Multiple sequence alignment - TraesCS2B01G179100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G179100 chr2B 100.000 2815 0 0 1 2815 153896535 153893721 0.000000e+00 5199
1 TraesCS2B01G179100 chr2B 83.059 425 40 23 1126 1546 153907835 153907439 9.590000e-95 357
2 TraesCS2B01G179100 chr2B 88.024 167 17 1 2652 2815 692398118 692398284 7.960000e-46 195
3 TraesCS2B01G179100 chr2D 88.416 2089 140 52 1 2041 102647873 102645839 0.000000e+00 2423
4 TraesCS2B01G179100 chr2D 91.435 467 34 3 2353 2814 102645830 102645365 1.100000e-178 636
5 TraesCS2B01G179100 chr2D 80.976 615 62 36 950 1546 102728627 102728050 1.200000e-118 436
6 TraesCS2B01G179100 chr2A 90.078 1542 81 35 532 2032 101825590 101824080 0.000000e+00 1934
7 TraesCS2B01G179100 chr2A 87.069 464 35 10 2302 2760 101801539 101801096 4.190000e-138 501
8 TraesCS2B01G179100 chr2A 85.626 487 52 15 1 479 101826058 101825582 1.950000e-136 496
9 TraesCS2B01G179100 chr2A 85.143 350 31 15 1200 1546 101840182 101839851 3.470000e-89 339
10 TraesCS2B01G179100 chr2A 95.349 86 4 0 2730 2815 101801078 101800993 1.360000e-28 137
11 TraesCS2B01G179100 chr5D 85.821 670 41 16 1050 1714 432892929 432892309 0.000000e+00 662
12 TraesCS2B01G179100 chr1B 84.211 190 15 8 1524 1712 588239879 588240054 1.340000e-38 171
13 TraesCS2B01G179100 chr4A 82.184 174 14 9 1543 1714 358879867 358880025 1.760000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G179100 chr2B 153893721 153896535 2814 True 5199.0 5199 100.0000 1 2815 1 chr2B.!!$R1 2814
1 TraesCS2B01G179100 chr2D 102645365 102647873 2508 True 1529.5 2423 89.9255 1 2814 2 chr2D.!!$R2 2813
2 TraesCS2B01G179100 chr2D 102728050 102728627 577 True 436.0 436 80.9760 950 1546 1 chr2D.!!$R1 596
3 TraesCS2B01G179100 chr2A 101824080 101826058 1978 True 1215.0 1934 87.8520 1 2032 2 chr2A.!!$R3 2031
4 TraesCS2B01G179100 chr2A 101800993 101801539 546 True 319.0 501 91.2090 2302 2815 2 chr2A.!!$R2 513
5 TraesCS2B01G179100 chr5D 432892309 432892929 620 True 662.0 662 85.8210 1050 1714 1 chr5D.!!$R1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 500 0.034896 GGCTTGTCCCTCTTCGTTCA 59.965 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 2298 0.032952 GGAGTGTTGGTGCACGTCTA 59.967 55.0 11.45 0.0 43.61 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.614057 CAAGACAAATAGGGTCATCGGC 59.386 50.000 0.00 0.00 37.74 5.54
138 149 4.867047 CACACATGCTAAGACCTCTTACTG 59.133 45.833 0.00 0.00 37.40 2.74
153 165 6.213600 ACCTCTTACTGTGTCTTATGTCCATT 59.786 38.462 0.00 0.00 0.00 3.16
184 196 9.586435 AGTTTTAAAACTCATATTAAGGCATGC 57.414 29.630 24.66 9.90 45.65 4.06
219 231 2.401195 GCTTTGCCTGCGATCGTC 59.599 61.111 17.81 9.69 0.00 4.20
261 274 1.229529 GTCTTCCCACCTCCTCCCA 60.230 63.158 0.00 0.00 0.00 4.37
277 290 3.415212 CTCCCATTTTCTTCTCACTGCA 58.585 45.455 0.00 0.00 0.00 4.41
282 295 4.285292 CATTTTCTTCTCACTGCACACAC 58.715 43.478 0.00 0.00 0.00 3.82
283 296 2.689553 TTCTTCTCACTGCACACACA 57.310 45.000 0.00 0.00 0.00 3.72
284 297 2.916702 TCTTCTCACTGCACACACAT 57.083 45.000 0.00 0.00 0.00 3.21
285 298 3.198409 TCTTCTCACTGCACACACATT 57.802 42.857 0.00 0.00 0.00 2.71
286 299 3.133691 TCTTCTCACTGCACACACATTC 58.866 45.455 0.00 0.00 0.00 2.67
287 300 1.882912 TCTCACTGCACACACATTCC 58.117 50.000 0.00 0.00 0.00 3.01
288 301 1.417517 TCTCACTGCACACACATTCCT 59.582 47.619 0.00 0.00 0.00 3.36
289 302 2.632512 TCTCACTGCACACACATTCCTA 59.367 45.455 0.00 0.00 0.00 2.94
290 303 2.738846 CTCACTGCACACACATTCCTAC 59.261 50.000 0.00 0.00 0.00 3.18
296 309 2.028112 GCACACACATTCCTACTCCTCA 60.028 50.000 0.00 0.00 0.00 3.86
303 316 3.208692 ACATTCCTACTCCTCATCCTCCT 59.791 47.826 0.00 0.00 0.00 3.69
307 320 2.235016 CTACTCCTCATCCTCCTTCCG 58.765 57.143 0.00 0.00 0.00 4.30
308 321 1.045911 ACTCCTCATCCTCCTTCCGC 61.046 60.000 0.00 0.00 0.00 5.54
310 323 2.419198 CTCATCCTCCTTCCGCCG 59.581 66.667 0.00 0.00 0.00 6.46
311 324 3.798954 CTCATCCTCCTTCCGCCGC 62.799 68.421 0.00 0.00 0.00 6.53
328 342 1.889573 GCCATTGTCGAGCTAGGGC 60.890 63.158 8.61 8.61 41.80 5.19
329 343 1.522092 CCATTGTCGAGCTAGGGCA 59.478 57.895 0.00 0.00 41.70 5.36
354 368 2.559668 CCACACACAGCAAATCCTTCAT 59.440 45.455 0.00 0.00 0.00 2.57
356 370 3.253921 CACACACAGCAAATCCTTCATCA 59.746 43.478 0.00 0.00 0.00 3.07
376 390 5.546621 TCAGATGGGCTTATTACCACTAC 57.453 43.478 0.00 0.00 40.05 2.73
383 397 4.768968 GGGCTTATTACCACTACTATCCGA 59.231 45.833 0.00 0.00 0.00 4.55
402 417 3.419759 GCCGGTTGTCGTCGCATT 61.420 61.111 1.90 0.00 37.11 3.56
406 421 1.857364 GGTTGTCGTCGCATTTCGT 59.143 52.632 0.00 0.00 39.67 3.85
407 422 0.233848 GGTTGTCGTCGCATTTCGTT 59.766 50.000 0.00 0.00 39.67 3.85
409 424 0.233590 TTGTCGTCGCATTTCGTTGG 59.766 50.000 0.00 0.00 39.67 3.77
434 451 5.105269 TGACCTAATCACCGTTAATGCACTA 60.105 40.000 0.00 0.00 29.99 2.74
439 456 2.563620 TCACCGTTAATGCACTACTCCA 59.436 45.455 0.00 0.00 0.00 3.86
456 473 1.320344 CCATCCACCTTCCGACTCGA 61.320 60.000 0.00 0.00 0.00 4.04
482 499 0.321996 AGGCTTGTCCCTCTTCGTTC 59.678 55.000 0.00 0.00 34.51 3.95
483 500 0.034896 GGCTTGTCCCTCTTCGTTCA 59.965 55.000 0.00 0.00 0.00 3.18
496 513 2.257974 TCGTTCAATCTTCCGACTCG 57.742 50.000 0.00 0.00 0.00 4.18
497 514 1.808343 TCGTTCAATCTTCCGACTCGA 59.192 47.619 0.00 0.00 0.00 4.04
498 515 2.422479 TCGTTCAATCTTCCGACTCGAT 59.578 45.455 0.00 0.00 0.00 3.59
499 516 2.531912 CGTTCAATCTTCCGACTCGATG 59.468 50.000 0.00 0.00 0.00 3.84
508 525 4.194720 GACTCGATGTCGCGGGCT 62.195 66.667 6.13 0.00 39.60 5.19
510 527 3.257561 CTCGATGTCGCGGGCTTG 61.258 66.667 6.13 0.00 39.60 4.01
513 530 3.195698 GATGTCGCGGGCTTGTCC 61.196 66.667 6.13 0.00 0.00 4.02
523 540 2.842320 GGCTTGTCCCTCTTCGTTC 58.158 57.895 0.00 0.00 0.00 3.95
524 541 0.673956 GGCTTGTCCCTCTTCGTTCC 60.674 60.000 0.00 0.00 0.00 3.62
525 542 0.034896 GCTTGTCCCTCTTCGTTCCA 59.965 55.000 0.00 0.00 0.00 3.53
526 543 1.797025 CTTGTCCCTCTTCGTTCCAC 58.203 55.000 0.00 0.00 0.00 4.02
