08 4.54 44.32 2.90
2115 2536 6.035542 GCAAACATTTTACACGGGATAAATGG 59.964 38.462 23.15 12.84 40.52 3.16
2135 2556 3.323115 TGGATAGCTGGAGTAGAATGCAG 59.677 47.826 0.00 0.00 41.22 4.41
2154 2575 3.557898 GCAGGTCCATGAGAGTTCAGAAA 60.558 47.826 0.00 0.00 36.61 2.52
2173 2594 8.908786 TCAGAAAGACTAATGATTCAAACTGT 57.091 30.769 0.00 0.00 0.00 3.55
2207 2628 2.166254 CCTGCAGAAAGAGAGAGAGGAC 59.834 54.545 17.39 0.00 0.00 3.85
2267 2688 0.254178 ACAGCAGGCAAATCCTCGAT 59.746 50.000 0.00 0.00 45.52 3.59
2273 2694 1.269102 AGGCAAATCCTCGATACGTCG 60.269 52.381 0.00 0.00 43.20 5.12
2390 2811 6.514947 ACTATCAACACACAACATTGCATTT 58.485 32.000 0.00 0.00 0.00 2.32
2410 2831 6.936900 GCATTTGACCTATCACCTATGTGTAT 59.063 38.462 0.00 0.00 43.26 2.29
2427 2848 9.933723 CTATGTGTATTGGATCATCATCTAACA 57.066 33.333 0.00 0.00 32.70 2.41
2433 2854 9.499479 GTATTGGATCATCATCTAACATTGTCT 57.501 33.333 0.00 0.00 32.70 3.41
2527 2948 2.047560 GCGGGGCGACTAGTTGTT 60.048 61.111 11.83 0.00 0.00 2.83
2706 3128 4.525912 ATGAGAAAGTTCCCAAATGTGC 57.474 40.909 0.00 0.00 0.00 4.57
2715 3137 4.460382 AGTTCCCAAATGTGCTGACAATAG 59.540 41.667 0.00 0.00 35.11 1.73
2716 3138 3.355378 TCCCAAATGTGCTGACAATAGG 58.645 45.455 0.00 0.00 35.11 2.57
2717 3139 3.091545 CCCAAATGTGCTGACAATAGGT 58.908 45.455 0.00 0.00 35.11 3.08
2744 3168 6.788684 TCCAATTTGCATTCTCAATTGTTG 57.211 33.333 15.93 5.74 0.00 3.33
2752 3176 6.773080 TGCATTCTCAATTGTTGTTTTTGTG 58.227 32.000 5.13 0.00 0.00 3.33
2759 3183 7.601886 TCTCAATTGTTGTTTTTGTGTGATTGT 59.398 29.630 5.13 0.00 0.00 2.71
2803 3227 0.251077 AGGAGTTTTGGAGCAGGCTG 60.251 55.000 10.94 10.94 0.00 4.85
2886 3310 0.613012 GCAGAAACCATCCCTTGCCT 60.613 55.000 0.00 0.00 0.00 4.75
2971 3395 5.958380 AGATCATAGCCAACCGGAGATATTA 59.042 40.000 9.46 0.00 0.00 0.98
2998 3422 0.107703 TGGATTCATCGAAAGGCGCT 60.108 50.000 7.64 0.00 40.61 5.92
3021 3445 7.305705 CGCTGTAAACATCGAAAAATCAACAAA 60.306 33.333 0.24 0.00 37.65 2.83
3041 3465 5.068723 ACAAATTCCATGCCTGAAGATCATC 59.931 40.000 0.00 0.00 0.00 2.92
3055 3479 7.048629 TGAAGATCATCAGGAAGATAGTGAC 57.951 40.000 0.00 0.00 34.43 3.67
3067 3491 6.266330 AGGAAGATAGTGACGATGATCATTCA 59.734 38.462 10.14 7.82 36.00 2.57
3068 3492 7.039152 AGGAAGATAGTGACGATGATCATTCAT 60.039 37.037 10.14 0.00 45.39 2.57
3097 3521 3.428063 AGGGAGAAGATCATTGGGAGA 57.572 47.619 0.00 0.00 0.00 3.71
3437 3863 6.906901 AGGAATAAAGTCACCTATTGGGAGTA 59.093 38.462 0.00 0.00 38.76 2.59
3478 3906 9.809096 CTTGTGTAGATCTTGTAGTGATGTATT 57.191 33.333 0.00 0.00 0.00 1.89
3513 3941 6.545666 TGTTCAAATTGGACACAAGTACAGAT 59.454 34.615 2.39 0.00 40.39 2.90
3577 4005 4.078537 TCCGAGAGAATGCAATTTCCAAA 58.921 39.130 0.00 0.00 36.07 3.28
3579 4007 5.185635 TCCGAGAGAATGCAATTTCCAAATT 59.814 36.000 0.00 0.00 36.07 1.82
3586 4023 6.652062 AGAATGCAATTTCCAAATTCAGAACC 59.348 34.615 0.00 0.00 36.07 3.62
3592 4029 4.453480 TTCCAAATTCAGAACCTGGAGT 57.547 40.909 12.72 0.00 37.48 3.85
3593 4030 4.453480 TCCAAATTCAGAACCTGGAGTT 57.547 40.909 10.00 0.00 43.07 3.01
3594 4031 4.803452 TCCAAATTCAGAACCTGGAGTTT 58.197 39.130 10.00 0.00 39.40 2.66
3595 4032 5.208121 TCCAAATTCAGAACCTGGAGTTTT 58.792 37.500 10.00 0.00 39.40 2.43
3596 4033 6.369629 TCCAAATTCAGAACCTGGAGTTTTA 58.630 36.000 10.00 0.00 39.40 1.52
3597 4034 6.836527 TCCAAATTCAGAACCTGGAGTTTTAA 59.163 34.615 10.00 0.00 39.40 1.52
3598 4035 6.923508 CCAAATTCAGAACCTGGAGTTTTAAC 59.076 38.462 0.00 0.00 39.40 2.01
3612 4049 7.438564 TGGAGTTTTAACTTTTAAGGCATTCC 58.561 34.615 0.00 0.00 39.88 3.01
3734 4171 9.855021 ATCAAAAGTTAAATTAAGGATTGGACG 57.145 29.630 0.00 0.00 0.00 4.79
3735 4172 8.301002 TCAAAAGTTAAATTAAGGATTGGACGG 58.699 33.333 0.00 0.00 0.00 4.79
3736 4173 6.769134 AAGTTAAATTAAGGATTGGACGGG 57.231 37.500 0.00 0.00 0.00 5.28
3737 4174 4.643334 AGTTAAATTAAGGATTGGACGGGC 59.357 41.667 0.00 0.00 0.00 6.13
3738 4175 2.818751 AATTAAGGATTGGACGGGCA 57.181 45.000 0.00 0.00 0.00 5.36
3739 4176 3.312736 AATTAAGGATTGGACGGGCAT 57.687 42.857 0.00 0.00 0.00 4.40
3740 4177 2.818751 TTAAGGATTGGACGGGCATT 57.181 45.000 0.00 0.00 0.00 3.56
3741 4178 3.935818 TTAAGGATTGGACGGGCATTA 57.064 42.857 0.00 0.00 0.00 1.90
3742 4179 4.447138 TTAAGGATTGGACGGGCATTAT 57.553 40.909 0.00 0.00 0.00 1.28
3743 4180 2.276732 AGGATTGGACGGGCATTATG 57.723 50.000 0.00 0.00 0.00 1.90
3744 4181 0.598065 GGATTGGACGGGCATTATGC 59.402 55.000 8.93 8.93 44.08 3.14
3745 4182 0.238289 GATTGGACGGGCATTATGCG 59.762 55.000 11.28 0.74 46.21 4.73
3773 4210 1.250840 AAAGGATTGTGCGGGCCTTC 61.251 55.000 0.84 0.00 39.71 3.46
3786 4223 1.066502 GGGCCTTCTTCTCACAGAGAC 60.067 57.143 0.84 0.00 38.51 3.36
3787 4224 1.620819 GGCCTTCTTCTCACAGAGACA 59.379 52.381 0.00 0.00 38.51 3.41
3788 4225 2.037772 GGCCTTCTTCTCACAGAGACAA 59.962 50.000 0.00 0.00 38.51 3.18
3796 4233 3.572642 TCTCACAGAGACAACACCCTTA 58.427 45.455 0.00 0.00 33.35 2.69
3800 4237 5.502079 TCACAGAGACAACACCCTTAAAAA 58.498 37.500 0.00 0.00 0.00 1.94
3837 4274 5.678132 AATGCTGCAAGTTTTGAAATTCC 57.322 34.783 6.36 0.00 35.30 3.01
3838 4275 4.405116 TGCTGCAAGTTTTGAAATTCCT 57.595 36.364 0.00 0.00 35.30 3.36
3896 4347 6.662414 TCAAGATCATCGTATTTTGTCCAC 57.338 37.500 0.00 0.00 0.00 4.02
3903 4354 3.142174 TCGTATTTTGTCCACATGTGCA 58.858 40.909 20.81 11.08 0.00 4.57
3906 4357 4.556501 CGTATTTTGTCCACATGTGCAACT 60.557 41.667 20.81 11.57 38.04 3.16
3908 4359 4.991153 TTTTGTCCACATGTGCAACTAA 57.009 36.364 20.81 18.14 38.04 2.24
3910 4361 4.991153 TTGTCCACATGTGCAACTAAAA 57.009 36.364 20.81 8.19 38.04 1.52
