Multiple sequence alignment - TraesCS2B01G179700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G179700 chr2B 100.000 4166 0 0 1 4166 154256987 154252822 0.000000e+00 7694.0
1 TraesCS2B01G179700 chr2B 93.617 47 2 1 3238 3284 46595467 46595422 7.470000e-08 69.4
2 TraesCS2B01G179700 chr2B 97.059 34 1 0 3302 3335 521507078 521507045 1.620000e-04 58.4
3 TraesCS2B01G179700 chr2B 100.000 28 0 0 3302 3329 291611520 291611493 8.000000e-03 52.8
4 TraesCS2B01G179700 chr2D 85.559 1565 122 53 143 1640 102878304 102876777 0.000000e+00 1543.0
5 TraesCS2B01G179700 chr2D 89.952 1045 68 14 2097 3113 102876218 102875183 0.000000e+00 1314.0
6 TraesCS2B01G179700 chr2D 97.018 503 14 1 1608 2110 638083487 638082986 0.000000e+00 845.0
7 TraesCS2B01G179700 chr2D 96.223 503 19 0 1608 2110 639844402 639843900 0.000000e+00 824.0
8 TraesCS2B01G179700 chr2D 89.231 585 47 7 3587 4166 102874821 102874248 0.000000e+00 717.0
9 TraesCS2B01G179700 chr2D 98.222 225 4 0 2192 2416 101773692 101773916 1.090000e-105 394.0
10 TraesCS2B01G179700 chr2D 98.222 225 4 0 2192 2416 638082997 638082773 1.090000e-105 394.0
11 TraesCS2B01G179700 chr2D 97.561 41 1 0 3325 3365 578875109 578875149 2.080000e-08 71.3
12 TraesCS2B01G179700 chr2A 88.949 1294 74 30 395 1640 101915565 101914293 0.000000e+00 1533.0
13 TraesCS2B01G179700 chr2A 89.640 1110 64 14 2097 3182 101913735 101912653 0.000000e+00 1365.0
14 TraesCS2B01G179700 chr2A 93.598 781 31 5 3395 4166 101912652 101911882 0.000000e+00 1147.0
15 TraesCS2B01G179700 chr2A 89.881 336 19 3 73 397 101916311 101915980 6.440000e-113 418.0
16 TraesCS2B01G179700 chr6B 95.321 748 30 2 1364 2110 54552168 54551425 0.000000e+00 1182.0
17 TraesCS2B01G179700 chr6B 98.222 225 4 0 2192 2416 54551436 54551212 1.090000e-105 394.0
18 TraesCS2B01G179700 chr6B 90.741 54 3 2 3241 3293 166127581 166127633 2.080000e-08 71.3
19 TraesCS2B01G179700 chr4B 94.533 750 34 4 1362 2110 16322812 16322069 0.000000e+00 1151.0
20 TraesCS2B01G179700 chr4B 89.286 56 6 0 3309 3364 634413171 634413116 2.080000e-08 71.3
21 TraesCS2B01G179700 chr3B 93.600 750 40 3 1362 2110 12718245 12718987 0.000000e+00 1112.0
22 TraesCS2B01G179700 chr5D 96.819 503 15 1 1608 2110 281947555 281948056 0.000000e+00 839.0
23 TraesCS2B01G179700 chr5D 97.500 40 1 0 3240 3279 262513715 262513754 7.470000e-08 69.4
24 TraesCS2B01G179700 chr5D 100.000 37 0 0 3243 3279 549014009 549013973 7.470000e-08 69.4
25 TraesCS2B01G179700 chr5D 97.436 39 1 0 3241 3279 412619537 412619499 2.690000e-07 67.6
26 TraesCS2B01G179700 chr7D 96.223 503 19 0 1608 2110 135721257 135720755 0.000000e+00 824.0
27 TraesCS2B01G179700 chr7D 98.222 225 4 0 2192 2416 569997968 569997744 1.090000e-105 394.0
28 TraesCS2B01G179700 chr7D 92.500 40 3 0 3302 3341 480400486 480400447 1.620000e-04 58.4
29 TraesCS2B01G179700 chr3D 96.223 503 19 0 1608 2110 26600064 26599562 0.000000e+00 824.0
30 TraesCS2B01G179700 chr3D 96.223 503 19 0 1608 2110 578758224 578757722 0.000000e+00 824.0
31 TraesCS2B01G179700 chr3D 98.667 225 3 0 2192 2416 578757733 578757509 2.330000e-107 399.0
32 TraesCS2B01G179700 chr3D 88.136 59 5 2 3306 3362 351117004 351117062 7.470000e-08 69.4
33 TraesCS2B01G179700 chr6D 98.222 225 4 0 2192 2416 244144904 244145128 1.090000e-105 394.0
34 TraesCS2B01G179700 chr6D 97.436 39 1 0 3241 3279 355872715 355872677 2.690000e-07 67.6
35 TraesCS2B01G179700 chr1D 98.222 225 4 0 2192 2416 206222345 206222121 1.090000e-105 394.0
36 TraesCS2B01G179700 chr1B 96.429 56 2 0 3309 3364 41091045 41090990 4.430000e-15 93.5
37 TraesCS2B01G179700 chr1B 82.558 86 10 4 3243 3325 599223975 599224058 2.080000e-08 71.3
38 TraesCS2B01G179700 chr1B 88.462 52 4 2 3228 3279 334316089 334316040 1.250000e-05 62.1
39 TraesCS2B01G179700 chr1B 90.476 42 4 0 724 765 214531531 214531572 5.820000e-04 56.5
40 TraesCS2B01G179700 chr5B 91.071 56 5 0 3309 3364 216649371 216649426 4.470000e-10 76.8
41 TraesCS2B01G179700 chr5B 85.714 63 9 0 3302 3364 440026166 440026228 2.690000e-07 67.6
42 TraesCS2B01G179700 chr5B 90.000 50 3 2 3243 3292 286700743 286700696 3.480000e-06 63.9
43 TraesCS2B01G179700 chr7A 95.455 44 2 0 3325 3368 2585167 2585210 2.080000e-08 71.3
44 TraesCS2B01G179700 chr6A 97.561 41 1 0 3327 3367 447635254 447635294 2.080000e-08 71.3
45 TraesCS2B01G179700 chr7B 97.500 40 1 0 3325 3364 198993002 198993041 7.470000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G179700 chr2B 154252822 154256987 4165 True 7694.000000 7694 100.000000 1 4166 1 chr2B.!!$R2 4165
1 TraesCS2B01G179700 chr2D 102874248 102878304 4056 True 1191.333333 1543 88.247333 143 4166 3 chr2D.!!$R2 4023
2 TraesCS2B01G179700 chr2D 639843900 639844402 502 True 824.000000 824 96.223000 1608 2110 1 chr2D.!!$R1 502
3 TraesCS2B01G179700 chr2D 638082773 638083487 714 True 619.500000 845 97.620000 1608 2416 2 chr2D.!!$R3 808
4 TraesCS2B01G179700 chr2A 101911882 101916311 4429 True 1115.750000 1533 90.517000 73 4166 4 chr2A.!!$R1 4093
5 TraesCS2B01G179700 chr6B 54551212 54552168 956 True 788.000000 1182 96.771500 1364 2416 2 chr6B.!!$R1 1052
6 TraesCS2B01G179700 chr4B 16322069 16322812 743 True 1151.000000 1151 94.533000 1362 2110 1 chr4B.!!$R1 748
7 TraesCS2B01G179700 chr3B 12718245 12718987 742 False 1112.000000 1112 93.600000 1362 2110 1 chr3B.!!$F1 748
8 TraesCS2B01G179700 chr5D 281947555 281948056 501 False 839.000000 839 96.819000 1608 2110 1 chr5D.!!$F2 502
9 TraesCS2B01G179700 chr7D 135720755 135721257 502 True 824.000000 824 96.223000 1608 2110 1 chr7D.!!$R1 502
10 TraesCS2B01G179700 chr3D 26599562 26600064 502 True 824.000000 824 96.223000 1608 2110 1 chr3D.!!$R1 502
11 TraesCS2B01G179700 chr3D 578757509 578758224 715 True 611.500000 824 97.445000 1608 2416 2 chr3D.!!$R2 808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 960 0.119155 TCCCACAACTCCTCCTCCAT 59.881 55.0 0.0 0.0 0.0 3.41 F
978 1460 0.887836 AAAGCCCCTTCGTTTCGTCC 60.888 55.0 0.0 0.0 0.0 4.79 F
2556 3312 0.539518 ACGCAGCATACATACACCCA 59.460 50.0 0.0 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1349 1833 1.004440 GGACTGCGCAAGAGAAGGT 60.004 57.895 13.05 3.16 43.02 3.50 R
2577 3333 1.402259 ACTCTATCGACGAGCACAAGG 59.598 52.381 12.16 0.00 31.71 3.61 R