527 544 1.344763 CTTGTCCCTCTTCGTTCCACT 59.655 52.381 0.00 0.00 0.00 4.00
569 586 2.006888 TCCAATCCAGCGTTCGAAATC 58.993 47.619 0.00 0.00 0.00 2.17
597 614 3.151554 GTTTCGGTAATTTGGTGGGACT 58.848 45.455 0.00 0.00 0.00 3.85
606 623 8.305317 CGGTAATTTGGTGGGACTAAAATTTTA 58.695 33.333 10.16 10.16 32.38 1.52
614 632 9.116067 TGGTGGGACTAAAATTTTATAATCTCG 57.884 33.333 10.97 1.04 0.00 4.04
633 651 2.163412 TCGAAATTTTGGGCCAGATTCG 59.837 45.455 25.68 25.68 39.43 3.34
666 688 6.405538 TCAAGCCAAATTTAAATTAGGCCTG 58.594 36.000 17.99 7.98 42.97 4.85
670 692 5.348164 CCAAATTTAAATTAGGCCTGACCG 58.652 41.667 17.99 0.00 46.52 4.79
674 696 6.688637 ATTTAAATTAGGCCTGACCGTAAC 57.311 37.500 17.99 0.00 46.52 2.50
677 699 2.684001 TTAGGCCTGACCGTAACATG 57.316 50.000 17.99 0.00 46.52 3.21
706 728 8.449085 CAAGCATGCATGAAGATCAATATAAC 57.551 34.615 30.64 6.96 0.00 1.89
708 730 8.349568 AGCATGCATGAAGATCAATATAACAT 57.650 30.769 30.64 0.00 0.00 2.71
709 731 8.244113 AGCATGCATGAAGATCAATATAACATG 58.756 33.333 30.64 0.00 37.34 3.21
710 732 8.241367 GCATGCATGAAGATCAATATAACATGA 58.759 33.333 30.64 0.00 36.70 3.07
713 735 9.509956 TGCATGAAGATCAATATAACATGATGA 57.490 29.630 0.00 0.00 36.45 2.92
981 1029 1.672363 CGTCCGCGCCTATATATACCA 59.328 52.381 0.00 0.00 0.00 3.25
989 1037 1.340248 CCTATATATACCAGCGCCCGG 59.660 57.143 11.77 11.77 0.00 5.73
1133 1211 3.474570 GAGGGACCAGCTGCCGAT 61.475 66.667 8.66 0.00 34.82 4.18
1564 1663 4.925861 GCTCCCCCTGCTGATCGC 62.926 72.222 3.07 3.07 39.77 4.58
1572 1671 1.812922 CTGCTGATCGCCTCACCAC 60.813 63.158 7.00 0.00 38.05 4.16
1590 1691 2.034879 CACCACACCATCGACAGCC 61.035 63.158 0.00 0.00 0.00 4.85
1591 1692 2.217038 ACCACACCATCGACAGCCT 61.217 57.895 0.00 0.00 0.00 4.58
1596 1697 4.147449 CCATCGACAGCCTGCGGA 62.147 66.667 8.30 0.00 0.00 5.54
1618 1719 3.011818 TGGTCATCAACTCATCATGCAC 58.988 45.455 0.00 0.00 0.00 4.57
1622 1723 0.798159 TCAACTCATCATGCACGCAC 59.202 50.000 0.00 0.00 0.00 5.34
2003 2117 1.005294 ACGTCACGTAATGGCACGAC 61.005 55.000 0.00 0.00 44.69 4.34
2037 2155 1.805254 GGCCACTGCACATGCTAAG 59.195 57.895 0.00 0.00 42.66 2.18
2041 2159 2.945008 GCCACTGCACATGCTAAGAATA 59.055 45.455 5.31 0.00 42.66 1.75
2042 2160 3.567164 GCCACTGCACATGCTAAGAATAT 59.433 43.478 5.31 0.00 42.66 1.28
2043 2161 4.037208 GCCACTGCACATGCTAAGAATATT 59.963 41.667 5.31 0.00 42.66 1.28
2045 2163 5.975344 CCACTGCACATGCTAAGAATATTTG 59.025 40.000 5.31 0.00 42.66 2.32
2046 2164 5.975344 CACTGCACATGCTAAGAATATTTGG 59.025 40.000 5.31 0.00 42.66 3.28
2048 2166 5.199723 TGCACATGCTAAGAATATTTGGGA 58.800 37.500 5.31 0.00 42.66 4.37
2049 2167 5.067674 TGCACATGCTAAGAATATTTGGGAC 59.932 40.000 5.31 0.00 42.66 4.46
2050 2168 5.751680 CACATGCTAAGAATATTTGGGACG 58.248 41.667 0.00 0.00 0.00 4.79
2051 2169 4.275936 ACATGCTAAGAATATTTGGGACGC 59.724 41.667 0.00 0.00 0.00 5.19
2052 2170 3.879998 TGCTAAGAATATTTGGGACGCA 58.120 40.909 0.00 0.00 0.00 5.24
2053 2171 3.625764 TGCTAAGAATATTTGGGACGCAC 59.374 43.478 0.00 0.00 0.00 5.34
2054 2172 3.303132 GCTAAGAATATTTGGGACGCACG 60.303 47.826 0.00 0.00 0.00 5.34
2055 2173 2.684001 AGAATATTTGGGACGCACGA 57.316 45.000 0.00 0.00 0.00 4.35
2056 2174 2.980568 AGAATATTTGGGACGCACGAA 58.019 42.857 0.00 0.00 0.00 3.85
2057 2175 3.340034 AGAATATTTGGGACGCACGAAA 58.660 40.909 0.00 0.00 0.00 3.46
2058 2176 3.374058 AGAATATTTGGGACGCACGAAAG 59.626 43.478 0.00 0.00 0.00 2.62
2059 2177 0.800012 TATTTGGGACGCACGAAAGC 59.200 50.000 0.00 0.00 0.00 3.51
2060 2178 1.862602 ATTTGGGACGCACGAAAGCC 61.863 55.000 0.00 0.00 0.00 4.35
2061 2179 2.951475 TTTGGGACGCACGAAAGCCT 62.951 55.000 0.00 0.00 0.00 4.58
2062 2180 3.119096 GGGACGCACGAAAGCCTC 61.119 66.667 0.00 0.00 0.00 4.70
2063 2181 2.357034 GGACGCACGAAAGCCTCA 60.357 61.111 0.00 0.00 0.00 3.86
2064 2182 2.668280 GGACGCACGAAAGCCTCAC 61.668 63.158 0.00 0.00 0.00 3.51
2065 2183 3.000080 GACGCACGAAAGCCTCACG 62.000 63.158 0.00 0.00 0.00 4.35
2066 2184 3.036084 CGCACGAAAGCCTCACGT 61.036 61.111 0.00 0.00 40.87 4.49
2067 2185 2.853914 GCACGAAAGCCTCACGTC 59.146 61.111 0.00 0.00 38.18 4.34
2068 2186 1.664965 GCACGAAAGCCTCACGTCT 60.665 57.895 0.00 0.00 38.18 4.18
2069 2187 1.618640 GCACGAAAGCCTCACGTCTC 61.619 60.000 0.00 0.00 38.18 3.36
2070 2188 0.318699 CACGAAAGCCTCACGTCTCA 60.319 55.000 0.00 0.00 38.18 3.27
2071 2189 0.318784 ACGAAAGCCTCACGTCTCAC 60.319 55.000 0.00 0.00 35.33 3.51
2089 2207 2.519377 ACGTCTCGTGGATGTTCAAA 57.481 45.000 0.00 0.00 40.95 2.69
2090 2208 2.404215 ACGTCTCGTGGATGTTCAAAG 58.596 47.619 0.00 0.00 40.95 2.77
2091 2209 1.126846 CGTCTCGTGGATGTTCAAAGC 59.873 52.381 0.00 0.00 0.00 3.51
2092 2210 1.464997 GTCTCGTGGATGTTCAAAGCC 59.535 52.381 0.00 0.00 0.00 4.35
2093 2211 1.071542 TCTCGTGGATGTTCAAAGCCA 59.928 47.619 0.00 0.00 0.00 4.75
2094 2212 1.879380 CTCGTGGATGTTCAAAGCCAA 59.121 47.619 0.00 0.00 31.18 4.52
2095 2213 2.489329 CTCGTGGATGTTCAAAGCCAAT 59.511 45.455 0.00 0.00 31.18 3.16
2096 2214 2.228582 TCGTGGATGTTCAAAGCCAATG 59.771 45.455 0.00 0.00 31.18 2.82
2097 2215 2.340337 GTGGATGTTCAAAGCCAATGC 58.660 47.619 0.00 0.00 37.95 3.56
2098 2216 1.275856 TGGATGTTCAAAGCCAATGCC 59.724 47.619 0.00 0.00 38.69 4.40
2099 2217 1.551883 GGATGTTCAAAGCCAATGCCT 59.448 47.619 0.00 0.00 38.69 4.75
2100 2218 2.613691 GATGTTCAAAGCCAATGCCTG 58.386 47.619 0.00 0.00 38.69 4.85
2101 2219 1.412079 TGTTCAAAGCCAATGCCTGT 58.588 45.000 0.00 0.00 38.69 4.00
2102 2220 1.340889 TGTTCAAAGCCAATGCCTGTC 59.659 47.619 0.00 0.00 38.69 3.51
2103 2221 1.340889 GTTCAAAGCCAATGCCTGTCA 59.659 47.619 0.00 0.00 38.69 3.58
2104 2222 1.250328 TCAAAGCCAATGCCTGTCAG 58.750 50.000 0.00 0.00 38.69 3.51
2105 2223 0.963962 CAAAGCCAATGCCTGTCAGT 59.036 50.000 0.00 0.00 38.69 3.41
2106 2224 1.342174 CAAAGCCAATGCCTGTCAGTT 59.658 47.619 0.00 0.00 38.69 3.16
2107 2225 1.708341 AAGCCAATGCCTGTCAGTTT 58.292 45.000 0.00 0.00 38.69 2.66
2108 2226 1.251251 AGCCAATGCCTGTCAGTTTC 58.749 50.000 0.00 0.00 38.69 2.78
2109 2227 0.961019 GCCAATGCCTGTCAGTTTCA 59.039 50.000 0.00 0.00 0.00 2.69