3911 4362 4.566545 TGTCCACATGTGCAACTAAAAG 57.433 40.909 20.81 3.52 38.04 2.27
3951 4402 0.401738 TGGGGCCTTCTCACAAAGAG 59.598 55.000 0.84 0.00 46.14 2.85
3991 4442 6.494666 AATTAGGGTATGCTGCTTAGTGTA 57.505 37.500 0.00 0.00 0.00 2.90
4092 4544 1.038681 TCGCACCACCCGCTCTTATA 61.039 55.000 0.00 0.00 0.00 0.98
4099 4551 2.180276 CACCCGCTCTTATATAGCCCT 58.820 52.381 2.85 0.00 36.60 5.19
4100 4552 2.166664 CACCCGCTCTTATATAGCCCTC 59.833 54.545 2.85 0.00 36.60 4.30
4108 4560 0.395311 TATATAGCCCTCGCTCCCCG 60.395 60.000 0.00 0.00 43.95 5.73
4120 4572 1.680651 CTCCCCGCTCACTCACTCT 60.681 63.158 0.00 0.00 0.00 3.24
4121 4573 0.394488 CTCCCCGCTCACTCACTCTA 60.394 60.000 0.00 0.00 0.00 2.43
4126 4581 0.888619 CGCTCACTCACTCTACCCAA 59.111 55.000 0.00 0.00 0.00 4.12
4144 4599 0.460311 AAGCGAGGTGGGACTAATCG 59.540 55.000 0.00 0.00 36.51 3.34
4150 4605 1.897802 AGGTGGGACTAATCGAAACGT 59.102 47.619 0.00 0.00 0.00 3.99
4174 4629 0.951040 CTCCGCCTCGTTTTGCTTCT 60.951 55.000 0.00 0.00 0.00 2.85
4177 4632 0.110192 CGCCTCGTTTTGCTTCTTCC 60.110 55.000 0.00 0.00 0.00 3.46
4183 4638 0.664466 GTTTTGCTTCTTCCGCTGCC 60.664 55.000 0.00 0.00 0.00 4.85
4184 4639 0.823356 TTTTGCTTCTTCCGCTGCCT 60.823 50.000 0.00 0.00 0.00 4.75
4185 4640 1.237285 TTTGCTTCTTCCGCTGCCTC 61.237 55.000 0.00 0.00 0.00 4.70
4186 4641 2.821810 GCTTCTTCCGCTGCCTCC 60.822 66.667 0.00 0.00 0.00 4.30
4187 4642 2.985456 CTTCTTCCGCTGCCTCCT 59.015 61.111 0.00 0.00 0.00 3.69
4188 4643 1.298014 CTTCTTCCGCTGCCTCCTT 59.702 57.895 0.00 0.00 0.00 3.36
4189 4644 0.322008 CTTCTTCCGCTGCCTCCTTT 60.322 55.000 0.00 0.00 0.00 3.11
4190 4645 0.321653 TTCTTCCGCTGCCTCCTTTC 60.322 55.000 0.00 0.00 0.00 2.62
4191 4646 1.003355 CTTCCGCTGCCTCCTTTCA 60.003 57.895 0.00 0.00 0.00 2.69
4192 4647 0.606401 CTTCCGCTGCCTCCTTTCAA 60.606 55.000 0.00 0.00 0.00 2.69
4193 4648 0.606401 TTCCGCTGCCTCCTTTCAAG 60.606 55.000 0.00 0.00 0.00 3.02
4205 4660 1.160137 CTTTCAAGGAGAAGTGGCGG 58.840 55.000 0.00 0.00 37.57 6.13
4206 4661 0.472471 TTTCAAGGAGAAGTGGCGGT 59.528 50.000 0.00 0.00 37.57 5.68
4207 4662 0.034896 TTCAAGGAGAAGTGGCGGTC 59.965 55.000 0.00 0.00 0.00 4.79
4208 4663 1.376037 CAAGGAGAAGTGGCGGTCC 60.376 63.158 0.00 0.00 0.00 4.46
4209 4664 1.841556 AAGGAGAAGTGGCGGTCCA 60.842 57.895 0.00 0.00 40.85 4.02
4221 4676 2.345991 GGTCCACCGCAGTAGCAA 59.654 61.111 0.00 0.00 42.27 3.91
4222 4677 1.302192 GGTCCACCGCAGTAGCAAA 60.302 57.895 0.00 0.00 42.27 3.68
4223 4678 0.887387 GGTCCACCGCAGTAGCAAAA 60.887 55.000 0.00 0.00 42.27 2.44
4224 4679 0.517316 GTCCACCGCAGTAGCAAAAG 59.483 55.000 0.00 0.00 42.27 2.27
4225 4680 0.605319 TCCACCGCAGTAGCAAAAGG 60.605 55.000 0.00 0.00 42.27 3.11
4226 4681 1.210155 CACCGCAGTAGCAAAAGGC 59.790 57.895 0.00 0.00 42.27 4.35
4227 4682 1.971695 ACCGCAGTAGCAAAAGGCC 60.972 57.895 0.00 0.00 46.50 5.19
4228 4683 2.700773 CCGCAGTAGCAAAAGGCCC 61.701 63.158 0.00 0.00 46.50 5.80
4229 4684 1.971167 CGCAGTAGCAAAAGGCCCA 60.971 57.895 0.00 0.00 46.50 5.36
4230 4685 1.315257 CGCAGTAGCAAAAGGCCCAT 61.315 55.000 0.00 0.00 46.50 4.00
4231 4686 0.174162 GCAGTAGCAAAAGGCCCATG 59.826 55.000 0.00 0.00 46.50 3.66
4232 4687 0.819582 CAGTAGCAAAAGGCCCATGG 59.180 55.000 4.14 4.14 46.50 3.66
4233 4688 0.324645 AGTAGCAAAAGGCCCATGGG 60.325 55.000 27.87 27.87 46.50 4.00
4243 4698 4.371417 CCCATGGGCCACAGCAGT 62.371 66.667 20.41 0.00 42.56 4.40
4244 4699 3.066190 CCATGGGCCACAGCAGTG 61.066 66.667 9.28 0.94 45.47 3.66
4253 4708 3.659334 ACAGCAGTGACGCCAATG 58.341 55.556 0.00 0.00 40.97 2.82
4254 4709 1.968017 ACAGCAGTGACGCCAATGG 60.968 57.895 0.48 0.00 38.67 3.16
4255 4710 3.058160 AGCAGTGACGCCAATGGC 61.058 61.111 15.52 15.52 46.75 4.40
4264 4719 2.749016 GCCAATGGCCCAAGCAAA 59.251 55.556 14.47 0.00 44.06 3.68
4265 4720 1.376295 GCCAATGGCCCAAGCAAAG 60.376 57.895 14.47 0.00 44.06 2.77
4266 4721 1.376295 CCAATGGCCCAAGCAAAGC 60.376 57.895 0.00 0.00 42.56 3.51
4267 4722 1.371932 CAATGGCCCAAGCAAAGCA 59.628 52.632 0.00 0.00 42.56 3.91
4268 4723 0.672401 CAATGGCCCAAGCAAAGCAG 60.672 55.000 0.00 0.00 42.56 4.24
4269 4724 2.459202 AATGGCCCAAGCAAAGCAGC 62.459 55.000 0.00 0.00 42.56 5.25
4270 4725 4.383861 GGCCCAAGCAAAGCAGCC 62.384 66.667 0.00 0.00 42.56 4.85
4271 4726 4.729856 GCCCAAGCAAAGCAGCCG 62.730 66.667 0.00 0.00 39.53 5.52
4272 4727 3.297620 CCCAAGCAAAGCAGCCGT 61.298 61.111 0.00 0.00 34.23 5.68
4273 4728 1.971167 CCCAAGCAAAGCAGCCGTA 60.971 57.895 0.00 0.00 34.23 4.02
4274 4729 1.210155 CCAAGCAAAGCAGCCGTAC 59.790 57.895 0.00 0.00 34.23 3.67
4275 4730 1.237285 CCAAGCAAAGCAGCCGTACT 61.237 55.000 0.00 0.00 34.23 2.73
4276 4731 0.593128 CAAGCAAAGCAGCCGTACTT 59.407 50.000 0.00 0.00 34.23 2.24
4277 4732 1.001378 CAAGCAAAGCAGCCGTACTTT 60.001 47.619 0.00 0.00 36.56 2.66
4278 4733 1.318576 AGCAAAGCAGCCGTACTTTT 58.681 45.000 0.00 0.00 33.92 2.27
4279 4734 1.681264 AGCAAAGCAGCCGTACTTTTT 59.319 42.857 0.00 0.00 33.92 1.94
4302 4757 6.928979 TTTTTGAAGGCGGATTTATATCGA 57.071 33.333 0.00 0.00 0.00 3.59
4303 4758 5.917541 TTTGAAGGCGGATTTATATCGAC 57.082 39.130 0.00 0.00 0.00 4.20
4304 4759 4.594123 TGAAGGCGGATTTATATCGACA 57.406 40.909 0.00 0.00 0.00 4.35
4305 4760 4.951254 TGAAGGCGGATTTATATCGACAA 58.049 39.130 0.00 0.00 0.00 3.18
4306 4761 4.988540 TGAAGGCGGATTTATATCGACAAG 59.011 41.667 0.00 0.00 0.00 3.16
4307 4762 4.866508 AGGCGGATTTATATCGACAAGA 57.133 40.909 0.00 0.00 0.00 3.02
4308 4763 5.407407 AGGCGGATTTATATCGACAAGAT 57.593 39.130 0.00 0.00 43.19 2.40
4309 4764 5.411781 AGGCGGATTTATATCGACAAGATC 58.588 41.667 0.00 0.00 40.66 2.75