3855 4717 0.541392 ATGTTGCAGCGTAGGATGGA 59.459 50.000 2.53 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.656040 TTAATCAAACATTTCAAATCATCCCAG 57.344 29.630 0.00 0.00 0.00 4.45
41 42 6.914654 TCAAACATTTCAAATCATCCCAGA 57.085 33.333 0.00 0.00 0.00 3.86
42 43 6.927416 TCAAACATTTCAAATCATCCCAGAG 58.073 36.000 0.00 0.00 0.00 3.35
43 44 6.494491 TCAAACATTTCAAATCATCCCAGAGT 59.506 34.615 0.00 0.00 0.00 3.24
44 45 5.909621 ACATTTCAAATCATCCCAGAGTG 57.090 39.130 0.00 0.00 0.00 3.51
45 46 5.327732 ACATTTCAAATCATCCCAGAGTGT 58.672 37.500 0.00 0.00 0.00 3.55
46 47 5.776716 ACATTTCAAATCATCCCAGAGTGTT 59.223 36.000 0.00 0.00 0.00 3.32
47 48 5.710513 TTTCAAATCATCCCAGAGTGTTG 57.289 39.130 0.00 0.00 0.00 3.33
48 49 4.371624 TCAAATCATCCCAGAGTGTTGT 57.628 40.909 0.00 0.00 0.00 3.32
49 50 4.728772 TCAAATCATCCCAGAGTGTTGTT 58.271 39.130 0.00 0.00 0.00 2.83
50 51 5.139727 TCAAATCATCCCAGAGTGTTGTTT 58.860 37.500 0.00 0.00 0.00 2.83
51 52 5.598005 TCAAATCATCCCAGAGTGTTGTTTT 59.402 36.000 0.00 0.00 0.00 2.43
52 53 6.098124 TCAAATCATCCCAGAGTGTTGTTTTT 59.902 34.615 0.00 0.00 0.00 1.94
53 54 5.712152 ATCATCCCAGAGTGTTGTTTTTC 57.288 39.130 0.00 0.00 0.00 2.29
54 55 3.888930 TCATCCCAGAGTGTTGTTTTTCC 59.111 43.478 0.00 0.00 0.00 3.13
55 56 3.662759 TCCCAGAGTGTTGTTTTTCCT 57.337 42.857 0.00 0.00 0.00 3.36
56 57 3.976015 TCCCAGAGTGTTGTTTTTCCTT 58.024 40.909 0.00 0.00 0.00 3.36
57 58 3.951680 TCCCAGAGTGTTGTTTTTCCTTC 59.048 43.478 0.00 0.00 0.00 3.46
58 59 3.068165 CCCAGAGTGTTGTTTTTCCTTCC 59.932 47.826 0.00 0.00 0.00 3.46
59 60 3.954258 CCAGAGTGTTGTTTTTCCTTCCT 59.046 43.478 0.00 0.00 0.00 3.36
60 61 4.402474 CCAGAGTGTTGTTTTTCCTTCCTT 59.598 41.667 0.00 0.00 0.00 3.36
61 62 5.105351 CCAGAGTGTTGTTTTTCCTTCCTTT 60.105 40.000 0.00 0.00 0.00 3.11
62 63 6.398095 CAGAGTGTTGTTTTTCCTTCCTTTT 58.602 36.000 0.00 0.00 0.00 2.27
63 64 6.873605 CAGAGTGTTGTTTTTCCTTCCTTTTT 59.126 34.615 0.00 0.00 0.00 1.94
97 98 1.899814 TGATACCTTCACTCGGTGCTT 59.100 47.619 0.00 0.00 35.98 3.91
98 99 2.094182 TGATACCTTCACTCGGTGCTTC 60.094 50.000 0.00 0.00 35.98 3.86
99 100 0.606604 TACCTTCACTCGGTGCTTCC 59.393 55.000 0.00 0.00 35.98 3.46
113 114 0.868406 GCTTCCGAACAACCACTCTG 59.132 55.000 0.00 0.00 0.00 3.35
114 115 0.868406 CTTCCGAACAACCACTCTGC 59.132 55.000 0.00 0.00 0.00 4.26
132 133 1.287425 GCCGTCTGTGGTATGTTAGC 58.713 55.000 0.00 0.00 0.00 3.09
164 176 5.059833 CCTACTTCAATCCCACTGAATAGC 58.940 45.833 0.00 0.00 32.53 2.97
172 184 0.543277 CCACTGAATAGCTGCCTCCA 59.457 55.000 0.00 0.00 0.00 3.86
176 188 0.253044 TGAATAGCTGCCTCCACCAC 59.747 55.000 0.00 0.00 0.00 4.16
181 193 0.618680 AGCTGCCTCCACCACTATCA 60.619 55.000 0.00 0.00 0.00 2.15
224 236 8.103305 TCTCAAGCTCTCCTTATATTGTGTTTT 58.897 33.333 0.00 0.00 31.00 2.43
298 310 1.271856 TTCTTGAGGCGGGTGTCATA 58.728 50.000 0.00 0.00 0.00 2.15
322 334 4.263025 GCCTTGATCAAACATCCCCTTTTT 60.263 41.667 9.88 0.00 0.00 1.94
350 362 2.265589 AGTCAAAAGTGTTACCCCGG 57.734 50.000 0.00 0.00 0.00 5.73
355 367 3.562732 AAGTGTTACCCCGGCCAGC 62.563 63.158 2.24 0.00 0.00 4.85
365 377 2.815945 CCGGCCAGCCTCAGATCAT 61.816 63.158 2.24 0.00 0.00 2.45
381 393 4.155462 CAGATCATCCACCAAGTGTCTTTG 59.845 45.833 0.00 0.00 0.00 2.77
386 398 1.750778 CCACCAAGTGTCTTTGTTGCT 59.249 47.619 0.00 0.00 0.00 3.91
391 403 4.096382 ACCAAGTGTCTTTGTTGCTACTTG 59.904 41.667 0.00 0.00 42.64 3.16
397 409 6.770785 AGTGTCTTTGTTGCTACTTGGATTAA 59.229 34.615 0.00 0.00 0.00 1.40
402 414 8.303876 TCTTTGTTGCTACTTGGATTAATTTCC 58.696 33.333 0.00 0.00 36.24 3.13
405 417 7.406916 TGTTGCTACTTGGATTAATTTCCCTA 58.593 34.615 0.00 0.00 34.67 3.53
530 960 0.119155 TCCCACAACTCCTCCTCCAT 59.881 55.000 0.00 0.00 0.00 3.41
557 992 4.508047 GGATGGGTATCATGCATTCCTCTT 60.508 45.833 0.00 0.00 42.79 2.85
651 1090 9.775854 CTCTATGATTGAAGTGGAATTCTACAT 57.224 33.333 22.20 11.84 0.00 2.29
699 1139 2.825086 AAGAGTGTTTTGTCGCACAC 57.175 45.000 0.00 0.00 43.17 3.82
700 1140 1.732941 AGAGTGTTTTGTCGCACACA 58.267 45.000 5.65 0.00 44.94 3.72
803 1247 4.420522 AAAAACCAGTCATGCAAACCAT 57.579 36.364 0.00 0.00 33.39 3.55
807 1251 6.849085 AAACCAGTCATGCAAACCATAATA 57.151 33.333 0.00 0.00 31.47 0.98
808 1252 7.422465 AAACCAGTCATGCAAACCATAATAT 57.578 32.000 0.00 0.00 31.47 1.28
809 1253 6.395426 ACCAGTCATGCAAACCATAATATG 57.605 37.500 0.00 0.00 31.47 1.78
810 1254 6.128486 ACCAGTCATGCAAACCATAATATGA 58.872 36.000 1.10 0.00 31.47 2.15
814 1296 8.810427 CAGTCATGCAAACCATAATATGAAAAC 58.190 33.333 1.10 0.00 31.47 2.43
847 1329 5.530915 TGAATCAAAGGGGCGTATTCATAAG 59.469 40.000 0.00 0.00 32.99 1.73
848 1330 3.815809 TCAAAGGGGCGTATTCATAAGG 58.184 45.455 0.00 0.00 0.00 2.69
849 1331 2.884639 CAAAGGGGCGTATTCATAAGGG 59.115 50.000 0.00 0.00 0.00 3.95
850 1332 1.815757 AGGGGCGTATTCATAAGGGT 58.184 50.000 0.00 0.00 0.00 4.34
851 1333 2.132686 AGGGGCGTATTCATAAGGGTT 58.867 47.619 0.00 0.00 0.00 4.11
852 1334 2.512476 AGGGGCGTATTCATAAGGGTTT 59.488 45.455 0.00 0.00 0.00 3.27
853 1335 3.053170 AGGGGCGTATTCATAAGGGTTTT 60.053 43.478 0.00 0.00 0.00 2.43
859 1341 7.148035 GGGCGTATTCATAAGGGTTTTTCTTTA 60.148 37.037 0.00 0.00 0.00 1.85
898 1380 1.078001 CGAAAATACGGGGCCAGGT 60.078 57.895 4.39 6.67 0.00 4.00
978 1460 0.887836 AAAGCCCCTTCGTTTCGTCC 60.888 55.000 0.00 0.00 0.00 4.79
1005 1488 2.513897 GCCCCATTCCGACCGAAG 60.514 66.667 0.00 0.00 32.78 3.79
1029 1512 1.033746 CGACTCCGGTAGCCAGGTAA 61.034 60.000 0.00 0.00 0.00 2.85
1223 1706 2.905880 TAGCCGAGTAGCCCGAGC 60.906 66.667 0.00 0.00 40.32 5.03
1269 1752 2.043604 CTGCAGATATCCCCGTGCCA 62.044 60.000 8.42 1.31 34.91 4.92
1308 1791 3.450115 GAGGACACCGAGGACCCG 61.450 72.222 0.00 0.00 0.00 5.28
1349 1833 1.414158 CTCCGCCTCCCTTTCTATCA 58.586 55.000 0.00 0.00 0.00 2.15
1357 1841 4.294347 CCTCCCTTTCTATCACCTTCTCT 58.706 47.826 0.00 0.00 0.00 3.10
1480 1988 3.117171 GCACAGCCACAGAGCTCG 61.117 66.667 8.37 6.04 42.61 5.03
1521 2031 7.013846 AGGTTAATTTGTGCAACTAAACTGCTA 59.986 33.333 0.00 0.00 40.59 3.49
1522 2032 7.114388 GGTTAATTTGTGCAACTAAACTGCTAC 59.886 37.037 0.00 0.00 40.59 3.58
1523 2033 6.391227 AATTTGTGCAACTAAACTGCTACT 57.609 33.333 0.00 0.00 40.59 2.57
1614 2128 1.599542 CGCTGCTAGTTAGGGAAATGC 59.400 52.381 0.00 0.00 0.00 3.56
1649 2163 6.013032 AGGGCATCTTACTGATTATATGCTGT 60.013 38.462 0.00 0.00 39.64 4.40
1672 2186 3.243201 GGCTGCTAGTTATGGAAATGTGC 60.243 47.826 0.00 0.00 0.00 4.57