2110 2228 1.068055 GCCAATGCCTGTCAGTTTCAG 60.068 52.381 0.00 0.00 0.00 3.02
2111 2229 1.068055 CCAATGCCTGTCAGTTTCAGC 60.068 52.381 0.00 0.00 0.00 4.26
2112 2230 1.068055 CAATGCCTGTCAGTTTCAGCC 60.068 52.381 0.00 0.00 0.00 4.85
2113 2231 0.403271 ATGCCTGTCAGTTTCAGCCT 59.597 50.000 0.00 0.00 0.00 4.58
2114 2232 0.183492 TGCCTGTCAGTTTCAGCCTT 59.817 50.000 0.00 0.00 0.00 4.35
2115 2233 1.322442 GCCTGTCAGTTTCAGCCTTT 58.678 50.000 0.00 0.00 0.00 3.11
2116 2234 1.268079 GCCTGTCAGTTTCAGCCTTTC 59.732 52.381 0.00 0.00 0.00 2.62
2117 2235 2.575532 CCTGTCAGTTTCAGCCTTTCA 58.424 47.619 0.00 0.00 0.00 2.69
2118 2236 2.551459 CCTGTCAGTTTCAGCCTTTCAG 59.449 50.000 0.00 0.00 0.00 3.02
2119 2237 1.949525 TGTCAGTTTCAGCCTTTCAGC 59.050 47.619 0.00 0.00 0.00 4.26
2120 2238 2.225467 GTCAGTTTCAGCCTTTCAGCT 58.775 47.619 0.00 0.00 46.45 4.24
2121 2239 3.181455 TGTCAGTTTCAGCCTTTCAGCTA 60.181 43.478 0.00 0.00 42.61 3.32
2122 2240 3.434984 GTCAGTTTCAGCCTTTCAGCTAG 59.565 47.826 0.00 0.00 42.61 3.42
2123 2241 2.161211 CAGTTTCAGCCTTTCAGCTAGC 59.839 50.000 6.62 6.62 42.61 3.42
2124 2242 2.154462 GTTTCAGCCTTTCAGCTAGCA 58.846 47.619 18.83 0.00 42.61 3.49
2125 2243 2.554032 GTTTCAGCCTTTCAGCTAGCAA 59.446 45.455 18.83 0.00 42.61 3.91
2126 2244 2.566833 TCAGCCTTTCAGCTAGCAAA 57.433 45.000 18.83 8.75 42.61 3.68
2127 2245 2.154462 TCAGCCTTTCAGCTAGCAAAC 58.846 47.619 18.83 0.00 42.61 2.93
2128 2246 1.881973 CAGCCTTTCAGCTAGCAAACA 59.118 47.619 18.83 0.00 42.61 2.83
2129 2247 2.490903 CAGCCTTTCAGCTAGCAAACAT 59.509 45.455 18.83 0.00 42.61 2.71
2130 2248 2.490903 AGCCTTTCAGCTAGCAAACATG 59.509 45.455 18.83 6.00 42.70 3.21
2131 2249 2.872370 CCTTTCAGCTAGCAAACATGC 58.128 47.619 18.83 0.00 0.00 4.06
2132 2250 2.229543 CCTTTCAGCTAGCAAACATGCA 59.770 45.455 18.83 0.00 37.25 3.96
2133 2251 3.499048 CTTTCAGCTAGCAAACATGCAG 58.501 45.455 18.83 1.99 37.25 4.41
2134 2252 2.189594 TCAGCTAGCAAACATGCAGT 57.810 45.000 18.83 0.00 37.25 4.40
2135 2253 2.507484 TCAGCTAGCAAACATGCAGTT 58.493 42.857 18.83 0.00 43.89 3.16
2148 2266 5.779529 ACATGCAGTTTCAGTTTCAATCT 57.220 34.783 0.00 0.00 0.00 2.40
2149 2267 5.766222 ACATGCAGTTTCAGTTTCAATCTC 58.234 37.500 0.00 0.00 0.00 2.75
2150 2268 4.836125 TGCAGTTTCAGTTTCAATCTCC 57.164 40.909 0.00 0.00 0.00 3.71
2151 2269 4.464008 TGCAGTTTCAGTTTCAATCTCCT 58.536 39.130 0.00 0.00 0.00 3.69
2152 2270 4.889409 TGCAGTTTCAGTTTCAATCTCCTT 59.111 37.500 0.00 0.00 0.00 3.36
2153 2271 5.009010 TGCAGTTTCAGTTTCAATCTCCTTC 59.991 40.000 0.00 0.00 0.00 3.46
2154 2272 5.563671 GCAGTTTCAGTTTCAATCTCCTTCC 60.564 44.000 0.00 0.00 0.00 3.46
2155 2273 5.532406 CAGTTTCAGTTTCAATCTCCTTCCA 59.468 40.000 0.00 0.00 0.00 3.53
2156 2274 5.767168 AGTTTCAGTTTCAATCTCCTTCCAG 59.233 40.000 0.00 0.00 0.00 3.86
2157 2275 4.292186 TCAGTTTCAATCTCCTTCCAGG 57.708 45.455 0.00 0.00 36.46 4.45
2158 2276 3.009473 TCAGTTTCAATCTCCTTCCAGGG 59.991 47.826 0.00 0.00 35.59 4.45
2159 2277 2.310052 AGTTTCAATCTCCTTCCAGGGG 59.690 50.000 0.00 0.00 37.13 4.79
2160 2278 1.298953 TTCAATCTCCTTCCAGGGGG 58.701 55.000 0.00 0.00 36.18 5.40
2161 2279 0.421495 TCAATCTCCTTCCAGGGGGA 59.579 55.000 2.70 2.70 43.03 4.81
2169 2287 2.941025 TCCAGGGGGAAAGGGCTG 60.941 66.667 0.00 0.00 41.32 4.85
2170 2288 4.066139 CCAGGGGGAAAGGGCTGG 62.066 72.222 0.00 0.00 35.59 4.85
2171 2289 3.268032 CAGGGGGAAAGGGCTGGT 61.268 66.667 0.00 0.00 0.00 4.00
2172 2290 3.268032 AGGGGGAAAGGGCTGGTG 61.268 66.667 0.00 0.00 0.00 4.17
2173 2291 3.264845 GGGGGAAAGGGCTGGTGA 61.265 66.667 0.00 0.00 0.00 4.02
2174 2292 2.851045 GGGGAAAGGGCTGGTGAA 59.149 61.111 0.00 0.00 0.00 3.18
2175 2293 1.155155 GGGGAAAGGGCTGGTGAAA 59.845 57.895 0.00 0.00 0.00 2.69
2176 2294 1.185618 GGGGAAAGGGCTGGTGAAAC 61.186 60.000 0.00 0.00 0.00 2.78
2177 2295 0.469144 GGGAAAGGGCTGGTGAAACA 60.469 55.000 0.00 0.00 39.98 2.83
2178 2296 1.408969 GGAAAGGGCTGGTGAAACAA 58.591 50.000 0.00 0.00 39.98 2.83
2179 2297 1.068588 GGAAAGGGCTGGTGAAACAAC 59.931 52.381 0.00 0.00 39.98 3.32
2180 2298 2.031870 GAAAGGGCTGGTGAAACAACT 58.968 47.619 0.00 0.00 39.98 3.16
2181 2299 3.219281 GAAAGGGCTGGTGAAACAACTA 58.781 45.455 0.00 0.00 39.98 2.24
2182 2300 2.568623 AGGGCTGGTGAAACAACTAG 57.431 50.000 0.00 0.00 39.98 2.57
2183 2301 2.054799 AGGGCTGGTGAAACAACTAGA 58.945 47.619 0.00 0.00 39.98 2.43
2184 2302 2.152016 GGGCTGGTGAAACAACTAGAC 58.848 52.381 0.00 0.00 39.98 2.59
2185 2303 1.798813 GGCTGGTGAAACAACTAGACG 59.201 52.381 0.00 0.00 39.98 4.18
2186 2304 2.480845 GCTGGTGAAACAACTAGACGT 58.519 47.619 0.00 0.00 39.98 4.34
2187 2305 2.221055 GCTGGTGAAACAACTAGACGTG 59.779 50.000 0.00 0.00 39.98 4.49
2188 2306 2.206750 TGGTGAAACAACTAGACGTGC 58.793 47.619 0.00 0.00 39.98 5.34
2189 2307 2.206750 GGTGAAACAACTAGACGTGCA 58.793 47.619 0.00 0.00 39.98 4.57
2190 2308 2.033151 GGTGAAACAACTAGACGTGCAC 60.033 50.000 6.82 6.82 39.98 4.57
2191 2309 2.033151 GTGAAACAACTAGACGTGCACC 60.033 50.000 12.15 0.00 36.32 5.01
2192 2310 2.206750 GAAACAACTAGACGTGCACCA 58.793 47.619 12.15 0.00 0.00 4.17
2193 2311 2.319136 AACAACTAGACGTGCACCAA 57.681 45.000 12.15 0.00 0.00 3.67
2194 2312 1.578583 ACAACTAGACGTGCACCAAC 58.421 50.000 12.15 2.79 0.00 3.77
2195 2313 1.134640 ACAACTAGACGTGCACCAACA 60.135 47.619 12.15 0.00 0.00 3.33
2196 2314 1.260561 CAACTAGACGTGCACCAACAC 59.739 52.381 12.15 0.00 37.19 3.32
2197 2315 0.750850 ACTAGACGTGCACCAACACT 59.249 50.000 12.15 6.24 38.45 3.55
2198 2316 1.269621 ACTAGACGTGCACCAACACTC 60.270 52.381 12.15 0.00 38.45 3.51
2199 2317 0.032952 TAGACGTGCACCAACACTCC 59.967 55.000 12.15 0.00 38.45 3.85
2200 2318 1.522806 GACGTGCACCAACACTCCA 60.523 57.895 12.15 0.00 38.45 3.86
2201 2319 1.078072 ACGTGCACCAACACTCCAA 60.078 52.632 12.15 0.00 38.45 3.53
2202 2320 1.355210 CGTGCACCAACACTCCAAC 59.645 57.895 12.15 0.00 38.45 3.77
2203 2321 1.372838 CGTGCACCAACACTCCAACA 61.373 55.000 12.15 0.00 38.45 3.33
2204 2322 0.381801 GTGCACCAACACTCCAACAG 59.618 55.000 5.22 0.00 37.58 3.16