4310 4765 5.047306 AGGCGGATTTATATCGACAAGATCA 60.047 40.000 0.00 0.00 40.66 2.92
4311 4766 5.289675 GGCGGATTTATATCGACAAGATCAG 59.710 44.000 0.00 0.00 40.66 2.90
4312 4767 5.220303 GCGGATTTATATCGACAAGATCAGC 60.220 44.000 0.00 0.00 40.66 4.26
4313 4768 6.096036 CGGATTTATATCGACAAGATCAGCT 58.904 40.000 0.00 0.00 40.66 4.24
4314 4769 6.034363 CGGATTTATATCGACAAGATCAGCTG 59.966 42.308 7.63 7.63 40.66 4.24
4315 4770 7.093354 GGATTTATATCGACAAGATCAGCTGA 58.907 38.462 20.79 20.79 40.66 4.26
4316 4771 7.600375 GGATTTATATCGACAAGATCAGCTGAA 59.400 37.037 22.50 4.23 40.66 3.02
4317 4772 8.893219 ATTTATATCGACAAGATCAGCTGAAA 57.107 30.769 22.50 5.30 40.66 2.69
4318 4773 7.700322 TTATATCGACAAGATCAGCTGAAAC 57.300 36.000 22.50 17.39 40.66 2.78
4319 4774 2.328473 TCGACAAGATCAGCTGAAACG 58.672 47.619 22.50 18.07 0.00 3.60
4320 4775 1.201855 CGACAAGATCAGCTGAAACGC 60.202 52.381 22.50 10.59 0.00 4.84
4321 4776 2.072298 GACAAGATCAGCTGAAACGCT 58.928 47.619 22.50 12.74 41.90 5.07
4330 4785 3.319137 AGCTGAAACGCTGACTAATCA 57.681 42.857 0.00 0.00 39.16 2.57
4331 4786 3.664107 AGCTGAAACGCTGACTAATCAA 58.336 40.909 0.00 0.00 39.16 2.57
4332 4787 4.065088 AGCTGAAACGCTGACTAATCAAA 58.935 39.130 0.00 0.00 39.16 2.69
4333 4788 4.515191 AGCTGAAACGCTGACTAATCAAAA 59.485 37.500 0.00 0.00 39.16 2.44
4334 4789 5.182001 AGCTGAAACGCTGACTAATCAAAAT 59.818 36.000 0.00 0.00 39.16 1.82
4335 4790 6.371548 AGCTGAAACGCTGACTAATCAAAATA 59.628 34.615 0.00 0.00 39.16 1.40
4336 4791 7.021196 GCTGAAACGCTGACTAATCAAAATAA 58.979 34.615 0.00 0.00 33.30 1.40
4337 4792 7.698130 GCTGAAACGCTGACTAATCAAAATAAT 59.302 33.333 0.00 0.00 33.30 1.28
4338 4793 9.559958 CTGAAACGCTGACTAATCAAAATAATT 57.440 29.630 0.00 0.00 33.30 1.40
4353 4808 8.615878 TCAAAATAATTAGTATGCATAGGCGT 57.384 30.769 6.67 0.00 45.35 5.68
4354 4809 8.503196 TCAAAATAATTAGTATGCATAGGCGTG 58.497 33.333 6.67 0.00 45.35 5.34
4355 4810 6.422776 AATAATTAGTATGCATAGGCGTGC 57.577 37.500 6.67 2.45 45.35 5.34
4361 4816 4.131376 GCATAGGCGTGCACTCAT 57.869 55.556 16.19 7.34 44.43 2.90
4362 4817 2.397751 GCATAGGCGTGCACTCATT 58.602 52.632 16.19 1.70 44.43 2.57
4363 4818 0.734889 GCATAGGCGTGCACTCATTT 59.265 50.000 16.19 0.00 44.43 2.32
4364 4819 1.133025 GCATAGGCGTGCACTCATTTT 59.867 47.619 16.19 0.00 44.43 1.82
4365 4820 2.789208 CATAGGCGTGCACTCATTTTG 58.211 47.619 16.19 2.64 0.00 2.44
4366 4821 0.521291 TAGGCGTGCACTCATTTTGC 59.479 50.000 16.19 8.69 40.63 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.386927 TCCCAAGTCAGGTATATCTCAATTGT 59.613 38.462 5.13 0.00 0.00 2.71
3 4 6.463049 CGTCCCAAGTCAGGTATATCTCAATT 60.463 42.308 0.00 0.00 0.00 2.32
4 5 5.011125 CGTCCCAAGTCAGGTATATCTCAAT 59.989 44.000 0.00 0.00 0.00 2.57
5 6 4.341235 CGTCCCAAGTCAGGTATATCTCAA 59.659 45.833 0.00 0.00 0.00 3.02
6 7 3.889538 CGTCCCAAGTCAGGTATATCTCA 59.110 47.826 0.00 0.00 0.00 3.27
7 8 4.023021 GTCGTCCCAAGTCAGGTATATCTC 60.023 50.000 0.00 0.00 0.00 2.75
8 9 3.890147 GTCGTCCCAAGTCAGGTATATCT 59.110 47.826 0.00 0.00 0.00 1.98
9 10 3.635373 TGTCGTCCCAAGTCAGGTATATC 59.365 47.826 0.00 0.00 0.00 1.63
10 11 3.638860 TGTCGTCCCAAGTCAGGTATAT 58.361 45.455 0.00 0.00 0.00 0.86
11 12 3.090210 TGTCGTCCCAAGTCAGGTATA 57.910 47.619 0.00 0.00 0.00 1.47
12 13 1.933021 TGTCGTCCCAAGTCAGGTAT 58.067 50.000 0.00 0.00 0.00 2.73
13 14 1.933021 ATGTCGTCCCAAGTCAGGTA 58.067 50.000 0.00 0.00 0.00 3.08
14 15 1.056660 AATGTCGTCCCAAGTCAGGT 58.943 50.000 0.00 0.00 0.00 4.00
15 16 1.270839 ACAATGTCGTCCCAAGTCAGG 60.271 52.381 0.00 0.00 0.00 3.86
16 17 2.069273 GACAATGTCGTCCCAAGTCAG 58.931 52.381 0.00 0.00 0.00 3.51
17 18 1.691976 AGACAATGTCGTCCCAAGTCA 59.308 47.619 7.83 0.00 37.67 3.41
18 19 2.457366 AGACAATGTCGTCCCAAGTC 57.543 50.000 7.83 0.00 37.67 3.01
19 20 2.930826 AAGACAATGTCGTCCCAAGT 57.069 45.000 7.83 0.00 37.67 3.16
20 21 4.389077 GTCTAAAGACAATGTCGTCCCAAG 59.611 45.833 7.83 1.97 44.18 3.61
21 22 4.312443 GTCTAAAGACAATGTCGTCCCAA 58.688 43.478 7.83 0.00 44.18 4.12
22 23 3.306502 GGTCTAAAGACAATGTCGTCCCA 60.307 47.826 7.83 0.00 46.47 4.37
23 24 3.259902 GGTCTAAAGACAATGTCGTCCC 58.740 50.000 7.83 0.42 46.47 4.46
24 25 3.259902 GGGTCTAAAGACAATGTCGTCC 58.740 50.000 7.83 2.24 46.47 4.79
25 26 2.921754 CGGGTCTAAAGACAATGTCGTC 59.078 50.000 7.83 0.00 46.47 4.20
26 27 2.559668 TCGGGTCTAAAGACAATGTCGT 59.440 45.455 7.83 1.22 46.47 4.34
27 28 3.226346 TCGGGTCTAAAGACAATGTCG 57.774 47.619 7.83 7.35 46.47 4.35
28 29 4.566987 AGTTCGGGTCTAAAGACAATGTC 58.433 43.478 5.02 5.02 46.47 3.06
29 30 4.283722 AGAGTTCGGGTCTAAAGACAATGT 59.716 41.667 11.98 0.00 46.47 2.71
30 31 4.627467 CAGAGTTCGGGTCTAAAGACAATG 59.373 45.833 11.98 1.59 46.47 2.82
31 32 4.527038 TCAGAGTTCGGGTCTAAAGACAAT 59.473 41.667 11.98 0.00 46.47 2.71
32 33 3.893200 TCAGAGTTCGGGTCTAAAGACAA 59.107 43.478 11.98 0.00 46.47 3.18
33 34 3.493334 TCAGAGTTCGGGTCTAAAGACA 58.507 45.455 11.98 0.00 46.47 3.41
34 35 4.516365 TTCAGAGTTCGGGTCTAAAGAC 57.484 45.455 1.30 1.30 44.04 3.01
35 36 5.245301 TCAATTCAGAGTTCGGGTCTAAAGA 59.755 40.000 0.00 0.00 0.00 2.52
36 37 5.479306 TCAATTCAGAGTTCGGGTCTAAAG 58.521 41.667 0.00 0.00 0.00 1.85
37 38 5.245301 TCTCAATTCAGAGTTCGGGTCTAAA 59.755 40.000 0.00 0.00 36.97 1.85
38 39 4.770531 TCTCAATTCAGAGTTCGGGTCTAA 59.229 41.667 0.00 0.00 36.97 2.10
39 40 4.341487 TCTCAATTCAGAGTTCGGGTCTA 58.659 43.478 0.00 0.00 36.97 2.59
40 41 3.165875 TCTCAATTCAGAGTTCGGGTCT 58.834 45.455 0.00 0.00 36.97 3.85
41 42 3.594603 TCTCAATTCAGAGTTCGGGTC 57.405 47.619 0.00 0.00 36.97 4.46
