Multiple sequence alignment - TraesCS2B01G179000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G179000 chr2B 100.000 3643 0 0 1 3643 153891180 153894822 0.000000e+00 6728
1 TraesCS2B01G179000 chr2B 97.465 355 8 1 57 410 153891062 153890708 4.020000e-169 604
2 TraesCS2B01G179000 chr2B 90.882 340 28 1 2369 2705 692398457 692398118 1.540000e-123 453
3 TraesCS2B01G179000 chr2B 94.146 205 9 2 2143 2344 692398784 692398580 3.530000e-80 309
4 TraesCS2B01G179000 chr2D 91.722 1812 95 18 528 2318 102643317 102645094 0.000000e+00 2464
5 TraesCS2B01G179000 chr2D 92.913 635 39 3 2375 3004 102645197 102645830 0.000000e+00 918
6 TraesCS2B01G179000 chr2D 96.011 351 12 2 58 406 534852149 534851799 1.470000e-158 569
7 TraesCS2B01G179000 chr2D 94.225 329 16 3 3316 3643 102645839 102646165 1.950000e-137 499
8 TraesCS2B01G179000 chr2D 89.109 101 6 4 414 513 102643170 102643266 1.780000e-23 121
9 TraesCS2B01G179000 chr2A 88.710 1240 86 30 1115 2318 101799505 101800726 0.000000e+00 1465
10 TraesCS2B01G179000 chr2A 81.857 700 77 28 472 1162 101798972 101799630 8.900000e-151 544
11 TraesCS2B01G179000 chr2A 87.069 464 35 10 2597 3055 101801096 101801539 5.430000e-138 501
12 TraesCS2B01G179000 chr2A 94.981 259 13 0 2369 2627 101800820 101801078 1.220000e-109 407
13 TraesCS2B01G179000 chr2A 90.127 314 16 7 3325 3625 101824080 101824391 9.480000e-106 394
14 TraesCS2B01G179000 chr6B 96.591 352 9 3 58 407 123831553 123831203 6.780000e-162 580
15 TraesCS2B01G179000 chr1D 96.581 351 10 2 58 406 359693533 359693183 6.780000e-162 580
16 TraesCS2B01G179000 chr1D 94.766 363 17 2 53 413 7424180 7423818 6.830000e-157 564
17 TraesCS2B01G179000 chr3B 96.067 356 12 2 58 411 154187214 154186859 2.440000e-161 579
18 TraesCS2B01G179000 chr5B 95.763 354 12 3 52 403 498221127 498221479 5.280000e-158 568
19 TraesCS2B01G179000 chr5B 94.505 364 18 2 52 413 544803440 544803077 8.830000e-156 560
20 TraesCS2B01G179000 chr4B 95.751 353 13 2 56 406 643289163 643289515 5.280000e-158 568


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G179000 chr2B 153891180 153894822 3642 False 6728.00 6728 100.00000 1 3643 1 chr2B.!!$F1 3642
1 TraesCS2B01G179000 chr2B 692398118 692398784 666 True 381.00 453 92.51400 2143 2705 2 chr2B.!!$R2 562
2 TraesCS2B01G179000 chr2D 102643170 102646165 2995 False 1000.50 2464 91.99225 414 3643 4 chr2D.!!$F1 3229
3 TraesCS2B01G179000 chr2A 101798972 101801539 2567 False 729.25 1465 88.15425 472 3055 4 chr2A.!!$F2 2583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.178992 CCTGACTTTTGAGCCCACCA 60.179 55.0 0.0 0.0 0.0 4.17 F
1261 1308 0.036732 AGTGGAGAATTTGCCTGCGA 59.963 50.0 0.0 0.0 0.0 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2153 0.323269 TCCCTGCAATGCATTCGGAA 60.323 50.0 8.91 0.0 38.13 4.30 R
3156 3407 0.032952 TAGACGTGCACCAACACTCC 59.967 55.0 12.15 0.0 38.45 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.708051 CACTCCAGACATTGACATGCT 58.292 47.619 0.00 0.00 33.05 3.79
21 22 2.418976 CACTCCAGACATTGACATGCTG 59.581 50.000 0.00 0.00 35.74 4.41
22 23 2.039480 ACTCCAGACATTGACATGCTGT 59.961 45.455 0.00 0.00 34.91 4.40
23 24 3.079578 CTCCAGACATTGACATGCTGTT 58.920 45.455 0.00 0.00 34.91 3.16
24 25 3.076621 TCCAGACATTGACATGCTGTTC 58.923 45.455 0.00 0.00 34.91 3.18
25 26 3.079578 CCAGACATTGACATGCTGTTCT 58.920 45.455 0.00 0.00 34.91 3.01
26 27 3.126514 CCAGACATTGACATGCTGTTCTC 59.873 47.826 0.00 0.00 34.91 2.87
27 28 4.001652 CAGACATTGACATGCTGTTCTCT 58.998 43.478 0.00 0.00 33.39 3.10
28 29 5.173664 CAGACATTGACATGCTGTTCTCTA 58.826 41.667 0.00 0.00 33.39 2.43
29 30 5.816258 CAGACATTGACATGCTGTTCTCTAT 59.184 40.000 0.00 0.00 33.39 1.98
30 31 6.018913 CAGACATTGACATGCTGTTCTCTATC 60.019 42.308 0.00 0.00 33.39 2.08
31 32 5.121811 ACATTGACATGCTGTTCTCTATCC 58.878 41.667 0.00 0.00 33.05 2.59
32 33 5.104610 ACATTGACATGCTGTTCTCTATCCT 60.105 40.000 0.00 0.00 33.05 3.24
33 34 4.397481 TGACATGCTGTTCTCTATCCTG 57.603 45.455 0.00 0.00 0.00 3.86
34 35 3.129871 GACATGCTGTTCTCTATCCTGC 58.870 50.000 0.00 0.00 0.00 4.85
35 36 2.502947 ACATGCTGTTCTCTATCCTGCA 59.497 45.455 0.00 0.00 37.44 4.41
36 37 2.975732 TGCTGTTCTCTATCCTGCAG 57.024 50.000 6.78 6.78 0.00 4.41
37 38 1.134580 TGCTGTTCTCTATCCTGCAGC 60.135 52.381 8.66 7.31 46.47 5.25
38 39 1.809651 GCTGTTCTCTATCCTGCAGCC 60.810 57.143 8.66 0.00 42.21 4.85
39 40 0.461548 TGTTCTCTATCCTGCAGCCG 59.538 55.000 8.66 0.00 0.00 5.52
40 41 0.461961 GTTCTCTATCCTGCAGCCGT 59.538 55.000 8.66 0.00 0.00 5.68
41 42 0.747255 TTCTCTATCCTGCAGCCGTC 59.253 55.000 8.66 0.00 0.00 4.79
42 43 1.007964 CTCTATCCTGCAGCCGTCG 60.008 63.158 8.66 0.00 0.00 5.12
43 44 2.028190 CTATCCTGCAGCCGTCGG 59.972 66.667 8.66 6.99 0.00 4.79
44 45 2.441348 TATCCTGCAGCCGTCGGA 60.441 61.111 17.49 0.00 0.00 4.55
45 46 2.413437 CTATCCTGCAGCCGTCGGAG 62.413 65.000 17.49 7.69 0.00 4.63
46 47 2.904178 TATCCTGCAGCCGTCGGAGA 62.904 60.000 17.49 0.00 0.00 3.71
60 61 3.573626 GGAGACGAGTGGGACTAGT 57.426 57.895 0.00 0.00 36.76 2.57
61 62 1.381522 GGAGACGAGTGGGACTAGTC 58.618 60.000 14.87 14.87 46.73 2.59
71 72 3.232279 GGACTAGTCCTGGCCATCT 57.768 57.895 31.12 8.22 46.16 2.90
72 73 1.044611 GGACTAGTCCTGGCCATCTC 58.955 60.000 31.12 3.83 46.16 2.75
73 74 1.689575 GGACTAGTCCTGGCCATCTCA 60.690 57.143 31.12 0.00 46.16 3.27
74 75 1.686052 GACTAGTCCTGGCCATCTCAG 59.314 57.143 5.51 2.71 0.00 3.35
110 111 4.342086 ACCCAGGCCCGACCCTAA 62.342 66.667 0.00 0.00 40.58 2.69
111 112 3.012722 CCCAGGCCCGACCCTAAA 61.013 66.667 0.00 0.00 40.58 1.85
112 113 2.608550 CCCAGGCCCGACCCTAAAA 61.609 63.158 0.00 0.00 40.58 1.52
113 114 1.613061 CCAGGCCCGACCCTAAAAT 59.387 57.895 0.00 0.00 40.58 1.82
114 115 0.465642 CCAGGCCCGACCCTAAAATC 60.466 60.000 0.00 0.00 40.58 2.17
115 116 0.465642 CAGGCCCGACCCTAAAATCC 60.466 60.000 0.00 0.00 40.58 3.01
116 117 0.917333 AGGCCCGACCCTAAAATCCA 60.917 55.000 0.00 0.00 40.58 3.41
117 118 0.465642 GGCCCGACCCTAAAATCCAG 60.466 60.000 0.00 0.00 0.00 3.86
118 119 0.465642 GCCCGACCCTAAAATCCAGG 60.466 60.000 0.00 0.00 0.00 4.45
124 125 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
125 126 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
126 127 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
169 170 2.732289 GCTTGGGCCTGACTTTTGA 58.268 52.632 4.53 0.00 0.00 2.69
170 171 0.600057 GCTTGGGCCTGACTTTTGAG 59.400 55.000 4.53 0.00 0.00 3.02
171 172 0.600057 CTTGGGCCTGACTTTTGAGC 59.400 55.000 4.53 0.00 0.00 4.26
172 173 0.827507 TTGGGCCTGACTTTTGAGCC 60.828 55.000 4.53 0.00 43.09 4.70
173 174 3.686760 GGCCTGACTTTTGAGCCC 58.313 61.111 0.00 0.00 37.66 5.19
174 175 1.228552 GGCCTGACTTTTGAGCCCA 60.229 57.895 0.00 0.00 37.66 5.36
175 176 1.527433 GGCCTGACTTTTGAGCCCAC 61.527 60.000 0.00 0.00 37.66 4.61
176 177 1.527433 GCCTGACTTTTGAGCCCACC 61.527 60.000 0.00 0.00 0.00 4.61
177 178 0.178992 CCTGACTTTTGAGCCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
178 179 1.242076 CTGACTTTTGAGCCCACCAG 58.758 55.000 0.00 0.00 0.00 4.00
179 180 0.550914 TGACTTTTGAGCCCACCAGT 59.449 50.000 0.00 0.00 0.00 4.00
180 181 1.771854 TGACTTTTGAGCCCACCAGTA 59.228 47.619 0.00 0.00 0.00 2.74
181 182 2.224523 TGACTTTTGAGCCCACCAGTAG 60.225 50.000 0.00 0.00 0.00 2.57
182 183 1.073923 ACTTTTGAGCCCACCAGTAGG 59.926 52.381 0.00 0.00 42.21 3.18
193 194 3.470888 CAGTAGGGCCTGGACGGG 61.471 72.222 18.53 1.44 0.00 5.28
194 195 3.680196 AGTAGGGCCTGGACGGGA 61.680 66.667 18.53 0.00 0.00 5.14
195 196 2.446036 GTAGGGCCTGGACGGGAT 60.446 66.667 18.53 0.00 0.00 3.85
196 197 2.070650 GTAGGGCCTGGACGGGATT 61.071 63.158 18.53 0.00 0.00 3.01
197 198 2.070039 TAGGGCCTGGACGGGATTG 61.070 63.158 18.53 0.00 0.00 2.67
198 199 4.506255 GGGCCTGGACGGGATTGG 62.506 72.222 0.84 0.00 0.00 3.16
200 201 4.115199 GCCTGGACGGGATTGGCT 62.115 66.667 0.00 0.00 40.36 4.75
201 202 2.677228 CCTGGACGGGATTGGCTT 59.323 61.111 0.00 0.00 0.00 4.35
202 203 1.750399 CCTGGACGGGATTGGCTTG 60.750 63.158 0.00 0.00 0.00 4.01
203 204 1.750399 CTGGACGGGATTGGCTTGG 60.750 63.158 0.00 0.00 0.00 3.61
204 205 3.140814 GGACGGGATTGGCTTGGC 61.141 66.667 0.00 0.00 0.00 4.52
205 206 2.361104 GACGGGATTGGCTTGGCA 60.361 61.111 0.00 0.00 0.00 4.92
206 207 1.754234 GACGGGATTGGCTTGGCAT 60.754 57.895 0.00 0.00 0.00 4.40
207 208 0.465460 GACGGGATTGGCTTGGCATA 60.465 55.000 0.00 0.00 0.00 3.14
208 209 0.185901 ACGGGATTGGCTTGGCATAT 59.814 50.000 0.00 0.00 0.00 1.78
209 210 1.331214 CGGGATTGGCTTGGCATATT 58.669 50.000 0.00 0.00 0.00 1.28
210 211 1.000060 CGGGATTGGCTTGGCATATTG 60.000 52.381 0.00 0.00 0.00 1.90
211 212 1.345415 GGGATTGGCTTGGCATATTGG 59.655 52.381 0.00 0.00 0.00 3.16
212 213 1.270465 GGATTGGCTTGGCATATTGGC 60.270 52.381 0.00 0.00 44.03 4.52
225 226 6.160576 GGCATATTGGCATTTTAAGGAAGA 57.839 37.500 0.00 0.00 43.14 2.87
226 227 6.218746 GGCATATTGGCATTTTAAGGAAGAG 58.781 40.000 0.00 0.00 43.14 2.85
227 228 6.218746 GCATATTGGCATTTTAAGGAAGAGG 58.781 40.000 0.00 0.00 0.00 3.69
