Multiple sequence alignment - TraesCS2B01G178800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G178800 chr2B 100.000 6561 0 0 1 6561 153854100 153860660 0.000000e+00 12116.0
1 TraesCS2B01G178800 chr2B 94.853 408 19 2 3154 3561 557048347 557048752 2.580000e-178 636.0
2 TraesCS2B01G178800 chr2B 92.903 155 10 1 4124 4277 602996453 602996299 2.380000e-54 224.0
3 TraesCS2B01G178800 chr2D 97.101 2932 77 5 3008 5933 102590711 102593640 0.000000e+00 4937.0
4 TraesCS2B01G178800 chr2D 90.822 1569 58 15 689 2206 102587399 102588932 0.000000e+00 2021.0
5 TraesCS2B01G178800 chr2D 96.237 558 20 1 2452 3008 102589046 102589603 0.000000e+00 913.0
6 TraesCS2B01G178800 chr2D 94.173 532 15 2 5932 6462 102593742 102594258 0.000000e+00 797.0
7 TraesCS2B01G178800 chr2D 89.084 513 41 9 1 498 87728689 87729201 2.010000e-174 623.0
8 TraesCS2B01G178800 chr2D 92.208 154 12 0 4124 4277 512769344 512769191 1.110000e-52 219.0
9 TraesCS2B01G178800 chr2D 89.437 142 13 1 1588 1729 37569965 37570104 1.880000e-40 178.0
10 TraesCS2B01G178800 chr2D 86.792 159 16 4 1588 1744 549022586 549022431 8.750000e-39 172.0
11 TraesCS2B01G178800 chr2D 95.402 87 4 0 6475 6561 102619253 102619339 8.870000e-29 139.0
12 TraesCS2B01G178800 chr2D 98.684 76 1 0 2212 2287 102588979 102589054 1.150000e-27 135.0
13 TraesCS2B01G178800 chr2A 96.102 1719 54 8 4049 5758 101698197 101699911 0.000000e+00 2791.0
14 TraesCS2B01G178800 chr2A 95.887 1629 40 10 2452 4058 101696613 101698236 0.000000e+00 2612.0
15 TraesCS2B01G178800 chr2A 85.003 1607 97 50 689 2201 101694936 101696492 0.000000e+00 1500.0
16 TraesCS2B01G178800 chr2A 93.321 554 16 8 6008 6561 101726211 101726743 0.000000e+00 798.0
17 TraesCS2B01G178800 chr2A 95.076 264 12 1 5754 6016 101722022 101722285 1.320000e-111 414.0
18 TraesCS2B01G178800 chr2A 96.129 155 5 1 2298 2452 47763602 47763755 1.090000e-62 252.0
19 TraesCS2B01G178800 chr2A 96.129 155 5 1 2298 2452 185123176 185123329 1.090000e-62 252.0
20 TraesCS2B01G178800 chr2A 92.105 76 6 0 2212 2287 101696546 101696621 2.500000e-19 108.0
21 TraesCS2B01G178800 chrUn 96.569 408 13 1 3154 3561 131252653 131253059 0.000000e+00 675.0
22 TraesCS2B01G178800 chrUn 88.811 143 13 2 1588 1729 277522247 277522387 8.750000e-39 172.0
23 TraesCS2B01G178800 chrUn 88.194 144 12 4 1588 1729 42252786 42252926 4.070000e-37 167.0
24 TraesCS2B01G178800 chr3B 96.766 402 11 2 3160 3561 104502800 104502401 0.000000e+00 669.0
25 TraesCS2B01G178800 chr3B 85.972 499 55 9 2 487 13609335 13609831 2.710000e-143 520.0