42 43 5.665459 CTTATCTCAATTCAGAGTTCGGGT 58.335 41.667 0.00 0.00 36.97 5.28
43 44 4.509600 GCTTATCTCAATTCAGAGTTCGGG 59.490 45.833 0.00 0.00 36.97 5.14
44 45 5.355596 AGCTTATCTCAATTCAGAGTTCGG 58.644 41.667 0.00 0.00 36.97 4.30
45 46 6.900568 AAGCTTATCTCAATTCAGAGTTCG 57.099 37.500 0.00 0.00 36.97 3.95
46 47 7.335422 TGGAAAGCTTATCTCAATTCAGAGTTC 59.665 37.037 0.00 0.00 36.97 3.01
47 48 7.170965 TGGAAAGCTTATCTCAATTCAGAGTT 58.829 34.615 0.00 0.00 36.97 3.01
48 49 6.715280 TGGAAAGCTTATCTCAATTCAGAGT 58.285 36.000 0.00 0.00 36.97 3.24
49 50 6.238429 GCTGGAAAGCTTATCTCAATTCAGAG 60.238 42.308 0.00 0.00 36.97 3.35
50 51 5.587844 GCTGGAAAGCTTATCTCAATTCAGA 59.412 40.000 0.00 0.00 0.00 3.27
51 52 5.356190 TGCTGGAAAGCTTATCTCAATTCAG 59.644 40.000 0.00 0.00 35.49 3.02
52 53 5.255687 TGCTGGAAAGCTTATCTCAATTCA 58.744 37.500 0.00 0.00 35.49 2.57
53 54 5.824904 TGCTGGAAAGCTTATCTCAATTC 57.175 39.130 0.00 0.00 35.49 2.17
54 55 5.713861 ACTTGCTGGAAAGCTTATCTCAATT 59.286 36.000 0.00 0.00 35.49 2.32
55 56 5.259632 ACTTGCTGGAAAGCTTATCTCAAT 58.740 37.500 0.00 0.00 35.49 2.57
56 57 4.655963 ACTTGCTGGAAAGCTTATCTCAA 58.344 39.130 0.00 0.38 35.49 3.02
57 58 4.256920 GACTTGCTGGAAAGCTTATCTCA 58.743 43.478 0.00 0.00 35.49 3.27
58 59 3.625313 GGACTTGCTGGAAAGCTTATCTC 59.375 47.826 0.00 0.00 35.49 2.75
59 60 3.009473 TGGACTTGCTGGAAAGCTTATCT 59.991 43.478 0.00 0.00 35.49 1.98
60 61 3.347216 TGGACTTGCTGGAAAGCTTATC 58.653 45.455 0.00 0.00 35.49 1.75
61 62 3.439857 TGGACTTGCTGGAAAGCTTAT 57.560 42.857 0.00 0.00 35.49 1.73
62 63 2.949177 TGGACTTGCTGGAAAGCTTA 57.051 45.000 0.00 0.00 35.49 3.09
63 64 2.071778 TTGGACTTGCTGGAAAGCTT 57.928 45.000 0.00 0.00 35.49 3.74
64 65 2.071778 TTTGGACTTGCTGGAAAGCT 57.928 45.000 0.00 0.00 35.49 3.74
65 66 2.159114 TGTTTTGGACTTGCTGGAAAGC 60.159 45.455 0.00 0.00 0.00 3.51
66 67 3.799281 TGTTTTGGACTTGCTGGAAAG 57.201 42.857 0.00 0.00 0.00 2.62
67 68 3.513515 AGTTGTTTTGGACTTGCTGGAAA 59.486 39.130 0.00 0.00 0.00 3.13
68 69 3.096092 AGTTGTTTTGGACTTGCTGGAA 58.904 40.909 0.00 0.00 0.00 3.53
69 70 2.687935 GAGTTGTTTTGGACTTGCTGGA 59.312 45.455 0.00 0.00 0.00 3.86
70 71 2.426738 TGAGTTGTTTTGGACTTGCTGG 59.573 45.455 0.00 0.00 0.00 4.85
71 72 3.781079 TGAGTTGTTTTGGACTTGCTG 57.219 42.857 0.00 0.00 0.00 4.41
72 73 5.105392 TGAATTGAGTTGTTTTGGACTTGCT 60.105 36.000 0.00 0.00 0.00 3.91
73 74 5.108517 TGAATTGAGTTGTTTTGGACTTGC 58.891 37.500 0.00 0.00 0.00 4.01
74 75 7.331687 ACTTTGAATTGAGTTGTTTTGGACTTG 59.668 33.333 0.00 0.00 0.00 3.16
75 76 7.386059 ACTTTGAATTGAGTTGTTTTGGACTT 58.614 30.769 0.00 0.00 0.00 3.01
76 77 6.935167 ACTTTGAATTGAGTTGTTTTGGACT 58.065 32.000 0.00 0.00 0.00 3.85
77 78 7.330700 TGAACTTTGAATTGAGTTGTTTTGGAC 59.669 33.333 3.86 0.00 36.31 4.02
78 79 7.330700 GTGAACTTTGAATTGAGTTGTTTTGGA 59.669 33.333 3.86 0.00 36.31 3.53
79 80 7.412891 GGTGAACTTTGAATTGAGTTGTTTTGG 60.413 37.037 3.86 0.00 36.31 3.28
80 81 7.412891 GGGTGAACTTTGAATTGAGTTGTTTTG 60.413 37.037 3.86 0.00 36.31 2.44
81 82 6.593770 GGGTGAACTTTGAATTGAGTTGTTTT 59.406 34.615 3.86 0.00 36.31 2.43
82 83 6.106003 GGGTGAACTTTGAATTGAGTTGTTT 58.894 36.000 3.86 0.00 36.31 2.83
83 84 5.395214 GGGGTGAACTTTGAATTGAGTTGTT 60.395 40.000 3.86 0.00 36.31 2.83
84 85 4.099419 GGGGTGAACTTTGAATTGAGTTGT 59.901 41.667 3.86 0.00 36.31 3.32
85 86 4.342092 AGGGGTGAACTTTGAATTGAGTTG 59.658 41.667 3.86 0.00 36.31 3.16
86 87 4.546674 AGGGGTGAACTTTGAATTGAGTT 58.453 39.130 0.00 0.00 38.72 3.01
87 88 4.184649 AGGGGTGAACTTTGAATTGAGT 57.815 40.909 0.00 0.00 0.00 3.41
88 89 4.262164 CCAAGGGGTGAACTTTGAATTGAG 60.262 45.833 0.00 0.00 0.00 3.02
89 90 3.640967 CCAAGGGGTGAACTTTGAATTGA 59.359 43.478 0.00 0.00 0.00 2.57
90 91 3.993920 CCAAGGGGTGAACTTTGAATTG 58.006 45.455 0.00 0.00 0.00 2.32
106 107 6.978674 TGATCTACCTATGTAAGACCAAGG 57.021 41.667 0.00 0.00 0.00 3.61
122 123 3.417690 AACGCTACGAGGTTGATCTAC 57.582 47.619 0.00 0.00 0.00 2.59
142 143 7.417342 CCACTAAAACCCAATCAAACAGAAGAA 60.417 37.037 0.00 0.00 0.00 2.52
147 155 5.529581 ACCACTAAAACCCAATCAAACAG 57.470 39.130 0.00 0.00 0.00 3.16
158 166 5.233476 GCAAAAAGTAGCAACCACTAAAACC 59.767 40.000 0.00 0.00 0.00 3.27
168 176 5.154222 GTGTCTATGGCAAAAAGTAGCAAC 58.846 41.667 0.00 0.00 0.00 4.17
177 185 3.616821 CGATTCTCGTGTCTATGGCAAAA 59.383 43.478 0.00 0.00 34.72 2.44
178 186 3.186909 CGATTCTCGTGTCTATGGCAAA 58.813 45.455 0.00 0.00 34.72 3.68
191 199 1.394618 AGAGGTCTTCCCGATTCTCG 58.605 55.000 0.00 0.00 40.07 4.04
194 202 2.317530 CCAAGAGGTCTTCCCGATTC 57.682 55.000 0.00 0.00 38.74 2.52
210 218 5.279306 GGACACTGAACATGAGTAGTACCAA 60.279 44.000 0.00 0.00 0.00 3.67
213 221 4.674623 CGGGACACTGAACATGAGTAGTAC 60.675 50.000 0.00 0.00 0.00 2.73
214 222 3.442625 CGGGACACTGAACATGAGTAGTA 59.557 47.826 0.00 0.00 0.00 1.82
215 223 2.231478 CGGGACACTGAACATGAGTAGT 59.769 50.000 0.00 0.00 0.00 2.73
216 224 2.881074 CGGGACACTGAACATGAGTAG 58.119 52.381 0.00 0.00 0.00 2.57
217 225 1.067142 GCGGGACACTGAACATGAGTA 60.067 52.381 0.00 0.00 0.00 2.59
218 226 0.320771 GCGGGACACTGAACATGAGT 60.321 55.000 0.00 0.00 0.00 3.41
219 227 0.036952 AGCGGGACACTGAACATGAG 60.037 55.000 0.00 0.00 0.00 2.90
220 228 0.320683 CAGCGGGACACTGAACATGA 60.321 55.000 0.00 0.00 41.72 3.07
221 229 0.603707 ACAGCGGGACACTGAACATG 60.604 55.000 0.00 0.00 41.72 3.21
222 230 0.603707 CACAGCGGGACACTGAACAT 60.604 55.000 0.00 0.00 41.72 2.71
224 232 1.222115 GACACAGCGGGACACTGAAC 61.222 60.000 0.00 0.00 41.72 3.18
225 233 1.069090 GACACAGCGGGACACTGAA 59.931 57.895 0.00 0.00 41.72 3.02