228 229 4.743057 ATTGGCATTTTAAGGAAGAGGC 57.257 40.909 0.00 0.00 0.00 4.70
229 230 2.456577 TGGCATTTTAAGGAAGAGGCC 58.543 47.619 0.00 0.00 40.51 5.19
230 231 1.757118 GGCATTTTAAGGAAGAGGCCC 59.243 52.381 0.00 0.00 34.17 5.80
231 232 1.405463 GCATTTTAAGGAAGAGGCCCG 59.595 52.381 0.00 0.00 0.00 6.13
232 233 2.024414 CATTTTAAGGAAGAGGCCCGG 58.976 52.381 0.00 0.00 0.00 5.73
233 234 0.323087 TTTTAAGGAAGAGGCCCGGC 60.323 55.000 0.00 0.00 0.00 6.13
267 268 3.101643 CCTTAAGGGCTTTTTAGGGCT 57.898 47.619 14.25 0.00 0.00 5.19
268 269 3.441101 CCTTAAGGGCTTTTTAGGGCTT 58.559 45.455 14.25 0.00 0.00 4.35
269 270 3.838317 CCTTAAGGGCTTTTTAGGGCTTT 59.162 43.478 14.25 0.00 33.62 3.51
270 271 4.286032 CCTTAAGGGCTTTTTAGGGCTTTT 59.714 41.667 14.25 0.00 31.74 2.27
271 272 5.221843 CCTTAAGGGCTTTTTAGGGCTTTTT 60.222 40.000 14.25 0.00 31.74 1.94
272 273 6.014070 CCTTAAGGGCTTTTTAGGGCTTTTTA 60.014 38.462 14.25 0.00 31.74 1.52
273 274 4.884668 AGGGCTTTTTAGGGCTTTTTAC 57.115 40.909 0.00 0.00 0.00 2.01
274 275 3.581332 AGGGCTTTTTAGGGCTTTTTACC 59.419 43.478 0.00 0.00 0.00 2.85
275 276 3.325425 GGGCTTTTTAGGGCTTTTTACCA 59.675 43.478 0.00 0.00 0.00 3.25
276 277 4.562757 GGGCTTTTTAGGGCTTTTTACCAG 60.563 45.833 0.00 0.00 0.00 4.00
277 278 4.282449 GGCTTTTTAGGGCTTTTTACCAGA 59.718 41.667 0.00 0.00 0.00 3.86
278 279 5.046591 GGCTTTTTAGGGCTTTTTACCAGAT 60.047 40.000 0.00 0.00 0.00 2.90
279 280 5.869344 GCTTTTTAGGGCTTTTTACCAGATG 59.131 40.000 0.00 0.00 0.00 2.90
280 281 5.993748 TTTTAGGGCTTTTTACCAGATGG 57.006 39.130 0.00 0.00 42.17 3.51
281 282 2.532250 AGGGCTTTTTACCAGATGGG 57.468 50.000 3.48 0.00 44.81 4.00
282 283 0.824109 GGGCTTTTTACCAGATGGGC 59.176 55.000 3.48 0.00 42.05 5.36
283 284 0.824109 GGCTTTTTACCAGATGGGCC 59.176 55.000 3.48 0.00 42.05 5.80
284 285 0.455815 GCTTTTTACCAGATGGGCCG 59.544 55.000 3.48 0.00 42.05 6.13
285 286 1.102978 CTTTTTACCAGATGGGCCGG 58.897 55.000 0.00 0.00 42.05 6.13
286 287 0.323908 TTTTTACCAGATGGGCCGGG 60.324 55.000 2.18 0.00 42.05 5.73
287 288 2.847366 TTTTACCAGATGGGCCGGGC 62.847 60.000 22.00 22.00 42.05 6.13
288 289 4.815973 TACCAGATGGGCCGGGCT 62.816 66.667 28.80 9.11 42.05 5.19
299 300 2.600173 CCGGGCTTGGGCTTGAAA 60.600 61.111 0.00 0.00 38.73 2.69
300 301 2.206536 CCGGGCTTGGGCTTGAAAA 61.207 57.895 0.00 0.00 38.73 2.29
301 302 1.543944 CCGGGCTTGGGCTTGAAAAT 61.544 55.000 0.00 0.00 38.73 1.82
302 303 0.321346 CGGGCTTGGGCTTGAAAATT 59.679 50.000 0.00 0.00 38.73 1.82
303 304 1.548269 CGGGCTTGGGCTTGAAAATTA 59.452 47.619 0.00 0.00 38.73 1.40
304 305 2.417243 CGGGCTTGGGCTTGAAAATTAG 60.417 50.000 0.00 0.00 38.73 1.73
305 306 2.093500 GGGCTTGGGCTTGAAAATTAGG 60.093 50.000 0.00 0.00 38.73 2.69
306 307 2.621338 GCTTGGGCTTGAAAATTAGGC 58.379 47.619 0.00 0.00 36.31 3.93
310 311 2.967599 GGCTTGAAAATTAGGCCCAG 57.032 50.000 0.00 0.00 37.12 4.45
311 312 2.179427 GGCTTGAAAATTAGGCCCAGT 58.821 47.619 0.00 0.00 37.12 4.00
312 313 2.094026 GGCTTGAAAATTAGGCCCAGTG 60.094 50.000 0.00 0.00 37.12 3.66
313 314 2.825532 GCTTGAAAATTAGGCCCAGTGA 59.174 45.455 0.00 0.00 0.00 3.41
314 315 3.448660 GCTTGAAAATTAGGCCCAGTGAT 59.551 43.478 0.00 0.00 0.00 3.06
315 316 4.644685 GCTTGAAAATTAGGCCCAGTGATA 59.355 41.667 0.00 0.00 0.00 2.15
316 317 5.221126 GCTTGAAAATTAGGCCCAGTGATAG 60.221 44.000 0.00 0.00 0.00 2.08
317 318 4.792068 TGAAAATTAGGCCCAGTGATAGG 58.208 43.478 0.00 0.00 0.00 2.57
318 319 2.959465 AATTAGGCCCAGTGATAGGC 57.041 50.000 0.00 0.51 0.00 3.93
319 320 1.068121 ATTAGGCCCAGTGATAGGCC 58.932 55.000 17.67 17.67 46.73 5.19
321 322 2.512896 GGCCCAGTGATAGGCCTG 59.487 66.667 17.99 0.00 43.43 4.85
322 323 2.512896 GCCCAGTGATAGGCCTGG 59.487 66.667 17.99 7.62 46.43 4.45
324 325 4.399764 CCAGTGATAGGCCTGGGA 57.600 61.111 17.99 0.00 43.74 4.37
325 326 2.140405 CCAGTGATAGGCCTGGGAG 58.860 63.158 17.99 0.00 43.74 4.30
326 327 1.414061 CCAGTGATAGGCCTGGGAGG 61.414 65.000 17.99 5.93 43.74 4.30
327 328 1.074167 AGTGATAGGCCTGGGAGGG 60.074 63.158 17.99 0.00 35.37 4.30
344 345 3.686760 GCCTGGGCCTCAGTTTTC 58.313 61.111 16.96 3.57 41.83 2.29
345 346 1.075659 GCCTGGGCCTCAGTTTTCT 59.924 57.895 16.96 0.00 41.83 2.52
346 347 1.246737 GCCTGGGCCTCAGTTTTCTG 61.247 60.000 16.96 5.05 41.83 3.02
347 348 1.246737 CCTGGGCCTCAGTTTTCTGC 61.247 60.000 16.96 0.00 46.59 4.26
348 349 1.228552 TGGGCCTCAGTTTTCTGCC 60.229 57.895 4.53 0.00 46.59 4.85
349 350 2.335712 GGGCCTCAGTTTTCTGCCG 61.336 63.158 0.84 0.00 46.59 5.69
350 351 1.600916 GGCCTCAGTTTTCTGCCGT 60.601 57.895 0.00 0.00 46.59 5.68
351 352 1.576421 GCCTCAGTTTTCTGCCGTG 59.424 57.895 0.00 0.00 46.59 4.94
352 353 1.856265 GCCTCAGTTTTCTGCCGTGG 61.856 60.000 0.00 0.00 46.59 4.94
353 354 1.237285 CCTCAGTTTTCTGCCGTGGG 61.237 60.000 0.00 0.00 46.59 4.61
363 364 2.650778 GCCGTGGGCTTTTTCAGG 59.349 61.111 0.00 0.00 46.69 3.86
364 365 3.573772 GCCGTGGGCTTTTTCAGGC 62.574 63.158 0.00 0.00 46.69 4.85
369 370 4.069232 GGCTTTTTCAGGCCCGGC 62.069 66.667 0.00 0.00 42.55 6.13
408 409 2.887151 GCCCATGGCCAGATATAAGT 57.113 50.000 13.05 0.00 44.06 2.24
409 410 2.440409 GCCCATGGCCAGATATAAGTG 58.560 52.381 13.05 0.88 44.06 3.16
410 411 2.881403 GCCCATGGCCAGATATAAGTGG 60.881 54.545 13.05 11.41 44.06 4.00
411 412 2.291153 CCCATGGCCAGATATAAGTGGG 60.291 54.545 19.79 19.79 39.10 4.61
412 413 2.644299 CCATGGCCAGATATAAGTGGGA 59.356 50.000 13.05 0.00 34.06 4.37
430 431 2.359975 CCACCGGAAACAGCTCCC 60.360 66.667 9.46 0.00 31.03 4.30
431 432 2.429930 CACCGGAAACAGCTCCCA 59.570 61.111 9.46 0.00 31.03 4.37
432 433 1.672356 CACCGGAAACAGCTCCCAG 60.672 63.158 9.46 0.00 31.03 4.45
433 434 1.841556 ACCGGAAACAGCTCCCAGA 60.842 57.895 9.46 0.00 31.03 3.86
434 435 1.201429 ACCGGAAACAGCTCCCAGAT 61.201 55.000 9.46 0.00 31.03 2.90
435 436 0.745845 CCGGAAACAGCTCCCAGATG 60.746 60.000 0.00 0.00 37.69 2.90
438 439 1.363744 GAAACAGCTCCCAGATGTCG 58.636 55.000 0.00 0.00 45.10 4.35
439 440 0.687354 AAACAGCTCCCAGATGTCGT 59.313 50.000 0.00 0.00 45.10 4.34
441 442 1.226802 CAGCTCCCAGATGTCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
443 444 2.808315 CTCCCAGATGTCGTCGGG 59.192 66.667 13.03 13.03 41.36 5.14
444 445 3.432051 CTCCCAGATGTCGTCGGGC 62.432 68.421 13.95 0.00 40.47 6.13
445 446 3.461773 CCCAGATGTCGTCGGGCT 61.462 66.667 5.75 0.00 40.47 5.19
447 448 2.887568 CAGATGTCGTCGGGCTGC 60.888 66.667 0.00 0.00 0.00 5.25
448 449 3.071206 AGATGTCGTCGGGCTGCT 61.071 61.111 0.00 0.00 0.00 4.24
449 450 1.753078 AGATGTCGTCGGGCTGCTA 60.753 57.895 0.00 0.00 0.00 3.49
450 451 1.299468 GATGTCGTCGGGCTGCTAG 60.299 63.158 0.00 0.00 0.00 3.42
458 459 1.607148 GTCGGGCTGCTAGTTTTTGTT 59.393 47.619 0.00 0.00 0.00 2.83
459 460 1.877443 TCGGGCTGCTAGTTTTTGTTC 59.123 47.619 0.00 0.00 0.00 3.18
470 471 1.028905 TTTTTGTTCTCGTGGGCCAG 58.971 50.000 6.40 0.73 0.00 4.85
477 478 1.450312 CTCGTGGGCCAGTTCCATC 60.450 63.158 6.40 0.00 36.58 3.51
514 538 4.082523 TCTTGGGCCCGCTTCTCG 62.083 66.667 19.37 0.00 38.08 4.04
573 613 1.871039 GAAGAGAGAGACCCGATCGAG 59.129 57.143 18.66 5.68 0.00 4.04
625 666 3.866582 CCCTCCATCACCTCGCCC 61.867 72.222 0.00 0.00 0.00 6.13
645 686 1.801771 CACGCGTTCATTCCTTTACCA 59.198 47.619 10.22 0.00 0.00 3.25
691 732 2.510012 CATCGCTCTCGGCAGCAA 60.510 61.111 7.22 0.00 39.62 3.91
806 850 0.511653 GCGTCGTCTCTTTGGTTTCC 59.488 55.000 0.00 0.00 0.00 3.13
808 852 1.792949 CGTCGTCTCTTTGGTTTCCTG 59.207 52.381 0.00 0.00 0.00 3.86
810 854 2.801111 GTCGTCTCTTTGGTTTCCTGAC 59.199 50.000 0.00 0.00 0.00 3.51
964 1008 2.490217 CGCACGACTCGGAAGGAT 59.510 61.111 2.98 0.00 0.00 3.24
973 1017 4.215742 CGGAAGGATACGGGCGCA 62.216 66.667 10.83 0.00 46.39 6.09
1033 1077 2.258591 CTCCGGATACATCGGCGG 59.741 66.667 3.57 0.00 46.43 6.13
1071 1115 2.522923 AATTTGGCGGCACCCACA 60.523 55.556 12.92 0.00 37.83 4.17
1164 1208 4.803426 GCGGCGTCTGAGGTGAGG 62.803 72.222 9.37 0.00 0.00 3.86
1261 1308 0.036732 AGTGGAGAATTTGCCTGCGA 59.963 50.000 0.00 0.00 0.00 5.10
1418 1471 5.105752 CCTCTTATCAGACAAGGTTCTTCG 58.894 45.833 0.00 0.00 0.00 3.79
1419 1472 5.336849 CCTCTTATCAGACAAGGTTCTTCGT 60.337 44.000 0.00 0.00 0.00 3.85
1423 1476 0.685660 AGACAAGGTTCTTCGTCCCC 59.314 55.000 0.00 0.00 0.00 4.81
1446 1499 2.366916 CCATCCCAGCCTTCTACTACTG 59.633 54.545 0.00 0.00 0.00 2.74
1457 1516 7.439056 CAGCCTTCTACTACTGTACTAGTACTC 59.561 44.444 28.56 8.80 40.89 2.59
1460 1519 9.142014 CCTTCTACTACTGTACTAGTACTCCTA 57.858 40.741 28.56 15.88 40.89 2.94
1461 1520 9.965824 CTTCTACTACTGTACTAGTACTCCTAC 57.034 40.741 28.56 9.15 40.89 3.18
1462 1521 9.707957 TTCTACTACTGTACTAGTACTCCTACT 57.292 37.037 28.56 12.61 40.89 2.57
1477 1536 9.357161 AGTACTCCTACTATTCTACAGATTTGG 57.643 37.037 0.00 0.00 30.81 3.28
1478 1537 9.134055 GTACTCCTACTATTCTACAGATTTGGT 57.866 37.037 0.00 0.00 0.00 3.67
1481 1540 8.375493 TCCTACTATTCTACAGATTTGGTTGT 57.625 34.615 0.00 0.00 0.00 3.32
1620 1696 3.395639 AGCACATGCCATTTCTGTTTTG 58.604 40.909 0.00 0.00 43.38 2.44
1725 1801 3.777106 TGTTGGAGTCTTTGATCTGCT 57.223 42.857 0.00 0.00 0.00 4.24
1745 1821 3.772932 CTTTTACGGCATGATGTTGCAT 58.227 40.909 0.00 0.00 44.59 3.96