2205 2323 0.034574 TGCACCAACACTCCAACAGT 60.035 50.000 0.00 0.00 34.67 3.55
2206 2324 1.102978 GCACCAACACTCCAACAGTT 58.897 50.000 0.00 0.00 30.26 3.16
2207 2325 1.065551 GCACCAACACTCCAACAGTTC 59.934 52.381 0.00 0.00 30.26 3.01
2208 2326 2.364632 CACCAACACTCCAACAGTTCA 58.635 47.619 0.00 0.00 30.26 3.18
2209 2327 2.355756 CACCAACACTCCAACAGTTCAG 59.644 50.000 0.00 0.00 30.26 3.02
2210 2328 1.334869 CCAACACTCCAACAGTTCAGC 59.665 52.381 0.00 0.00 30.26 4.26
2211 2329 2.016318 CAACACTCCAACAGTTCAGCA 58.984 47.619 0.00 0.00 30.26 4.41
2212 2330 2.620115 CAACACTCCAACAGTTCAGCAT 59.380 45.455 0.00 0.00 30.26 3.79
2213 2331 2.224606 ACACTCCAACAGTTCAGCATG 58.775 47.619 0.00 0.00 30.26 4.06
2214 2332 1.538512 CACTCCAACAGTTCAGCATGG 59.461 52.381 0.00 0.00 30.87 3.66
2215 2333 1.143684 ACTCCAACAGTTCAGCATGGT 59.856 47.619 0.00 0.00 36.16 3.55
2216 2334 2.233271 CTCCAACAGTTCAGCATGGTT 58.767 47.619 0.00 0.00 36.16 3.67
2217 2335 3.181445 ACTCCAACAGTTCAGCATGGTTA 60.181 43.478 0.00 0.00 36.16 2.85
2218 2336 3.146066 TCCAACAGTTCAGCATGGTTAC 58.854 45.455 0.00 0.00 36.16 2.50
2219 2337 2.228822 CCAACAGTTCAGCATGGTTACC 59.771 50.000 0.00 0.00 36.16 2.85
2220 2338 3.149196 CAACAGTTCAGCATGGTTACCT 58.851 45.455 2.07 0.00 36.16 3.08
2221 2339 2.783135 ACAGTTCAGCATGGTTACCTG 58.217 47.619 2.07 2.48 36.16 4.00
2222 2340 2.371841 ACAGTTCAGCATGGTTACCTGA 59.628 45.455 10.19 3.57 36.16 3.86
2223 2341 3.009473 ACAGTTCAGCATGGTTACCTGAT 59.991 43.478 10.19 0.00 35.72 2.90
2224 2342 4.225042 ACAGTTCAGCATGGTTACCTGATA 59.775 41.667 10.19 0.00 35.72 2.15
2225 2343 4.813161 CAGTTCAGCATGGTTACCTGATAG 59.187 45.833 2.07 0.00 35.72 2.08
2226 2344 3.475566 TCAGCATGGTTACCTGATAGC 57.524 47.619 2.07 0.00 36.16 2.97
2227 2345 2.771372 TCAGCATGGTTACCTGATAGCA 59.229 45.455 2.07 0.00 36.16 3.49
2228 2346 3.136763 CAGCATGGTTACCTGATAGCAG 58.863 50.000 0.00 0.00 41.93 4.24
2241 2359 4.990257 CTGATAGCAGGACACAAATTTGG 58.010 43.478 21.74 12.94 38.51 3.28
2242 2360 4.661222 TGATAGCAGGACACAAATTTGGA 58.339 39.130 21.74 0.00 0.00 3.53
2243 2361 5.076182 TGATAGCAGGACACAAATTTGGAA 58.924 37.500 21.74 0.00 0.00 3.53
2244 2362 5.183713 TGATAGCAGGACACAAATTTGGAAG 59.816 40.000 21.74 13.25 0.00 3.46
2245 2363 3.565307 AGCAGGACACAAATTTGGAAGA 58.435 40.909 21.74 0.00 0.00 2.87
2246 2364 3.960102 AGCAGGACACAAATTTGGAAGAA 59.040 39.130 21.74 0.00 0.00 2.52
2247 2365 4.038402 AGCAGGACACAAATTTGGAAGAAG 59.962 41.667 21.74 8.88 0.00 2.85
2248 2366 4.301628 CAGGACACAAATTTGGAAGAAGC 58.698 43.478 21.74 4.44 0.00 3.86
2249 2367 3.004734 AGGACACAAATTTGGAAGAAGCG 59.995 43.478 21.74 3.11 0.00 4.68
2250 2368 3.243401 GGACACAAATTTGGAAGAAGCGT 60.243 43.478 21.74 5.95 0.00 5.07
2251 2369 4.023536 GGACACAAATTTGGAAGAAGCGTA 60.024 41.667 21.74 0.00 0.00 4.42
2252 2370 5.506649 GGACACAAATTTGGAAGAAGCGTAA 60.507 40.000 21.74 0.00 0.00 3.18
2253 2371 6.084326 ACACAAATTTGGAAGAAGCGTAAT 57.916 33.333 21.74 0.00 0.00 1.89
2254 2372 5.920273 ACACAAATTTGGAAGAAGCGTAATG 59.080 36.000 21.74 8.71 0.00 1.90
2255 2373 4.923281 ACAAATTTGGAAGAAGCGTAATGC 59.077 37.500 21.74 0.00 46.98 3.56
2265 2383 2.781957 CGTAATGCGCGCCTGAAA 59.218 55.556 30.77 10.13 0.00 2.69
2266 2384 1.580132 CGTAATGCGCGCCTGAAAC 60.580 57.895 30.77 17.67 0.00 2.78
2267 2385 1.226295 GTAATGCGCGCCTGAAACC 60.226 57.895 30.77 6.01 0.00 3.27
2268 2386 2.403378 TAATGCGCGCCTGAAACCC 61.403 57.895 30.77 0.00 0.00 4.11
2269 2387 2.813226 TAATGCGCGCCTGAAACCCT 62.813 55.000 30.77 3.96 0.00 4.34
2272 2390 2.668212 CGCGCCTGAAACCCTGAA 60.668 61.111 0.00 0.00 0.00 3.02
2273 2391 2.954611 GCGCCTGAAACCCTGAAC 59.045 61.111 0.00 0.00 0.00 3.18
2274 2392 1.896660 GCGCCTGAAACCCTGAACA 60.897 57.895 0.00 0.00 0.00 3.18
2275 2393 1.452145 GCGCCTGAAACCCTGAACAA 61.452 55.000 0.00 0.00 0.00 2.83
2276 2394 1.028905 CGCCTGAAACCCTGAACAAA 58.971 50.000 0.00 0.00 0.00 2.83
2277 2395 1.269051 CGCCTGAAACCCTGAACAAAC 60.269 52.381 0.00 0.00 0.00 2.93
2278 2396 2.031870 GCCTGAAACCCTGAACAAACT 58.968 47.619 0.00 0.00 0.00 2.66
2279 2397 2.034685 GCCTGAAACCCTGAACAAACTC 59.965 50.000 0.00 0.00 0.00 3.01
2280 2398 3.555966 CCTGAAACCCTGAACAAACTCT 58.444 45.455 0.00 0.00 0.00 3.24
2281 2399 3.316308 CCTGAAACCCTGAACAAACTCTG 59.684 47.826 0.00 0.00 0.00 3.35
2282 2400 3.287222 TGAAACCCTGAACAAACTCTGG 58.713 45.455 0.00 0.00 34.92 3.86
2283 2401 3.053991 TGAAACCCTGAACAAACTCTGGA 60.054 43.478 0.00 0.00 36.74 3.86
2284 2402 2.938956 ACCCTGAACAAACTCTGGAG 57.061 50.000 0.00 0.00 36.74 3.86
2285 2403 2.127708 ACCCTGAACAAACTCTGGAGT 58.872 47.619 0.00 0.00 44.94 3.85
2286 2404 2.104963 ACCCTGAACAAACTCTGGAGTC 59.895 50.000 3.60 0.00 41.58 3.36
2287 2405 2.370189 CCCTGAACAAACTCTGGAGTCT 59.630 50.000 3.60 0.00 41.58 3.24
2288 2406 3.397482 CCTGAACAAACTCTGGAGTCTG 58.603 50.000 3.60 3.22 41.58 3.51
2289 2407 3.181461 CCTGAACAAACTCTGGAGTCTGT 60.181 47.826 4.11 4.11 43.85 3.41
2290 2408 4.039245 CCTGAACAAACTCTGGAGTCTGTA 59.961 45.833 9.69 0.00 41.37 2.74
2291 2409 5.453339 CCTGAACAAACTCTGGAGTCTGTAA 60.453 44.000 9.69 2.39 41.37 2.41
2292 2410 5.601662 TGAACAAACTCTGGAGTCTGTAAG 58.398 41.667 9.69 0.00 41.37 2.34
2293 2411 4.608948 ACAAACTCTGGAGTCTGTAAGG 57.391 45.455 7.81 0.00 40.52 2.69
2294 2412 4.223953 ACAAACTCTGGAGTCTGTAAGGA 58.776 43.478 7.81 0.00 40.52 3.36
2295 2413 4.654262 ACAAACTCTGGAGTCTGTAAGGAA 59.346 41.667 7.81 0.00 40.52 3.36
2296 2414 4.875561 AACTCTGGAGTCTGTAAGGAAC 57.124 45.455 3.60 0.00 41.58 3.62
2297 2415 4.120946 ACTCTGGAGTCTGTAAGGAACT 57.879 45.455 0.00 0.00 37.42 3.01
2298 2416 3.829601 ACTCTGGAGTCTGTAAGGAACTG 59.170 47.826 0.00 0.00 35.94 3.16
2299 2417 4.082845 CTCTGGAGTCTGTAAGGAACTGA 58.917 47.826 0.00 0.00 40.86 3.41
2300 2418 4.678256 TCTGGAGTCTGTAAGGAACTGAT 58.322 43.478 0.00 0.00 40.86 2.90
2301 2419 5.087323 TCTGGAGTCTGTAAGGAACTGATT 58.913 41.667 0.00 0.00 40.86 2.57
2302 2420 5.186021 TCTGGAGTCTGTAAGGAACTGATTC 59.814 44.000 0.00 0.00 40.86 2.52
2303 2421 4.838423 TGGAGTCTGTAAGGAACTGATTCA 59.162 41.667 8.85 0.00 41.59 2.57