226 234 1.681486 TTGACACAGCGGGACACTGA 61.681 55.000 0.00 0.00 41.72 3.41
227 235 0.603707 ATTGACACAGCGGGACACTG 60.604 55.000 0.00 0.00 45.17 3.66
228 236 0.320771 GATTGACACAGCGGGACACT 60.321 55.000 0.00 0.00 0.00 3.55
230 238 0.107643 TTGATTGACACAGCGGGACA 59.892 50.000 0.00 0.00 0.00 4.02
231 239 0.798776 CTTGATTGACACAGCGGGAC 59.201 55.000 0.00 0.00 0.00 4.46
232 240 0.396435 ACTTGATTGACACAGCGGGA 59.604 50.000 0.00 0.00 0.00 5.14
286 320 8.586273 CAACCGAATAACAAGCATGAATTTAAG 58.414 33.333 0.00 0.00 0.00 1.85
289 323 5.348451 GCAACCGAATAACAAGCATGAATTT 59.652 36.000 0.00 0.00 0.00 1.82
295 329 3.772932 CATGCAACCGAATAACAAGCAT 58.227 40.909 0.00 0.00 41.42 3.79
304 338 0.396139 ATCCCTGCATGCAACCGAAT 60.396 50.000 22.88 8.22 0.00 3.34
307 341 1.001048 CATAATCCCTGCATGCAACCG 60.001 52.381 22.88 10.23 0.00 4.44
308 342 2.034124 ACATAATCCCTGCATGCAACC 58.966 47.619 22.88 0.00 0.00 3.77
327 361 9.476761 GAAAACACAATTGATTTGTCAAAGAAC 57.523 29.630 13.59 0.00 45.55 3.01
383 417 1.685302 CGATCGCCAAACCAACTTTG 58.315 50.000 0.26 0.00 39.31 2.77
395 429 0.582005 GGTGTGAATTAGCGATCGCC 59.418 55.000 34.89 20.20 43.17 5.54
398 432 2.810650 AGACGGTGTGAATTAGCGATC 58.189 47.619 5.38 0.65 41.14 3.69
401 435 2.858344 CCTAAGACGGTGTGAATTAGCG 59.142 50.000 0.00 0.00 43.90 4.26
407 441 2.171027 ACAAACCCTAAGACGGTGTGAA 59.829 45.455 4.18 0.00 40.59 3.18
413 447 6.350906 TGGATAATAACAAACCCTAAGACGG 58.649 40.000 0.00 0.00 0.00 4.79
414 448 7.224167 GTCTGGATAATAACAAACCCTAAGACG 59.776 40.741 0.00 0.00 0.00 4.18
417 451 6.018180 GCGTCTGGATAATAACAAACCCTAAG 60.018 42.308 0.00 0.00 0.00 2.18
418 452 5.818857 GCGTCTGGATAATAACAAACCCTAA 59.181 40.000 0.00 0.00 0.00 2.69
419 453 5.129815 AGCGTCTGGATAATAACAAACCCTA 59.870 40.000 0.00 0.00 0.00 3.53
420 454 4.080526 AGCGTCTGGATAATAACAAACCCT 60.081 41.667 0.00 0.00 0.00 4.34
421 455 4.035208 CAGCGTCTGGATAATAACAAACCC 59.965 45.833 0.00 0.00 0.00 4.11
422 456 4.634443 ACAGCGTCTGGATAATAACAAACC 59.366 41.667 10.80 0.00 35.51 3.27
424 458 5.483811 TGACAGCGTCTGGATAATAACAAA 58.516 37.500 10.80 0.00 35.51 2.83
425 459 5.079689 TGACAGCGTCTGGATAATAACAA 57.920 39.130 10.80 0.00 35.51 2.83
427 461 5.109903 AGTTGACAGCGTCTGGATAATAAC 58.890 41.667 10.80 4.18 35.51 1.89
428 462 5.339008 AGTTGACAGCGTCTGGATAATAA 57.661 39.130 10.80 0.00 35.51 1.40
429 463 5.339008 AAGTTGACAGCGTCTGGATAATA 57.661 39.130 10.80 0.00 35.51 0.98
432 466 3.678056 AAAGTTGACAGCGTCTGGATA 57.322 42.857 10.80 0.00 35.51 2.59
434 468 2.325583 AAAAGTTGACAGCGTCTGGA 57.674 45.000 10.80 0.00 35.51 3.86
435 469 2.354510 TGAAAAAGTTGACAGCGTCTGG 59.645 45.455 10.80 0.00 35.51 3.86
436 470 3.673746 TGAAAAAGTTGACAGCGTCTG 57.326 42.857 9.49 5.47 37.52 3.51
437 471 3.003689 CCATGAAAAAGTTGACAGCGTCT 59.996 43.478 0.00 0.00 33.15 4.18
438 472 3.003275 TCCATGAAAAAGTTGACAGCGTC 59.997 43.478 0.00 2.32 0.00 5.19
439 473 2.948979 TCCATGAAAAAGTTGACAGCGT 59.051 40.909 0.00 0.00 0.00 5.07
440 474 3.624326 TCCATGAAAAAGTTGACAGCG 57.376 42.857 0.00 0.00 0.00 5.18
441 475 6.849588 ATTTTCCATGAAAAAGTTGACAGC 57.150 33.333 6.14 0.00 43.32 4.40
443 776 8.256605 TGAGAATTTTCCATGAAAAAGTTGACA 58.743 29.630 6.14 0.00 43.32 3.58
450 783 7.992033 ACCACAATGAGAATTTTCCATGAAAAA 59.008 29.630 6.14 0.00 43.32 1.94
453 786 6.494491 AGACCACAATGAGAATTTTCCATGAA 59.506 34.615 0.00 0.00 0.00 2.57
454 787 6.012113 AGACCACAATGAGAATTTTCCATGA 58.988 36.000 0.00 0.00 0.00 3.07
455 788 6.276832 AGACCACAATGAGAATTTTCCATG 57.723 37.500 0.00 0.00 0.00 3.66
457 790 6.729690 AAAGACCACAATGAGAATTTTCCA 57.270 33.333 0.00 0.00 0.00 3.53
464 797 4.509970 CACACGTAAAGACCACAATGAGAA 59.490 41.667 0.00 0.00 0.00 2.87
465 798 4.055360 CACACGTAAAGACCACAATGAGA 58.945 43.478 0.00 0.00 0.00 3.27
466 799 3.363970 GCACACGTAAAGACCACAATGAG 60.364 47.826 0.00 0.00 0.00 2.90
467 800 2.546368 GCACACGTAAAGACCACAATGA 59.454 45.455 0.00 0.00 0.00 2.57
468 801 2.289274 TGCACACGTAAAGACCACAATG 59.711 45.455 0.00 0.00 0.00 2.82
469 802 2.289547 GTGCACACGTAAAGACCACAAT 59.710 45.455 13.17 0.00 0.00 2.71
470 803 1.666700 GTGCACACGTAAAGACCACAA 59.333 47.619 13.17 0.00 0.00 3.33
471 804 1.292061 GTGCACACGTAAAGACCACA 58.708 50.000 13.17 0.00 0.00 4.17
472 805 1.260561 CTGTGCACACGTAAAGACCAC 59.739 52.381 17.42 0.00 0.00 4.16
473 806 1.137282 TCTGTGCACACGTAAAGACCA 59.863 47.619 17.42 0.00 0.00 4.02
474 807 1.860676 TCTGTGCACACGTAAAGACC 58.139 50.000 17.42 0.00 0.00 3.85
475 808 3.062909 TGTTTCTGTGCACACGTAAAGAC 59.937 43.478 17.42 8.38 0.00 3.01
476 809 3.263261 TGTTTCTGTGCACACGTAAAGA 58.737 40.909 17.42 12.17 0.00 2.52
477 810 3.308595 TCTGTTTCTGTGCACACGTAAAG 59.691 43.478 17.42 11.23 0.00 1.85
478 811 3.263261 TCTGTTTCTGTGCACACGTAAA 58.737 40.909 17.42 13.61 0.00 2.01
479 812 2.894902 TCTGTTTCTGTGCACACGTAA 58.105 42.857 17.42 7.93 0.00 3.18
480 813 2.588027 TCTGTTTCTGTGCACACGTA 57.412 45.000 17.42 1.04 0.00 3.57
481 814 1.732941 TTCTGTTTCTGTGCACACGT 58.267 45.000 17.42 0.00 0.00 4.49
482 815 2.642995 CATTCTGTTTCTGTGCACACG 58.357 47.619 17.42 12.47 0.00 4.49
483 816 2.033801 AGCATTCTGTTTCTGTGCACAC 59.966 45.455 17.42 6.85 38.23 3.82
484 817 2.291465 GAGCATTCTGTTTCTGTGCACA 59.709 45.455 20.37 20.37 38.23 4.57
485 818 2.291465 TGAGCATTCTGTTTCTGTGCAC 59.709 45.455 10.75 10.75 38.23 4.57
486 819 2.551032 CTGAGCATTCTGTTTCTGTGCA 59.449 45.455 0.00 0.00 38.23 4.57
487 820 2.551459 ACTGAGCATTCTGTTTCTGTGC 59.449 45.455 0.00 0.00 32.25 4.57
488 821 3.562973 ACACTGAGCATTCTGTTTCTGTG 59.437 43.478 8.25 8.25 41.98 3.66