1757 1833 1.533625 TGTTGCATTGTAGGTGCTCC 58.466 50.000 0.00 0.00 42.92 4.70
2050 2141 2.409948 AGTGTGCCCTGAATTCTAGC 57.590 50.000 7.05 7.41 0.00 3.42
2061 2153 4.197750 CTGAATTCTAGCCTGCATCTGTT 58.802 43.478 7.05 0.00 0.00 3.16
2070 2162 1.202222 CCTGCATCTGTTTCCGAATGC 60.202 52.381 0.00 0.00 35.77 3.56
2074 2166 2.855963 GCATCTGTTTCCGAATGCATTG 59.144 45.455 18.59 9.14 35.35 2.82
2110 2202 2.054232 AGAAATGGCCTCAGCAGATG 57.946 50.000 3.32 0.00 42.56 2.90
2131 2223 1.747709 CTCTGATCAAACTGGCTGGG 58.252 55.000 0.00 0.00 0.00 4.45
2191 2283 2.809861 TACGACTCTCGCCGTTCCCT 62.810 60.000 0.00 0.00 45.12 4.20
2201 2293 0.663153 GCCGTTCCCTTATGTGATGC 59.337 55.000 0.00 0.00 0.00 3.91
2219 2311 1.535028 TGCTCAACTATGTTGCAACCG 59.465 47.619 26.14 16.41 35.46 4.44
2324 2416 8.034215 GGTATGATTCAGAGTTCAGATATCCAG 58.966 40.741 0.00 0.00 0.00 3.86
2333 2425 6.100279 AGAGTTCAGATATCCAGCACCATAAA 59.900 38.462 0.00 0.00 0.00 1.40
2337 2429 6.950842 TCAGATATCCAGCACCATAAATAGG 58.049 40.000 0.00 0.00 0.00 2.57
2343 2516 4.021104 TCCAGCACCATAAATAGGAGATCG 60.021 45.833 0.00 0.00 0.00 3.69
2344 2517 4.248859 CAGCACCATAAATAGGAGATCGG 58.751 47.826 0.00 0.00 0.00 4.18
2366 2539 5.652324 GGATACTCCCTCCTAACCAAGATA 58.348 45.833 0.00 0.00 0.00 1.98
2373 2546 7.036863 ACTCCCTCCTAACCAAGATAATTTTGA 60.037 37.037 0.00 0.00 0.00 2.69
2582 2775 4.436998 GTCGTCCCTGCTGTCCCG 62.437 72.222 0.00 0.00 0.00 5.14
2627 2823 0.250467 GAAGTTCCAGCTCTGTGCCA 60.250 55.000 0.00 0.00 44.23 4.92
2674 2918 3.429410 GGCATGCAGTGGATTCTTTAACC 60.429 47.826 21.36 0.00 0.00 2.85
2690 2934 1.813513 AACCGGATGAAGAACTGCAG 58.186 50.000 13.48 13.48 0.00 4.41
2739 2983 1.467734 CAGAATGTTCTGCACTCTGCC 59.532 52.381 9.59 0.00 43.22 4.85
2762 3006 0.102300 GCACTTGTGTTGGTTGGGTC 59.898 55.000 2.61 0.00 0.00 4.46
2828 3072 5.389520 TGGAACAATGTGGATTTACCTGAA 58.610 37.500 0.00 0.00 35.49 3.02
2832 3076 3.992943 ATGTGGATTTACCTGAACGGA 57.007 42.857 0.00 0.00 39.86 4.69
2852 3096 7.227049 ACGGATTTATTCAGTTGGAAAACAT 57.773 32.000 0.00 0.00 39.39 2.71
2861 3105 6.627395 TCAGTTGGAAAACATACACGAATT 57.373 33.333 0.00 0.00 0.00 2.17
2876 3120 3.730715 CACGAATTGCAGAAGGAAAACAC 59.269 43.478 0.00 0.00 0.00 3.32
2914 3160 1.805945 CTGGTGTCGCGGTAGCTTC 60.806 63.158 6.13 0.00 42.32 3.86
3019 3270 5.705441 GGATTGGTGTAGAGATTGTTTGTGA 59.295 40.000 0.00 0.00 0.00 3.58
3022 3273 5.297547 TGGTGTAGAGATTGTTTGTGACTC 58.702 41.667 0.00 0.00 0.00 3.36
3027 3278 3.817647 AGAGATTGTTTGTGACTCTTGCC 59.182 43.478 0.00 0.00 34.85 4.52
3029 3280 4.210331 AGATTGTTTGTGACTCTTGCCTT 58.790 39.130 0.00 0.00 0.00 4.35
3040 3291 4.098044 TGACTCTTGCCTTTCTAGTATCCG 59.902 45.833 0.00 0.00 0.00 4.18
3046 3297 3.224269 GCCTTTCTAGTATCCGTCCTCT 58.776 50.000 0.00 0.00 0.00 3.69
3048 3299 4.826183 GCCTTTCTAGTATCCGTCCTCTTA 59.174 45.833 0.00 0.00 0.00 2.10
3055 3306 7.114754 TCTAGTATCCGTCCTCTTACTTTGAA 58.885 38.462 0.00 0.00 0.00 2.69
3056 3307 6.793505 AGTATCCGTCCTCTTACTTTGAAT 57.206 37.500 0.00 0.00 0.00 2.57
3057 3308 6.807789 AGTATCCGTCCTCTTACTTTGAATC 58.192 40.000 0.00 0.00 0.00 2.52
3058 3309 5.677319 ATCCGTCCTCTTACTTTGAATCA 57.323 39.130 0.00 0.00 0.00 2.57
3059 3310 5.073311 TCCGTCCTCTTACTTTGAATCAG 57.927 43.478 0.00 0.00 0.00 2.90
3060 3311 4.527038 TCCGTCCTCTTACTTTGAATCAGT 59.473 41.667 0.00 0.00 0.00 3.41
3061 3312 5.011738 TCCGTCCTCTTACTTTGAATCAGTT 59.988 40.000 0.00 0.00 0.00 3.16
3062 3313 5.348997 CCGTCCTCTTACTTTGAATCAGTTC 59.651 44.000 0.00 0.00 34.85 3.01
3063 3314 5.348997 CGTCCTCTTACTTTGAATCAGTTCC 59.651 44.000 0.00 0.00 33.26 3.62
3064 3315 6.468543 GTCCTCTTACTTTGAATCAGTTCCT 58.531 40.000 0.00 0.00 33.26 3.36
3065 3316 6.937465 GTCCTCTTACTTTGAATCAGTTCCTT 59.063 38.462 0.00 0.00 33.26 3.36
3066 3317 8.095169 GTCCTCTTACTTTGAATCAGTTCCTTA 58.905 37.037 0.00 0.00 33.26 2.69
3067 3318 8.095169 TCCTCTTACTTTGAATCAGTTCCTTAC 58.905 37.037 0.00 0.00 33.26 2.34
3068 3319 7.878127 CCTCTTACTTTGAATCAGTTCCTTACA 59.122 37.037 0.00 0.00 33.26 2.41
3069 3320 8.833231 TCTTACTTTGAATCAGTTCCTTACAG 57.167 34.615 0.00 0.00 33.26 2.74
3070 3321 8.647796 TCTTACTTTGAATCAGTTCCTTACAGA 58.352 33.333 0.00 0.00 33.26 3.41
3071 3322 8.603242 TTACTTTGAATCAGTTCCTTACAGAC 57.397 34.615 0.00 0.00 33.26 3.51
3072 3323 6.831976 ACTTTGAATCAGTTCCTTACAGACT 58.168 36.000 0.00 0.00 33.26 3.24
3073 3324 6.931840 ACTTTGAATCAGTTCCTTACAGACTC 59.068 38.462 0.00 0.00 33.26 3.36
3074 3325 5.407407 TGAATCAGTTCCTTACAGACTCC 57.593 43.478 0.00 0.00 33.26 3.85
3075 3326 4.838423 TGAATCAGTTCCTTACAGACTCCA 59.162 41.667 0.00 0.00 33.26 3.86
3076 3327 5.047021 TGAATCAGTTCCTTACAGACTCCAG 60.047 44.000 0.00 0.00 33.26 3.86
3077 3328 4.114015 TCAGTTCCTTACAGACTCCAGA 57.886 45.455 0.00 0.00 0.00 3.86
3078 3329 4.082845 TCAGTTCCTTACAGACTCCAGAG 58.917 47.826 0.00 0.00 0.00 3.35
3079 3330 3.829601 CAGTTCCTTACAGACTCCAGAGT 59.170 47.826 0.00 0.00 45.84 3.24
3080 3331 4.282195 CAGTTCCTTACAGACTCCAGAGTT 59.718 45.833 1.08 0.00 42.66 3.01
3081 3332 4.902448 AGTTCCTTACAGACTCCAGAGTTT 59.098 41.667 1.08 0.00 42.66 2.66
3082 3333 4.873746 TCCTTACAGACTCCAGAGTTTG 57.126 45.455 14.83 14.83 45.72 2.93
3088 3339 3.397482 CAGACTCCAGAGTTTGTTCAGG 58.603 50.000 9.57 0.00 42.66 3.86
3089 3340 2.370189 AGACTCCAGAGTTTGTTCAGGG 59.630 50.000 1.08 0.00 42.66 4.45
3090 3341 2.104963 GACTCCAGAGTTTGTTCAGGGT 59.895 50.000 1.08 0.00 42.66 4.34
3091 3342 2.509964 ACTCCAGAGTTTGTTCAGGGTT 59.490 45.455 0.00 0.00 38.83 4.11
3092 3343 3.053619 ACTCCAGAGTTTGTTCAGGGTTT 60.054 43.478 0.00 0.00 38.83 3.27
3093 3344 3.551846 TCCAGAGTTTGTTCAGGGTTTC 58.448 45.455 0.00 0.00 0.00 2.78
3094 3345 3.053991 TCCAGAGTTTGTTCAGGGTTTCA 60.054 43.478 0.00 0.00 0.00 2.69
3095 3346 3.316308 CCAGAGTTTGTTCAGGGTTTCAG 59.684 47.826 0.00 0.00 0.00 3.02
3096 3347 3.316308 CAGAGTTTGTTCAGGGTTTCAGG 59.684 47.826 0.00 0.00 0.00 3.86
3097 3348 2.031870 AGTTTGTTCAGGGTTTCAGGC 58.968 47.619 0.00 0.00 0.00 4.85
3098 3349 1.028905 TTTGTTCAGGGTTTCAGGCG 58.971 50.000 0.00 0.00 0.00 5.52
3099 3350 1.452145 TTGTTCAGGGTTTCAGGCGC 61.452 55.000 0.00 0.00 0.00 6.53
3100 3351 2.668212 TTCAGGGTTTCAGGCGCG 60.668 61.111 0.00 0.00 0.00 6.86
3103 3354 4.722700 AGGGTTTCAGGCGCGCAT 62.723 61.111 34.42 26.01 0.00 4.73
3104 3355 3.747976 GGGTTTCAGGCGCGCATT 61.748 61.111 34.42 18.08 0.00 3.56
3105 3356 2.403378 GGGTTTCAGGCGCGCATTA 61.403 57.895 34.42 16.00 0.00 1.90
3106 3357 1.226295 GGTTTCAGGCGCGCATTAC 60.226 57.895 34.42 21.86 0.00 1.89
3118 3369 2.892373 CGCATTACGCTTCTTCCAAA 57.108 45.000 0.00 0.00 39.08 3.28
3119 3370 3.405170 CGCATTACGCTTCTTCCAAAT 57.595 42.857 0.00 0.00 39.08 2.32
3120 3371 3.758300 CGCATTACGCTTCTTCCAAATT 58.242 40.909 0.00 0.00 39.08 1.82
3121 3372 4.165779 CGCATTACGCTTCTTCCAAATTT 58.834 39.130 0.00 0.00 39.08 1.82
3122 3373 4.030529 CGCATTACGCTTCTTCCAAATTTG 59.969 41.667 11.40 11.40 39.08 2.32
3123 3374 4.923281 GCATTACGCTTCTTCCAAATTTGT 59.077 37.500 16.73 0.00 37.77 2.83
3124 3375 5.164061 GCATTACGCTTCTTCCAAATTTGTG 60.164 40.000 16.73 8.58 37.77 3.33
3125 3376 5.508200 TTACGCTTCTTCCAAATTTGTGT 57.492 34.783 16.73 5.77 0.00 3.72
3126 3377 3.964909 ACGCTTCTTCCAAATTTGTGTC 58.035 40.909 16.73 0.00 0.00 3.67
3127 3378 3.243401 ACGCTTCTTCCAAATTTGTGTCC 60.243 43.478 16.73 0.00 0.00 4.02
3128 3379 3.004734 CGCTTCTTCCAAATTTGTGTCCT 59.995 43.478 16.73 0.00 0.00 3.85
3129 3380 4.301628 GCTTCTTCCAAATTTGTGTCCTG 58.698 43.478 16.73 0.81 0.00 3.86
3130 3381 4.301628 CTTCTTCCAAATTTGTGTCCTGC 58.698 43.478 16.73 0.00 0.00 4.85
3131 3382 3.565307 TCTTCCAAATTTGTGTCCTGCT 58.435 40.909 16.73 0.00 0.00 4.24
3132 3383 4.724399 TCTTCCAAATTTGTGTCCTGCTA 58.276 39.130 16.73 0.00 0.00 3.49
3133 3384 5.324409 TCTTCCAAATTTGTGTCCTGCTAT 58.676 37.500 16.73 0.00 0.00 2.97
3134 3385 5.415701 TCTTCCAAATTTGTGTCCTGCTATC 59.584 40.000 16.73 0.00 0.00 2.08
3135 3386 4.661222 TCCAAATTTGTGTCCTGCTATCA 58.339 39.130 16.73 0.00 0.00 2.15
3136 3387 4.701651 TCCAAATTTGTGTCCTGCTATCAG 59.298 41.667 16.73 0.00 40.02 2.90
3147 3398 3.482156 CTGCTATCAGGTAACCATGCT 57.518 47.619 0.00 0.00 36.68 3.79
3148 3399 3.136763 CTGCTATCAGGTAACCATGCTG 58.863 50.000 0.00 0.00 36.68 4.41
3149 3400 2.771372 TGCTATCAGGTAACCATGCTGA 59.229 45.455 2.95 2.95 37.17 4.26
3150 3401 3.199727 TGCTATCAGGTAACCATGCTGAA 59.800 43.478 4.40 0.00 37.17 3.02
3151 3402 3.561725 GCTATCAGGTAACCATGCTGAAC 59.438 47.826 4.40 0.00 37.17 3.18
3152 3403 4.684485 GCTATCAGGTAACCATGCTGAACT 60.684 45.833 4.40 0.00 37.17 3.01
3153 3404 3.057969 TCAGGTAACCATGCTGAACTG 57.942 47.619 0.00 0.00 37.17 3.16
3154 3405 2.371841 TCAGGTAACCATGCTGAACTGT 59.628 45.455 0.00 0.00 37.17 3.55
3155 3406 3.149196 CAGGTAACCATGCTGAACTGTT 58.851 45.455 0.00 0.00 37.17 3.16
3156 3407 3.058016 CAGGTAACCATGCTGAACTGTTG 60.058 47.826 0.00 0.00 37.17 3.33
3157 3408 2.228822 GGTAACCATGCTGAACTGTTGG 59.771 50.000 0.00 0.00 0.00 3.77
3158 3409 2.363306 AACCATGCTGAACTGTTGGA 57.637 45.000 0.00 0.00 0.00 3.53