2304 2422 5.306937 TGGAGTCTGTAAGGAACTGATTCAA 59.693 40.000 8.85 0.00 41.59 2.69
2305 2423 6.183361 TGGAGTCTGTAAGGAACTGATTCAAA 60.183 38.462 8.85 0.00 41.59 2.69
2306 2424 6.370166 GGAGTCTGTAAGGAACTGATTCAAAG 59.630 42.308 8.85 0.00 41.59 2.77
2307 2425 6.831976 AGTCTGTAAGGAACTGATTCAAAGT 58.168 36.000 0.00 0.00 40.86 2.66
2308 2426 7.963532 AGTCTGTAAGGAACTGATTCAAAGTA 58.036 34.615 0.00 0.00 40.86 2.24
2309 2427 8.429641 AGTCTGTAAGGAACTGATTCAAAGTAA 58.570 33.333 0.00 0.00 40.86 2.24
2315 2433 6.468543 AGGAACTGATTCAAAGTAAGAGGAC 58.531 40.000 0.00 0.00 37.18 3.85
2326 2444 7.114754 TCAAAGTAAGAGGACGGATACTAGAA 58.885 38.462 0.00 0.00 0.00 2.10
2328 2446 7.571080 AAGTAAGAGGACGGATACTAGAAAG 57.429 40.000 0.00 0.00 0.00 2.62
2333 2451 3.385111 AGGACGGATACTAGAAAGGCAAG 59.615 47.826 0.00 0.00 0.00 4.01
2336 2454 4.024670 ACGGATACTAGAAAGGCAAGAGT 58.975 43.478 0.00 0.00 0.00 3.24
2441 2564 8.980610 TCACAAAATGAAACAAATGCTTATGAG 58.019 29.630 0.00 0.00 33.02 2.90
2452 2575 1.132588 GCTTATGAGAAGCTACCGCG 58.867 55.000 4.29 0.00 42.32 6.46
2460 2583 3.296709 AAGCTACCGCGACACCAGG 62.297 63.158 8.23 0.00 42.32 4.45
2479 2604 2.183555 GGAGCCTAACCGTCACCG 59.816 66.667 0.00 0.00 0.00 4.94
2494 2619 1.021202 CACCGTGTTTTCCTTCTGCA 58.979 50.000 0.00 0.00 0.00 4.41
2503 2628 4.576873 TGTTTTCCTTCTGCAATTCGTGTA 59.423 37.500 0.00 0.00 0.00 2.90
2523 2648 8.788806 TCGTGTATGTTTTCCAACTGAATAAAT 58.211 29.630 0.00 0.00 33.58 1.40
2527 2652 6.642707 TGTTTTCCAACTGAATAAATCCGT 57.357 33.333 0.00 0.00 33.58 4.69
2593 2718 3.045601 AGTCTTGATCTTTCACACCCG 57.954 47.619 0.00 0.00 0.00 5.28
2616 2741 0.866906 CAACCAACACAAGTGCTGCG 60.867 55.000 0.00 0.00 0.00 5.18
2665 2790 1.177401 GGCTGGATCTTTCAACCACC 58.823 55.000 0.00 0.00 0.00 4.61
2681 2806 1.081892 CACCTGCAGTTCTTCATCCG 58.918 55.000 13.81 0.00 0.00 4.18
2728 2901 3.207265 TGCCACTACACAACATCAACT 57.793 42.857 0.00 0.00 0.00 3.16
2794 2970 3.226429 GACAGCAGGGACGACAGCA 62.226 63.158 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.634805 AGTGTATAGACAGACATTGGTGAAG 58.365 40.000 2.50 0.00 35.82 3.02
101 102 2.254546 TGTGTGCAGTTGACCTAAGG 57.745 50.000 0.00 0.00 0.00 2.69
110 111 8.422751 TAAGAGGTCTTAGCATGTGTGCAGTT 62.423 42.308 3.03 0.00 44.09 3.16
111 112 7.026429 TAAGAGGTCTTAGCATGTGTGCAGT 62.026 44.000 3.03 0.00 44.09 4.40
112 113 4.621510 TAAGAGGTCTTAGCATGTGTGCAG 60.622 45.833 3.03 0.00 44.09 4.41
184 196 1.370437 CCGAGGAGGATGGAGCATG 59.630 63.158 0.00 0.00 45.00 4.06
242 254 1.229529 GGGAGGAGGTGGGAAGACA 60.230 63.158 0.00 0.00 0.00 3.41
261 274 3.947196 TGTGTGTGCAGTGAGAAGAAAAT 59.053 39.130 0.00 0.00 0.00 1.82
277 290 3.452627 GGATGAGGAGTAGGAATGTGTGT 59.547 47.826 0.00 0.00 0.00 3.72
282 295 3.855668 AGGAGGATGAGGAGTAGGAATG 58.144 50.000 0.00 0.00 0.00 2.67
283 296 4.488770 GAAGGAGGATGAGGAGTAGGAAT 58.511 47.826 0.00 0.00 0.00 3.01
284 297 3.374318 GGAAGGAGGATGAGGAGTAGGAA 60.374 52.174 0.00 0.00 0.00 3.36
285 298 2.178106 GGAAGGAGGATGAGGAGTAGGA 59.822 54.545 0.00 0.00 0.00 2.94
286 299 2.604139 GGAAGGAGGATGAGGAGTAGG 58.396 57.143 0.00 0.00 0.00 3.18
287 300 2.235016 CGGAAGGAGGATGAGGAGTAG 58.765 57.143 0.00 0.00 0.00 2.57
288 301 1.754555 GCGGAAGGAGGATGAGGAGTA 60.755 57.143 0.00 0.00 0.00 2.59
289 302 1.045911 GCGGAAGGAGGATGAGGAGT 61.046 60.000 0.00 0.00 0.00 3.85
290 303 1.745264 GCGGAAGGAGGATGAGGAG 59.255 63.158 0.00 0.00 0.00 3.69
303 316 4.380781 TCGACAATGGCGGCGGAA 62.381 61.111 9.25 0.00 0.00 4.30
307 320 2.202878 TAGCTCGACAATGGCGGC 60.203 61.111 9.25 11.39 0.00 6.53
308 321 1.592669 CCTAGCTCGACAATGGCGG 60.593 63.158 9.25 0.00 0.00 6.13
310 323 1.889573 GCCCTAGCTCGACAATGGC 60.890 63.158 0.00 0.00 35.50 4.40
311 324 0.811616 GTGCCCTAGCTCGACAATGG 60.812 60.000 0.00 0.00 40.80 3.16
313 326 1.264749 TGGTGCCCTAGCTCGACAAT 61.265 55.000 0.00 0.00 40.80 2.71
314 327 1.911269 TGGTGCCCTAGCTCGACAA 60.911 57.895 0.00 0.00 40.80 3.18
328 342 0.746063 ATTTGCTGTGTGTGGTGGTG 59.254 50.000 0.00 0.00 0.00 4.17
329 343 1.032014 GATTTGCTGTGTGTGGTGGT 58.968 50.000 0.00 0.00 0.00 4.16
342 356 2.035576 GCCCATCTGATGAAGGATTTGC 59.964 50.000 18.92 4.86 33.17 3.68
354 368 5.216622 AGTAGTGGTAATAAGCCCATCTGA 58.783 41.667 0.00 0.00 32.32 3.27
356 370 6.440965 GGATAGTAGTGGTAATAAGCCCATCT 59.559 42.308 0.00 0.00 32.32 2.90
426 441 2.200081 AGGTGGATGGAGTAGTGCATT 58.800 47.619 5.98 0.00 34.30 3.56
427 442 1.885049 AGGTGGATGGAGTAGTGCAT 58.115 50.000 3.94 3.94 37.46 3.96
430 445 1.137086 CGGAAGGTGGATGGAGTAGTG 59.863 57.143 0.00 0.00 0.00 2.74
434 451 0.252284 AGTCGGAAGGTGGATGGAGT 60.252 55.000 0.00 0.00 0.00 3.85
439 456 0.747255 CATCGAGTCGGAAGGTGGAT 59.253 55.000 13.54 0.00 0.00 3.41
456 473 2.045926 GGGACAAGCCTGCGACAT 60.046 61.111 0.00 0.00 36.66 3.06
496 513 3.195698 GGACAAGCCCGCGACATC 61.196 66.667 8.23 0.00 0.00 3.06
507 524 1.344763 AGTGGAACGAAGAGGGACAAG 59.655 52.381 0.00 0.00 45.86 3.16
508 525 1.343465 GAGTGGAACGAAGAGGGACAA 59.657 52.381 0.00 0.00 45.86 3.18
510 527 0.246910 GGAGTGGAACGAAGAGGGAC 59.753 60.000 0.00 0.00 45.86 4.46
513 530 0.533032 GAGGGAGTGGAACGAAGAGG 59.467 60.000 0.00 0.00 45.86 3.69
515 532 0.903454 GGGAGGGAGTGGAACGAAGA 60.903 60.000 0.00 0.00 45.86 2.87
517 534 1.916777 GGGGAGGGAGTGGAACGAA 60.917 63.158 0.00 0.00 45.86 3.85
518 535 2.284405 GGGGAGGGAGTGGAACGA 60.284 66.667 0.00 0.00 45.86 3.85
520 537 1.541620 AAGGGGGAGGGAGTGGAAC 60.542 63.158 0.00 0.00 0.00 3.62
521 538 1.229853 GAAGGGGGAGGGAGTGGAA 60.230 63.158 0.00 0.00 0.00 3.53
522 539 2.182858 GAGAAGGGGGAGGGAGTGGA 62.183 65.000 0.00 0.00 0.00 4.02
523 540 1.690985 GAGAAGGGGGAGGGAGTGG 60.691 68.421 0.00 0.00 0.00 4.00
524 541 1.690985 GGAGAAGGGGGAGGGAGTG 60.691 68.421 0.00 0.00 0.00 3.51
525 542 0.557907 TAGGAGAAGGGGGAGGGAGT 60.558 60.000 0.00 0.00 0.00 3.85
526 543 0.871024 ATAGGAGAAGGGGGAGGGAG 59.129 60.000 0.00 0.00 0.00 4.30
527 544 0.868186 GATAGGAGAAGGGGGAGGGA 59.132 60.000 0.00 0.00 0.00 4.20