1681 2195 1.080569 GGAAATGTGCCTGGTTGCG 60.081 57.895 0.00 0.00 0.00 4.85
2121 2868 3.911868 TGCAATTTCAAATTGTCTCCCG 58.088 40.909 21.35 0.00 0.00 5.14
2124 2871 4.485163 CAATTTCAAATTGTCTCCCGGTC 58.515 43.478 13.89 0.00 0.00 4.79
2135 2882 5.890424 TGTCTCCCGGTCATAAAATTTTC 57.110 39.130 6.72 0.00 0.00 2.29
2175 2922 6.766467 TCTTTACTCTTTGAGGAAACTTGGAC 59.234 38.462 1.21 0.00 44.43 4.02
2201 2948 7.043656 CCGTAAAAACACCTTGAACTCAATTTC 60.044 37.037 0.00 0.00 35.02 2.17
2202 2949 7.486551 CGTAAAAACACCTTGAACTCAATTTCA 59.513 33.333 0.00 0.00 35.02 2.69
2252 2999 4.207891 AGGCATAAGTAACACTCCACTG 57.792 45.455 0.00 0.00 0.00 3.66
2270 3017 4.438336 CCACTGCATTTCTGAGCAATACAG 60.438 45.833 3.93 3.93 40.73 2.74
2556 3312 0.539518 ACGCAGCATACATACACCCA 59.460 50.000 0.00 0.00 0.00 4.51
2590 3346 1.659098 GGATAAACCTTGTGCTCGTCG 59.341 52.381 0.00 0.00 35.41 5.12
2593 3349 2.736144 AAACCTTGTGCTCGTCGATA 57.264 45.000 0.00 0.00 0.00 2.92
2594 3350 2.279582 AACCTTGTGCTCGTCGATAG 57.720 50.000 0.00 0.00 0.00 2.08
2689 3453 6.043012 AGCATCTTCTTGGCTAGATACTGAAT 59.957 38.462 0.00 0.00 35.82 2.57
2787 3551 1.134128 TGAACTGCAGTGCTTCAAGGA 60.134 47.619 25.34 0.07 0.00 3.36
2829 3607 2.881352 GAGCTGCACGGCGTACTC 60.881 66.667 14.22 13.62 37.29 2.59
2867 3645 5.505181 AATCCAGTGGATGAACTAGTGTT 57.495 39.130 25.51 3.41 42.27 3.32
2877 3655 3.717707 TGAACTAGTGTTGTGTCTCTGC 58.282 45.455 0.00 0.00 36.39 4.26
2931 3720 4.011966 TGCTCCAGATATTGGTAGCATG 57.988 45.455 16.98 0.00 46.16 4.06
2932 3721 3.647590 TGCTCCAGATATTGGTAGCATGA 59.352 43.478 16.98 0.00 46.16 3.07
2933 3722 4.287845 TGCTCCAGATATTGGTAGCATGAT 59.712 41.667 16.98 0.00 46.16 2.45
2934 3723 5.802173 TGCTCCAGATATTGGTAGCATGATG 60.802 44.000 16.98 0.00 46.16 3.07
2935 3724 7.934773 TGCTCCAGATATTGGTAGCATGATGA 61.935 42.308 16.98 0.00 46.16 2.92
2936 3725 9.165876 TGCTCCAGATATTGGTAGCATGATGAT 62.166 40.741 16.98 0.00 46.16 2.45
2937 3726 6.679327 CCAGATATTGGTAGCATGATGATG 57.321 41.667 0.00 0.00 42.41 3.07
2938 3727 5.589050 CCAGATATTGGTAGCATGATGATGG 59.411 44.000 0.00 0.00 42.41 3.51
2939 3728 6.412214 CAGATATTGGTAGCATGATGATGGA 58.588 40.000 0.00 0.00 0.00 3.41
2940 3729 6.882678 CAGATATTGGTAGCATGATGATGGAA 59.117 38.462 0.00 0.00 0.00 3.53
3113 3906 5.510179 CCAGTTCAGCTTGGAATGTTTGAAT 60.510 40.000 0.00 0.00 0.00 2.57
3114 3907 6.294675 CCAGTTCAGCTTGGAATGTTTGAATA 60.295 38.462 0.00 0.00 0.00 1.75
3116 3909 7.652909 CAGTTCAGCTTGGAATGTTTGAATAAA 59.347 33.333 0.00 0.00 0.00 1.40
3118 3911 6.690530 TCAGCTTGGAATGTTTGAATAAAGG 58.309 36.000 0.00 0.00 0.00 3.11
3119 3912 5.870978 CAGCTTGGAATGTTTGAATAAAGGG 59.129 40.000 0.00 0.00 0.00 3.95
3120 3913 4.631377 GCTTGGAATGTTTGAATAAAGGGC 59.369 41.667 0.00 0.00 0.00 5.19
3121 3914 5.569428 GCTTGGAATGTTTGAATAAAGGGCT 60.569 40.000 0.00 0.00 0.00 5.19
3123 3916 4.157656 TGGAATGTTTGAATAAAGGGCTCG 59.842 41.667 0.00 0.00 0.00 5.03
3124 3917 3.782889 ATGTTTGAATAAAGGGCTCGC 57.217 42.857 0.00 0.00 0.00 5.03
3125 3918 1.816224 TGTTTGAATAAAGGGCTCGCC 59.184 47.619 0.00 0.00 0.00 5.54
3189 4009 4.385825 TGGTAAGGTCACAGTTTGATCAC 58.614 43.478 0.00 0.00 37.89 3.06
3190 4010 4.141597 TGGTAAGGTCACAGTTTGATCACA 60.142 41.667 0.00 0.00 37.89 3.58
3193 4013 3.206150 AGGTCACAGTTTGATCACACAC 58.794 45.455 14.19 3.59 37.89 3.82
3199 4019 6.257849 GTCACAGTTTGATCACACACTTCTTA 59.742 38.462 14.19 0.00 35.24 2.10
3204 4024 7.852945 CAGTTTGATCACACACTTCTTAAACTC 59.147 37.037 14.19 0.00 35.24 3.01
3206 4026 5.838529 TGATCACACACTTCTTAAACTCGA 58.161 37.500 0.00 0.00 0.00 4.04
3210 4030 6.768078 TCACACACTTCTTAAACTCGAAAAC 58.232 36.000 0.00 0.00 0.00 2.43
3211 4031 6.369340 TCACACACTTCTTAAACTCGAAAACA 59.631 34.615 0.00 0.00 0.00 2.83
3212 4032 6.464834 CACACACTTCTTAAACTCGAAAACAC 59.535 38.462 0.00 0.00 0.00 3.32
3213 4033 6.370718 ACACACTTCTTAAACTCGAAAACACT 59.629 34.615 0.00 0.00 0.00 3.55
3214 4034 7.094933 ACACACTTCTTAAACTCGAAAACACTT 60.095 33.333 0.00 0.00 0.00 3.16
3215 4035 7.216317 CACACTTCTTAAACTCGAAAACACTTG 59.784 37.037 0.00 0.00 0.00 3.16
3216 4036 7.118680 ACACTTCTTAAACTCGAAAACACTTGA 59.881 33.333 0.00 0.00 0.00 3.02
3217 4037 7.960738 CACTTCTTAAACTCGAAAACACTTGAA 59.039 33.333 0.00 0.00 0.00 2.69
3218 4038 7.961283 ACTTCTTAAACTCGAAAACACTTGAAC 59.039 33.333 0.00 0.00 0.00 3.18
3219 4039 7.605410 TCTTAAACTCGAAAACACTTGAACT 57.395 32.000 0.00 0.00 0.00 3.01
3220 4040 8.036273 TCTTAAACTCGAAAACACTTGAACTT 57.964 30.769 0.00 0.00 0.00 2.66
3221 4041 8.508875 TCTTAAACTCGAAAACACTTGAACTTT 58.491 29.630 0.00 0.00 0.00 2.66
3222 4042 9.763465 CTTAAACTCGAAAACACTTGAACTTTA 57.237 29.630 0.00 0.00 0.00 1.85
3223 4043 9.763465 TTAAACTCGAAAACACTTGAACTTTAG 57.237 29.630 0.00 0.00 0.00 1.85
3224 4044 6.980051 ACTCGAAAACACTTGAACTTTAGT 57.020 33.333 0.00 0.00 0.00 2.24
3225 4045 8.483307 AACTCGAAAACACTTGAACTTTAGTA 57.517 30.769 0.00 0.00 0.00 1.82
3226 4046 7.903062 ACTCGAAAACACTTGAACTTTAGTAC 58.097 34.615 0.00 0.00 0.00 2.73
3227 4047 7.546667 ACTCGAAAACACTTGAACTTTAGTACA 59.453 33.333 0.00 0.00 0.00 2.90
3228 4048 7.678226 TCGAAAACACTTGAACTTTAGTACAC 58.322 34.615 0.00 0.00 0.00 2.90
3229 4049 6.903479 CGAAAACACTTGAACTTTAGTACACC 59.097 38.462 0.00 0.00 0.00 4.16
3230 4050 7.201582 CGAAAACACTTGAACTTTAGTACACCT 60.202 37.037 0.00 0.00 0.00 4.00
3231 4051 7.933215 AAACACTTGAACTTTAGTACACCTT 57.067 32.000 0.00 0.00 0.00 3.50
3232 4052 7.933215 AACACTTGAACTTTAGTACACCTTT 57.067 32.000 0.00 0.00 0.00 3.11
3233 4053 7.316544 ACACTTGAACTTTAGTACACCTTTG 57.683 36.000 0.00 0.00 0.00 2.77
3234 4054 6.882678 ACACTTGAACTTTAGTACACCTTTGT 59.117 34.615 0.00 0.00 40.02 2.83
3235 4055 8.042515 ACACTTGAACTTTAGTACACCTTTGTA 58.957 33.333 0.00 0.00 37.15 2.41
3255 4075 2.087646 ACGTTAGTACTTCCTCCGTCC 58.912 52.381 0.00 0.00 0.00 4.79
3256 4076 1.403323 CGTTAGTACTTCCTCCGTCCC 59.597 57.143 0.00 0.00 0.00 4.46
3257 4077 2.450476 GTTAGTACTTCCTCCGTCCCA 58.550 52.381 0.00 0.00 0.00 4.37
3258 4078 2.827921 GTTAGTACTTCCTCCGTCCCAA 59.172 50.000 0.00 0.00 0.00 4.12
3259 4079 2.019807 AGTACTTCCTCCGTCCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
3260 4080 2.332117 AGTACTTCCTCCGTCCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
3261 4081 2.910977 AGTACTTCCTCCGTCCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
3262 4082 4.098894 AGTACTTCCTCCGTCCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