26 TraesCS2B01G178800 chr4A 88.406 483 43 7 1 470 303108224 303108706 2.650000e-158 569.0
27 TraesCS2B01G178800 chr4A 87.992 483 45 7 1 470 303047194 303047676 5.750000e-155 558.0
28 TraesCS2B01G178800 chr4A 87.037 486 50 7 1 473 311575249 311574764 2.690000e-148 536.0
29 TraesCS2B01G178800 chr4A 96.104 154 5 1 2298 2451 245258073 245257921 3.930000e-62 250.0
30 TraesCS2B01G178800 chr3D 88.802 384 28 8 1 369 553471830 553471447 2.160000e-124 457.0
31 TraesCS2B01G178800 chr3D 88.732 142 14 1 1588 1729 81688020 81688159 8.750000e-39 172.0
32 TraesCS2B01G178800 chr6B 88.732 355 33 6 138 487 11247942 11247590 1.690000e-115 427.0
33 TraesCS2B01G178800 chr5B 94.545 165 9 0 2287 2451 672621477 672621313 8.440000e-64 255.0
34 TraesCS2B01G178800 chr5B 96.129 155 5 1 2298 2452 372109001 372108848 1.090000e-62 252.0
35 TraesCS2B01G178800 chr5B 91.824 159 12 1 4124 4281 288327809 288327651 3.080000e-53 220.0
36 TraesCS2B01G178800 chr5B 75.576 434 90 12 64 487 683398224 683397797 4.010000e-47 200.0
37 TraesCS2B01G178800 chr4B 94.545 165 9 0 2287 2451 200655959 200656123 8.440000e-64 255.0
38 TraesCS2B01G178800 chr3A 96.154 156 5 1 2298 2453 86719556 86719710 3.040000e-63 254.0
39 TraesCS2B01G178800 chr1A 93.529 170 10 1 2282 2451 23181601 23181769 1.090000e-62 252.0
40 TraesCS2B01G178800 chr1A 88.732 142 14 1 1588 1729 479867282 479867143 8.750000e-39 172.0
41 TraesCS2B01G178800 chr1D 92.353 170 12 1 2282 2451 21865904 21866072 2.360000e-59 241.0
42 TraesCS2B01G178800 chr5D 89.385 179 15 4 4100 4277 256749777 256749952 8.560000e-54 222.0
43 TraesCS2B01G178800 chr7B 89.474 171 15 3 4109 4277 700413761 700413930 5.150000e-51 213.0
44 TraesCS2B01G178800 chr7A 88.889 171 16 3 4109 4277 701301342 701301511 2.400000e-49 207.0
45 TraesCS2B01G178800 chr7A 89.510 143 11 3 1588 1729 82620876 82620737 1.880000e-40 178.0
46 TraesCS2B01G178800 chr5A 87.861 173 19 2 4105 4277 341688253 341688423 1.120000e-47 202.0
47 TraesCS2B01G178800 chr4D 89.583 144 10 4 1588 1729 363669999 363670139 1.880000e-40 178.0
48 TraesCS2B01G178800 chr6A 94.286 35 2 0 440 474 471882296 471882262 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G178800 chr2B 153854100 153860660 6560 False 12116.00 12116 100.00000 1 6561 1 chr2B.!!$F1 6560
1 TraesCS2B01G178800 chr2D 102587399 102594258 6859 False 1760.60 4937 95.40340 689 6462 5 chr2D.!!$F4 5773
2 TraesCS2B01G178800 chr2D 87728689 87729201 512 False 623.00 623 89.08400 1 498 1 chr2D.!!$F2 497
3 TraesCS2B01G178800 chr2A 101694936 101699911 4975 False 1752.75 2791 92.27425 689 5758 4 chr2A.!!$F3 5069