569 586 5.065988 CCACCAAATTACCGAAACATAGGAG 59.934 44.000 0.00 0.00 0.00 3.69
606 623 5.200483 TCTGGCCCAAAATTTCGAGATTAT 58.800 37.500 0.00 0.00 0.00 1.28
611 629 3.731867 CGAATCTGGCCCAAAATTTCGAG 60.732 47.826 0.00 0.00 0.00 4.04
614 632 3.866883 TCGAATCTGGCCCAAAATTTC 57.133 42.857 0.00 0.00 0.00 2.17
660 682 1.134401 CATCATGTTACGGTCAGGCCT 60.134 52.381 0.00 0.00 34.25 5.19
666 688 1.737236 TGCTTGCATCATGTTACGGTC 59.263 47.619 0.00 0.00 0.00 4.79
691 713 9.788889 AGCTTCATCATGTTATATTGATCTTCA 57.211 29.630 0.00 0.00 30.24 3.02
715 737 1.530293 CATCTCCATGCGAGCTAAAGC 59.470 52.381 6.38 0.00 38.62 3.51
752 780 3.753272 CCACGCATGCCTATAATTTAGCT 59.247 43.478 13.15 0.00 0.00 3.32
753 781 3.670627 GCCACGCATGCCTATAATTTAGC 60.671 47.826 13.15 0.00 0.00 3.09
764 798 0.319211 TATACTACGCCACGCATGCC 60.319 55.000 13.15 0.00 0.00 4.40
989 1037 4.847444 GGGGAGCAAGCGAGCCTC 62.847 72.222 0.00 0.00 34.23 4.70
1564 1663 0.606401 GATGGTGTGGTGTGGTGAGG 60.606 60.000 0.00 0.00 0.00 3.86
1572 1671 2.034879 GGCTGTCGATGGTGTGGTG 61.035 63.158 0.00 0.00 0.00 4.17
1590 1691 1.293924 GAGTTGATGACCATCCGCAG 58.706 55.000 7.46 0.00 37.02 5.18
1591 1692 0.612744 TGAGTTGATGACCATCCGCA 59.387 50.000 7.46 0.00 37.02 5.69
1596 1697 3.630769 GTGCATGATGAGTTGATGACCAT 59.369 43.478 0.00 0.00 0.00 3.55
1618 1719 1.270968 CGATTTGCTAGCTCGTGCG 59.729 57.895 17.23 9.45 45.42 5.34
1622 1723 1.855360 GGAAGACGATTTGCTAGCTCG 59.145 52.381 19.73 19.73 38.34 5.03
1810 1922 2.350388 CGCAAGTTGCCTCAATTAACGT 60.350 45.455 21.84 0.00 41.12 3.99
1815 1927 2.414559 CGAATCGCAAGTTGCCTCAATT 60.415 45.455 21.84 15.21 41.12 2.32
1854 1966 0.534877 ACAGCACGGTCTCATGCAAA 60.535 50.000 0.00 0.00 44.59 3.68
1855 1967 0.320050 TACAGCACGGTCTCATGCAA 59.680 50.000 0.00 0.00 44.59 4.08
2020 2138 1.167851 TTCTTAGCATGTGCAGTGGC 58.832 50.000 7.83 0.00 45.16 5.01
2037 2155 3.680789 CTTTCGTGCGTCCCAAATATTC 58.319 45.455 0.00 0.00 0.00 1.75
2041 2159 1.579429 GCTTTCGTGCGTCCCAAAT 59.421 52.632 0.00 0.00 0.00 2.32
2042 2160 2.548295 GGCTTTCGTGCGTCCCAAA 61.548 57.895 0.00 0.00 0.00 3.28
2043 2161 2.975799 GGCTTTCGTGCGTCCCAA 60.976 61.111 0.00 0.00 0.00 4.12
2045 2163 3.119096 GAGGCTTTCGTGCGTCCC 61.119 66.667 0.00 0.00 40.63 4.46
2046 2164 2.357034 TGAGGCTTTCGTGCGTCC 60.357 61.111 14.04 0.00 44.33 4.79
2048 2166 3.036084 CGTGAGGCTTTCGTGCGT 61.036 61.111 0.00 0.00 0.00 5.24
2049 2167 3.000080 GACGTGAGGCTTTCGTGCG 62.000 63.158 19.13 7.08 37.92 5.34
2050 2168 2.853914 GACGTGAGGCTTTCGTGC 59.146 61.111 19.13 9.57 37.92 5.34
2070 2188 2.404215 CTTTGAACATCCACGAGACGT 58.596 47.619 0.00 0.00 42.36 4.34
2071 2189 1.126846 GCTTTGAACATCCACGAGACG 59.873 52.381 0.00 0.00 0.00 4.18
2072 2190 1.464997 GGCTTTGAACATCCACGAGAC 59.535 52.381 0.00 0.00 0.00 3.36
2073 2191 1.071542 TGGCTTTGAACATCCACGAGA 59.928 47.619 0.00 0.00 0.00 4.04
2074 2192 1.522668 TGGCTTTGAACATCCACGAG 58.477 50.000 0.00 0.00 0.00 4.18
2075 2193 1.974265 TTGGCTTTGAACATCCACGA 58.026 45.000 0.00 0.00 0.00 4.35
2076 2194 2.598589 CATTGGCTTTGAACATCCACG 58.401 47.619 0.00 0.00 0.00 4.94
2077 2195 2.340337 GCATTGGCTTTGAACATCCAC 58.660 47.619 0.00 0.00 36.96 4.02
2078 2196 1.275856 GGCATTGGCTTTGAACATCCA 59.724 47.619 2.42 0.00 40.87 3.41
2079 2197 1.551883 AGGCATTGGCTTTGAACATCC 59.448 47.619 6.96 0.00 40.87 3.51
2080 2198 2.028748 ACAGGCATTGGCTTTGAACATC 60.029 45.455 10.47 0.00 40.87 3.06
2081 2199 1.972795 ACAGGCATTGGCTTTGAACAT 59.027 42.857 10.47 0.00 40.87 2.71
2082 2200 1.340889 GACAGGCATTGGCTTTGAACA 59.659 47.619 10.47 0.00 40.87 3.18
2083 2201 1.340889 TGACAGGCATTGGCTTTGAAC 59.659 47.619 10.47 1.65 40.87 3.18
2084 2202 1.614903 CTGACAGGCATTGGCTTTGAA 59.385 47.619 10.47 0.00 40.87 2.69
2085 2203 1.250328 CTGACAGGCATTGGCTTTGA 58.750 50.000 10.47 0.00 40.87 2.69
2086 2204 0.963962 ACTGACAGGCATTGGCTTTG 59.036 50.000 10.47 3.95 40.87 2.77
2087 2205 1.708341 AACTGACAGGCATTGGCTTT 58.292 45.000 10.47 3.98 40.87 3.51
2088 2206 1.615392 GAAACTGACAGGCATTGGCTT 59.385 47.619 10.47 2.44 40.87 4.35
2089 2207 1.251251 GAAACTGACAGGCATTGGCT 58.749 50.000 6.96 6.96 40.87 4.75
2090 2208 0.961019 TGAAACTGACAGGCATTGGC 59.039 50.000 7.51 1.17 40.13 4.52
2091 2209 1.068055 GCTGAAACTGACAGGCATTGG 60.068 52.381 7.51 0.00 36.09 3.16
2092 2210 2.342910 GCTGAAACTGACAGGCATTG 57.657 50.000 7.51 0.00 36.09 2.82
2097 2215 2.551459 CTGAAAGGCTGAAACTGACAGG 59.449 50.000 7.51 0.00 36.09 4.00
2098 2216 2.031333 GCTGAAAGGCTGAAACTGACAG 60.031 50.000 0.00 0.00 38.27 3.51
2099 2217 1.949525 GCTGAAAGGCTGAAACTGACA 59.050 47.619 0.00 0.00 0.00 3.58
2100 2218 2.225467 AGCTGAAAGGCTGAAACTGAC 58.775 47.619 0.00 0.00 41.43 3.51
2101 2219 2.645838 AGCTGAAAGGCTGAAACTGA 57.354 45.000 0.00 0.00 41.43 3.41
2102 2220 2.161211 GCTAGCTGAAAGGCTGAAACTG 59.839 50.000 7.70 0.00 43.01 3.16
2103 2221 2.224621 TGCTAGCTGAAAGGCTGAAACT 60.225 45.455 17.23 0.00 43.01 2.66
2104 2222 2.154462 TGCTAGCTGAAAGGCTGAAAC 58.846 47.619 17.23 0.00 43.01 2.78
2105 2223 2.566833 TGCTAGCTGAAAGGCTGAAA 57.433 45.000 17.23 0.00 43.01 2.69
2106 2224 2.554032 GTTTGCTAGCTGAAAGGCTGAA 59.446 45.455 17.23 0.00 43.01 3.02
2107 2225 2.154462 GTTTGCTAGCTGAAAGGCTGA 58.846 47.619 17.23 0.00 43.01 4.26
2108 2226 1.881973 TGTTTGCTAGCTGAAAGGCTG 59.118 47.619 17.23 0.00 43.01 4.85
2109 2227 2.276732 TGTTTGCTAGCTGAAAGGCT 57.723 45.000 17.23 0.00 45.29 4.58
2110 2228 2.872370 CATGTTTGCTAGCTGAAAGGC 58.128 47.619 17.23 0.00 0.00 4.35
2111 2229 2.872370 GCATGTTTGCTAGCTGAAAGG 58.128 47.619 17.23 2.40 45.77 3.11
2125 2243 6.152932 AGATTGAAACTGAAACTGCATGTT 57.847 33.333 0.00 0.00 41.29 2.71
2126 2244 5.278660 GGAGATTGAAACTGAAACTGCATGT 60.279 40.000 0.00 0.00 0.00 3.21
2127 2245 5.048224 AGGAGATTGAAACTGAAACTGCATG 60.048 40.000 0.00 0.00 0.00 4.06
2128 2246 5.075493 AGGAGATTGAAACTGAAACTGCAT 58.925 37.500 0.00 0.00 0.00 3.96
2129 2247 4.464008 AGGAGATTGAAACTGAAACTGCA 58.536 39.130 0.00 0.00 0.00 4.41
2130 2248 5.444663 AAGGAGATTGAAACTGAAACTGC 57.555 39.130 0.00 0.00 0.00 4.40