3263 4083 4.533311 AGTACTTCCTCCGTCCCAAAATAA 59.467 41.667 0.00 0.00 0.00 1.40
3264 4084 3.951663 ACTTCCTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
3265 4085 3.329814 ACTTCCTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
3266 4086 3.343941 TCCTCCGTCCCAAAATAAGTG 57.656 47.619 0.00 0.00 0.00 3.16
3267 4087 2.640826 TCCTCCGTCCCAAAATAAGTGT 59.359 45.455 0.00 0.00 0.00 3.55
3268 4088 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3269 4089 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3270 4090 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3271 4091 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
3272 4092 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
3273 4093 4.083484 CCGTCCCAAAATAAGTGTCTTGAC 60.083 45.833 0.00 0.00 0.00 3.18
3274 4094 4.083484 CGTCCCAAAATAAGTGTCTTGACC 60.083 45.833 0.00 0.00 0.00 4.02
3275 4095 5.070685 GTCCCAAAATAAGTGTCTTGACCT 58.929 41.667 0.00 0.00 0.00 3.85
3276 4096 5.535030 GTCCCAAAATAAGTGTCTTGACCTT 59.465 40.000 0.00 4.52 0.00 3.50
3277 4097 6.713450 GTCCCAAAATAAGTGTCTTGACCTTA 59.287 38.462 11.29 11.29 0.00 2.69
3278 4098 6.940298 TCCCAAAATAAGTGTCTTGACCTTAG 59.060 38.462 13.13 0.00 0.00 2.18
3279 4099 6.151144 CCCAAAATAAGTGTCTTGACCTTAGG 59.849 42.308 0.00 0.00 0.00 2.69
3280 4100 6.151144 CCAAAATAAGTGTCTTGACCTTAGGG 59.849 42.308 2.32 0.00 38.88 3.53
3281 4101 6.697641 AAATAAGTGTCTTGACCTTAGGGA 57.302 37.500 2.32 0.00 36.25 4.20
3282 4102 5.678955 ATAAGTGTCTTGACCTTAGGGAC 57.321 43.478 2.32 0.65 36.25 4.46
3283 4103 2.972348 AGTGTCTTGACCTTAGGGACA 58.028 47.619 2.32 3.54 35.65 4.02
3284 4104 3.041508 GTGTCTTGACCTTAGGGACAC 57.958 52.381 17.94 17.94 45.90 3.67
3285 4105 2.972348 TGTCTTGACCTTAGGGACACT 58.028 47.619 2.32 0.00 37.04 3.55
3286 4106 3.314693 TGTCTTGACCTTAGGGACACTT 58.685 45.455 2.32 0.00 37.04 3.16
3287 4107 4.485875 TGTCTTGACCTTAGGGACACTTA 58.514 43.478 2.32 0.00 37.04 2.24
3288 4108 5.091552 TGTCTTGACCTTAGGGACACTTAT 58.908 41.667 2.32 0.00 37.04 1.73
3289 4109 5.187186 TGTCTTGACCTTAGGGACACTTATC 59.813 44.000 2.32 0.00 37.04 1.75
3290 4110 5.422650 GTCTTGACCTTAGGGACACTTATCT 59.577 44.000 2.32 0.00 37.04 1.98
3291 4111 6.023603 TCTTGACCTTAGGGACACTTATCTT 58.976 40.000 2.32 0.00 37.04 2.40
3292 4112 5.677319 TGACCTTAGGGACACTTATCTTG 57.323 43.478 2.32 0.00 32.77 3.02
3293 4113 5.338632 TGACCTTAGGGACACTTATCTTGA 58.661 41.667 2.32 0.00 32.77 3.02
3294 4114 5.187186 TGACCTTAGGGACACTTATCTTGAC 59.813 44.000 2.32 0.00 32.77 3.18
3295 4115 4.470304 ACCTTAGGGACACTTATCTTGACC 59.530 45.833 2.32 0.00 36.25 4.02
3296 4116 4.717280 CCTTAGGGACACTTATCTTGACCT 59.283 45.833 0.00 0.00 33.58 3.85
3297 4117 5.189934 CCTTAGGGACACTTATCTTGACCTT 59.810 44.000 0.00 0.00 33.58 3.50
3298 4118 6.383147 CCTTAGGGACACTTATCTTGACCTTA 59.617 42.308 0.00 0.00 33.58 2.69
3299 4119 5.941555 AGGGACACTTATCTTGACCTTAG 57.058 43.478 0.00 0.00 0.00 2.18
3300 4120 4.717280 AGGGACACTTATCTTGACCTTAGG 59.283 45.833 0.00 0.00 0.00 2.69
3301 4121 4.141688 GGGACACTTATCTTGACCTTAGGG 60.142 50.000 2.32 0.00 38.88 3.53
3302 4122 4.715297 GGACACTTATCTTGACCTTAGGGA 59.285 45.833 2.32 0.00 36.25 4.20
3303 4123 5.395435 GGACACTTATCTTGACCTTAGGGAC 60.395 48.000 2.32 0.00 36.25 4.46
3304 4124 5.091552 ACACTTATCTTGACCTTAGGGACA 58.908 41.667 2.32 0.00 35.65 4.02
3305 4125 5.046520 ACACTTATCTTGACCTTAGGGACAC 60.047 44.000 2.32 0.00 37.04 3.67
3306 4126 5.187967 CACTTATCTTGACCTTAGGGACACT 59.812 44.000 2.32 0.00 37.04 3.55
3307 4127 5.785940 ACTTATCTTGACCTTAGGGACACTT 59.214 40.000 2.32 0.00 37.04 3.16
3308 4128 6.958192 ACTTATCTTGACCTTAGGGACACTTA 59.042 38.462 2.32 0.00 37.04 2.24
3309 4129 7.624077 ACTTATCTTGACCTTAGGGACACTTAT 59.376 37.037 2.32 0.00 37.04 1.73
3310 4130 6.893020 ATCTTGACCTTAGGGACACTTATT 57.107 37.500 2.32 0.00 37.04 1.40
3311 4131 6.697641 TCTTGACCTTAGGGACACTTATTT 57.302 37.500 2.32 0.00 37.04 1.40
3312 4132 7.086685 TCTTGACCTTAGGGACACTTATTTT 57.913 36.000 2.32 0.00 37.04 1.82
3313 4133 6.940298 TCTTGACCTTAGGGACACTTATTTTG 59.060 38.462 2.32 0.00 37.04 2.44
3314 4134 5.566469 TGACCTTAGGGACACTTATTTTGG 58.434 41.667 2.32 0.00 32.77 3.28
3315 4135 4.930696 ACCTTAGGGACACTTATTTTGGG 58.069 43.478 2.32 0.00 36.25 4.12
3316 4136 4.604490 ACCTTAGGGACACTTATTTTGGGA 59.396 41.667 2.32 0.00 36.25 4.37
3317 4137 4.948004 CCTTAGGGACACTTATTTTGGGAC 59.052 45.833 0.00 0.00 33.58 4.46
3318 4138 3.067684 AGGGACACTTATTTTGGGACG 57.932 47.619 0.00 0.00 0.00 4.79
3319 4139 2.640826 AGGGACACTTATTTTGGGACGA 59.359 45.455 0.00 0.00 0.00 4.20
3320 4140 3.073356 AGGGACACTTATTTTGGGACGAA 59.927 43.478 0.00 0.00 0.00 3.85
3321 4141 3.439129 GGGACACTTATTTTGGGACGAAG 59.561 47.826 0.00 0.00 0.00 3.79
3322 4142 3.439129 GGACACTTATTTTGGGACGAAGG 59.561 47.826 0.00 0.00 0.00 3.46
3323 4143 3.418047 ACACTTATTTTGGGACGAAGGG 58.582 45.455 0.00 0.00 0.00 3.95
3324 4144 3.073356 ACACTTATTTTGGGACGAAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
3325 4145 3.689649 CACTTATTTTGGGACGAAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
3326 4146 3.329814 ACTTATTTTGGGACGAAGGGAGT 59.670 43.478 0.00 0.00 0.00 3.85
3327 4147 4.533311 ACTTATTTTGGGACGAAGGGAGTA 59.467 41.667 0.00 0.00 0.00 2.59
3328 4148 2.845363 TTTTGGGACGAAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
3329 4149 1.719529 TTTGGGACGAAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
3330 4150 1.719529 TTGGGACGAAGGGAGTACAA 58.280 50.000 0.00 0.00 0.00 2.41
3331 4151 1.719529 TGGGACGAAGGGAGTACAAA 58.280 50.000 0.00 0.00 0.00 2.83
3332 4152 1.621814 TGGGACGAAGGGAGTACAAAG 59.378 52.381 0.00 0.00 0.00 2.77
3333 4153 1.622312 GGGACGAAGGGAGTACAAAGT 59.378 52.381 0.00 0.00 0.00 2.66
3334 4154 2.038164 GGGACGAAGGGAGTACAAAGTT 59.962 50.000 0.00 0.00 0.00 2.66
3335 4155 3.064931 GGACGAAGGGAGTACAAAGTTG 58.935 50.000 0.00 0.00 0.00 3.16
3336 4156 3.243975 GGACGAAGGGAGTACAAAGTTGA 60.244 47.826 0.00 0.00 0.00 3.18
3337 4157 3.988517 GACGAAGGGAGTACAAAGTTGAG 59.011 47.826 0.00 0.00 0.00 3.02
3338 4158 3.640029 ACGAAGGGAGTACAAAGTTGAGA 59.360 43.478 0.00 0.00 0.00 3.27
3339 4159 3.988517 CGAAGGGAGTACAAAGTTGAGAC 59.011 47.826 0.00 0.00 0.00 3.36
3340 4160 4.500887 CGAAGGGAGTACAAAGTTGAGACA 60.501 45.833 0.00 0.00 0.00 3.41
3341 4161 4.338379 AGGGAGTACAAAGTTGAGACAC 57.662 45.455 0.00 0.00 0.00 3.67