3159 3410 1.901591 ACCATGCTGAACTGTTGGAG 58.098 50.000 0.00 0.00 0.00 3.86
3160 3411 1.143684 ACCATGCTGAACTGTTGGAGT 59.856 47.619 0.00 0.00 35.94 3.85
3161 3412 1.538512 CCATGCTGAACTGTTGGAGTG 59.461 52.381 0.00 0.00 34.02 3.51
3162 3413 2.224606 CATGCTGAACTGTTGGAGTGT 58.775 47.619 0.00 0.00 34.02 3.55
3163 3414 2.418368 TGCTGAACTGTTGGAGTGTT 57.582 45.000 0.00 0.00 34.02 3.32
3164 3415 2.016318 TGCTGAACTGTTGGAGTGTTG 58.984 47.619 0.00 0.00 34.02 3.33
3165 3416 1.334869 GCTGAACTGTTGGAGTGTTGG 59.665 52.381 0.00 0.00 34.02 3.77
3166 3417 2.643551 CTGAACTGTTGGAGTGTTGGT 58.356 47.619 0.00 0.00 34.02 3.67
3167 3418 2.355756 CTGAACTGTTGGAGTGTTGGTG 59.644 50.000 0.00 0.00 34.02 4.17
3168 3419 1.065551 GAACTGTTGGAGTGTTGGTGC 59.934 52.381 0.00 0.00 34.02 5.01
3169 3420 0.034574 ACTGTTGGAGTGTTGGTGCA 60.035 50.000 0.00 0.00 31.75 4.57
3170 3421 0.381801 CTGTTGGAGTGTTGGTGCAC 59.618 55.000 8.80 8.80 39.51 4.57
3171 3422 1.355210 GTTGGAGTGTTGGTGCACG 59.645 57.895 11.45 0.00 43.61 5.34
3172 3423 1.078072 TTGGAGTGTTGGTGCACGT 60.078 52.632 11.45 0.00 43.61 4.49
3173 3424 1.092921 TTGGAGTGTTGGTGCACGTC 61.093 55.000 11.45 4.22 43.61 4.34
3174 3425 1.227556 GGAGTGTTGGTGCACGTCT 60.228 57.895 11.45 4.27 43.61 4.18
3175 3426 0.032952 GGAGTGTTGGTGCACGTCTA 59.967 55.000 11.45 0.00 43.61 2.59
3176 3427 1.419374 GAGTGTTGGTGCACGTCTAG 58.581 55.000 11.45 0.00 43.61 2.43
3177 3428 0.750850 AGTGTTGGTGCACGTCTAGT 59.249 50.000 11.45 0.00 43.61 2.57
3178 3429 1.138266 AGTGTTGGTGCACGTCTAGTT 59.862 47.619 11.45 0.00 43.61 2.24
3179 3430 1.260561 GTGTTGGTGCACGTCTAGTTG 59.739 52.381 11.45 0.00 0.00 3.16
3180 3431 1.134640 TGTTGGTGCACGTCTAGTTGT 60.135 47.619 11.45 0.00 0.00 3.32
3181 3432 1.937899 GTTGGTGCACGTCTAGTTGTT 59.062 47.619 11.45 0.00 0.00 2.83
3182 3433 2.319136 TGGTGCACGTCTAGTTGTTT 57.681 45.000 11.45 0.00 0.00 2.83
3183 3434 2.206750 TGGTGCACGTCTAGTTGTTTC 58.793 47.619 11.45 0.00 0.00 2.78
3184 3435 2.206750 GGTGCACGTCTAGTTGTTTCA 58.793 47.619 11.45 0.00 0.00 2.69
3185 3436 2.033151 GGTGCACGTCTAGTTGTTTCAC 60.033 50.000 11.45 1.20 0.00 3.18
3186 3437 2.033151 GTGCACGTCTAGTTGTTTCACC 60.033 50.000 0.00 0.00 0.00 4.02
3187 3438 2.206750 GCACGTCTAGTTGTTTCACCA 58.793 47.619 0.00 0.00 0.00 4.17
3188 3439 2.221055 GCACGTCTAGTTGTTTCACCAG 59.779 50.000 0.00 0.00 0.00 4.00
3189 3440 2.221055 CACGTCTAGTTGTTTCACCAGC 59.779 50.000 0.00 0.00 0.00 4.85
3190 3441 1.798813 CGTCTAGTTGTTTCACCAGCC 59.201 52.381 0.00 0.00 0.00 4.85
3191 3442 2.152016 GTCTAGTTGTTTCACCAGCCC 58.848 52.381 0.00 0.00 0.00 5.19
3192 3443 2.054799 TCTAGTTGTTTCACCAGCCCT 58.945 47.619 0.00 0.00 0.00 5.19
3193 3444 2.441750 TCTAGTTGTTTCACCAGCCCTT 59.558 45.455 0.00 0.00 0.00 3.95
3194 3445 2.159179 AGTTGTTTCACCAGCCCTTT 57.841 45.000 0.00 0.00 0.00 3.11
3195 3446 2.031870 AGTTGTTTCACCAGCCCTTTC 58.968 47.619 0.00 0.00 0.00 2.62
3196 3447 1.068588 GTTGTTTCACCAGCCCTTTCC 59.931 52.381 0.00 0.00 0.00 3.13
3197 3448 0.469144 TGTTTCACCAGCCCTTTCCC 60.469 55.000 0.00 0.00 0.00 3.97
3198 3449 1.155155 TTTCACCAGCCCTTTCCCC 59.845 57.895 0.00 0.00 0.00 4.81
3199 3450 2.380571 TTTCACCAGCCCTTTCCCCC 62.381 60.000 0.00 0.00 0.00 5.40
3200 3451 3.268032 CACCAGCCCTTTCCCCCT 61.268 66.667 0.00 0.00 0.00 4.79
3201 3452 3.268032 ACCAGCCCTTTCCCCCTG 61.268 66.667 0.00 0.00 0.00 4.45
3202 3453 4.066139 CCAGCCCTTTCCCCCTGG 62.066 72.222 0.00 0.00 38.93 4.45
3203 3454 2.941025 CAGCCCTTTCCCCCTGGA 60.941 66.667 0.00 0.00 39.54 3.86
3222 3473 6.006759 CTGGAAGGAGATTGAAACTGAAAC 57.993 41.667 0.00 0.00 0.00 2.78
3223 3474 5.694995 TGGAAGGAGATTGAAACTGAAACT 58.305 37.500 0.00 0.00 0.00 2.66
3224 3475 5.532406 TGGAAGGAGATTGAAACTGAAACTG 59.468 40.000 0.00 0.00 0.00 3.16
3225 3476 5.444663 AAGGAGATTGAAACTGAAACTGC 57.555 39.130 0.00 0.00 0.00 4.40
3226 3477 4.464008 AGGAGATTGAAACTGAAACTGCA 58.536 39.130 0.00 0.00 0.00 4.41
3227 3478 5.075493 AGGAGATTGAAACTGAAACTGCAT 58.925 37.500 0.00 0.00 0.00 3.96
3228 3479 5.048224 AGGAGATTGAAACTGAAACTGCATG 60.048 40.000 0.00 0.00 0.00 4.06
3229 3480 5.278660 GGAGATTGAAACTGAAACTGCATGT 60.279 40.000 0.00 0.00 0.00 3.21
3230 3481 6.152932 AGATTGAAACTGAAACTGCATGTT 57.847 33.333 0.00 0.00 41.29 2.71
3244 3495 2.872370 GCATGTTTGCTAGCTGAAAGG 58.128 47.619 17.23 2.40 45.77 3.11
3245 3496 2.872370 CATGTTTGCTAGCTGAAAGGC 58.128 47.619 17.23 0.00 0.00 4.35
3246 3497 2.276732 TGTTTGCTAGCTGAAAGGCT 57.723 45.000 17.23 0.00 45.29 4.58
3247 3498 1.881973 TGTTTGCTAGCTGAAAGGCTG 59.118 47.619 17.23 0.00 43.01 4.85
3248 3499 2.154462 GTTTGCTAGCTGAAAGGCTGA 58.846 47.619 17.23 0.00 43.01 4.26
3249 3500 2.554032 GTTTGCTAGCTGAAAGGCTGAA 59.446 45.455 17.23 0.00 43.01 3.02
3250 3501 2.566833 TGCTAGCTGAAAGGCTGAAA 57.433 45.000 17.23 0.00 43.01 2.69
3251 3502 2.154462 TGCTAGCTGAAAGGCTGAAAC 58.846 47.619 17.23 0.00 43.01 2.78
3252 3503 2.224621 TGCTAGCTGAAAGGCTGAAACT 60.225 45.455 17.23 0.00 43.01 2.66
3253 3504 2.161211 GCTAGCTGAAAGGCTGAAACTG 59.839 50.000 7.70 0.00 43.01 3.16
3254 3505 2.645838 AGCTGAAAGGCTGAAACTGA 57.354 45.000 0.00 0.00 41.43 3.41
3255 3506 2.225467 AGCTGAAAGGCTGAAACTGAC 58.775 47.619 0.00 0.00 41.43 3.51
3256 3507 1.949525 GCTGAAAGGCTGAAACTGACA 59.050 47.619 0.00 0.00 0.00 3.58
3257 3508 2.031333 GCTGAAAGGCTGAAACTGACAG 60.031 50.000 0.00 0.00 38.27 3.51
3258 3509 2.551459 CTGAAAGGCTGAAACTGACAGG 59.449 50.000 7.51 0.00 36.09 4.00
3263 3514 2.342910 GCTGAAACTGACAGGCATTG 57.657 50.000 7.51 0.00 36.09 2.82
3264 3515 1.068055 GCTGAAACTGACAGGCATTGG 60.068 52.381 7.51 0.00 36.09 3.16
3265 3516 0.961019 TGAAACTGACAGGCATTGGC 59.039 50.000 7.51 1.17 40.13 4.52
3266 3517 1.251251 GAAACTGACAGGCATTGGCT 58.749 50.000 6.96 6.96 40.87 4.75
3267 3518 1.615392 GAAACTGACAGGCATTGGCTT 59.385 47.619 10.47 2.44 40.87 4.35
3268 3519 1.708341 AACTGACAGGCATTGGCTTT 58.292 45.000 10.47 3.98 40.87 3.51
3269 3520 0.963962 ACTGACAGGCATTGGCTTTG 59.036 50.000 10.47 3.95 40.87 2.77
3270 3521 1.250328 CTGACAGGCATTGGCTTTGA 58.750 50.000 10.47 0.00 40.87 2.69
3271 3522 1.614903 CTGACAGGCATTGGCTTTGAA 59.385 47.619 10.47 0.00 40.87 2.69
3272 3523 1.340889 TGACAGGCATTGGCTTTGAAC 59.659 47.619 10.47 1.65 40.87 3.18
3273 3524 1.340889 GACAGGCATTGGCTTTGAACA 59.659 47.619 10.47 0.00 40.87 3.18
3274 3525 1.972795 ACAGGCATTGGCTTTGAACAT 59.027 42.857 10.47 0.00 40.87 2.71
3275 3526 2.028748 ACAGGCATTGGCTTTGAACATC 60.029 45.455 10.47 0.00 40.87 3.06
3276 3527 1.551883 AGGCATTGGCTTTGAACATCC 59.448 47.619 6.96 0.00 40.87 3.51
3277 3528 1.275856 GGCATTGGCTTTGAACATCCA 59.724 47.619 2.42 0.00 40.87 3.41
3278 3529 2.340337 GCATTGGCTTTGAACATCCAC 58.660 47.619 0.00 0.00 36.96 4.02
3279 3530 2.598589 CATTGGCTTTGAACATCCACG 58.401 47.619 0.00 0.00 0.00 4.94
3280 3531 1.974265 TTGGCTTTGAACATCCACGA 58.026 45.000 0.00 0.00 0.00 4.35
3281 3532 1.522668 TGGCTTTGAACATCCACGAG 58.477 50.000 0.00 0.00 0.00 4.18
3282 3533 1.071542 TGGCTTTGAACATCCACGAGA 59.928 47.619 0.00 0.00 0.00 4.04
3283 3534 1.464997 GGCTTTGAACATCCACGAGAC 59.535 52.381 0.00 0.00 0.00 3.36
3284 3535 1.126846 GCTTTGAACATCCACGAGACG 59.873 52.381 0.00 0.00 0.00 4.18
3285 3536 2.404215 CTTTGAACATCCACGAGACGT 58.596 47.619 0.00 0.00 42.36 4.34
3305 3556 2.853914 GACGTGAGGCTTTCGTGC 59.146 61.111 19.13 9.57 37.92 5.34
3306 3557 3.000080 GACGTGAGGCTTTCGTGCG 62.000 63.158 19.13 7.08 37.92 5.34
3307 3558 3.036084 CGTGAGGCTTTCGTGCGT 61.036 61.111 0.00 0.00 0.00 5.24
3308 3559 2.853914 GTGAGGCTTTCGTGCGTC 59.146 61.111 11.32 11.32 44.93 5.19
3309 3560 2.357034 TGAGGCTTTCGTGCGTCC 60.357 61.111 14.04 0.00 44.33 4.79
3310 3561 3.119096 GAGGCTTTCGTGCGTCCC 61.119 66.667 0.00 0.00 40.63 4.46
3311 3562 3.876589 GAGGCTTTCGTGCGTCCCA 62.877 63.158 0.00 0.00 40.63 4.37
3312 3563 2.975799 GGCTTTCGTGCGTCCCAA 60.976 61.111 0.00 0.00 0.00 4.12
3313 3564 2.548295 GGCTTTCGTGCGTCCCAAA 61.548 57.895 0.00 0.00 0.00 3.28
3314 3565 1.579429 GCTTTCGTGCGTCCCAAAT 59.421 52.632 0.00 0.00 0.00 2.32
3318 3569 3.680789 CTTTCGTGCGTCCCAAATATTC 58.319 45.455 0.00 0.00 0.00 1.75
3332 3583 5.068198 CCCAAATATTCTTAGCATGTGCAGT 59.932 40.000 7.83 0.00 45.16 4.40
3335 3586 1.167851 TTCTTAGCATGTGCAGTGGC 58.832 50.000 7.83 0.00 45.16 5.01
3395 3646 1.887242 TGTCGTGGTGTGCTTGCTC 60.887 57.895 0.00 0.00 0.00 4.26
3442 3693 1.953686 TGCTCATGGATCGACGATGTA 59.046 47.619 16.49 4.02 36.38 2.29
3445 3696 3.309388 CTCATGGATCGACGATGTAACC 58.691 50.000 16.49 10.60 36.38 2.85
3463 3714 3.602390 ACCGAACGTCAATGAAACAAG 57.398 42.857 0.00 0.00 0.00 3.16
3470 3722 6.343924 CGAACGTCAATGAAACAAGTTAAAGC 60.344 38.462 0.00 0.00 0.00 3.51
3500 3752 0.320050 TACAGCACGGTCTCATGCAA 59.680 50.000 0.00 0.00 44.59 4.08
3501 3753 0.534877 ACAGCACGGTCTCATGCAAA 60.535 50.000 0.00 0.00 44.59 3.68
3502 3754 0.806868 CAGCACGGTCTCATGCAAAT 59.193 50.000 0.00 0.00 44.59 2.32
3503 3755 1.200716 CAGCACGGTCTCATGCAAATT 59.799 47.619 0.00 0.00 44.59 1.82
3540 3792 2.414559 CGAATCGCAAGTTGCCTCAATT 60.415 45.455 21.84 15.21 41.12 2.32