2131 2249 5.532406 TGGAAGGAGATTGAAACTGAAACTG 59.468 40.000 0.00 0.00 0.00 3.16
2132 2250 5.694995 TGGAAGGAGATTGAAACTGAAACT 58.305 37.500 0.00 0.00 0.00 2.66
2133 2251 6.006759 CTGGAAGGAGATTGAAACTGAAAC 57.993 41.667 0.00 0.00 0.00 2.78
2152 2270 2.941025 CAGCCCTTTCCCCCTGGA 60.941 66.667 0.00 0.00 39.54 3.86
2153 2271 4.066139 CCAGCCCTTTCCCCCTGG 62.066 72.222 0.00 0.00 38.93 4.45
2154 2272 3.268032 ACCAGCCCTTTCCCCCTG 61.268 66.667 0.00 0.00 0.00 4.45
2155 2273 3.268032 CACCAGCCCTTTCCCCCT 61.268 66.667 0.00 0.00 0.00 4.79
2156 2274 2.380571 TTTCACCAGCCCTTTCCCCC 62.381 60.000 0.00 0.00 0.00 5.40
2157 2275 1.155155 TTTCACCAGCCCTTTCCCC 59.845 57.895 0.00 0.00 0.00 4.81
2158 2276 0.469144 TGTTTCACCAGCCCTTTCCC 60.469 55.000 0.00 0.00 0.00 3.97
2159 2277 1.068588 GTTGTTTCACCAGCCCTTTCC 59.931 52.381 0.00 0.00 0.00 3.13
2160 2278 2.031870 AGTTGTTTCACCAGCCCTTTC 58.968 47.619 0.00 0.00 0.00 2.62
2161 2279 2.159179 AGTTGTTTCACCAGCCCTTT 57.841 45.000 0.00 0.00 0.00 3.11
2162 2280 2.441750 TCTAGTTGTTTCACCAGCCCTT 59.558 45.455 0.00 0.00 0.00 3.95
2163 2281 2.054799 TCTAGTTGTTTCACCAGCCCT 58.945 47.619 0.00 0.00 0.00 5.19
2164 2282 2.152016 GTCTAGTTGTTTCACCAGCCC 58.848 52.381 0.00 0.00 0.00 5.19
2165 2283 1.798813 CGTCTAGTTGTTTCACCAGCC 59.201 52.381 0.00 0.00 0.00 4.85
2166 2284 2.221055 CACGTCTAGTTGTTTCACCAGC 59.779 50.000 0.00 0.00 0.00 4.85
2167 2285 2.221055 GCACGTCTAGTTGTTTCACCAG 59.779 50.000 0.00 0.00 0.00 4.00
2168 2286 2.206750 GCACGTCTAGTTGTTTCACCA 58.793 47.619 0.00 0.00 0.00 4.17
2169 2287 2.033151 GTGCACGTCTAGTTGTTTCACC 60.033 50.000 0.00 0.00 0.00 4.02
2170 2288 2.033151 GGTGCACGTCTAGTTGTTTCAC 60.033 50.000 11.45 1.20 0.00 3.18
2171 2289 2.206750 GGTGCACGTCTAGTTGTTTCA 58.793 47.619 11.45 0.00 0.00 2.69
2172 2290 2.206750 TGGTGCACGTCTAGTTGTTTC 58.793 47.619 11.45 0.00 0.00 2.78
2173 2291 2.319136 TGGTGCACGTCTAGTTGTTT 57.681 45.000 11.45 0.00 0.00 2.83
2174 2292 1.937899 GTTGGTGCACGTCTAGTTGTT 59.062 47.619 11.45 0.00 0.00 2.83
2175 2293 1.134640 TGTTGGTGCACGTCTAGTTGT 60.135 47.619 11.45 0.00 0.00 3.32
2176 2294 1.260561 GTGTTGGTGCACGTCTAGTTG 59.739 52.381 11.45 0.00 0.00 3.16
2177 2295 1.138266 AGTGTTGGTGCACGTCTAGTT 59.862 47.619 11.45 0.00 43.61 2.24
2178 2296 0.750850 AGTGTTGGTGCACGTCTAGT 59.249 50.000 11.45 0.00 43.61 2.57
2179 2297 1.419374 GAGTGTTGGTGCACGTCTAG 58.581 55.000 11.45 0.00 43.61 2.43
2180 2298 0.032952 GGAGTGTTGGTGCACGTCTA 59.967 55.000 11.45 0.00 43.61 2.59
2181 2299 1.227556 GGAGTGTTGGTGCACGTCT 60.228 57.895 11.45 4.27 43.61 4.18
2182 2300 1.092921 TTGGAGTGTTGGTGCACGTC 61.093 55.000 11.45 4.22 43.61 4.34
2183 2301 1.078072 TTGGAGTGTTGGTGCACGT 60.078 52.632 11.45 0.00 43.61 4.49
2184 2302 1.355210 GTTGGAGTGTTGGTGCACG 59.645 57.895 11.45 0.00 43.61 5.34
2185 2303 0.381801 CTGTTGGAGTGTTGGTGCAC 59.618 55.000 8.80 8.80 39.51 4.57
2186 2304 0.034574 ACTGTTGGAGTGTTGGTGCA 60.035 50.000 0.00 0.00 31.75 4.57
2187 2305 1.065551 GAACTGTTGGAGTGTTGGTGC 59.934 52.381 0.00 0.00 34.02 5.01
2188 2306 2.355756 CTGAACTGTTGGAGTGTTGGTG 59.644 50.000 0.00 0.00 34.02 4.17
2189 2307 2.643551 CTGAACTGTTGGAGTGTTGGT 58.356 47.619 0.00 0.00 34.02 3.67
2190 2308 1.334869 GCTGAACTGTTGGAGTGTTGG 59.665 52.381 0.00 0.00 34.02 3.77
2191 2309 2.016318 TGCTGAACTGTTGGAGTGTTG 58.984 47.619 0.00 0.00 34.02 3.33
2192 2310 2.418368 TGCTGAACTGTTGGAGTGTT 57.582 45.000 0.00 0.00 34.02 3.32
2193 2311 2.224606 CATGCTGAACTGTTGGAGTGT 58.775 47.619 0.00 0.00 34.02 3.55
2194 2312 1.538512 CCATGCTGAACTGTTGGAGTG 59.461 52.381 0.00 0.00 34.02 3.51
2195 2313 1.143684 ACCATGCTGAACTGTTGGAGT 59.856 47.619 0.00 0.00 35.94 3.85
2196 2314 1.901591 ACCATGCTGAACTGTTGGAG 58.098 50.000 0.00 0.00 0.00 3.86
2197 2315 2.363306 AACCATGCTGAACTGTTGGA 57.637 45.000 0.00 0.00 0.00 3.53
2198 2316 2.228822 GGTAACCATGCTGAACTGTTGG 59.771 50.000 0.00 0.00 0.00 3.77
2199 2317 3.058016 CAGGTAACCATGCTGAACTGTTG 60.058 47.826 0.00 0.00 37.17 3.33
2200 2318 3.149196 CAGGTAACCATGCTGAACTGTT 58.851 45.455 0.00 0.00 37.17 3.16
2201 2319 2.371841 TCAGGTAACCATGCTGAACTGT 59.628 45.455 0.00 0.00 37.17 3.55
2202 2320 3.057969 TCAGGTAACCATGCTGAACTG 57.942 47.619 0.00 0.00 37.17 3.16
2203 2321 4.684485 GCTATCAGGTAACCATGCTGAACT 60.684 45.833 4.40 0.00 37.17 3.01
2204 2322 3.561725 GCTATCAGGTAACCATGCTGAAC 59.438 47.826 4.40 0.00 37.17 3.18
2205 2323 3.199727 TGCTATCAGGTAACCATGCTGAA 59.800 43.478 4.40 0.00 37.17 3.02
2206 2324 2.771372 TGCTATCAGGTAACCATGCTGA 59.229 45.455 2.95 2.95 37.17 4.26
2207 2325 3.136763 CTGCTATCAGGTAACCATGCTG 58.863 50.000 0.00 0.00 36.68 4.41
2208 2326 3.482156 CTGCTATCAGGTAACCATGCT 57.518 47.619 0.00 0.00 36.68 3.79
2219 2337 4.701651 TCCAAATTTGTGTCCTGCTATCAG 59.298 41.667 16.73 0.00 40.02 2.90
2220 2338 4.661222 TCCAAATTTGTGTCCTGCTATCA 58.339 39.130 16.73 0.00 0.00 2.15
2221 2339 5.415701 TCTTCCAAATTTGTGTCCTGCTATC 59.584 40.000 16.73 0.00 0.00 2.08
2222 2340 5.324409 TCTTCCAAATTTGTGTCCTGCTAT 58.676 37.500 16.73 0.00 0.00 2.97
2223 2341 4.724399 TCTTCCAAATTTGTGTCCTGCTA 58.276 39.130 16.73 0.00 0.00 3.49
2224 2342 3.565307 TCTTCCAAATTTGTGTCCTGCT 58.435 40.909 16.73 0.00 0.00 4.24
2225 2343 4.301628 CTTCTTCCAAATTTGTGTCCTGC 58.698 43.478 16.73 0.00 0.00 4.85
2226 2344 4.301628 GCTTCTTCCAAATTTGTGTCCTG 58.698 43.478 16.73 0.81 0.00 3.86
2227 2345 3.004734 CGCTTCTTCCAAATTTGTGTCCT 59.995 43.478 16.73 0.00 0.00 3.85
2228 2346 3.243401 ACGCTTCTTCCAAATTTGTGTCC 60.243 43.478 16.73 0.00 0.00 4.02
2229 2347 3.964909 ACGCTTCTTCCAAATTTGTGTC 58.035 40.909 16.73 0.00 0.00 3.67
2230 2348 5.508200 TTACGCTTCTTCCAAATTTGTGT 57.492 34.783 16.73 5.77 0.00 3.72
2231 2349 5.164061 GCATTACGCTTCTTCCAAATTTGTG 60.164 40.000 16.73 8.58 37.77 3.33
2232 2350 4.923281 GCATTACGCTTCTTCCAAATTTGT 59.077 37.500 16.73 0.00 37.77 2.83
2233 2351 4.030529 CGCATTACGCTTCTTCCAAATTTG 59.969 41.667 11.40 11.40 39.08 2.32
2234 2352 4.165779 CGCATTACGCTTCTTCCAAATTT 58.834 39.130 0.00 0.00 39.08 1.82