3342 4162 3.967987 AGGGAGTACAAAGTTGAGACACT 59.032 43.478 0.00 0.00 0.00 3.55
3343 4163 4.409247 AGGGAGTACAAAGTTGAGACACTT 59.591 41.667 0.00 0.00 38.74 3.16
3344 4164 5.601313 AGGGAGTACAAAGTTGAGACACTTA 59.399 40.000 0.00 0.00 35.87 2.24
3345 4165 6.270231 AGGGAGTACAAAGTTGAGACACTTAT 59.730 38.462 0.00 0.00 35.87 1.73
3346 4166 6.935208 GGGAGTACAAAGTTGAGACACTTATT 59.065 38.462 0.00 0.00 35.87 1.40
3347 4167 7.444487 GGGAGTACAAAGTTGAGACACTTATTT 59.556 37.037 0.00 0.00 35.87 1.40
3348 4168 8.837389 GGAGTACAAAGTTGAGACACTTATTTT 58.163 33.333 0.00 0.00 35.87 1.82
3356 4176 9.832445 AAGTTGAGACACTTATTTTAAGACAGA 57.168 29.630 1.47 0.00 35.10 3.41
3357 4177 9.482627 AGTTGAGACACTTATTTTAAGACAGAG 57.517 33.333 1.47 0.00 0.00 3.35
3358 4178 8.713271 GTTGAGACACTTATTTTAAGACAGAGG 58.287 37.037 1.47 0.00 0.00 3.69
3359 4179 7.386851 TGAGACACTTATTTTAAGACAGAGGG 58.613 38.462 1.47 0.00 0.00 4.30
3360 4180 7.234782 TGAGACACTTATTTTAAGACAGAGGGA 59.765 37.037 1.47 0.00 0.00 4.20
3361 4181 7.616313 AGACACTTATTTTAAGACAGAGGGAG 58.384 38.462 1.47 0.00 0.00 4.30
3371 4191 8.848474 TTTAAGACAGAGGGAGTAAAATTGAG 57.152 34.615 0.00 0.00 0.00 3.02
3375 4195 6.712547 AGACAGAGGGAGTAAAATTGAGTTTG 59.287 38.462 0.00 0.00 0.00 2.93
3381 4201 7.661040 AGGGAGTAAAATTGAGTTTGACATTG 58.339 34.615 0.00 0.00 34.12 2.82
3382 4202 7.287696 AGGGAGTAAAATTGAGTTTGACATTGT 59.712 33.333 0.00 0.00 34.12 2.71
3392 4212 5.418310 AGTTTGACATTGTAAACTCCACG 57.582 39.130 13.78 0.00 41.83 4.94
3394 4214 2.839975 TGACATTGTAAACTCCACGCA 58.160 42.857 0.00 0.00 0.00 5.24
3395 4215 3.407698 TGACATTGTAAACTCCACGCAT 58.592 40.909 0.00 0.00 0.00 4.73
3398 4218 5.470437 TGACATTGTAAACTCCACGCATAAA 59.530 36.000 0.00 0.00 0.00 1.40
3444 4264 5.401376 GCCATAACTTTCCGAAAACTTTGAC 59.599 40.000 0.00 0.00 0.00 3.18
3446 4266 4.690184 AACTTTCCGAAAACTTTGACGT 57.310 36.364 0.00 0.00 0.00 4.34
3477 4297 3.058914 CACGGAAAAATATGGCGATCTCC 60.059 47.826 0.00 0.00 0.00 3.71
3483 4303 6.262273 GGAAAAATATGGCGATCTCCAACTTA 59.738 38.462 8.83 0.00 39.96 2.24
3569 4389 1.722751 CGTTCGTTCAGCATTGCAGTC 60.723 52.381 11.91 0.82 0.00 3.51
3601 4455 1.688772 AGCATCTTCATGGGCATGAC 58.311 50.000 0.00 0.00 46.49 3.06
3691 4547 4.160252 GCATCCAAAACCTGATAACCACAT 59.840 41.667 0.00 0.00 0.00 3.21
3756 4612 2.470983 TCGTGCCATTTCAGACATCA 57.529 45.000 0.00 0.00 0.00 3.07
3769 4625 5.545063 TCAGACATCAGACCACTTACAAA 57.455 39.130 0.00 0.00 0.00 2.83
3842 4698 4.582869 CGGCCTAAGGGTTTACTAAAGTT 58.417 43.478 0.00 0.00 34.45 2.66
3855 4717 9.281371 GGTTTACTAAAGTTGAAGGTTACATCT 57.719 33.333 0.00 0.00 0.00 2.90
3857 4719 9.498176 TTTACTAAAGTTGAAGGTTACATCTCC 57.502 33.333 0.00 0.00 0.00 3.71
3858 4720 7.074653 ACTAAAGTTGAAGGTTACATCTCCA 57.925 36.000 0.00 0.00 0.00 3.86
3859 4721 7.690256 ACTAAAGTTGAAGGTTACATCTCCAT 58.310 34.615 0.00 0.00 0.00 3.41
3860 4722 7.824779 ACTAAAGTTGAAGGTTACATCTCCATC 59.175 37.037 0.00 0.00 0.00 3.51
3870 4732 0.390492 CATCTCCATCCTACGCTGCA 59.610 55.000 0.00 0.00 0.00 4.41
3912 4776 5.163385 CCCAATGCCATGTCAAAGACAATAT 60.163 40.000 3.74 0.00 45.96 1.28
3918 4782 7.112122 TGCCATGTCAAAGACAATATAAGACT 58.888 34.615 3.74 0.00 45.96 3.24
3974 4838 1.071987 CAACTGCTGGAGCTCCACA 59.928 57.895 32.00 28.46 42.01 4.17
4022 4886 1.153429 GATACCCCGACGCAAGCTT 60.153 57.895 0.00 0.00 45.62 3.74
4108 4977 9.461312 TTTTAGCTGGTATAAACAGATTCACAT 57.539 29.630 9.29 0.00 38.20 3.21
4137 5007 7.711772 TCAGTTGGTTCGAGAAGTAAAACAATA 59.288 33.333 0.00 0.00 32.68 1.90
4138 5008 8.339714 CAGTTGGTTCGAGAAGTAAAACAATAA 58.660 33.333 0.00 0.00 32.68 1.40
4147 5017 8.158445 CGAGAAGTAAAACAATAAACGTCTACC 58.842 37.037 0.00 0.00 32.09 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.656040 CTGGGATGATTTGAAATGTTTGATTAA 57.344 29.630 0.00 0.00 0.00 1.40
15 16 9.033711 TCTGGGATGATTTGAAATGTTTGATTA 57.966 29.630 0.00 0.00 0.00 1.75
16 17 7.909518 TCTGGGATGATTTGAAATGTTTGATT 58.090 30.769 0.00 0.00 0.00 2.57
17 18 7.179694 ACTCTGGGATGATTTGAAATGTTTGAT 59.820 33.333 0.00 0.00 0.00 2.57
18 19 6.494491 ACTCTGGGATGATTTGAAATGTTTGA 59.506 34.615 0.00 0.00 0.00 2.69
19 20 6.588756 CACTCTGGGATGATTTGAAATGTTTG 59.411 38.462 0.00 0.00 0.00 2.93
20 21 6.268387 ACACTCTGGGATGATTTGAAATGTTT 59.732 34.615 0.00 0.00 0.00 2.83
21 22 5.776716 ACACTCTGGGATGATTTGAAATGTT 59.223 36.000 0.00 0.00 0.00 2.71
22 23 5.327732 ACACTCTGGGATGATTTGAAATGT 58.672 37.500 0.00 0.00 0.00 2.71
23 24 5.909621 ACACTCTGGGATGATTTGAAATG 57.090 39.130 0.00 0.00 0.00 2.32
24 25 5.776716 ACAACACTCTGGGATGATTTGAAAT 59.223 36.000 0.00 0.00 0.00 2.17
25 26 5.139727 ACAACACTCTGGGATGATTTGAAA 58.860 37.500 0.00 0.00 0.00 2.69
26 27 4.728772 ACAACACTCTGGGATGATTTGAA 58.271 39.130 0.00 0.00 0.00 2.69
27 28 4.371624 ACAACACTCTGGGATGATTTGA 57.628 40.909 0.00 0.00 0.00 2.69
28 29 5.458041 AAACAACACTCTGGGATGATTTG 57.542 39.130 0.00 0.00 0.00 2.32
29 30 6.462909 GGAAAAACAACACTCTGGGATGATTT 60.463 38.462 0.00 0.00 0.00 2.17
30 31 5.011023 GGAAAAACAACACTCTGGGATGATT 59.989 40.000 0.00 0.00 0.00 2.57
31 32 4.524328 GGAAAAACAACACTCTGGGATGAT 59.476 41.667 0.00 0.00 0.00 2.45
32 33 3.888930 GGAAAAACAACACTCTGGGATGA 59.111 43.478 0.00 0.00 0.00 2.92
33 34 3.891366 AGGAAAAACAACACTCTGGGATG 59.109 43.478 0.00 0.00 0.00 3.51
34 35 4.184649 AGGAAAAACAACACTCTGGGAT 57.815 40.909 0.00 0.00 0.00 3.85
35 36 3.662759 AGGAAAAACAACACTCTGGGA 57.337 42.857 0.00 0.00 0.00 4.37
36 37 3.068165 GGAAGGAAAAACAACACTCTGGG 59.932 47.826 0.00 0.00 0.00 4.45
37 38 3.954258 AGGAAGGAAAAACAACACTCTGG 59.046 43.478 0.00 0.00 0.00 3.86
38 39 5.582689 AAGGAAGGAAAAACAACACTCTG 57.417 39.130 0.00 0.00 0.00 3.35
39 40 6.605471 AAAAGGAAGGAAAAACAACACTCT 57.395 33.333 0.00 0.00 0.00 3.24
94 95 0.868406 CAGAGTGGTTGTTCGGAAGC 59.132 55.000 0.00 0.00 0.00 3.86
97 98 1.070786 GGCAGAGTGGTTGTTCGGA 59.929 57.895 0.00 0.00 0.00 4.55
98 99 2.317609 CGGCAGAGTGGTTGTTCGG 61.318 63.158 0.00 0.00 0.00 4.30
99 100 1.557443 GACGGCAGAGTGGTTGTTCG 61.557 60.000 0.00 0.00 0.00 3.95
113 114 1.287425 GCTAACATACCACAGACGGC 58.713 55.000 0.00 0.00 0.00 5.68
114 115 1.480954 AGGCTAACATACCACAGACGG 59.519 52.381 0.00 0.00 0.00 4.79
132 133 2.092375 GGATTGAAGTAGGGGGACAAGG 60.092 54.545 0.00 0.00 0.00 3.61
164 176 3.209410 GAAATGATAGTGGTGGAGGCAG 58.791 50.000 0.00 0.00 0.00 4.85