3545 3797 2.350388 CGCAAGTTGCCTCAATTAACGT 60.350 45.455 21.84 0.00 41.12 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.418976 CAGCATGTCAATGTCTGGAGTG 59.581 50.000 0.00 0.00 35.78 3.51
1 2 2.708051 CAGCATGTCAATGTCTGGAGT 58.292 47.619 0.00 0.00 35.78 3.85
15 16 3.132160 CTGCAGGATAGAGAACAGCATG 58.868 50.000 5.57 0.00 46.00 4.06
16 17 3.472283 CTGCAGGATAGAGAACAGCAT 57.528 47.619 5.57 0.00 0.00 3.79
17 18 2.975732 CTGCAGGATAGAGAACAGCA 57.024 50.000 5.57 0.00 0.00 4.41
18 19 1.580815 GCTGCAGGATAGAGAACAGC 58.419 55.000 17.12 0.00 43.09 4.40
19 20 1.537776 CGGCTGCAGGATAGAGAACAG 60.538 57.143 17.12 0.00 0.00 3.16
20 21 0.461548 CGGCTGCAGGATAGAGAACA 59.538 55.000 17.12 0.00 0.00 3.18
21 22 0.461961 ACGGCTGCAGGATAGAGAAC 59.538 55.000 17.12 0.00 0.00 3.01
22 23 0.747255 GACGGCTGCAGGATAGAGAA 59.253 55.000 17.12 0.00 0.00 2.87
23 24 1.448119 CGACGGCTGCAGGATAGAGA 61.448 60.000 17.12 0.00 0.00 3.10
24 25 1.007964 CGACGGCTGCAGGATAGAG 60.008 63.158 17.12 0.00 0.00 2.43
25 26 2.490148 CCGACGGCTGCAGGATAGA 61.490 63.158 17.12 0.00 0.00 1.98
26 27 2.028190 CCGACGGCTGCAGGATAG 59.972 66.667 17.12 0.00 0.00 2.08
27 28 2.441348 TCCGACGGCTGCAGGATA 60.441 61.111 17.12 0.00 0.00 2.59
28 29 3.842923 CTCCGACGGCTGCAGGAT 61.843 66.667 17.12 0.00 31.66 3.24
30 31 4.803426 GTCTCCGACGGCTGCAGG 62.803 72.222 17.12 1.57 0.00 4.85
39 40 0.392193 TAGTCCCACTCGTCTCCGAC 60.392 60.000 0.00 0.00 38.40 4.79
40 41 0.107800 CTAGTCCCACTCGTCTCCGA 60.108 60.000 0.00 0.00 41.73 4.55
41 42 0.392729 ACTAGTCCCACTCGTCTCCG 60.393 60.000 0.00 0.00 0.00 4.63
42 43 1.381522 GACTAGTCCCACTCGTCTCC 58.618 60.000 12.13 0.00 37.77 3.71
43 44 1.381522 GGACTAGTCCCACTCGTCTC 58.618 60.000 28.87 1.78 43.94 3.36
44 45 3.573626 GGACTAGTCCCACTCGTCT 57.426 57.895 28.87 0.00 43.94 4.18
54 55 1.686052 CTGAGATGGCCAGGACTAGTC 59.314 57.143 13.05 14.87 0.00 2.59
55 56 1.786937 CTGAGATGGCCAGGACTAGT 58.213 55.000 13.05 0.00 0.00 2.57
93 94 3.876255 TTTAGGGTCGGGCCTGGGT 62.876 63.158 12.87 0.00 37.43 4.51
94 95 1.933307 ATTTTAGGGTCGGGCCTGGG 61.933 60.000 12.87 0.00 37.43 4.45
95 96 0.465642 GATTTTAGGGTCGGGCCTGG 60.466 60.000 12.87 0.00 37.43 4.45
96 97 0.465642 GGATTTTAGGGTCGGGCCTG 60.466 60.000 4.71 4.71 37.43 4.85
97 98 0.917333 TGGATTTTAGGGTCGGGCCT 60.917 55.000 0.84 0.00 37.43 5.19
98 99 0.465642 CTGGATTTTAGGGTCGGGCC 60.466 60.000 0.00 0.00 0.00 5.80
99 100 0.465642 CCTGGATTTTAGGGTCGGGC 60.466 60.000 0.00 0.00 0.00 6.13
100 101 3.800826 CCTGGATTTTAGGGTCGGG 57.199 57.895 0.00 0.00 0.00 5.14
106 107 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
107 108 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
151 152 0.600057 CTCAAAAGTCAGGCCCAAGC 59.400 55.000 0.00 0.00 38.76 4.01
152 153 0.600057 GCTCAAAAGTCAGGCCCAAG 59.400 55.000 0.00 0.00 0.00 3.61
153 154 0.827507 GGCTCAAAAGTCAGGCCCAA 60.828 55.000 0.00 0.00 37.12 4.12
154 155 1.228552 GGCTCAAAAGTCAGGCCCA 60.229 57.895 0.00 0.00 37.12 5.36
155 156 3.686760 GGCTCAAAAGTCAGGCCC 58.313 61.111 0.00 0.00 37.12 5.80
157 158 1.527433 GGTGGGCTCAAAAGTCAGGC 61.527 60.000 0.00 0.00 34.44 4.85
158 159 0.178992 TGGTGGGCTCAAAAGTCAGG 60.179 55.000 0.00 0.00 0.00 3.86
159 160 1.242076 CTGGTGGGCTCAAAAGTCAG 58.758 55.000 0.00 0.00 0.00 3.51
160 161 0.550914 ACTGGTGGGCTCAAAAGTCA 59.449 50.000 0.00 0.00 0.00 3.41
161 162 2.427506 CTACTGGTGGGCTCAAAAGTC 58.572 52.381 5.71 0.00 0.00 3.01
162 163 1.073923 CCTACTGGTGGGCTCAAAAGT 59.926 52.381 7.52 7.52 0.00 2.66
163 164 1.614317 CCCTACTGGTGGGCTCAAAAG 60.614 57.143 0.00 0.00 37.99 2.27
164 165 0.404040 CCCTACTGGTGGGCTCAAAA 59.596 55.000 0.00 0.00 37.99 2.44
165 166 2.074967 CCCTACTGGTGGGCTCAAA 58.925 57.895 0.00 0.00 37.99 2.69
166 167 3.820425 CCCTACTGGTGGGCTCAA 58.180 61.111 0.00 0.00 37.99 3.02
176 177 3.470888 CCCGTCCAGGCCCTACTG 61.471 72.222 0.00 0.00 39.21 2.74
177 178 2.547123 AATCCCGTCCAGGCCCTACT 62.547 60.000 0.00 0.00 39.21 2.57
178 179 2.070650 AATCCCGTCCAGGCCCTAC 61.071 63.158 0.00 0.00 39.21 3.18
179 180 2.070039 CAATCCCGTCCAGGCCCTA 61.070 63.158 0.00 0.00 39.21 3.53
180 181 3.411517 CAATCCCGTCCAGGCCCT 61.412 66.667 0.00 0.00 39.21 5.19
181 182 4.506255 CCAATCCCGTCCAGGCCC 62.506 72.222 0.00 0.00 39.21 5.80
183 184 3.645268 AAGCCAATCCCGTCCAGGC 62.645 63.158 0.00 0.00 45.54 4.85
184 185 1.750399 CAAGCCAATCCCGTCCAGG 60.750 63.158 0.00 0.00 40.63 4.45
185 186 1.750399 CCAAGCCAATCCCGTCCAG 60.750 63.158 0.00 0.00 0.00 3.86
186 187 2.354729 CCAAGCCAATCCCGTCCA 59.645 61.111 0.00 0.00 0.00 4.02
187 188 3.140814 GCCAAGCCAATCCCGTCC 61.141 66.667 0.00 0.00 0.00 4.79
188 189 0.465460 TATGCCAAGCCAATCCCGTC 60.465 55.000 0.00 0.00 0.00 4.79
189 190 0.185901 ATATGCCAAGCCAATCCCGT 59.814 50.000 0.00 0.00 0.00 5.28
190 191 1.000060 CAATATGCCAAGCCAATCCCG 60.000 52.381 0.00 0.00 0.00 5.14
191 192 1.345415 CCAATATGCCAAGCCAATCCC 59.655 52.381 0.00 0.00 0.00 3.85
192 193 1.270465 GCCAATATGCCAAGCCAATCC 60.270 52.381 0.00 0.00 0.00 3.01
193 194 1.413445 TGCCAATATGCCAAGCCAATC 59.587 47.619 0.00 0.00 0.00 2.67
194 195 1.498264 TGCCAATATGCCAAGCCAAT 58.502 45.000 0.00 0.00 0.00 3.16
195 196 1.498264 ATGCCAATATGCCAAGCCAA 58.502 45.000 0.00 0.00 0.00 4.52
196 197 1.498264 AATGCCAATATGCCAAGCCA 58.502 45.000 0.00 0.00 0.00 4.75
197 198 2.625695 AAATGCCAATATGCCAAGCC 57.374 45.000 0.00 0.00 0.00 4.35
198 199 4.512571 CCTTAAAATGCCAATATGCCAAGC 59.487 41.667 0.00 0.00 0.00 4.01
199 200 5.916318 TCCTTAAAATGCCAATATGCCAAG 58.084 37.500 0.00 0.00 0.00 3.61
200 201 5.946942 TCCTTAAAATGCCAATATGCCAA 57.053 34.783 0.00 0.00 0.00 4.52
201 202 5.660417 TCTTCCTTAAAATGCCAATATGCCA 59.340 36.000 0.00 0.00 0.00 4.92
202 203 6.160576 TCTTCCTTAAAATGCCAATATGCC 57.839 37.500 0.00 0.00 0.00 4.40
203 204 6.218746 CCTCTTCCTTAAAATGCCAATATGC 58.781 40.000 0.00 0.00 0.00 3.14
204 205 6.218746 GCCTCTTCCTTAAAATGCCAATATG 58.781 40.000 0.00 0.00 0.00 1.78
205 206 5.305386 GGCCTCTTCCTTAAAATGCCAATAT 59.695 40.000 0.00 0.00 37.58 1.28
206 207 4.649218 GGCCTCTTCCTTAAAATGCCAATA 59.351 41.667 0.00 0.00 37.58 1.90
207 208 3.452264 GGCCTCTTCCTTAAAATGCCAAT 59.548 43.478 0.00 0.00 37.58 3.16
208 209 2.831526 GGCCTCTTCCTTAAAATGCCAA 59.168 45.455 0.00 0.00 37.58 4.52
209 210 2.456577 GGCCTCTTCCTTAAAATGCCA 58.543 47.619 0.00 0.00 37.58 4.92
210 211 1.757118 GGGCCTCTTCCTTAAAATGCC 59.243 52.381 0.84 0.00 36.92 4.40
211 212 1.405463 CGGGCCTCTTCCTTAAAATGC 59.595 52.381 0.84 0.00 0.00 3.56
212 213 2.024414 CCGGGCCTCTTCCTTAAAATG 58.976 52.381 0.84 0.00 0.00 2.32
213 214 1.685180 GCCGGGCCTCTTCCTTAAAAT 60.685 52.381 8.12 0.00 0.00 1.82
214 215 0.323087 GCCGGGCCTCTTCCTTAAAA 60.323 55.000 8.12 0.00 0.00 1.52
215 216 1.301954 GCCGGGCCTCTTCCTTAAA 59.698 57.895 8.12 0.00 0.00 1.52
216 217 2.676265 GGCCGGGCCTCTTCCTTAA 61.676 63.158 30.86 0.00 46.69 1.85
217 218 3.087906 GGCCGGGCCTCTTCCTTA 61.088 66.667 30.86 0.00 46.69 2.69
247 248 3.101643 AGCCCTAAAAAGCCCTTAAGG 57.898 47.619 15.14 15.14 39.47 2.69
248 249 5.483685 AAAAGCCCTAAAAAGCCCTTAAG 57.516 39.130 0.00 0.00 0.00 1.85
249 250 5.897851 AAAAAGCCCTAAAAAGCCCTTAA 57.102 34.783 0.00 0.00 0.00 1.85
250 251 5.246656 GGTAAAAAGCCCTAAAAAGCCCTTA 59.753 40.000 0.00 0.00 0.00 2.69
251 252 4.041198 GGTAAAAAGCCCTAAAAAGCCCTT 59.959 41.667 0.00 0.00 0.00 3.95
252 253 3.581332 GGTAAAAAGCCCTAAAAAGCCCT 59.419 43.478 0.00 0.00 0.00 5.19
253 254 3.325425 TGGTAAAAAGCCCTAAAAAGCCC 59.675 43.478 0.00 0.00 0.00 5.19
254 255 4.282449 TCTGGTAAAAAGCCCTAAAAAGCC 59.718 41.667 0.00 0.00 0.00 4.35
255 256 5.462530 TCTGGTAAAAAGCCCTAAAAAGC 57.537 39.130 0.00 0.00 0.00 3.51
256 257 6.398095 CCATCTGGTAAAAAGCCCTAAAAAG 58.602 40.000 0.00 0.00 0.00 2.27
257 258 5.247337 CCCATCTGGTAAAAAGCCCTAAAAA 59.753 40.000 0.00 0.00 0.00 1.94
258 259 4.775253 CCCATCTGGTAAAAAGCCCTAAAA 59.225 41.667 0.00 0.00 0.00 1.52
259 260 4.349365 CCCATCTGGTAAAAAGCCCTAAA 58.651 43.478 0.00 0.00 0.00 1.85
260 261 3.880117 GCCCATCTGGTAAAAAGCCCTAA 60.880 47.826 0.00 0.00 36.04 2.69
261 262 2.357777 GCCCATCTGGTAAAAAGCCCTA 60.358 50.000 0.00 0.00 36.04 3.53
262 263 1.619704 GCCCATCTGGTAAAAAGCCCT 60.620 52.381 0.00 0.00 36.04 5.19
263 264 0.824109 GCCCATCTGGTAAAAAGCCC 59.176 55.000 0.00 0.00 36.04 5.19
264 265 0.824109 GGCCCATCTGGTAAAAAGCC 59.176 55.000 0.00 0.00 36.04 4.35
265 266 0.455815 CGGCCCATCTGGTAAAAAGC 59.544 55.000 0.00 0.00 36.04 3.51
266 267 1.102978 CCGGCCCATCTGGTAAAAAG 58.897 55.000 0.00 0.00 36.43 2.27
267 268 0.323908 CCCGGCCCATCTGGTAAAAA 60.324 55.000 0.00 0.00 39.73 1.94
268 269 1.304952 CCCGGCCCATCTGGTAAAA 59.695 57.895 0.00 0.00 39.73 1.52
269 270 3.003230 CCCGGCCCATCTGGTAAA 58.997 61.111 0.00 0.00 39.73 2.01
270 271 3.804329 GCCCGGCCCATCTGGTAA 61.804 66.667 0.00 0.00 39.73 2.85
271 272 4.815973 AGCCCGGCCCATCTGGTA 62.816 66.667 5.55 0.00 39.73 3.25
282 283 1.543944 ATTTTCAAGCCCAAGCCCGG 61.544 55.000 0.00 0.00 41.25 5.73
283 284 0.321346 AATTTTCAAGCCCAAGCCCG 59.679 50.000 0.00 0.00 41.25 6.13