4 TraesCS2B01G178800 chr2A 101722022 101726743 4721 False 606.00 798 94.19850 5754 6561 2 chr2A.!!$F4 807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 534 0.035056 AACTTGGGCATTCCTCGAGG 60.035 55.000 26.32 26.32 36.20 4.63 F
2357 2523 0.168348 TCAGCTTAGTGTCGACTCGC 59.832 55.000 17.92 11.93 33.21 5.03 F
2401 2567 0.036858 AAGCAGGCTCGACTTCTTCC 60.037 55.000 0.00 0.00 0.00 3.46 F
2458 2624 0.313672 TCAAAAACCATGGCGAGCAC 59.686 50.000 13.04 0.00 0.00 4.40 F
2459 2625 0.667184 CAAAAACCATGGCGAGCACC 60.667 55.000 13.04 0.00 0.00 5.01 F
2833 3012 1.266989 CTCGGTTTGGCTTTTCCTGAC 59.733 52.381 0.00 0.00 35.26 3.51 F
4301 5590 1.466167 CTGCTGAGTGGTACATTGCAC 59.534 52.381 0.00 0.00 44.52 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2382 2548 0.036858 GGAAGAAGTCGAGCCTGCTT 60.037 55.000 0.00 0.0 32.75 3.91 R
4349 5638 3.244353 ACCATGAGTCTCTGACAAACCTG 60.244 47.826 0.65 0.0 34.60 4.00 R
4649 5941 3.410631 TTCTTCTGCGTACCATTTCCA 57.589 42.857 0.00 0.0 0.00 3.53 R
4836 6128 5.138125 ACAATCAATGTTCAACCATCCAC 57.862 39.130 0.00 0.0 40.06 4.02 R
4850 6142 5.069516 ACCAAAGAAGCTGACAACAATCAAT 59.930 36.000 0.00 0.0 0.00 2.57 R
4873 6165 1.067516 CCGATTGGAAATGATGCCCAC 59.932 52.381 0.00 0.0 37.49 4.61 R
6518 11855 0.250467 GTGAAGTGGCTCCAAGCTCA 60.250 55.000 0.00 0.0 41.99 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.250104 GCGTCTTTTTCAGATGATGATTTCAC 59.750 38.462 0.00 0.00 40.67 3.18
40 41 7.300320 CGTCTTTTTCAGATGATGATTTCACA 58.700 34.615 0.00 0.00 40.67 3.58
42 43 7.754027 GTCTTTTTCAGATGATGATTTCACAGG 59.246 37.037 0.00 0.00 37.89 4.00
43 44 7.666804 TCTTTTTCAGATGATGATTTCACAGGA 59.333 33.333 0.00 0.00 37.89 3.86
44 45 6.997239 TTTCAGATGATGATTTCACAGGAG 57.003 37.500 0.00 0.00 37.89 3.69
45 46 4.449131 TCAGATGATGATTTCACAGGAGC 58.551 43.478 0.00 0.00 37.11 4.70
46 47 4.080751 TCAGATGATGATTTCACAGGAGCA 60.081 41.667 0.00 0.00 37.11 4.26
47 48 4.035324 CAGATGATGATTTCACAGGAGCAC 59.965 45.833 0.00 0.00 37.11 4.40
48 49 3.421919 TGATGATTTCACAGGAGCACA 57.578 42.857 0.00 0.00 0.00 4.57
49 50 3.959293 TGATGATTTCACAGGAGCACAT 58.041 40.909 0.00 0.00 0.00 3.21
105 122 2.191354 TACGGCTCGACTTGACCACG 62.191 60.000 1.50 0.00 0.00 4.94
109 126 0.318784 GCTCGACTTGACCACGTTCT 60.319 55.000 0.00 0.00 0.00 3.01
111 128 1.001706 CTCGACTTGACCACGTTCTGA 60.002 52.381 0.00 0.00 0.00 3.27
130 147 1.880027 GAATGTGGTTTCAGCGGAAGT 59.120 47.619 0.00 0.00 33.82 3.01
185 202 3.878778 AGGTACTGGATGCAACAATCTC 58.121 45.455 0.00 0.00 37.18 2.75