172 184 5.025453 AGCAAAATGGGAAATGATAGTGGT 58.975 37.500 0.00 0.00 0.00 4.16
176 188 7.500227 TGAGAGTAGCAAAATGGGAAATGATAG 59.500 37.037 0.00 0.00 0.00 2.08
181 193 5.105595 GCTTGAGAGTAGCAAAATGGGAAAT 60.106 40.000 0.00 0.00 38.51 2.17
224 236 4.601406 AGCCTACAATGGGGTGAAAATA 57.399 40.909 0.00 0.00 32.93 1.40
298 310 1.642762 AGGGGATGTTTGATCAAGGCT 59.357 47.619 8.41 0.00 0.00 4.58
322 334 6.319405 GGGTAACACTTTTGACTTTGGACTTA 59.681 38.462 0.00 0.00 39.74 2.24
350 362 0.534652 GTGGATGATCTGAGGCTGGC 60.535 60.000 0.00 0.00 0.00 4.85
355 367 2.238144 ACACTTGGTGGATGATCTGAGG 59.762 50.000 2.75 0.00 37.94 3.86
365 377 1.748493 GCAACAAAGACACTTGGTGGA 59.252 47.619 3.75 0.00 43.05 4.02
381 393 6.775594 AGGGAAATTAATCCAAGTAGCAAC 57.224 37.500 0.00 0.00 41.55 4.17
412 842 8.361139 CCCGACTATAACAAGATCAAGAATACT 58.639 37.037 0.00 0.00 0.00 2.12
423 853 4.646492 GGAAGGTACCCGACTATAACAAGA 59.354 45.833 8.74 0.00 0.00 3.02
429 859 2.785269 TGGAGGAAGGTACCCGACTATA 59.215 50.000 8.74 0.00 0.00 1.31
443 873 3.245622 GGGAAAGGGAAGAATTGGAGGAA 60.246 47.826 0.00 0.00 0.00 3.36
530 960 5.015497 AGGAATGCATGATACCCATCCAATA 59.985 40.000 0.00 0.00 31.94 1.90
557 992 9.905713 AAGGTCATAAATGTTTGCTCTCTAATA 57.094 29.630 0.00 0.00 0.00 0.98
621 1060 7.923344 AGAATTCCACTTCAATCATAGAGTACG 59.077 37.037 0.65 0.00 0.00 3.67
627 1066 9.551734 TCATGTAGAATTCCACTTCAATCATAG 57.448 33.333 5.61 0.00 0.00 2.23
670 1109 5.907391 CGACAAAACACTCTTTGGTCATTAC 59.093 40.000 1.57 0.00 40.03 1.89
725 1165 5.048434 GGAGAAAACTTTCCATCCACTCAAG 60.048 44.000 0.00 0.00 37.92 3.02
786 1230 6.128486 TCATATTATGGTTTGCATGACTGGT 58.872 36.000 0.00 0.00 0.00 4.00
788 1232 8.810427 GTTTTCATATTATGGTTTGCATGACTG 58.190 33.333 0.00 0.00 0.00 3.51
807 1251 9.880157 CCTTTGATTCATAGGATTTGTTTTCAT 57.120 29.630 15.80 0.00 35.14 2.57
808 1252 8.313292 CCCTTTGATTCATAGGATTTGTTTTCA 58.687 33.333 20.87 0.00 35.14 2.69
809 1253 7.765819 CCCCTTTGATTCATAGGATTTGTTTTC 59.234 37.037 20.87 0.00 35.14 2.29
810 1254 7.623630 CCCCTTTGATTCATAGGATTTGTTTT 58.376 34.615 20.87 0.00 35.14 2.43
814 1296 4.261741 CGCCCCTTTGATTCATAGGATTTG 60.262 45.833 20.87 9.81 35.14 2.32
847 1329 8.394877 CCACTTGTGAAAAATAAAGAAAAACCC 58.605 33.333 1.89 0.00 0.00 4.11
848 1330 8.394877 CCCACTTGTGAAAAATAAAGAAAAACC 58.605 33.333 1.89 0.00 0.00 3.27
849 1331 8.394877 CCCCACTTGTGAAAAATAAAGAAAAAC 58.605 33.333 1.89 0.00 0.00 2.43
850 1332 8.322091 TCCCCACTTGTGAAAAATAAAGAAAAA 58.678 29.630 1.89 0.00 0.00 1.94
851 1333 7.852263 TCCCCACTTGTGAAAAATAAAGAAAA 58.148 30.769 1.89 0.00 0.00 2.29
852 1334 7.425224 TCCCCACTTGTGAAAAATAAAGAAA 57.575 32.000 1.89 0.00 0.00 2.52
853 1335 7.523052 CGATCCCCACTTGTGAAAAATAAAGAA 60.523 37.037 1.89 0.00 0.00 2.52
859 1341 2.231235 GCGATCCCCACTTGTGAAAAAT 59.769 45.455 1.89 0.00 0.00 1.82
898 1380 1.267121 GACTGGGAACTGGCTAGTGA 58.733 55.000 2.40 0.00 37.19 3.41
978 1460 1.593265 GAATGGGGCCTGCAGTTTG 59.407 57.895 13.81 0.00 0.00 2.93
1005 1488 2.488820 GCTACCGGAGTCGTGTCC 59.511 66.667 9.46 0.00 33.95 4.02
1349 1833 1.004440 GGACTGCGCAAGAGAAGGT 60.004 57.895 13.05 3.16 43.02 3.50
1357 1841 2.108157 AAGTCACGGACTGCGCAA 59.892 55.556 13.05 0.00 42.59 4.85
1480 1988 7.502561 ACAAATTAACCTAGCATCCCAATCTAC 59.497 37.037 0.00 0.00 0.00 2.59
1614 2128 2.386661 AAGATGCCCTACAACAGACG 57.613 50.000 0.00 0.00 0.00 4.18
1649 2163 3.947196 CACATTTCCATAACTAGCAGCCA 59.053 43.478 0.00 0.00 0.00 4.75
1672 2186 1.097547 CCTAATGCCTCGCAACCAGG 61.098 60.000 0.00 0.00 43.62 4.45
2121 2868 8.863049 CAAGTATGCAGTGAAAATTTTATGACC 58.137 33.333 2.75 0.00 0.00 4.02
2164 2911 4.353737 GTGTTTTTACGGTCCAAGTTTCC 58.646 43.478 0.00 0.00 0.00 3.13
2175 2922 4.886247 TGAGTTCAAGGTGTTTTTACGG 57.114 40.909 0.00 0.00 0.00 4.02
2252 2999 4.337555 ACCATCTGTATTGCTCAGAAATGC 59.662 41.667 0.00 0.00 43.65 3.56
2270 3017 4.425577 AAAGCATTCGACTTCAACCATC 57.574 40.909 0.00 0.00 0.00 3.51
2577 3333 1.402259 ACTCTATCGACGAGCACAAGG 59.598 52.381 12.16 0.00 31.71 3.61
2701 3465 4.523943 ACACAAACCACATGACAGCATATT 59.476 37.500 0.00 0.00 32.27 1.28
2787 3551 4.279145 AGAATTCCAGCAGCATCTTGATT 58.721 39.130 0.65 0.00 0.00 2.57
2829 3607 7.824289 TCCACTGGATTTAAGAAACATCTACAG 59.176 37.037 0.00 0.00 0.00 2.74
2867 3645 2.988010 ACAGTTCAAGCAGAGACACA 57.012 45.000 0.00 0.00 0.00 3.72
2877 3655 3.187227 GCCATGACACAGTACAGTTCAAG 59.813 47.826 0.00 0.00 0.00 3.02
2927 3716 4.866508 ATGTCCAATTCCATCATCATGC 57.133 40.909 0.00 0.00 0.00 4.06
2928 3717 6.156748 ACAATGTCCAATTCCATCATCATG 57.843 37.500 0.00 0.00 0.00 3.07
2929 3718 5.894964 TGACAATGTCCAATTCCATCATCAT 59.105 36.000 11.24 0.00 0.00 2.45
2930 3719 5.262804 TGACAATGTCCAATTCCATCATCA 58.737 37.500 11.24 0.00 0.00 3.07
2931 3720 5.591472 TCTGACAATGTCCAATTCCATCATC 59.409 40.000 11.24 0.00 0.00 2.92
2932 3721 5.512298 TCTGACAATGTCCAATTCCATCAT 58.488 37.500 11.24 0.00 0.00 2.45
2933 3722 4.920999 TCTGACAATGTCCAATTCCATCA 58.079 39.130 11.24 0.00 0.00 3.07
2934 3723 5.902613 TTCTGACAATGTCCAATTCCATC 57.097 39.130 11.24 0.00 0.00 3.51
2935 3724 5.776716 AGTTTCTGACAATGTCCAATTCCAT 59.223 36.000 11.24 0.00 0.00 3.41
2936 3725 5.139727 AGTTTCTGACAATGTCCAATTCCA 58.860 37.500 11.24 0.00 0.00 3.53
2937 3726 5.712152 AGTTTCTGACAATGTCCAATTCC 57.288 39.130 11.24 0.00 0.00 3.01
2938 3727 7.672983 TCTAGTTTCTGACAATGTCCAATTC 57.327 36.000 11.24 0.00 0.00 2.17
2939 3728 8.641498 AATCTAGTTTCTGACAATGTCCAATT 57.359 30.769 11.24 1.30 0.00 2.32
2940 3729 9.911788 ATAATCTAGTTTCTGACAATGTCCAAT 57.088 29.630 11.24 0.00 0.00 3.16
3113 3906 3.712907 AAGCCGGCGAGCCCTTTA 61.713 61.111 23.20 0.00 0.00 1.85
3120 3913 4.521062 CTCTCCCAAGCCGGCGAG 62.521 72.222 23.20 21.04 34.84 5.03
3123 3916 2.034221 AAACTCTCCCAAGCCGGC 59.966 61.111 21.89 21.89 0.00 6.13
3124 3917 1.675641 CCAAACTCTCCCAAGCCGG 60.676 63.158 0.00 0.00 0.00 6.13
3125 3918 2.335712 GCCAAACTCTCCCAAGCCG 61.336 63.158 0.00 0.00 0.00 5.52
3189 4009 6.772078 AGTGTTTTCGAGTTTAAGAAGTGTG 58.228 36.000 0.00 0.00 0.00 3.82
3190 4010 6.980051 AGTGTTTTCGAGTTTAAGAAGTGT 57.020 33.333 0.00 0.00 0.00 3.55
3193 4013 8.175716 AGTTCAAGTGTTTTCGAGTTTAAGAAG 58.824 33.333 0.00 0.00 0.00 2.85
3199 4019 7.813645 ACTAAAGTTCAAGTGTTTTCGAGTTT 58.186 30.769 0.00 0.00 0.00 2.66
3204 4024 6.903479 GGTGTACTAAAGTTCAAGTGTTTTCG 59.097 38.462 0.00 0.00 0.00 3.46