489 822 3.562973 CACACTGAGCATTCTGTTTCTGT 59.437 43.478 0.00 0.00 33.75 3.41
490 823 3.811497 TCACACTGAGCATTCTGTTTCTG 59.189 43.478 0.00 0.00 33.75 3.02
491 824 4.077300 TCACACTGAGCATTCTGTTTCT 57.923 40.909 0.00 0.00 33.75 2.52
492 825 4.274459 AGTTCACACTGAGCATTCTGTTTC 59.726 41.667 0.00 0.00 33.75 2.78
531 864 3.744749 TTCACCGCCGCGTCGATAG 62.745 63.158 12.69 0.00 0.00 2.08
532 865 3.339539 TTTCACCGCCGCGTCGATA 62.340 57.895 12.69 0.00 0.00 2.92
630 971 2.626780 CGTGCTGACCTGTCTCGGA 61.627 63.158 0.00 0.00 0.00 4.55
704 1077 3.496131 TCGGATGCGGAAAAGCGC 61.496 61.111 6.82 0.00 40.67 5.92
744 1117 4.554036 GGATGGCCAGCGGGAGAC 62.554 72.222 16.15 0.00 35.59 3.36
751 1124 4.554036 GAGACGGGGATGGCCAGC 62.554 72.222 14.08 14.08 35.15 4.85
752 1125 4.227134 CGAGACGGGGATGGCCAG 62.227 72.222 13.05 0.00 35.15 4.85
763 1136 4.824515 AGGAGGAGGGCCGAGACG 62.825 72.222 0.00 0.00 39.96 4.18
771 1144 2.285889 TAGACCGAGCAGGAGGAGGG 62.286 65.000 5.19 0.00 45.00 4.30
772 1145 1.104577 GTAGACCGAGCAGGAGGAGG 61.105 65.000 5.19 0.00 45.00 4.30
773 1146 0.106918 AGTAGACCGAGCAGGAGGAG 60.107 60.000 5.19 0.00 45.00 3.69
774 1147 0.107116 GAGTAGACCGAGCAGGAGGA 60.107 60.000 5.19 0.00 45.00 3.71
775 1148 1.104577 GGAGTAGACCGAGCAGGAGG 61.105 65.000 5.19 0.00 45.00 4.30
776 1149 1.104577 GGGAGTAGACCGAGCAGGAG 61.105 65.000 5.19 0.00 45.00 3.69
777 1150 1.076923 GGGAGTAGACCGAGCAGGA 60.077 63.158 5.19 0.00 45.00 3.86
890 1263 1.595382 CCGATGGATCAACCGGAGC 60.595 63.158 9.46 0.00 44.29 4.70
931 1304 4.966787 TGTTTGACCCCGCTGGCC 62.967 66.667 0.00 0.00 37.83 5.36
940 1313 1.635663 CGTGCCGATCCTGTTTGACC 61.636 60.000 0.00 0.00 0.00 4.02
976 1349 3.641986 GCGCAACAACCGAACGGA 61.642 61.111 20.14 0.00 38.96 4.69
1089 1475 2.372690 CGACGCCTTGAGGAACGTG 61.373 63.158 7.31 0.00 34.79 4.49
1176 1562 3.181486 GCGAGTCACTGGTGATTGAGATA 60.181 47.826 6.71 0.00 42.18 1.98
1180 1566 0.037326 GGCGAGTCACTGGTGATTGA 60.037 55.000 6.71 0.00 42.18 2.57
1181 1567 1.021390 GGGCGAGTCACTGGTGATTG 61.021 60.000 6.71 1.94 42.18 2.67
1182 1568 1.296715 GGGCGAGTCACTGGTGATT 59.703 57.895 6.71 2.57 42.18 2.57
1183 1569 2.660064 GGGGCGAGTCACTGGTGAT 61.660 63.158 6.71 0.00 42.18 3.06
1184 1570 3.311110 GGGGCGAGTCACTGGTGA 61.311 66.667 0.00 0.00 37.24 4.02
1185 1571 4.742201 CGGGGCGAGTCACTGGTG 62.742 72.222 0.00 0.00 0.00 4.17
1326 1739 2.356313 ACCTTCTGCAGCGTCACG 60.356 61.111 9.47 0.00 0.00 4.35
1440 1853 0.099791 CGAAGAAGGAGACGGAGCTC 59.900 60.000 4.71 4.71 0.00 4.09
1552 1966 5.735285 TCAGAGAGATTTCTTGAAGAGCA 57.265 39.130 0.00 0.00 32.53 4.26
1587 2001 7.176690 ACACTATTTGTTAGTCCAATTTCAGGG 59.823 37.037 0.00 0.00 39.19 4.45
1589 2003 8.783093 TCACACTATTTGTTAGTCCAATTTCAG 58.217 33.333 0.00 0.00 39.19 3.02
1602 2016 5.181245 CCGACCTGAAATCACACTATTTGTT 59.819 40.000 0.00 0.00 35.67 2.83
1607 2021 4.819105 TTCCGACCTGAAATCACACTAT 57.181 40.909 0.00 0.00 0.00 2.12
1630 2044 0.842030 TGTCATCCTTGGACAGCCCT 60.842 55.000 0.00 0.00 40.16 5.19
1636 2050 1.743996 GAGCCTTGTCATCCTTGGAC 58.256 55.000 0.00 0.00 35.83 4.02
1883 2298 0.249447 CACGACCAGTTGAGCTGTGA 60.249 55.000 0.00 0.00 43.55 3.58
1884 2299 1.224069 CCACGACCAGTTGAGCTGTG 61.224 60.000 0.00 0.00 43.55 3.66
1971 2389 3.670627 CGAGCCTAAAGAACCAAACATGC 60.671 47.826 0.00 0.00 0.00 4.06
1998 2416 0.341258 TGATCTCCTTGCCCTCTCCT 59.659 55.000 0.00 0.00 0.00 3.69
2055 2473 4.507710 GACCAAGATACTTGATGCACTGA 58.492 43.478 12.25 0.00 0.00 3.41
2089 2507 2.690173 TCCCGTGTAAAATGTTTGCG 57.310 45.000 0.00 0.00 0.00 4.85
2104 2525 3.261897 ACTCCAGCTATCCATTTATCCCG 59.738 47.826 0.00 0.00 0.00 5.14
2115 2536 3.323403 ACCTGCATTCTACTCCAGCTATC 59.677 47.826 0.00 0.00 0.00 2.08
2135 2556 4.020662 AGTCTTTCTGAACTCTCATGGACC 60.021 45.833 0.00 0.00 0.00 4.46
2173 2594 4.835284 TTCTGCAGGGACAACACATATA 57.165 40.909 15.13 0.00 0.00 0.86
2176 2597 2.158623 TCTTTCTGCAGGGACAACACAT 60.159 45.455 15.13 0.00 0.00 3.21
2178 2599 1.876156 CTCTTTCTGCAGGGACAACAC 59.124 52.381 15.13 0.00 0.00 3.32
2185 2606 1.481772 CCTCTCTCTCTTTCTGCAGGG 59.518 57.143 15.13 4.92 0.00 4.45
2207 2628 5.061853 CCATCCTCAATCACAACCTCATAG 58.938 45.833 0.00 0.00 0.00 2.23
2410 2831 9.904198 TTTAGACAATGTTAGATGATGATCCAA 57.096 29.630 0.00 0.00 0.00 3.53
2427 2848 6.006759 GCAGAAAGCAGAGTTTTAGACAAT 57.993 37.500 0.00 0.00 44.79 2.71
2527 2948 2.909006 AGCCTTCAGAACTCCATCTTCA 59.091 45.455 0.00 0.00 0.00 3.02
2663 3084 0.834612 TATCCCAATCACCGGTCACC 59.165 55.000 2.59 0.00 0.00 4.02
2671 3092 7.012799 GGAACTTTCTCATTCTATCCCAATCAC 59.987 40.741 0.00 0.00 0.00 3.06
2706 3128 7.546358 TGCAAATTGGATAAACCTATTGTCAG 58.454 34.615 0.00 0.00 41.69 3.51
2715 3137 8.392612 CAATTGAGAATGCAAATTGGATAAACC 58.607 33.333 11.38 0.00 39.54 3.27
2716 3138 8.938906 ACAATTGAGAATGCAAATTGGATAAAC 58.061 29.630 19.68 0.00 0.00 2.01
2717 3139 9.504708 AACAATTGAGAATGCAAATTGGATAAA 57.495 25.926 19.68 0.00 0.00 1.40
2744 3168 5.858581 GGCTCATCTACAATCACACAAAAAC 59.141 40.000 0.00 0.00 0.00 2.43
2752 3176 3.624861 CAGTTGGGCTCATCTACAATCAC 59.375 47.826 0.00 0.00 0.00 3.06
2759 3183 2.768527 CCTCTTCAGTTGGGCTCATCTA 59.231 50.000 0.00 0.00 0.00 1.98
2803 3227 1.805871 CGCTCAGAAGGGATGCTTCTC 60.806 57.143 0.00 0.00 38.93 2.87
2886 3310 1.459348 TCAGTGACCTGAGGTGCCA 60.459 57.895 9.89 0.00 42.80 4.92
2906 3330 4.009675 TGGATGACATTTTCAGGTGTAGC 58.990 43.478 0.00 0.00 37.77 3.58
2908 3332 5.630121 AGTTGGATGACATTTTCAGGTGTA 58.370 37.500 0.00 0.00 37.77 2.90