284 285 2.093500 CCTAATTTTCAAGCCCAAGCCC 60.093 50.000 0.00 0.00 41.25 5.19
285 286 2.677902 GCCTAATTTTCAAGCCCAAGCC 60.678 50.000 0.00 0.00 41.25 4.35
286 287 2.621338 GCCTAATTTTCAAGCCCAAGC 58.379 47.619 0.00 0.00 40.32 4.01
287 288 3.251479 GGCCTAATTTTCAAGCCCAAG 57.749 47.619 0.00 0.00 37.66 3.61
291 292 2.094026 CACTGGGCCTAATTTTCAAGCC 60.094 50.000 4.53 0.00 43.09 4.35
292 293 2.825532 TCACTGGGCCTAATTTTCAAGC 59.174 45.455 4.53 0.00 0.00 4.01
293 294 5.300286 CCTATCACTGGGCCTAATTTTCAAG 59.700 44.000 4.53 0.00 0.00 3.02
294 295 5.200483 CCTATCACTGGGCCTAATTTTCAA 58.800 41.667 4.53 0.00 0.00 2.69
295 296 4.792068 CCTATCACTGGGCCTAATTTTCA 58.208 43.478 4.53 0.00 0.00 2.69
296 297 3.570125 GCCTATCACTGGGCCTAATTTTC 59.430 47.826 4.53 0.00 42.99 2.29
297 298 3.566351 GCCTATCACTGGGCCTAATTTT 58.434 45.455 4.53 0.00 42.99 1.82
298 299 3.229697 GCCTATCACTGGGCCTAATTT 57.770 47.619 4.53 0.00 42.99 1.82
299 300 2.959465 GCCTATCACTGGGCCTAATT 57.041 50.000 4.53 0.00 42.99 1.40
308 309 1.414061 CCCTCCCAGGCCTATCACTG 61.414 65.000 3.98 0.00 32.73 3.66
309 310 1.074167 CCCTCCCAGGCCTATCACT 60.074 63.158 3.98 0.00 32.73 3.41
310 311 3.568578 CCCTCCCAGGCCTATCAC 58.431 66.667 3.98 0.00 32.73 3.06
330 331 1.228552 GGCAGAAAACTGAGGCCCA 60.229 57.895 0.00 0.00 38.70 5.36
331 332 2.335712 CGGCAGAAAACTGAGGCCC 61.336 63.158 0.00 0.00 41.58 5.80
332 333 1.600916 ACGGCAGAAAACTGAGGCC 60.601 57.895 0.00 0.00 41.20 5.19
333 334 1.576421 CACGGCAGAAAACTGAGGC 59.424 57.895 0.00 0.00 0.00 4.70
334 335 1.237285 CCCACGGCAGAAAACTGAGG 61.237 60.000 0.00 0.00 0.00 3.86
335 336 2.247790 CCCACGGCAGAAAACTGAG 58.752 57.895 0.00 0.00 0.00 3.35
336 337 4.473643 CCCACGGCAGAAAACTGA 57.526 55.556 0.00 0.00 0.00 3.41
347 348 2.650778 GCCTGAAAAAGCCCACGG 59.349 61.111 0.00 0.00 0.00 4.94
348 349 2.650778 GGCCTGAAAAAGCCCACG 59.349 61.111 0.00 0.00 43.76 4.94
353 354 4.069232 GGCCGGGCCTGAAAAAGC 62.069 66.667 30.86 7.24 46.69 3.51
390 391 2.291153 CCCACTTATATCTGGCCATGGG 60.291 54.545 19.79 19.79 39.68 4.00
391 392 2.644299 TCCCACTTATATCTGGCCATGG 59.356 50.000 5.51 7.63 0.00 3.66
392 393 3.560025 GGTCCCACTTATATCTGGCCATG 60.560 52.174 5.51 0.00 0.00 3.66
393 394 2.644798 GGTCCCACTTATATCTGGCCAT 59.355 50.000 5.51 0.00 0.00 4.40
394 395 2.054799 GGTCCCACTTATATCTGGCCA 58.945 52.381 4.71 4.71 0.00 5.36
395 396 2.054799 TGGTCCCACTTATATCTGGCC 58.945 52.381 0.00 0.00 0.00 5.36
396 397 2.224548 GGTGGTCCCACTTATATCTGGC 60.225 54.545 15.67 0.00 45.52 4.85
397 398 2.037251 CGGTGGTCCCACTTATATCTGG 59.963 54.545 15.67 0.00 45.52 3.86
398 399 2.037251 CCGGTGGTCCCACTTATATCTG 59.963 54.545 15.67 0.00 45.52 2.90
399 400 2.090943 TCCGGTGGTCCCACTTATATCT 60.091 50.000 15.67 0.00 45.52 1.98
400 401 2.322658 TCCGGTGGTCCCACTTATATC 58.677 52.381 15.67 0.00 45.52 1.63
401 402 2.482414 TCCGGTGGTCCCACTTATAT 57.518 50.000 15.67 0.00 45.52 0.86
402 403 2.236893 GTTTCCGGTGGTCCCACTTATA 59.763 50.000 15.67 0.00 45.52 0.98
403 404 1.003928 GTTTCCGGTGGTCCCACTTAT 59.996 52.381 15.67 0.00 45.52 1.73
404 405 0.397564 GTTTCCGGTGGTCCCACTTA 59.602 55.000 15.67 0.00 45.52 2.24
405 406 1.149854 GTTTCCGGTGGTCCCACTT 59.850 57.895 15.67 0.00 45.52 3.16
406 407 2.052047 CTGTTTCCGGTGGTCCCACT 62.052 60.000 15.67 0.00 45.52 4.00
407 408 1.599797 CTGTTTCCGGTGGTCCCAC 60.600 63.158 7.98 7.98 45.49 4.61
408 409 2.833227 CTGTTTCCGGTGGTCCCA 59.167 61.111 0.00 0.00 0.00 4.37
409 410 2.671963 GCTGTTTCCGGTGGTCCC 60.672 66.667 0.00 0.00 0.00 4.46
410 411 1.671379 GAGCTGTTTCCGGTGGTCC 60.671 63.158 0.00 0.00 0.00 4.46
411 412 1.671379 GGAGCTGTTTCCGGTGGTC 60.671 63.158 0.00 3.30 0.00 4.02
412 413 2.430367 GGAGCTGTTTCCGGTGGT 59.570 61.111 0.00 0.00 0.00 4.16
430 431 2.004808 TAGCAGCCCGACGACATCTG 62.005 60.000 0.00 0.00 0.00 2.90
431 432 1.729470 CTAGCAGCCCGACGACATCT 61.729 60.000 0.00 0.00 0.00 2.90
432 433 1.299468 CTAGCAGCCCGACGACATC 60.299 63.158 0.00 0.00 0.00 3.06
433 434 1.605058 AACTAGCAGCCCGACGACAT 61.605 55.000 0.00 0.00 0.00 3.06
434 435 1.812686 AAACTAGCAGCCCGACGACA 61.813 55.000 0.00 0.00 0.00 4.35
435 436 0.669625 AAAACTAGCAGCCCGACGAC 60.670 55.000 0.00 0.00 0.00 4.34
436 437 0.034337 AAAAACTAGCAGCCCGACGA 59.966 50.000 0.00 0.00 0.00 4.20
438 439 1.235724 ACAAAAACTAGCAGCCCGAC 58.764 50.000 0.00 0.00 0.00 4.79
439 440 1.877443 GAACAAAAACTAGCAGCCCGA 59.123 47.619 0.00 0.00 0.00 5.14
441 442 2.095718 CGAGAACAAAAACTAGCAGCCC 60.096 50.000 0.00 0.00 0.00 5.19
443 444 3.545633 CACGAGAACAAAAACTAGCAGC 58.454 45.455 0.00 0.00 0.00 5.25
444 445 3.058914 CCCACGAGAACAAAAACTAGCAG 60.059 47.826 0.00 0.00 0.00 4.24
445 446 2.875933 CCCACGAGAACAAAAACTAGCA 59.124 45.455 0.00 0.00 0.00 3.49
447 448 2.225727 GGCCCACGAGAACAAAAACTAG 59.774 50.000 0.00 0.00 0.00 2.57
448 449 2.223745 GGCCCACGAGAACAAAAACTA 58.776 47.619 0.00 0.00 0.00 2.24
449 450 1.029681 GGCCCACGAGAACAAAAACT 58.970 50.000 0.00 0.00 0.00 2.66
450 451 0.741915 TGGCCCACGAGAACAAAAAC 59.258 50.000 0.00 0.00 0.00 2.43
458 459 1.899437 GATGGAACTGGCCCACGAGA 61.899 60.000 0.00 0.00 36.36 4.04
459 460 1.450312 GATGGAACTGGCCCACGAG 60.450 63.158 0.00 0.00 36.36 4.18
470 471 1.087771 CGTGGGCTAACGGATGGAAC 61.088 60.000 5.53 0.00 39.89 3.62
514 538 1.101049 CGAGGACTCTGAGAGGGAGC 61.101 65.000 14.83 0.15 33.35 4.70
518 542 1.663695 GAGACGAGGACTCTGAGAGG 58.336 60.000 14.83 0.00 33.35 3.69
573 613 1.334239 CCACGGAAGAGATCGATCGAC 60.334 57.143 22.06 14.23 0.00 4.20
625 666 1.801771 TGGTAAAGGAATGAACGCGTG 59.198 47.619 14.98 0.00 0.00 5.34
629 670 1.129811 GGCGTGGTAAAGGAATGAACG 59.870 52.381 0.00 0.00 0.00 3.95
691 732 0.747283 GCTTGCCTAGATGCTGCTGT 60.747 55.000 0.00 0.00 0.00 4.40
734 775 2.703409 GCTTACCTGCGCATCGTG 59.297 61.111 12.24 0.00 0.00 4.35
735 776 2.511600 GGCTTACCTGCGCATCGT 60.512 61.111 12.24 13.33 0.00 3.73
768 809 4.817063 CGGCGGCATGAAACAGCG 62.817 66.667 10.53 0.00 0.00 5.18
806 850 3.551890 CGGATCAAAACATAGTCGGTCAG 59.448 47.826 0.00 0.00 0.00 3.51
808 852 3.306166 CACGGATCAAAACATAGTCGGTC 59.694 47.826 0.00 0.00 0.00 4.79
810 854 2.030457 GCACGGATCAAAACATAGTCGG 59.970 50.000 0.00 0.00 0.00 4.79
1045 1089 2.438434 CGCCAAATTCTCCGCCCT 60.438 61.111 0.00 0.00 0.00 5.19
1046 1090 3.518068 CCGCCAAATTCTCCGCCC 61.518 66.667 0.00 0.00 0.00 6.13
1047 1091 4.193334 GCCGCCAAATTCTCCGCC 62.193 66.667 0.00 0.00 0.00 6.13
1051 1095 1.976474 TGGGTGCCGCCAAATTCTC 60.976 57.895 0.00 0.00 39.65 2.87
1052 1096 2.117206 TGGGTGCCGCCAAATTCT 59.883 55.556 0.00 0.00 39.65 2.40
1083 1127 1.214062 CGTCACACTCCCTGCTCTC 59.786 63.158 0.00 0.00 0.00 3.20
1230 1274 0.780637 TCTCCACTCTCACCTCAGGT 59.219 55.000 0.00 0.00 35.62 4.00
1423 1476 0.695803 AGTAGAAGGCTGGGATGGGG 60.696 60.000 0.00 0.00 0.00 4.96
1427 1480 3.406512 ACAGTAGTAGAAGGCTGGGAT 57.593 47.619 0.00 0.00 33.62 3.85
1431 1484 7.274447 AGTACTAGTACAGTAGTAGAAGGCTG 58.726 42.308 29.87 2.65 40.89 4.85
1432 1485 7.418942 GGAGTACTAGTACAGTAGTAGAAGGCT 60.419 44.444 29.87 16.03 42.42 4.58
1457 1516 9.449719 AAACAACCAAATCTGTAGAATAGTAGG 57.550 33.333 0.00 0.00 0.00 3.18
1487 1546 8.617809 GTGTCAAACAGGAGTGAAATTACTAAA 58.382 33.333 0.00 0.00 0.00 1.85
1488 1547 7.042321 CGTGTCAAACAGGAGTGAAATTACTAA 60.042 37.037 0.00 0.00 36.17 2.24
1498 1557 1.934589 TCACGTGTCAAACAGGAGTG 58.065 50.000 16.51 5.62 37.42 3.51
1725 1801 3.865011 ATGCAACATCATGCCGTAAAA 57.135 38.095 0.00 0.00 45.83 1.52
1745 1821 1.264749 ATCGGCAGGAGCACCTACAA 61.265 55.000 1.02 0.00 45.94 2.41
1757 1833 2.322830 CCCATCGCATGATCGGCAG 61.323 63.158 0.00 3.25 30.49 4.85
2015 2091 7.663081 CAGGGCACACTATCATACTCATATTTT 59.337 37.037 0.00 0.00 0.00 1.82
2018 2094 6.019108 TCAGGGCACACTATCATACTCATAT 58.981 40.000 0.00 0.00 0.00 1.78
2023 2099 5.367937 AGAATTCAGGGCACACTATCATACT 59.632 40.000 8.44 0.00 0.00 2.12
2031 2122 1.065126 GGCTAGAATTCAGGGCACACT 60.065 52.381 8.44 0.00 0.00 3.55
2050 2141 1.202222 GCATTCGGAAACAGATGCAGG 60.202 52.381 8.06 0.00 43.73 4.85
2061 2153 0.323269 TCCCTGCAATGCATTCGGAA 60.323 50.000 8.91 0.00 38.13 4.30
2070 2162 3.565764 TCTCTAACCATCCCTGCAATG 57.434 47.619 0.00 0.00 0.00 2.82
2074 2166 3.914426 TTCTTCTCTAACCATCCCTGC 57.086 47.619 0.00 0.00 0.00 4.85
2110 2202 1.093159 CAGCCAGTTTGATCAGAGCC 58.907 55.000 0.00 0.00 0.00 4.70
2131 2223 2.610859 TGGAACCAGCCCCCTCTC 60.611 66.667 0.00 0.00 0.00 3.20
2201 2293 2.805671 TGACGGTTGCAACATAGTTGAG 59.194 45.455 29.55 12.42 0.00 3.02
2219 2311 2.427506 GGTGAACTTGATCTGGGTGAC 58.572 52.381 0.00 0.00 0.00 3.67
2324 2416 4.537135 TCCGATCTCCTATTTATGGTGC 57.463 45.455 0.00 0.00 0.00 5.01
2344 2517 7.800300 ATTATCTTGGTTAGGAGGGAGTATC 57.200 40.000 0.00 0.00 0.00 2.24
2366 2539 1.966762 CCGGCCACTGCTCAAAATT 59.033 52.632 2.24 0.00 37.74 1.82
2373 2546 3.984193 GAATCAGCCGGCCACTGCT 62.984 63.158 26.15 11.28 37.69 4.24
2585 2778 2.279120 CGATCACTGAGCTCCGGC 60.279 66.667 12.15 0.00 39.06 6.13
2627 2823 3.207265 TGCCACTACACAACATCAACT 57.793 42.857 0.00 0.00 0.00 3.16
2674 2918 1.081892 CACCTGCAGTTCTTCATCCG 58.918 55.000 13.81 0.00 0.00 4.18