193 210 4.469586 TGGATGCAACAATCTCCTAGTACA 59.530 41.667 3.57 0.00 0.00 2.90
255 272 2.370189 GAGGGATACTCAATGGTGGAGG 59.630 54.545 0.00 0.00 45.85 4.30
285 302 5.783111 TCATTCAAGATTGTCGAGAGTTGA 58.217 37.500 0.00 0.00 0.00 3.18
304 321 2.104170 GATGAGAGAGTTCGGGAAGGT 58.896 52.381 0.00 0.00 0.00 3.50
306 323 1.618837 TGAGAGAGTTCGGGAAGGTTG 59.381 52.381 0.00 0.00 0.00 3.77
308 325 2.037381 GAGAGAGTTCGGGAAGGTTGTT 59.963 50.000 0.00 0.00 0.00 2.83
339 356 9.890629 AACATTGTAATAGAGAGTCTAATTGCA 57.109 29.630 11.90 11.90 31.96 4.08
379 401 3.512724 TGGTAGTGCTAACAACCCTACTC 59.487 47.826 0.00 0.00 28.30 2.59
382 404 3.780626 AGTGCTAACAACCCTACTCTCT 58.219 45.455 0.00 0.00 0.00 3.10
383 405 3.511934 AGTGCTAACAACCCTACTCTCTG 59.488 47.826 0.00 0.00 0.00 3.35
384 406 2.832129 TGCTAACAACCCTACTCTCTGG 59.168 50.000 0.00 0.00 0.00 3.86
390 412 3.711849 CCCTACTCTCTGGGTGGAA 57.288 57.895 0.00 0.00 38.65 3.53
391 413 1.952621 CCCTACTCTCTGGGTGGAAA 58.047 55.000 0.00 0.00 38.65 3.13
392 414 1.555533 CCCTACTCTCTGGGTGGAAAC 59.444 57.143 0.00 0.00 38.65 2.78
393 415 2.257207 CCTACTCTCTGGGTGGAAACA 58.743 52.381 0.00 0.00 38.70 2.83
413 435 6.394025 AACACCGCCTGTTTTTCTATTAAA 57.606 33.333 0.00 0.00 40.45 1.52
414 436 6.009115 ACACCGCCTGTTTTTCTATTAAAG 57.991 37.500 0.00 0.00 0.00 1.85
415 437 5.048294 ACACCGCCTGTTTTTCTATTAAAGG 60.048 40.000 0.00 0.00 0.00 3.11
416 438 5.048294 CACCGCCTGTTTTTCTATTAAAGGT 60.048 40.000 0.00 0.00 0.00 3.50
417 439 5.537295 ACCGCCTGTTTTTCTATTAAAGGTT 59.463 36.000 0.00 0.00 0.00 3.50
418 440 6.041182 ACCGCCTGTTTTTCTATTAAAGGTTT 59.959 34.615 0.00 0.00 0.00 3.27
419 441 6.926826 CCGCCTGTTTTTCTATTAAAGGTTTT 59.073 34.615 0.00 0.00 0.00 2.43
420 442 8.083462 CCGCCTGTTTTTCTATTAAAGGTTTTA 58.917 33.333 0.00 0.00 0.00 1.52
421 443 9.124807 CGCCTGTTTTTCTATTAAAGGTTTTAG 57.875 33.333 0.00 0.00 0.00 1.85
422 444 8.922676 GCCTGTTTTTCTATTAAAGGTTTTAGC 58.077 33.333 0.00 0.00 0.00 3.09
423 445 9.124807 CCTGTTTTTCTATTAAAGGTTTTAGCG 57.875 33.333 0.00 0.00 0.00 4.26
424 446 9.887406 CTGTTTTTCTATTAAAGGTTTTAGCGA 57.113 29.630 0.00 0.00 0.00 4.93
431 453 9.391006 TCTATTAAAGGTTTTAGCGAATGATGT 57.609 29.630 0.00 0.00 0.00 3.06
435 457 5.485662 AGGTTTTAGCGAATGATGTAAGC 57.514 39.130 0.00 0.00 0.00 3.09
436 458 4.941263 AGGTTTTAGCGAATGATGTAAGCA 59.059 37.500 0.00 0.00 35.55 3.91
476 498 8.966069 ATAAAGCTAGTCATAAAGGTCTTTCC 57.034 34.615 0.00 0.00 34.23 3.13
477 499 5.012328 AGCTAGTCATAAAGGTCTTTCCG 57.988 43.478 0.00 0.00 41.99 4.30
478 500 4.466726 AGCTAGTCATAAAGGTCTTTCCGT 59.533 41.667 0.00 0.00 41.99 4.69