2235 2353 3.758300 CGCATTACGCTTCTTCCAAATT 58.242 40.909 0.00 0.00 39.08 1.82
2236 2354 3.405170 CGCATTACGCTTCTTCCAAAT 57.595 42.857 0.00 0.00 39.08 2.32
2237 2355 2.892373 CGCATTACGCTTCTTCCAAA 57.108 45.000 0.00 0.00 39.08 3.28
2249 2367 1.226295 GGTTTCAGGCGCGCATTAC 60.226 57.895 34.42 21.86 0.00 1.89
2250 2368 2.403378 GGGTTTCAGGCGCGCATTA 61.403 57.895 34.42 16.00 0.00 1.90
2251 2369 3.747976 GGGTTTCAGGCGCGCATT 61.748 61.111 34.42 18.08 0.00 3.56
2252 2370 4.722700 AGGGTTTCAGGCGCGCAT 62.723 61.111 34.42 26.01 0.00 4.73
2255 2373 2.668212 TTCAGGGTTTCAGGCGCG 60.668 61.111 0.00 0.00 0.00 6.86
2256 2374 1.452145 TTGTTCAGGGTTTCAGGCGC 61.452 55.000 0.00 0.00 0.00 6.53
2257 2375 1.028905 TTTGTTCAGGGTTTCAGGCG 58.971 50.000 0.00 0.00 0.00 5.52
2258 2376 2.031870 AGTTTGTTCAGGGTTTCAGGC 58.968 47.619 0.00 0.00 0.00 4.85
2259 2377 3.316308 CAGAGTTTGTTCAGGGTTTCAGG 59.684 47.826 0.00 0.00 0.00 3.86
2260 2378 3.316308 CCAGAGTTTGTTCAGGGTTTCAG 59.684 47.826 0.00 0.00 0.00 3.02
2261 2379 3.053991 TCCAGAGTTTGTTCAGGGTTTCA 60.054 43.478 0.00 0.00 0.00 2.69
2262 2380 3.551846 TCCAGAGTTTGTTCAGGGTTTC 58.448 45.455 0.00 0.00 0.00 2.78
2263 2381 3.053619 ACTCCAGAGTTTGTTCAGGGTTT 60.054 43.478 0.00 0.00 38.83 3.27
2264 2382 2.509964 ACTCCAGAGTTTGTTCAGGGTT 59.490 45.455 0.00 0.00 38.83 4.11
2265 2383 2.104963 GACTCCAGAGTTTGTTCAGGGT 59.895 50.000 1.08 0.00 42.66 4.34
2266 2384 2.370189 AGACTCCAGAGTTTGTTCAGGG 59.630 50.000 1.08 0.00 42.66 4.45
2267 2385 3.397482 CAGACTCCAGAGTTTGTTCAGG 58.603 50.000 9.57 0.00 42.66 3.86
2273 2391 4.873746 TCCTTACAGACTCCAGAGTTTG 57.126 45.455 14.83 14.83 45.72 2.93
2274 2392 4.902448 AGTTCCTTACAGACTCCAGAGTTT 59.098 41.667 1.08 0.00 42.66 2.66
2275 2393 4.282195 CAGTTCCTTACAGACTCCAGAGTT 59.718 45.833 1.08 0.00 42.66 3.01
2276 2394 3.829601 CAGTTCCTTACAGACTCCAGAGT 59.170 47.826 0.00 0.00 45.84 3.24
2277 2395 4.082845 TCAGTTCCTTACAGACTCCAGAG 58.917 47.826 0.00 0.00 0.00 3.35
2278 2396 4.114015 TCAGTTCCTTACAGACTCCAGA 57.886 45.455 0.00 0.00 0.00 3.86
2279 2397 5.047021 TGAATCAGTTCCTTACAGACTCCAG 60.047 44.000 0.00 0.00 33.26 3.86
2280 2398 4.838423 TGAATCAGTTCCTTACAGACTCCA 59.162 41.667 0.00 0.00 33.26 3.86
2281 2399 5.407407 TGAATCAGTTCCTTACAGACTCC 57.593 43.478 0.00 0.00 33.26 3.85
2282 2400 6.931840 ACTTTGAATCAGTTCCTTACAGACTC 59.068 38.462 0.00 0.00 33.26 3.36
2283 2401 6.831976 ACTTTGAATCAGTTCCTTACAGACT 58.168 36.000 0.00 0.00 33.26 3.24
2284 2402 8.603242 TTACTTTGAATCAGTTCCTTACAGAC 57.397 34.615 0.00 0.00 33.26 3.51
2285 2403 8.647796 TCTTACTTTGAATCAGTTCCTTACAGA 58.352 33.333 0.00 0.00 33.26 3.41
2286 2404 8.833231 TCTTACTTTGAATCAGTTCCTTACAG 57.167 34.615 0.00 0.00 33.26 2.74
2287 2405 7.878127 CCTCTTACTTTGAATCAGTTCCTTACA 59.122 37.037 0.00 0.00 33.26 2.41
2288 2406 8.095169 TCCTCTTACTTTGAATCAGTTCCTTAC 58.905 37.037 0.00 0.00 33.26 2.34
2289 2407 8.095169 GTCCTCTTACTTTGAATCAGTTCCTTA 58.905 37.037 0.00 0.00 33.26 2.69
2290 2408 6.937465 GTCCTCTTACTTTGAATCAGTTCCTT 59.063 38.462 0.00 0.00 33.26 3.36
2291 2409 6.468543 GTCCTCTTACTTTGAATCAGTTCCT 58.531 40.000 0.00 0.00 33.26 3.36
2292 2410 5.348997 CGTCCTCTTACTTTGAATCAGTTCC 59.651 44.000 0.00 0.00 33.26 3.62
2293 2411 5.348997 CCGTCCTCTTACTTTGAATCAGTTC 59.651 44.000 0.00 0.00 34.85 3.01
2294 2412 5.011738 TCCGTCCTCTTACTTTGAATCAGTT 59.988 40.000 0.00 0.00 0.00 3.16
2295 2413 4.527038 TCCGTCCTCTTACTTTGAATCAGT 59.473 41.667 0.00 0.00 0.00 3.41
2296 2414 5.073311 TCCGTCCTCTTACTTTGAATCAG 57.927 43.478 0.00 0.00 0.00 2.90
2297 2415 5.677319 ATCCGTCCTCTTACTTTGAATCA 57.323 39.130 0.00 0.00 0.00 2.57
2298 2416 6.807789 AGTATCCGTCCTCTTACTTTGAATC 58.192 40.000 0.00 0.00 0.00 2.52
2299 2417 6.793505 AGTATCCGTCCTCTTACTTTGAAT 57.206 37.500 0.00 0.00 0.00 2.57
2300 2418 7.114754 TCTAGTATCCGTCCTCTTACTTTGAA 58.885 38.462 0.00 0.00 0.00 2.69
2301 2419 6.656902 TCTAGTATCCGTCCTCTTACTTTGA 58.343 40.000 0.00 0.00 0.00 2.69
2302 2420 6.939132 TCTAGTATCCGTCCTCTTACTTTG 57.061 41.667 0.00 0.00 0.00 2.77
2303 2421 7.068470 CCTTTCTAGTATCCGTCCTCTTACTTT 59.932 40.741 0.00 0.00 0.00 2.66
2304 2422 6.546772 CCTTTCTAGTATCCGTCCTCTTACTT 59.453 42.308 0.00 0.00 0.00 2.24
2305 2423 6.063404 CCTTTCTAGTATCCGTCCTCTTACT 58.937 44.000 0.00 0.00 0.00 2.24
2306 2424 5.278414 GCCTTTCTAGTATCCGTCCTCTTAC 60.278 48.000 0.00 0.00 0.00 2.34
2307 2425 4.826183 GCCTTTCTAGTATCCGTCCTCTTA 59.174 45.833 0.00 0.00 0.00 2.10
2308 2426 3.637694 GCCTTTCTAGTATCCGTCCTCTT 59.362 47.826 0.00 0.00 0.00 2.85
2309 2427 3.224269 GCCTTTCTAGTATCCGTCCTCT 58.776 50.000 0.00 0.00 0.00 3.69
2315 2433 4.098044 TGACTCTTGCCTTTCTAGTATCCG 59.902 45.833 0.00 0.00 0.00 4.18
2326 2444 4.210331 AGATTGTTTGTGACTCTTGCCTT 58.790 39.130 0.00 0.00 0.00 4.35
2328 2446 3.817647 AGAGATTGTTTGTGACTCTTGCC 59.182 43.478 0.00 0.00 34.85 4.52
2333 2451 5.297547 TGGTGTAGAGATTGTTTGTGACTC 58.702 41.667 0.00 0.00 0.00 3.36
2336 2454 5.705441 GGATTGGTGTAGAGATTGTTTGTGA 59.295 40.000 0.00 0.00 0.00 3.58
2441 2564 1.805945 CTGGTGTCGCGGTAGCTTC 60.806 63.158 6.13 0.00 42.32 3.86
2479 2604 3.730715 CACGAATTGCAGAAGGAAAACAC 59.269 43.478 0.00 0.00 0.00 3.32
2494 2619 6.627395 TCAGTTGGAAAACATACACGAATT 57.373 33.333 0.00 0.00 0.00 2.17
2503 2628 7.227049 ACGGATTTATTCAGTTGGAAAACAT 57.773 32.000 0.00 0.00 39.39 2.71
2523 2648 3.992943 ATGTGGATTTACCTGAACGGA 57.007 42.857 0.00 0.00 39.86 4.69
2527 2652 5.389520 TGGAACAATGTGGATTTACCTGAA 58.610 37.500 0.00 0.00 35.49 3.02
2593 2718 0.102300 GCACTTGTGTTGGTTGGGTC 59.898 55.000 2.61 0.00 0.00 4.46
2616 2741 1.467734 CAGAATGTTCTGCACTCTGCC 59.532 52.381 9.59 0.00 43.22 4.85
2665 2790 1.813513 AACCGGATGAAGAACTGCAG 58.186 50.000 13.48 13.48 0.00 4.41
2681 2806 3.429410 GGCATGCAGTGGATTCTTTAACC 60.429 47.826 21.36 0.00 0.00 2.85
2728 2901 0.250467 GAAGTTCCAGCTCTGTGCCA 60.250 55.000 0.00 0.00 44.23 4.92
2773 2946 4.436998 GTCGTCCCTGCTGTCCCG 62.437 72.222 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.