2690 2934 1.177401 GGCTGGATCTTTCAACCACC 58.823 55.000 0.00 0.00 0.00 4.61
2739 2983 0.866906 CAACCAACACAAGTGCTGCG 60.867 55.000 0.00 0.00 0.00 5.18
2762 3006 3.045601 AGTCTTGATCTTTCACACCCG 57.954 47.619 0.00 0.00 0.00 5.28
2828 3072 6.642707 TGTTTTCCAACTGAATAAATCCGT 57.357 33.333 0.00 0.00 33.58 4.69
2832 3076 8.788806 TCGTGTATGTTTTCCAACTGAATAAAT 58.211 29.630 0.00 0.00 33.58 1.40
2852 3096 4.576873 TGTTTTCCTTCTGCAATTCGTGTA 59.423 37.500 0.00 0.00 0.00 2.90
2861 3105 1.021202 CACCGTGTTTTCCTTCTGCA 58.979 50.000 0.00 0.00 0.00 4.41
2876 3120 2.183555 GGAGCCTAACCGTCACCG 59.816 66.667 0.00 0.00 0.00 4.94
2895 3141 3.296709 AAGCTACCGCGACACCAGG 62.297 63.158 8.23 0.00 42.32 4.45
2903 3149 1.132588 GCTTATGAGAAGCTACCGCG 58.867 55.000 4.29 0.00 42.32 6.46
2914 3160 8.980610 TCACAAAATGAAACAAATGCTTATGAG 58.019 29.630 0.00 0.00 33.02 2.90
3019 3270 4.024670 ACGGATACTAGAAAGGCAAGAGT 58.975 43.478 0.00 0.00 0.00 3.24
3022 3273 3.385111 AGGACGGATACTAGAAAGGCAAG 59.615 47.826 0.00 0.00 0.00 4.01
3027 3278 7.571080 AAGTAAGAGGACGGATACTAGAAAG 57.429 40.000 0.00 0.00 0.00 2.62
3029 3280 7.114754 TCAAAGTAAGAGGACGGATACTAGAA 58.885 38.462 0.00 0.00 0.00 2.10
3040 3291 6.468543 AGGAACTGATTCAAAGTAAGAGGAC 58.531 40.000 0.00 0.00 37.18 3.85
3046 3297 8.429641 AGTCTGTAAGGAACTGATTCAAAGTAA 58.570 33.333 0.00 0.00 40.86 2.24
3048 3299 6.831976 AGTCTGTAAGGAACTGATTCAAAGT 58.168 36.000 0.00 0.00 40.86 2.66
3055 3306 4.678256 TCTGGAGTCTGTAAGGAACTGAT 58.322 43.478 0.00 0.00 40.86 2.90
3056 3307 4.082845 CTCTGGAGTCTGTAAGGAACTGA 58.917 47.826 0.00 0.00 40.86 3.41
3057 3308 3.829601 ACTCTGGAGTCTGTAAGGAACTG 59.170 47.826 0.00 0.00 35.94 3.16
3058 3309 4.120946 ACTCTGGAGTCTGTAAGGAACT 57.879 45.455 0.00 0.00 37.42 3.01
3059 3310 4.875561 AACTCTGGAGTCTGTAAGGAAC 57.124 45.455 3.60 0.00 41.58 3.62
3060 3311 4.654262 ACAAACTCTGGAGTCTGTAAGGAA 59.346 41.667 7.81 0.00 40.52 3.36
3061 3312 4.223953 ACAAACTCTGGAGTCTGTAAGGA 58.776 43.478 7.81 0.00 40.52 3.36
3062 3313 4.608948 ACAAACTCTGGAGTCTGTAAGG 57.391 45.455 7.81 0.00 40.52 2.69
3063 3314 5.601662 TGAACAAACTCTGGAGTCTGTAAG 58.398 41.667 9.69 0.00 41.37 2.34
3064 3315 5.453339 CCTGAACAAACTCTGGAGTCTGTAA 60.453 44.000 9.69 2.39 41.37 2.41
3065 3316 4.039245 CCTGAACAAACTCTGGAGTCTGTA 59.961 45.833 9.69 0.00 41.37 2.74
3066 3317 3.181461 CCTGAACAAACTCTGGAGTCTGT 60.181 47.826 4.11 4.11 43.85 3.41
3067 3318 3.397482 CCTGAACAAACTCTGGAGTCTG 58.603 50.000 3.60 3.22 41.58 3.51
3068 3319 2.370189 CCCTGAACAAACTCTGGAGTCT 59.630 50.000 3.60 0.00 41.58 3.24
3069 3320 2.104963 ACCCTGAACAAACTCTGGAGTC 59.895 50.000 3.60 0.00 41.58 3.36
3070 3321 2.127708 ACCCTGAACAAACTCTGGAGT 58.872 47.619 0.00 0.00 44.94 3.85
3071 3322 2.938956 ACCCTGAACAAACTCTGGAG 57.061 50.000 0.00 0.00 36.74 3.86
3072 3323 3.053991 TGAAACCCTGAACAAACTCTGGA 60.054 43.478 0.00 0.00 36.74 3.86
3073 3324 3.287222 TGAAACCCTGAACAAACTCTGG 58.713 45.455 0.00 0.00 34.92 3.86
3074 3325 3.316308 CCTGAAACCCTGAACAAACTCTG 59.684 47.826 0.00 0.00 0.00 3.35
3075 3326 3.555966 CCTGAAACCCTGAACAAACTCT 58.444 45.455 0.00 0.00 0.00 3.24
3076 3327 2.034685 GCCTGAAACCCTGAACAAACTC 59.965 50.000 0.00 0.00 0.00 3.01
3077 3328 2.031870 GCCTGAAACCCTGAACAAACT 58.968 47.619 0.00 0.00 0.00 2.66
3078 3329 1.269051 CGCCTGAAACCCTGAACAAAC 60.269 52.381 0.00 0.00 0.00 2.93
3079 3330 1.028905 CGCCTGAAACCCTGAACAAA 58.971 50.000 0.00 0.00 0.00 2.83
3080 3331 1.452145 GCGCCTGAAACCCTGAACAA 61.452 55.000 0.00 0.00 0.00 2.83
3081 3332 1.896660 GCGCCTGAAACCCTGAACA 60.897 57.895 0.00 0.00 0.00 3.18
3082 3333 2.954611 GCGCCTGAAACCCTGAAC 59.045 61.111 0.00 0.00 0.00 3.18
3083 3334 2.668212 CGCGCCTGAAACCCTGAA 60.668 61.111 0.00 0.00 0.00 3.02
3086 3337 2.813226 TAATGCGCGCCTGAAACCCT 62.813 55.000 30.77 3.96 0.00 4.34
3087 3338 2.403378 TAATGCGCGCCTGAAACCC 61.403 57.895 30.77 0.00 0.00 4.11
3088 3339 1.226295 GTAATGCGCGCCTGAAACC 60.226 57.895 30.77 6.01 0.00 3.27
3089 3340 1.580132 CGTAATGCGCGCCTGAAAC 60.580 57.895 30.77 17.67 0.00 2.78
3090 3341 2.781957 CGTAATGCGCGCCTGAAA 59.218 55.556 30.77 10.13 0.00 2.69
3100 3351 4.923281 ACAAATTTGGAAGAAGCGTAATGC 59.077 37.500 21.74 0.00 46.98 3.56
3101 3352 5.920273 ACACAAATTTGGAAGAAGCGTAATG 59.080 36.000 21.74 8.71 0.00 1.90
3102 3353 6.084326 ACACAAATTTGGAAGAAGCGTAAT 57.916 33.333 21.74 0.00 0.00 1.89
3103 3354 5.506649 GGACACAAATTTGGAAGAAGCGTAA 60.507 40.000 21.74 0.00 0.00 3.18
3104 3355 4.023536 GGACACAAATTTGGAAGAAGCGTA 60.024 41.667 21.74 0.00 0.00 4.42
3105 3356 3.243401 GGACACAAATTTGGAAGAAGCGT 60.243 43.478 21.74 5.95 0.00 5.07
3106 3357 3.004734 AGGACACAAATTTGGAAGAAGCG 59.995 43.478 21.74 3.11 0.00 4.68
3107 3358 4.301628 CAGGACACAAATTTGGAAGAAGC 58.698 43.478 21.74 4.44 0.00 3.86
3108 3359 4.038402 AGCAGGACACAAATTTGGAAGAAG 59.962 41.667 21.74 8.88 0.00 2.85
3109 3360 3.960102 AGCAGGACACAAATTTGGAAGAA 59.040 39.130 21.74 0.00 0.00 2.52
3110 3361 3.565307 AGCAGGACACAAATTTGGAAGA 58.435 40.909 21.74 0.00 0.00 2.87
3111 3362 5.183713 TGATAGCAGGACACAAATTTGGAAG 59.816 40.000 21.74 13.25 0.00 3.46
3112 3363 5.076182 TGATAGCAGGACACAAATTTGGAA 58.924 37.500 21.74 0.00 0.00 3.53
3113 3364 4.661222 TGATAGCAGGACACAAATTTGGA 58.339 39.130 21.74 0.00 0.00 3.53
3114 3365 4.990257 CTGATAGCAGGACACAAATTTGG 58.010 43.478 21.74 12.94 38.51 3.28
3127 3378 3.136763 CAGCATGGTTACCTGATAGCAG 58.863 50.000 0.00 0.00 41.93 4.24
3128 3379 2.771372 TCAGCATGGTTACCTGATAGCA 59.229 45.455 2.07 0.00 36.16 3.49
3129 3380 3.475566 TCAGCATGGTTACCTGATAGC 57.524 47.619 2.07 0.00 36.16 2.97
3130 3381 4.813161 CAGTTCAGCATGGTTACCTGATAG 59.187 45.833 2.07 0.00 35.72 2.08
3131 3382 4.225042 ACAGTTCAGCATGGTTACCTGATA 59.775 41.667 10.19 0.00 35.72 2.15
3132 3383 3.009473 ACAGTTCAGCATGGTTACCTGAT 59.991 43.478 10.19 0.00 35.72 2.90
3133 3384 2.371841 ACAGTTCAGCATGGTTACCTGA 59.628 45.455 10.19 3.57 36.16 3.86
3134 3385 2.783135 ACAGTTCAGCATGGTTACCTG 58.217 47.619 2.07 2.48 36.16 4.00
3135 3386 3.149196 CAACAGTTCAGCATGGTTACCT 58.851 45.455 2.07 0.00 36.16 3.08
3136 3387 2.228822 CCAACAGTTCAGCATGGTTACC 59.771 50.000 0.00 0.00 36.16 2.85
3137 3388 3.146066 TCCAACAGTTCAGCATGGTTAC 58.854 45.455 0.00 0.00 36.16 2.50
3138 3389 3.181445 ACTCCAACAGTTCAGCATGGTTA 60.181 43.478 0.00 0.00 36.16 2.85
3139 3390 2.233271 CTCCAACAGTTCAGCATGGTT 58.767 47.619 0.00 0.00 36.16 3.67
3140 3391 1.143684 ACTCCAACAGTTCAGCATGGT 59.856 47.619 0.00 0.00 36.16 3.55
3141 3392 1.538512 CACTCCAACAGTTCAGCATGG 59.461 52.381 0.00 0.00 30.87 3.66
3142 3393 2.224606 ACACTCCAACAGTTCAGCATG 58.775 47.619 0.00 0.00 30.26 4.06
3143 3394 2.620115 CAACACTCCAACAGTTCAGCAT 59.380 45.455 0.00 0.00 30.26 3.79
3144 3395 2.016318 CAACACTCCAACAGTTCAGCA 58.984 47.619 0.00 0.00 30.26 4.41
3145 3396 1.334869 CCAACACTCCAACAGTTCAGC 59.665 52.381 0.00 0.00 30.26 4.26
3146 3397 2.355756 CACCAACACTCCAACAGTTCAG 59.644 50.000 0.00 0.00 30.26 3.02
3147 3398 2.364632 CACCAACACTCCAACAGTTCA 58.635 47.619 0.00 0.00 30.26 3.18
3148 3399 1.065551 GCACCAACACTCCAACAGTTC 59.934 52.381 0.00 0.00 30.26 3.01
3149 3400 1.102978 GCACCAACACTCCAACAGTT 58.897 50.000 0.00 0.00 30.26 3.16
3150 3401 0.034574 TGCACCAACACTCCAACAGT 60.035 50.000 0.00 0.00 34.67 3.55
3151 3402 0.381801 GTGCACCAACACTCCAACAG 59.618 55.000 5.22 0.00 37.58 3.16
3152 3403 1.372838 CGTGCACCAACACTCCAACA 61.373 55.000 12.15 0.00 38.45 3.33
3153 3404 1.355210 CGTGCACCAACACTCCAAC 59.645 57.895 12.15 0.00 38.45 3.77
3154 3405 1.078072 ACGTGCACCAACACTCCAA 60.078 52.632 12.15 0.00 38.45 3.53
3155 3406 1.522806 GACGTGCACCAACACTCCA 60.523 57.895 12.15 0.00 38.45 3.86
3156 3407 0.032952 TAGACGTGCACCAACACTCC 59.967 55.000 12.15 0.00 38.45 3.85
3157 3408 1.269621 ACTAGACGTGCACCAACACTC 60.270 52.381 12.15 0.00 38.45 3.51
3158 3409 0.750850 ACTAGACGTGCACCAACACT 59.249 50.000 12.15 6.24 38.45 3.55
3159 3410 1.260561 CAACTAGACGTGCACCAACAC 59.739 52.381 12.15 0.00 37.19 3.32
3160 3411 1.134640 ACAACTAGACGTGCACCAACA 60.135 47.619 12.15 0.00 0.00 3.33
3161 3412 1.578583 ACAACTAGACGTGCACCAAC 58.421 50.000 12.15 2.79 0.00 3.77
3162 3413 2.319136 AACAACTAGACGTGCACCAA 57.681 45.000 12.15 0.00 0.00 3.67
3163 3414 2.206750 GAAACAACTAGACGTGCACCA 58.793 47.619 12.15 0.00 0.00 4.17
3164 3415 2.033151 GTGAAACAACTAGACGTGCACC 60.033 50.000 12.15 0.00 36.32 5.01
3165 3416 2.033151 GGTGAAACAACTAGACGTGCAC 60.033 50.000 6.82 6.82 39.98 4.57
3166 3417 2.206750 GGTGAAACAACTAGACGTGCA 58.793 47.619 0.00 0.00 39.98 4.57
3167 3418 2.206750 TGGTGAAACAACTAGACGTGC 58.793 47.619 0.00 0.00 39.98 5.34
3168 3419 2.221055 GCTGGTGAAACAACTAGACGTG 59.779 50.000 0.00 0.00 39.98 4.49
3169 3420 2.480845 GCTGGTGAAACAACTAGACGT 58.519 47.619 0.00 0.00 39.98 4.34
3170 3421 1.798813 GGCTGGTGAAACAACTAGACG 59.201 52.381 0.00 0.00 39.98 4.18
3171 3422 2.152016 GGGCTGGTGAAACAACTAGAC 58.848 52.381 0.00 0.00 39.98 2.59
3172 3423 2.054799 AGGGCTGGTGAAACAACTAGA 58.945 47.619 0.00 0.00 39.98 2.43