2971 3395 2.787473 TCGATGAATCCAGCCTTGTT 57.213 45.000 0.00 0.00 0.00 2.83
3021 3445 4.399219 CTGATGATCTTCAGGCATGGAAT 58.601 43.478 24.31 0.00 39.58 3.01
3041 3465 5.444663 TGATCATCGTCACTATCTTCCTG 57.555 43.478 0.00 0.00 0.00 3.86
3067 3491 0.909610 TCTTCTCCCTTGGCACCGAT 60.910 55.000 0.00 0.00 0.00 4.18
3068 3492 0.909610 ATCTTCTCCCTTGGCACCGA 60.910 55.000 0.00 0.00 0.00 4.69
3069 3493 0.462759 GATCTTCTCCCTTGGCACCG 60.463 60.000 0.00 0.00 0.00 4.94
3097 3521 2.437281 CCCCAGCTGATATGAGTTGACT 59.563 50.000 17.39 0.00 0.00 3.41
3340 3764 2.408271 TCAGTAATCCTTGCTGCAGG 57.592 50.000 17.12 4.57 42.25 4.85
3375 3799 6.148315 CACAACTGATGAACAAGAATAGCTCA 59.852 38.462 0.00 0.00 0.00 4.26
3448 3874 5.105716 TCACTACAAGATCTACACAAGGAGC 60.106 44.000 0.00 0.00 0.00 4.70
3478 3906 7.173390 TGTGTCCAATTTGAACATCACGTATAA 59.827 33.333 0.00 0.00 0.00 0.98
3577 4005 7.898014 AAAGTTAAAACTCCAGGTTCTGAAT 57.102 32.000 0.00 0.00 38.57 2.57
3579 4007 8.810990 TTAAAAGTTAAAACTCCAGGTTCTGA 57.189 30.769 0.00 0.00 38.57 3.27
3586 4023 7.598869 GGAATGCCTTAAAAGTTAAAACTCCAG 59.401 37.037 0.00 0.00 38.57 3.86
3592 4029 7.967908 TGATGGGAATGCCTTAAAAGTTAAAA 58.032 30.769 0.00 0.00 0.00 1.52
3593 4030 7.453126 TCTGATGGGAATGCCTTAAAAGTTAAA 59.547 33.333 0.00 0.00 0.00 1.52
3594 4031 6.951198 TCTGATGGGAATGCCTTAAAAGTTAA 59.049 34.615 0.00 0.00 0.00 2.01
3595 4032 6.489603 TCTGATGGGAATGCCTTAAAAGTTA 58.510 36.000 0.00 0.00 0.00 2.24
3596 4033 5.332743 TCTGATGGGAATGCCTTAAAAGTT 58.667 37.500 0.00 0.00 0.00 2.66
3597 4034 4.934356 TCTGATGGGAATGCCTTAAAAGT 58.066 39.130 0.00 0.00 0.00 2.66
3598 4035 5.163478 CCTTCTGATGGGAATGCCTTAAAAG 60.163 44.000 1.73 0.00 0.00 2.27
3612 4049 6.418101 TCTAAAGTTCCATTCCTTCTGATGG 58.582 40.000 3.27 3.27 35.58 3.51
3717 4154 4.237976 TGCCCGTCCAATCCTTAATTTA 57.762 40.909 0.00 0.00 0.00 1.40
3724 4161 1.819305 GCATAATGCCCGTCCAATCCT 60.819 52.381 0.00 0.00 37.42 3.24
3725 4162 0.598065 GCATAATGCCCGTCCAATCC 59.402 55.000 0.00 0.00 37.42 3.01
3726 4163 0.238289 CGCATAATGCCCGTCCAATC 59.762 55.000 0.00 0.00 41.12 2.67
3727 4164 1.795170 GCGCATAATGCCCGTCCAAT 61.795 55.000 0.30 0.00 41.12 3.16
3728 4165 2.477176 GCGCATAATGCCCGTCCAA 61.477 57.895 0.30 0.00 41.12 3.53
3729 4166 2.899838 GCGCATAATGCCCGTCCA 60.900 61.111 0.30 0.00 41.12 4.02
3730 4167 1.999071 TTTGCGCATAATGCCCGTCC 61.999 55.000 12.75 0.00 41.12 4.79
3731 4168 0.179150 TTTTGCGCATAATGCCCGTC 60.179 50.000 12.75 0.00 41.12 4.79
3732 4169 0.244994 TTTTTGCGCATAATGCCCGT 59.755 45.000 12.75 0.00 41.12 5.28
3733 4170 3.041874 TTTTTGCGCATAATGCCCG 57.958 47.368 12.75 0.00 41.12 6.13
3752 4189 0.831711 AGGCCCGCACAATCCTTTTT 60.832 50.000 0.00 0.00 0.00 1.94
3753 4190 0.831711 AAGGCCCGCACAATCCTTTT 60.832 50.000 0.00 0.00 35.54 2.27
3754 4191 1.228862 AAGGCCCGCACAATCCTTT 60.229 52.632 0.00 0.00 35.54 3.11
3755 4192 1.678970 GAAGGCCCGCACAATCCTT 60.679 57.895 0.00 0.00 41.27 3.36
3758 4195 0.678048 AGAAGAAGGCCCGCACAATC 60.678 55.000 0.00 0.00 0.00 2.67
3765 4202 0.108424 CTCTGTGAGAAGAAGGCCCG 60.108 60.000 0.00 0.00 0.00 6.13
3773 4210 2.366916 AGGGTGTTGTCTCTGTGAGAAG 59.633 50.000 0.00 0.00 40.59 2.85
3821 4258 7.638134 TGCAAATTAGGAATTTCAAAACTTGC 58.362 30.769 16.02 16.02 38.97 4.01
3825 4262 6.348458 GCCCTGCAAATTAGGAATTTCAAAAC 60.348 38.462 0.00 0.00 38.97 2.43
3837 4274 3.006752 TGTTTGAAGGCCCTGCAAATTAG 59.993 43.478 19.90 0.00 40.59 1.73
3838 4275 2.968574 TGTTTGAAGGCCCTGCAAATTA 59.031 40.909 19.90 9.73 40.59 1.40
3866 4303 7.538678 ACAAAATACGATGATCTTGAAAGTTGC 59.461 33.333 0.00 0.00 0.00 4.17
3871 4322 7.174080 TGTGGACAAAATACGATGATCTTGAAA 59.826 33.333 0.00 0.00 0.00 2.69
3908 4359 8.150296 CCACCAATCCTGAAGTTAAAATTCTTT 58.850 33.333 3.98 0.00 0.00 2.52
3910 4361 6.211384 CCCACCAATCCTGAAGTTAAAATTCT 59.789 38.462 3.98 0.00 0.00 2.40
3911 4362 6.398095 CCCACCAATCCTGAAGTTAAAATTC 58.602 40.000 0.00 0.00 0.00 2.17
3920 4371 1.380380 GGCCCCACCAATCCTGAAG 60.380 63.158 0.00 0.00 38.86 3.02
3923 4374 1.380380 GAAGGCCCCACCAATCCTG 60.380 63.158 0.00 0.00 43.14 3.86
4038 4490 3.720193 GCTGCGTGGTGAGCACAG 61.720 66.667 15.55 6.73 40.01 3.66
4108 4560 1.404851 GCTTGGGTAGAGTGAGTGAGC 60.405 57.143 0.00 0.00 0.00 4.26
4110 4562 0.888619 CGCTTGGGTAGAGTGAGTGA 59.111 55.000 0.00 0.00 0.00 3.41
4112 4564 1.178276 CTCGCTTGGGTAGAGTGAGT 58.822 55.000 6.54 0.00 43.42 3.41
4116 4568 1.258445 CCACCTCGCTTGGGTAGAGT 61.258 60.000 0.00 0.00 35.00 3.24
4126 4581 0.395311 TCGATTAGTCCCACCTCGCT 60.395 55.000 0.00 0.00 0.00 4.93
4174 4629 0.606401 CTTGAAAGGAGGCAGCGGAA 60.606 55.000 0.00 0.00 0.00 4.30
4186 4641 1.160137 CCGCCACTTCTCCTTGAAAG 58.840 55.000 0.00 0.00 33.79 2.62
4187 4642 0.472471 ACCGCCACTTCTCCTTGAAA 59.528 50.000 0.00 0.00 33.79 2.69
4188 4643 0.034896 GACCGCCACTTCTCCTTGAA 59.965 55.000 0.00 0.00 0.00 2.69
4189 4644 1.671742 GACCGCCACTTCTCCTTGA 59.328 57.895 0.00 0.00 0.00 3.02
4190 4645 1.376037 GGACCGCCACTTCTCCTTG 60.376 63.158 0.00 0.00 0.00 3.61
4191 4646 1.841556 TGGACCGCCACTTCTCCTT 60.842 57.895 0.00 0.00 39.92 3.36
4192 4647 2.203788 TGGACCGCCACTTCTCCT 60.204 61.111 0.00 0.00 39.92 3.69
4204 4659 0.887387 TTTTGCTACTGCGGTGGACC 60.887 55.000 14.03 0.00 43.34 4.46
4205 4660 0.517316 CTTTTGCTACTGCGGTGGAC 59.483 55.000 14.03 4.93 43.34 4.02
4206 4661 0.605319 CCTTTTGCTACTGCGGTGGA 60.605 55.000 14.03 0.00 43.34 4.02
4207 4662 1.875963 CCTTTTGCTACTGCGGTGG 59.124 57.895 8.92 6.54 43.34 4.61
4208 4663 1.210155 GCCTTTTGCTACTGCGGTG 59.790 57.895 8.92 0.00 43.34 4.94