3206 4026 7.933215 AGGTGTACTAAAGTTCAAGTGTTTT 57.067 32.000 0.00 0.00 0.00 2.43
3210 4030 7.316544 ACAAAGGTGTACTAAAGTTCAAGTG 57.683 36.000 0.00 0.00 35.72 3.16
3224 4044 6.490040 AGGAAGTACTAACGTACAAAGGTGTA 59.510 38.462 0.00 0.00 46.68 2.90
3225 4045 5.302823 AGGAAGTACTAACGTACAAAGGTGT 59.697 40.000 0.00 0.00 46.68 4.16
3226 4046 5.776744 AGGAAGTACTAACGTACAAAGGTG 58.223 41.667 0.00 0.00 46.68 4.00
3227 4047 5.047731 GGAGGAAGTACTAACGTACAAAGGT 60.048 44.000 0.00 0.00 46.68 3.50
3228 4048 5.405797 GGAGGAAGTACTAACGTACAAAGG 58.594 45.833 0.00 0.00 46.68 3.11
3229 4049 5.091431 CGGAGGAAGTACTAACGTACAAAG 58.909 45.833 0.00 0.00 46.68 2.77
3230 4050 4.518970 ACGGAGGAAGTACTAACGTACAAA 59.481 41.667 0.00 0.00 46.68 2.83
3231 4051 4.072131 ACGGAGGAAGTACTAACGTACAA 58.928 43.478 0.00 0.00 46.68 2.41
3232 4052 3.674997 ACGGAGGAAGTACTAACGTACA 58.325 45.455 0.00 0.00 46.68 2.90
3233 4053 3.064134 GGACGGAGGAAGTACTAACGTAC 59.936 52.174 0.00 0.02 45.04 3.67
3234 4054 3.270877 GGACGGAGGAAGTACTAACGTA 58.729 50.000 0.00 0.00 35.30 3.57
3235 4055 2.087646 GGACGGAGGAAGTACTAACGT 58.912 52.381 0.00 2.85 37.03 3.99
3236 4056 1.403323 GGGACGGAGGAAGTACTAACG 59.597 57.143 0.00 0.00 0.00 3.18
3237 4057 2.450476 TGGGACGGAGGAAGTACTAAC 58.550 52.381 0.00 0.00 0.00 2.34
3238 4058 2.905415 TGGGACGGAGGAAGTACTAA 57.095 50.000 0.00 0.00 0.00 2.24
3239 4059 2.905415 TTGGGACGGAGGAAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
3240 4060 2.019807 TTTGGGACGGAGGAAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
3241 4061 2.845363 TTTTGGGACGGAGGAAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
3242 4062 4.533311 ACTTATTTTGGGACGGAGGAAGTA 59.467 41.667 0.00 0.00 0.00 2.24
3243 4063 3.329814 ACTTATTTTGGGACGGAGGAAGT 59.670 43.478 0.00 0.00 0.00 3.01
3244 4064 3.689649 CACTTATTTTGGGACGGAGGAAG 59.310 47.826 0.00 0.00 0.00 3.46
3245 4065 3.073356 ACACTTATTTTGGGACGGAGGAA 59.927 43.478 0.00 0.00 0.00 3.36
3246 4066 2.640826 ACACTTATTTTGGGACGGAGGA 59.359 45.455 0.00 0.00 0.00 3.71
3247 4067 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3248 4068 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3249 4069 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
3250 4070 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
3251 4071 4.083484 GGTCAAGACACTTATTTTGGGACG 60.083 45.833 2.29 0.00 0.00 4.79
3252 4072 5.070685 AGGTCAAGACACTTATTTTGGGAC 58.929 41.667 2.29 0.00 0.00 4.46
3253 4073 5.319043 AGGTCAAGACACTTATTTTGGGA 57.681 39.130 2.29 0.00 0.00 4.37
3254 4074 6.151144 CCTAAGGTCAAGACACTTATTTTGGG 59.849 42.308 2.29 2.41 0.00 4.12
3255 4075 6.151144 CCCTAAGGTCAAGACACTTATTTTGG 59.849 42.308 2.29 5.48 0.00 3.28
3256 4076 6.940298 TCCCTAAGGTCAAGACACTTATTTTG 59.060 38.462 2.29 0.00 0.00 2.44
3257 4077 6.940867 GTCCCTAAGGTCAAGACACTTATTTT 59.059 38.462 2.29 0.00 0.00 1.82
3258 4078 6.043938 TGTCCCTAAGGTCAAGACACTTATTT 59.956 38.462 2.29 0.00 32.75 1.40
3259 4079 5.546499 TGTCCCTAAGGTCAAGACACTTATT 59.454 40.000 2.29 0.00 32.75 1.40
3260 4080 5.091552 TGTCCCTAAGGTCAAGACACTTAT 58.908 41.667 2.29 0.00 32.75 1.73
3261 4081 4.485875 TGTCCCTAAGGTCAAGACACTTA 58.514 43.478 2.29 6.73 32.75 2.24
3262 4082 3.314693 TGTCCCTAAGGTCAAGACACTT 58.685 45.455 2.29 5.99 32.75 3.16
3263 4083 2.972348 TGTCCCTAAGGTCAAGACACT 58.028 47.619 2.29 0.00 32.75 3.55
3265 4085 2.972348 AGTGTCCCTAAGGTCAAGACA 58.028 47.619 2.29 0.00 32.72 3.41
3266 4086 5.422650 AGATAAGTGTCCCTAAGGTCAAGAC 59.577 44.000 0.00 0.00 32.72 3.01
3267 4087 5.590818 AGATAAGTGTCCCTAAGGTCAAGA 58.409 41.667 0.00 0.00 32.72 3.02
3268 4088 5.941555 AGATAAGTGTCCCTAAGGTCAAG 57.058 43.478 0.00 0.00 32.72 3.02
3269 4089 5.783360 TCAAGATAAGTGTCCCTAAGGTCAA 59.217 40.000 0.00 0.00 32.72 3.18
3270 4090 5.187186 GTCAAGATAAGTGTCCCTAAGGTCA 59.813 44.000 0.00 0.00 0.00 4.02
3271 4091 5.395435 GGTCAAGATAAGTGTCCCTAAGGTC 60.395 48.000 0.00 0.00 0.00 3.85
3272 4092 4.470304 GGTCAAGATAAGTGTCCCTAAGGT 59.530 45.833 0.00 0.00 0.00 3.50
3273 4093 4.717280 AGGTCAAGATAAGTGTCCCTAAGG 59.283 45.833 0.00 0.00 0.00 2.69
3274 4094 5.941555 AGGTCAAGATAAGTGTCCCTAAG 57.058 43.478 0.00 0.00 0.00 2.18
3275 4095 6.383147 CCTAAGGTCAAGATAAGTGTCCCTAA 59.617 42.308 0.00 0.00 0.00 2.69
3276 4096 5.897824 CCTAAGGTCAAGATAAGTGTCCCTA 59.102 44.000 0.00 0.00 0.00 3.53
3277 4097 4.717280 CCTAAGGTCAAGATAAGTGTCCCT 59.283 45.833 0.00 0.00 0.00 4.20
3278 4098 4.141688 CCCTAAGGTCAAGATAAGTGTCCC 60.142 50.000 0.00 0.00 0.00 4.46
3279 4099 4.715297 TCCCTAAGGTCAAGATAAGTGTCC 59.285 45.833 0.00 0.00 0.00 4.02
3280 4100 5.187186 TGTCCCTAAGGTCAAGATAAGTGTC 59.813 44.000 0.00 0.00 0.00 3.67
3281 4101 5.046520 GTGTCCCTAAGGTCAAGATAAGTGT 60.047 44.000 0.00 0.00 32.72 3.55
3282 4102 5.187967 AGTGTCCCTAAGGTCAAGATAAGTG 59.812 44.000 0.00 0.00 32.72 3.16
3283 4103 5.342866 AGTGTCCCTAAGGTCAAGATAAGT 58.657 41.667 0.00 0.00 32.72 2.24
3284 4104 5.941555 AGTGTCCCTAAGGTCAAGATAAG 57.058 43.478 0.00 0.00 32.72 1.73
3285 4105 7.989947 ATAAGTGTCCCTAAGGTCAAGATAA 57.010 36.000 0.00 0.00 32.72 1.75
3286 4106 7.989947 AATAAGTGTCCCTAAGGTCAAGATA 57.010 36.000 0.00 0.00 32.72 1.98
3287 4107 6.893020 AATAAGTGTCCCTAAGGTCAAGAT 57.107 37.500 0.00 0.00 32.72 2.40
3288 4108 6.697641 AAATAAGTGTCCCTAAGGTCAAGA 57.302 37.500 0.00 0.00 32.72 3.02
3289 4109 6.151144 CCAAAATAAGTGTCCCTAAGGTCAAG 59.849 42.308 0.00 0.00 32.72 3.02
3290 4110 6.007703 CCAAAATAAGTGTCCCTAAGGTCAA 58.992 40.000 0.00 0.00 32.72 3.18
3291 4111 5.515886 CCCAAAATAAGTGTCCCTAAGGTCA 60.516 44.000 0.00 0.00 0.00 4.02
3292 4112 4.948004 CCCAAAATAAGTGTCCCTAAGGTC 59.052 45.833 0.00 0.00 0.00 3.85
3293 4113 4.604490 TCCCAAAATAAGTGTCCCTAAGGT 59.396 41.667 0.00 0.00 0.00 3.50
3294 4114 4.948004 GTCCCAAAATAAGTGTCCCTAAGG 59.052 45.833 0.00 0.00 0.00 2.69
3295 4115 4.634443 CGTCCCAAAATAAGTGTCCCTAAG 59.366 45.833 0.00 0.00 0.00 2.18
3296 4116 4.286549 TCGTCCCAAAATAAGTGTCCCTAA 59.713 41.667 0.00 0.00 0.00 2.69
3297 4117 3.839490 TCGTCCCAAAATAAGTGTCCCTA 59.161 43.478 0.00 0.00 0.00 3.53
3298 4118 2.640826 TCGTCCCAAAATAAGTGTCCCT 59.359 45.455 0.00 0.00 0.00 4.20
3299 4119 3.062122 TCGTCCCAAAATAAGTGTCCC 57.938 47.619 0.00 0.00 0.00 4.46
3300 4120 3.439129 CCTTCGTCCCAAAATAAGTGTCC 59.561 47.826 0.00 0.00 0.00 4.02
3301 4121 3.439129 CCCTTCGTCCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