3173 3424 2.568623 AGGGCTGGTGAAACAACTAG 57.431 50.000 0.00 0.00 39.98 2.57
3174 3425 3.219281 GAAAGGGCTGGTGAAACAACTA 58.781 45.455 0.00 0.00 39.98 2.24
3175 3426 2.031870 GAAAGGGCTGGTGAAACAACT 58.968 47.619 0.00 0.00 39.98 3.16
3176 3427 1.068588 GGAAAGGGCTGGTGAAACAAC 59.931 52.381 0.00 0.00 39.98 3.32
3177 3428 1.408969 GGAAAGGGCTGGTGAAACAA 58.591 50.000 0.00 0.00 39.98 2.83
3178 3429 0.469144 GGGAAAGGGCTGGTGAAACA 60.469 55.000 0.00 0.00 39.98 2.83
3179 3430 1.185618 GGGGAAAGGGCTGGTGAAAC 61.186 60.000 0.00 0.00 0.00 2.78
3180 3431 1.155155 GGGGAAAGGGCTGGTGAAA 59.845 57.895 0.00 0.00 0.00 2.69
3181 3432 2.851045 GGGGAAAGGGCTGGTGAA 59.149 61.111 0.00 0.00 0.00 3.18
3182 3433 3.264845 GGGGGAAAGGGCTGGTGA 61.265 66.667 0.00 0.00 0.00 4.02
3183 3434 3.268032 AGGGGGAAAGGGCTGGTG 61.268 66.667 0.00 0.00 0.00 4.17
3184 3435 3.268032 CAGGGGGAAAGGGCTGGT 61.268 66.667 0.00 0.00 0.00 4.00
3185 3436 4.066139 CCAGGGGGAAAGGGCTGG 62.066 72.222 0.00 0.00 35.59 4.85
3186 3437 2.941025 TCCAGGGGGAAAGGGCTG 60.941 66.667 0.00 0.00 41.32 4.85
3194 3445 0.421495 TCAATCTCCTTCCAGGGGGA 59.579 55.000 2.70 2.70 43.03 4.81
3195 3446 1.298953 TTCAATCTCCTTCCAGGGGG 58.701 55.000 0.00 0.00 36.18 5.40
3196 3447 2.310052 AGTTTCAATCTCCTTCCAGGGG 59.690 50.000 0.00 0.00 37.13 4.79
3197 3448 3.009473 TCAGTTTCAATCTCCTTCCAGGG 59.991 47.826 0.00 0.00 35.59 4.45
3198 3449 4.292186 TCAGTTTCAATCTCCTTCCAGG 57.708 45.455 0.00 0.00 36.46 4.45
3199 3450 5.767168 AGTTTCAGTTTCAATCTCCTTCCAG 59.233 40.000 0.00 0.00 0.00 3.86
3200 3451 5.532406 CAGTTTCAGTTTCAATCTCCTTCCA 59.468 40.000 0.00 0.00 0.00 3.53
3201 3452 5.563671 GCAGTTTCAGTTTCAATCTCCTTCC 60.564 44.000 0.00 0.00 0.00 3.46
3202 3453 5.009010 TGCAGTTTCAGTTTCAATCTCCTTC 59.991 40.000 0.00 0.00 0.00 3.46
3203 3454 4.889409 TGCAGTTTCAGTTTCAATCTCCTT 59.111 37.500 0.00 0.00 0.00 3.36
3204 3455 4.464008 TGCAGTTTCAGTTTCAATCTCCT 58.536 39.130 0.00 0.00 0.00 3.69
3205 3456 4.836125 TGCAGTTTCAGTTTCAATCTCC 57.164 40.909 0.00 0.00 0.00 3.71
3206 3457 5.766222 ACATGCAGTTTCAGTTTCAATCTC 58.234 37.500 0.00 0.00 0.00 2.75
3207 3458 5.779529 ACATGCAGTTTCAGTTTCAATCT 57.220 34.783 0.00 0.00 0.00 2.40
3220 3471 2.507484 TCAGCTAGCAAACATGCAGTT 58.493 42.857 18.83 0.00 43.89 3.16
3221 3472 2.189594 TCAGCTAGCAAACATGCAGT 57.810 45.000 18.83 0.00 37.25 4.40
3222 3473 3.499048 CTTTCAGCTAGCAAACATGCAG 58.501 45.455 18.83 1.99 37.25 4.41
3223 3474 2.229543 CCTTTCAGCTAGCAAACATGCA 59.770 45.455 18.83 0.00 37.25 3.96
3224 3475 2.872370 CCTTTCAGCTAGCAAACATGC 58.128 47.619 18.83 0.00 0.00 4.06
3225 3476 2.490903 AGCCTTTCAGCTAGCAAACATG 59.509 45.455 18.83 6.00 42.70 3.21
3226 3477 2.490903 CAGCCTTTCAGCTAGCAAACAT 59.509 45.455 18.83 0.00 42.61 2.71
3227 3478 1.881973 CAGCCTTTCAGCTAGCAAACA 59.118 47.619 18.83 0.00 42.61 2.83
3228 3479 2.154462 TCAGCCTTTCAGCTAGCAAAC 58.846 47.619 18.83 0.00 42.61 2.93
3229 3480 2.566833 TCAGCCTTTCAGCTAGCAAA 57.433 45.000 18.83 8.75 42.61 3.68
3230 3481 2.554032 GTTTCAGCCTTTCAGCTAGCAA 59.446 45.455 18.83 0.00 42.61 3.91
3231 3482 2.154462 GTTTCAGCCTTTCAGCTAGCA 58.846 47.619 18.83 0.00 42.61 3.49
3232 3483 2.161211 CAGTTTCAGCCTTTCAGCTAGC 59.839 50.000 6.62 6.62 42.61 3.42
3233 3484 3.434984 GTCAGTTTCAGCCTTTCAGCTAG 59.565 47.826 0.00 0.00 42.61 3.42
3234 3485 3.181455 TGTCAGTTTCAGCCTTTCAGCTA 60.181 43.478 0.00 0.00 42.61 3.32
3235 3486 2.225467 GTCAGTTTCAGCCTTTCAGCT 58.775 47.619 0.00 0.00 46.45 4.24
3236 3487 1.949525 TGTCAGTTTCAGCCTTTCAGC 59.050 47.619 0.00 0.00 0.00 4.26
3237 3488 2.551459 CCTGTCAGTTTCAGCCTTTCAG 59.449 50.000 0.00 0.00 0.00 3.02
3238 3489 2.575532 CCTGTCAGTTTCAGCCTTTCA 58.424 47.619 0.00 0.00 0.00 2.69
3239 3490 1.268079 GCCTGTCAGTTTCAGCCTTTC 59.732 52.381 0.00 0.00 0.00 2.62
3240 3491 1.322442 GCCTGTCAGTTTCAGCCTTT 58.678 50.000 0.00 0.00 0.00 3.11
3241 3492 0.183492 TGCCTGTCAGTTTCAGCCTT 59.817 50.000 0.00 0.00 0.00 4.35
3242 3493 0.403271 ATGCCTGTCAGTTTCAGCCT 59.597 50.000 0.00 0.00 0.00 4.58
3243 3494 1.068055 CAATGCCTGTCAGTTTCAGCC 60.068 52.381 0.00 0.00 0.00 4.85
3244 3495 1.068055 CCAATGCCTGTCAGTTTCAGC 60.068 52.381 0.00 0.00 0.00 4.26
3245 3496 1.068055 GCCAATGCCTGTCAGTTTCAG 60.068 52.381 0.00 0.00 0.00 3.02
3246 3497 0.961019 GCCAATGCCTGTCAGTTTCA 59.039 50.000 0.00 0.00 0.00 2.69
3247 3498 1.251251 AGCCAATGCCTGTCAGTTTC 58.749 50.000 0.00 0.00 38.69 2.78
3248 3499 1.708341 AAGCCAATGCCTGTCAGTTT 58.292 45.000 0.00 0.00 38.69 2.66
3249 3500 1.342174 CAAAGCCAATGCCTGTCAGTT 59.658 47.619 0.00 0.00 38.69 3.16
3250 3501 0.963962 CAAAGCCAATGCCTGTCAGT 59.036 50.000 0.00 0.00 38.69 3.41
3251 3502 1.250328 TCAAAGCCAATGCCTGTCAG 58.750 50.000 0.00 0.00 38.69 3.51
3252 3503 1.340889 GTTCAAAGCCAATGCCTGTCA 59.659 47.619 0.00 0.00 38.69 3.58
3253 3504 1.340889 TGTTCAAAGCCAATGCCTGTC 59.659 47.619 0.00 0.00 38.69 3.51
3254 3505 1.412079 TGTTCAAAGCCAATGCCTGT 58.588 45.000 0.00 0.00 38.69 4.00
3255 3506 2.613691 GATGTTCAAAGCCAATGCCTG 58.386 47.619 0.00 0.00 38.69 4.85
3256 3507 1.551883 GGATGTTCAAAGCCAATGCCT 59.448 47.619 0.00 0.00 38.69 4.75
3257 3508 1.275856 TGGATGTTCAAAGCCAATGCC 59.724 47.619 0.00 0.00 38.69 4.40
3258 3509 2.340337 GTGGATGTTCAAAGCCAATGC 58.660 47.619 0.00 0.00 37.95 3.56
3259 3510 2.228582 TCGTGGATGTTCAAAGCCAATG 59.771 45.455 0.00 0.00 31.18 2.82
3260 3511 2.489329 CTCGTGGATGTTCAAAGCCAAT 59.511 45.455 0.00 0.00 31.18 3.16
3261 3512 1.879380 CTCGTGGATGTTCAAAGCCAA 59.121 47.619 0.00 0.00 31.18 4.52
3262 3513 1.071542 TCTCGTGGATGTTCAAAGCCA 59.928 47.619 0.00 0.00 0.00 4.75
3263 3514 1.464997 GTCTCGTGGATGTTCAAAGCC 59.535 52.381 0.00 0.00 0.00 4.35
3264 3515 1.126846 CGTCTCGTGGATGTTCAAAGC 59.873 52.381 0.00 0.00 0.00 3.51
3265 3516 2.404215 ACGTCTCGTGGATGTTCAAAG 58.596 47.619 0.00 0.00 40.95 2.77
3266 3517 2.519377 ACGTCTCGTGGATGTTCAAA 57.481 45.000 0.00 0.00 40.95 2.69
3284 3535 0.318784 ACGAAAGCCTCACGTCTCAC 60.319 55.000 0.00 0.00 35.33 3.51
3285 3536 0.318699 CACGAAAGCCTCACGTCTCA 60.319 55.000 0.00 0.00 38.18 3.27
3286 3537 1.618640 GCACGAAAGCCTCACGTCTC 61.619 60.000 0.00 0.00 38.18 3.36
3287 3538 1.664965 GCACGAAAGCCTCACGTCT 60.665 57.895 0.00 0.00 38.18 4.18
3288 3539 2.853914 GCACGAAAGCCTCACGTC 59.146 61.111 0.00 0.00 38.18 4.34
3289 3540 3.036084 CGCACGAAAGCCTCACGT 61.036 61.111 0.00 0.00 40.87 4.49
3290 3541 3.000080 GACGCACGAAAGCCTCACG 62.000 63.158 0.00 0.00 0.00 4.35
3291 3542 2.668280 GGACGCACGAAAGCCTCAC 61.668 63.158 0.00 0.00 0.00 3.51
3292 3543 2.357034 GGACGCACGAAAGCCTCA 60.357 61.111 0.00 0.00 0.00 3.86
3293 3544 3.119096 GGGACGCACGAAAGCCTC 61.119 66.667 0.00 0.00 0.00 4.70
3294 3545 2.951475 TTTGGGACGCACGAAAGCCT 62.951 55.000 0.00 0.00 0.00 4.58
3295 3546 1.862602 ATTTGGGACGCACGAAAGCC 61.863 55.000 0.00 0.00 0.00 4.35
3296 3547 0.800012 TATTTGGGACGCACGAAAGC 59.200 50.000 0.00 0.00 0.00 3.51
3297 3548 3.374058 AGAATATTTGGGACGCACGAAAG 59.626 43.478 0.00 0.00 0.00 2.62
3298 3549 3.340034 AGAATATTTGGGACGCACGAAA 58.660 40.909 0.00 0.00 0.00 3.46
3299 3550 2.980568 AGAATATTTGGGACGCACGAA 58.019 42.857 0.00 0.00 0.00 3.85
3300 3551 2.684001 AGAATATTTGGGACGCACGA 57.316 45.000 0.00 0.00 0.00 4.35
3301 3552 3.303132 GCTAAGAATATTTGGGACGCACG 60.303 47.826 0.00 0.00 0.00 5.34
3302 3553 3.625764 TGCTAAGAATATTTGGGACGCAC 59.374 43.478 0.00 0.00 0.00 5.34
3303 3554 3.879998 TGCTAAGAATATTTGGGACGCA 58.120 40.909 0.00 0.00 0.00 5.24
3304 3555 4.275936 ACATGCTAAGAATATTTGGGACGC 59.724 41.667 0.00 0.00 0.00 5.19
3305 3556 5.751680 CACATGCTAAGAATATTTGGGACG 58.248 41.667 0.00 0.00 0.00 4.79
3306 3557 5.067674 TGCACATGCTAAGAATATTTGGGAC 59.932 40.000 5.31 0.00 42.66 4.46
3307 3558 5.199723 TGCACATGCTAAGAATATTTGGGA 58.800 37.500 5.31 0.00 42.66 4.37
3308 3559 5.068198 ACTGCACATGCTAAGAATATTTGGG 59.932 40.000 5.31 0.00 42.66 4.12
3309 3560 5.975344 CACTGCACATGCTAAGAATATTTGG 59.025 40.000 5.31 0.00 42.66 3.28
3310 3561 5.975344 CCACTGCACATGCTAAGAATATTTG 59.025 40.000 5.31 0.00 42.66 2.32
3311 3562 5.450965 GCCACTGCACATGCTAAGAATATTT 60.451 40.000 5.31 0.00 42.66 1.40
3312 3563 4.037208 GCCACTGCACATGCTAAGAATATT 59.963 41.667 5.31 0.00 42.66 1.28
3313 3564 3.567164 GCCACTGCACATGCTAAGAATAT 59.433 43.478 5.31 0.00 42.66 1.28
3314 3565 2.945008 GCCACTGCACATGCTAAGAATA 59.055 45.455 5.31 0.00 42.66 1.75
3318 3569 1.805254 GGCCACTGCACATGCTAAG 59.195 57.895 0.00 0.00 42.66 2.18
3352 3603 1.005294 ACGTCACGTAATGGCACGAC 61.005 55.000 0.00 0.00 44.69 4.34
3442 3693 3.375922 ACTTGTTTCATTGACGTTCGGTT 59.624 39.130 0.00 0.00 0.00 4.44
3445 3696 6.343924 GCTTTAACTTGTTTCATTGACGTTCG 60.344 38.462 0.00 0.00 0.00 3.95
3463 3714 1.136057 GTACGTGCTGCTGGCTTTAAC 60.136 52.381 0.00 0.00 42.39 2.01
3470 3722 2.357396 TGCTGTACGTGCTGCTGG 60.357 61.111 29.26 6.86 34.93 4.85
3509 3761 3.628017 ACTTGCGATTCGTTTTTGGAAG 58.372 40.909 8.03 0.00 33.47 3.46
3510 3762 3.701532 ACTTGCGATTCGTTTTTGGAA 57.298 38.095 8.03 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.