4209 4664 1.971695 GGCCTTTTGCTACTGCGGT 60.972 57.895 2.42 2.42 43.34 5.68
4210 4665 2.700773 GGGCCTTTTGCTACTGCGG 61.701 63.158 0.84 0.00 43.34 5.69
4211 4666 1.315257 ATGGGCCTTTTGCTACTGCG 61.315 55.000 4.53 0.00 43.34 5.18
4212 4667 0.174162 CATGGGCCTTTTGCTACTGC 59.826 55.000 4.53 0.00 40.92 4.40
4213 4668 0.819582 CCATGGGCCTTTTGCTACTG 59.180 55.000 2.85 0.00 40.92 2.74
4214 4669 0.324645 CCCATGGGCCTTTTGCTACT 60.325 55.000 20.41 0.00 40.92 2.57
4215 4670 2.201927 CCCATGGGCCTTTTGCTAC 58.798 57.895 20.41 0.00 40.92 3.58
4216 4671 4.783418 CCCATGGGCCTTTTGCTA 57.217 55.556 20.41 0.00 40.92 3.49
4226 4681 4.371417 ACTGCTGTGGCCCATGGG 62.371 66.667 27.87 27.87 37.74 4.00
4227 4682 3.066190 CACTGCTGTGGCCCATGG 61.066 66.667 15.43 4.14 40.33 3.66
4228 4683 2.034532 TCACTGCTGTGGCCCATG 59.965 61.111 21.80 0.00 43.94 3.66
4229 4684 2.034687 GTCACTGCTGTGGCCCAT 59.965 61.111 21.80 0.00 42.54 4.00
4230 4685 4.624364 CGTCACTGCTGTGGCCCA 62.624 66.667 20.82 0.93 45.29 5.36
4234 4689 1.968017 ATTGGCGTCACTGCTGTGG 60.968 57.895 21.80 9.36 43.94 4.17
4235 4690 1.208358 CATTGGCGTCACTGCTGTG 59.792 57.895 16.95 16.95 45.07 3.66
4236 4691 1.968017 CCATTGGCGTCACTGCTGT 60.968 57.895 1.18 0.00 34.52 4.40
4237 4692 2.872557 CCATTGGCGTCACTGCTG 59.127 61.111 1.18 0.00 34.52 4.41
4238 4693 3.058160 GCCATTGGCGTCACTGCT 61.058 61.111 12.82 0.00 39.62 4.24
4248 4703 1.376295 GCTTTGCTTGGGCCATTGG 60.376 57.895 7.26 1.75 37.74 3.16
4249 4704 0.672401 CTGCTTTGCTTGGGCCATTG 60.672 55.000 7.26 4.66 37.74 2.82
4250 4705 1.675219 CTGCTTTGCTTGGGCCATT 59.325 52.632 7.26 0.00 37.74 3.16
4251 4706 2.951101 GCTGCTTTGCTTGGGCCAT 61.951 57.895 7.26 0.00 37.74 4.40
4252 4707 3.618750 GCTGCTTTGCTTGGGCCA 61.619 61.111 0.00 0.00 37.74 5.36
4253 4708 4.383861 GGCTGCTTTGCTTGGGCC 62.384 66.667 0.00 0.00 37.74 5.80
4254 4709 4.729856 CGGCTGCTTTGCTTGGGC 62.730 66.667 0.00 0.00 39.26 5.36
4255 4710 1.971167 TACGGCTGCTTTGCTTGGG 60.971 57.895 0.00 0.00 0.00 4.12
4256 4711 1.210155 GTACGGCTGCTTTGCTTGG 59.790 57.895 0.00 0.00 0.00 3.61
4257 4712 0.593128 AAGTACGGCTGCTTTGCTTG 59.407 50.000 0.00 0.00 0.00 4.01
4258 4713 1.318576 AAAGTACGGCTGCTTTGCTT 58.681 45.000 0.00 0.00 34.11 3.91
4259 4714 1.318576 AAAAGTACGGCTGCTTTGCT 58.681 45.000 0.00 0.00 35.40 3.91
4260 4715 2.134201 AAAAAGTACGGCTGCTTTGC 57.866 45.000 0.00 0.00 35.40 3.68
4279 4734 6.316640 TGTCGATATAAATCCGCCTTCAAAAA 59.683 34.615 0.00 0.00 0.00 1.94
4280 4735 5.818336 TGTCGATATAAATCCGCCTTCAAAA 59.182 36.000 0.00 0.00 0.00 2.44
4281 4736 5.361427 TGTCGATATAAATCCGCCTTCAAA 58.639 37.500 0.00 0.00 0.00 2.69
4282 4737 4.951254 TGTCGATATAAATCCGCCTTCAA 58.049 39.130 0.00 0.00 0.00 2.69
4283 4738 4.594123 TGTCGATATAAATCCGCCTTCA 57.406 40.909 0.00 0.00 0.00 3.02
4284 4739 5.227908 TCTTGTCGATATAAATCCGCCTTC 58.772 41.667 0.00 0.00 0.00 3.46
4285 4740 5.209818 TCTTGTCGATATAAATCCGCCTT 57.790 39.130 0.00 0.00 0.00 4.35
4286 4741 4.866508 TCTTGTCGATATAAATCCGCCT 57.133 40.909 0.00 0.00 0.00 5.52
4287 4742 5.168569 TGATCTTGTCGATATAAATCCGCC 58.831 41.667 0.00 0.00 30.84 6.13
4288 4743 5.220303 GCTGATCTTGTCGATATAAATCCGC 60.220 44.000 0.00 0.00 30.84 5.54
4289 4744 6.034363 CAGCTGATCTTGTCGATATAAATCCG 59.966 42.308 8.42 0.00 30.84 4.18
4290 4745 7.093354 TCAGCTGATCTTGTCGATATAAATCC 58.907 38.462 13.74 0.00 30.84 3.01
4291 4746 8.526218 TTCAGCTGATCTTGTCGATATAAATC 57.474 34.615 19.04 0.00 30.84 2.17
4292 4747 8.768955 GTTTCAGCTGATCTTGTCGATATAAAT 58.231 33.333 19.04 0.00 30.84 1.40
4293 4748 7.043391 CGTTTCAGCTGATCTTGTCGATATAAA 60.043 37.037 19.04 0.00 30.84 1.40
4294 4749 6.417930 CGTTTCAGCTGATCTTGTCGATATAA 59.582 38.462 19.04 0.46 30.84 0.98
4295 4750 5.915196 CGTTTCAGCTGATCTTGTCGATATA 59.085 40.000 19.04 0.00 30.84 0.86
4296 4751 4.742167 CGTTTCAGCTGATCTTGTCGATAT 59.258 41.667 19.04 0.00 30.84 1.63
4297 4752 4.105486 CGTTTCAGCTGATCTTGTCGATA 58.895 43.478 19.04 0.00 30.84 2.92
4298 4753 2.926200 CGTTTCAGCTGATCTTGTCGAT 59.074 45.455 19.04 0.00 34.25 3.59
4299 4754 2.328473 CGTTTCAGCTGATCTTGTCGA 58.672 47.619 19.04 0.00 0.00 4.20
4300 4755 1.201855 GCGTTTCAGCTGATCTTGTCG 60.202 52.381 19.04 15.66 0.00 4.35
4301 4756 2.517321 GCGTTTCAGCTGATCTTGTC 57.483 50.000 19.04 1.45 0.00 3.18
4311 4766 4.404507 TTTGATTAGTCAGCGTTTCAGC 57.595 40.909 0.00 0.00 35.39 4.26
4312 4767 9.559958 AATTATTTTGATTAGTCAGCGTTTCAG 57.440 29.630 0.00 0.00 35.39 3.02
4327 4782 9.231297 ACGCCTATGCATACTAATTATTTTGAT 57.769 29.630 1.16 0.00 37.32 2.57
4328 4783 8.503196 CACGCCTATGCATACTAATTATTTTGA 58.497 33.333 1.16 0.00 37.32 2.69
4329 4784 7.271223 GCACGCCTATGCATACTAATTATTTTG 59.729 37.037 1.16 0.00 45.39 2.44
4330 4785 7.305474 GCACGCCTATGCATACTAATTATTTT 58.695 34.615 1.16 0.00 45.39 1.82
4331 4786 6.842163 GCACGCCTATGCATACTAATTATTT 58.158 36.000 1.16 0.00 45.39 1.40
4332 4787 6.422776 GCACGCCTATGCATACTAATTATT 57.577 37.500 1.16 0.00 45.39 1.40
4344 4799 0.734889 AAATGAGTGCACGCCTATGC 59.265 50.000 18.33 0.67 46.32 3.14
4345 4800 2.789208 CAAAATGAGTGCACGCCTATG 58.211 47.619 18.33 8.06 0.00 2.23
4346 4801 1.133025 GCAAAATGAGTGCACGCCTAT 59.867 47.619 18.33 2.72 41.80 2.57
4347 4802 0.521291 GCAAAATGAGTGCACGCCTA 59.479 50.000 18.33 0.00 41.80 3.93
4348 4803 1.286880 GCAAAATGAGTGCACGCCT 59.713 52.632 18.33 5.21 41.80 5.52
4349 4804 1.007502 TGCAAAATGAGTGCACGCC 60.008 52.632 18.33 11.43 46.76 5.68
4350 4805 4.632037 TGCAAAATGAGTGCACGC 57.368 50.000 14.25 14.25 46.76 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.