3302 4122 3.073356 TCCCTTCGTCCCAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
3303 4123 3.681593 TCCCTTCGTCCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
3304 4124 3.329814 ACTCCCTTCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
3305 4125 3.951663 ACTCCCTTCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
3306 4126 4.286549 TGTACTCCCTTCGTCCCAAAATAA 59.713 41.667 0.00 0.00 0.00 1.40
3307 4127 3.839490 TGTACTCCCTTCGTCCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
3308 4128 2.640826 TGTACTCCCTTCGTCCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
3309 4129 2.048601 TGTACTCCCTTCGTCCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
3310 4130 1.719529 TGTACTCCCTTCGTCCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
3311 4131 1.719529 TTGTACTCCCTTCGTCCCAA 58.280 50.000 0.00 0.00 0.00 4.12
3312 4132 1.621814 CTTTGTACTCCCTTCGTCCCA 59.378 52.381 0.00 0.00 0.00 4.37
3313 4133 1.622312 ACTTTGTACTCCCTTCGTCCC 59.378 52.381 0.00 0.00 0.00 4.46
3314 4134 3.064931 CAACTTTGTACTCCCTTCGTCC 58.935 50.000 0.00 0.00 0.00 4.79
3315 4135 3.986277 TCAACTTTGTACTCCCTTCGTC 58.014 45.455 0.00 0.00 0.00 4.20
3316 4136 3.640029 TCTCAACTTTGTACTCCCTTCGT 59.360 43.478 0.00 0.00 0.00 3.85
3317 4137 3.988517 GTCTCAACTTTGTACTCCCTTCG 59.011 47.826 0.00 0.00 0.00 3.79
3318 4138 4.750598 GTGTCTCAACTTTGTACTCCCTTC 59.249 45.833 0.00 0.00 0.00 3.46
3319 4139 4.409247 AGTGTCTCAACTTTGTACTCCCTT 59.591 41.667 0.00 0.00 0.00 3.95
3320 4140 3.967987 AGTGTCTCAACTTTGTACTCCCT 59.032 43.478 0.00 0.00 0.00 4.20
3321 4141 4.338379 AGTGTCTCAACTTTGTACTCCC 57.662 45.455 0.00 0.00 0.00 4.30
3322 4142 7.964604 AATAAGTGTCTCAACTTTGTACTCC 57.035 36.000 0.00 0.00 40.77 3.85
3330 4150 9.832445 TCTGTCTTAAAATAAGTGTCTCAACTT 57.168 29.630 0.00 0.00 42.89 2.66
3331 4151 9.482627 CTCTGTCTTAAAATAAGTGTCTCAACT 57.517 33.333 0.00 0.00 0.00 3.16
3332 4152 8.713271 CCTCTGTCTTAAAATAAGTGTCTCAAC 58.287 37.037 0.00 0.00 0.00 3.18
3333 4153 7.878127 CCCTCTGTCTTAAAATAAGTGTCTCAA 59.122 37.037 0.00 0.00 0.00 3.02
3334 4154 7.234782 TCCCTCTGTCTTAAAATAAGTGTCTCA 59.765 37.037 0.00 0.00 0.00 3.27
3335 4155 7.612677 TCCCTCTGTCTTAAAATAAGTGTCTC 58.387 38.462 0.00 0.00 0.00 3.36
3336 4156 7.235812 ACTCCCTCTGTCTTAAAATAAGTGTCT 59.764 37.037 0.00 0.00 0.00 3.41
3337 4157 7.387643 ACTCCCTCTGTCTTAAAATAAGTGTC 58.612 38.462 0.00 0.00 0.00 3.67
3338 4158 7.317722 ACTCCCTCTGTCTTAAAATAAGTGT 57.682 36.000 0.00 0.00 0.00 3.55
3339 4159 9.720769 TTTACTCCCTCTGTCTTAAAATAAGTG 57.279 33.333 0.00 0.00 0.00 3.16
3344 4164 9.807921 TCAATTTTACTCCCTCTGTCTTAAAAT 57.192 29.630 0.00 0.00 32.91 1.82
3345 4165 9.284968 CTCAATTTTACTCCCTCTGTCTTAAAA 57.715 33.333 0.00 0.00 0.00 1.52
3346 4166 8.437575 ACTCAATTTTACTCCCTCTGTCTTAAA 58.562 33.333 0.00 0.00 0.00 1.52
3347 4167 7.974504 ACTCAATTTTACTCCCTCTGTCTTAA 58.025 34.615 0.00 0.00 0.00 1.85
3348 4168 7.554959 ACTCAATTTTACTCCCTCTGTCTTA 57.445 36.000 0.00 0.00 0.00 2.10
3349 4169 6.441088 ACTCAATTTTACTCCCTCTGTCTT 57.559 37.500 0.00 0.00 0.00 3.01
3350 4170 6.441088 AACTCAATTTTACTCCCTCTGTCT 57.559 37.500 0.00 0.00 0.00 3.41
3351 4171 6.710744 TCAAACTCAATTTTACTCCCTCTGTC 59.289 38.462 0.00 0.00 0.00 3.51
3352 4172 6.486993 GTCAAACTCAATTTTACTCCCTCTGT 59.513 38.462 0.00 0.00 0.00 3.41
3353 4173 6.486657 TGTCAAACTCAATTTTACTCCCTCTG 59.513 38.462 0.00 0.00 0.00 3.35
3354 4174 6.601332 TGTCAAACTCAATTTTACTCCCTCT 58.399 36.000 0.00 0.00 0.00 3.69
3355 4175 6.877611 TGTCAAACTCAATTTTACTCCCTC 57.122 37.500 0.00 0.00 0.00 4.30
3356 4176 7.287696 ACAATGTCAAACTCAATTTTACTCCCT 59.712 33.333 0.00 0.00 0.00 4.20
3357 4177 7.433680 ACAATGTCAAACTCAATTTTACTCCC 58.566 34.615 0.00 0.00 0.00 4.30
3358 4178 9.959749 TTACAATGTCAAACTCAATTTTACTCC 57.040 29.630 0.00 0.00 0.00 3.85
3371 4191 3.972502 GCGTGGAGTTTACAATGTCAAAC 59.027 43.478 0.00 0.00 35.36 2.93
3375 4195 5.539582 TTATGCGTGGAGTTTACAATGTC 57.460 39.130 0.00 0.00 0.00 3.06
3381 4201 3.373130 GGGTCTTTATGCGTGGAGTTTAC 59.627 47.826 0.00 0.00 0.00 2.01
3382 4202 3.008157 TGGGTCTTTATGCGTGGAGTTTA 59.992 43.478 0.00 0.00 0.00 2.01
3388 4208 4.578516 TGAATTATGGGTCTTTATGCGTGG 59.421 41.667 0.00 0.00 0.00 4.94
3392 4212 8.947055 AATTGTTGAATTATGGGTCTTTATGC 57.053 30.769 0.00 0.00 29.49 3.14
3395 4215 8.250332 GCAGAATTGTTGAATTATGGGTCTTTA 58.750 33.333 0.00 0.00 39.95 1.85
3398 4218 5.127682 GGCAGAATTGTTGAATTATGGGTCT 59.872 40.000 0.00 0.00 39.95 3.85
3430 4250 2.206750 CTGGACGTCAAAGTTTTCGGA 58.793 47.619 18.91 0.00 0.00 4.55
3444 4264 1.860676 TTTTCCGTGAGAACTGGACG 58.139 50.000 0.00 0.00 32.95 4.79
3446 4266 4.941263 CCATATTTTTCCGTGAGAACTGGA 59.059 41.667 0.00 0.00 32.95 3.86
3569 4389 3.765511 TGAAGATGCTTTGGGGAGAAATG 59.234 43.478 0.00 0.00 0.00 2.32
3601 4455 5.011738 TGGAGTCTAGTTGGTTACTGAAAGG 59.988 44.000 0.00 0.00 39.30 3.11
3691 4547 7.148323 CGTTTTTCCCATTACTATGTGTGATGA 60.148 37.037 6.90 0.00 42.98 2.92
3738 4594 2.094894 GTCTGATGTCTGAAATGGCACG 59.905 50.000 0.00 0.00 0.00 5.34
3769 4625 8.638685 GCAATCTGCTATACATCAACATTTTT 57.361 30.769 0.00 0.00 40.96 1.94
3842 4698 4.341235 CGTAGGATGGAGATGTAACCTTCA 59.659 45.833 0.00 0.00 33.73 3.02
3855 4717 0.541392 ATGTTGCAGCGTAGGATGGA 59.459 50.000 2.53 0.00 0.00 3.41
3856 4718 2.238942 TATGTTGCAGCGTAGGATGG 57.761 50.000 2.53 0.00 0.00 3.51
3857 4719 3.392882 TCATATGTTGCAGCGTAGGATG 58.607 45.455 12.33 5.53 0.00 3.51
3858 4720 3.555795 CCTCATATGTTGCAGCGTAGGAT 60.556 47.826 15.94 0.00 0.00 3.24
3859 4721 2.224042 CCTCATATGTTGCAGCGTAGGA 60.224 50.000 15.00 15.00 0.00 2.94
3860 4722 2.138320 CCTCATATGTTGCAGCGTAGG 58.862 52.381 7.99 7.99 0.00 3.18
3891 4753 8.408601 GTCTTATATTGTCTTTGACATGGCATT 58.591 33.333 0.00 0.00 42.40 3.56
3912 4776 3.935203 GCAGAGCAAATGTAGCAGTCTTA 59.065 43.478 0.00 0.00 0.00 2.10
3918 4782 3.673902 TGTTAGCAGAGCAAATGTAGCA 58.326 40.909 0.00 0.00 0.00 3.49
3974 4838 4.836825 CCAACTCATTGTACCTGTGATCT 58.163 43.478 0.00 0.00 33.60 2.75
4022 4886 2.203224 TTTGGGTTGGCGAGCGAA 60.203 55.556 0.00 0.00 0.00 4.70
4108 4977 1.760613 ACTTCTCGAACCAACTGACCA 59.239 47.619 0.00 0.00 0.00 4.02
4137 5007 5.243283 ACACAGTCAATAGAGGTAGACGTTT 59.757 40.000 0.00 0.00 36.18 3.60
4138 5008 4.765856 ACACAGTCAATAGAGGTAGACGTT 59.234 41.667 0.00 0.00 36.18 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.