479 501 5.046520 AGCTAGTCATAAAGGTCTTTCCGTT 60.047 40.000 0.00 0.00 41.99 4.44
480 502 6.154021 AGCTAGTCATAAAGGTCTTTCCGTTA 59.846 38.462 0.00 0.00 42.44 3.18
481 503 6.815142 GCTAGTCATAAAGGTCTTTCCGTTAA 59.185 38.462 0.00 0.00 41.80 2.01
482 504 7.332678 GCTAGTCATAAAGGTCTTTCCGTTAAA 59.667 37.037 0.00 0.00 41.80 1.52
483 505 9.211485 CTAGTCATAAAGGTCTTTCCGTTAAAA 57.789 33.333 0.00 0.00 41.80 1.52
484 506 8.454570 AGTCATAAAGGTCTTTCCGTTAAAAA 57.545 30.769 0.00 0.00 41.80 1.94
506 528 6.875948 AAAACAATAAAACTTGGGCATTCC 57.124 33.333 0.00 0.00 0.00 3.01
507 529 5.823861 AACAATAAAACTTGGGCATTCCT 57.176 34.783 0.00 0.00 36.20 3.36
508 530 5.405935 ACAATAAAACTTGGGCATTCCTC 57.594 39.130 0.00 0.00 36.20 3.71
509 531 4.082245 ACAATAAAACTTGGGCATTCCTCG 60.082 41.667 0.00 0.00 36.20 4.63
510 532 2.286365 AAAACTTGGGCATTCCTCGA 57.714 45.000 0.00 0.00 36.20 4.04
511 533 1.826385 AAACTTGGGCATTCCTCGAG 58.174 50.000 5.13 5.13 36.20 4.04
512 534 0.035056 AACTTGGGCATTCCTCGAGG 60.035 55.000 26.32 26.32 36.20 4.63
513 535 1.821332 CTTGGGCATTCCTCGAGGC 60.821 63.158 27.39 14.59 36.20 4.70
514 536 2.541547 CTTGGGCATTCCTCGAGGCA 62.542 60.000 27.39 17.72 36.20 4.75
515 537 2.135903 TTGGGCATTCCTCGAGGCAA 62.136 55.000 27.39 19.64 36.20 4.52
516 538 2.115291 GGGCATTCCTCGAGGCAAC 61.115 63.158 27.39 14.93 34.44 4.17
517 539 1.377202 GGCATTCCTCGAGGCAACA 60.377 57.895 27.39 6.53 41.41 3.33
518 540 0.749454 GGCATTCCTCGAGGCAACAT 60.749 55.000 27.39 12.46 41.41 2.71
519 541 1.098050 GCATTCCTCGAGGCAACATT 58.902 50.000 27.39 2.98 41.41 2.71
520 542 1.064654 GCATTCCTCGAGGCAACATTC 59.935 52.381 27.39 6.62 41.41 2.67
521 543 2.358957 CATTCCTCGAGGCAACATTCA 58.641 47.619 27.39 3.56 41.41 2.57
522 544 2.559698 TTCCTCGAGGCAACATTCAA 57.440 45.000 27.39 10.23 41.41 2.69
523 545 2.559698 TCCTCGAGGCAACATTCAAA 57.440 45.000 27.39 1.89 41.41 2.69
524 546 2.857483 TCCTCGAGGCAACATTCAAAA 58.143 42.857 27.39 1.30 41.41 2.44
525 547 3.218453 TCCTCGAGGCAACATTCAAAAA 58.782 40.909 27.39 1.07 41.41 1.94
526 548 3.004315 TCCTCGAGGCAACATTCAAAAAC 59.996 43.478 27.39 0.00 41.41 2.43
527 549 3.308530 CTCGAGGCAACATTCAAAAACC 58.691 45.455 3.91 0.00 41.41 3.27
528 550 2.690497 TCGAGGCAACATTCAAAAACCA 59.310 40.909 0.00 0.00 41.41 3.67
529 551 3.131223 TCGAGGCAACATTCAAAAACCAA 59.869 39.130 0.00 0.00 41.41 3.67
530 552 3.245048 CGAGGCAACATTCAAAAACCAAC 59.755 43.478 0.00 0.00 41.41 3.77
531 553 4.187694 GAGGCAACATTCAAAAACCAACA 58.812 39.130 0.00 0.00 41.41 3.33
532 554 4.583871 AGGCAACATTCAAAAACCAACAA 58.416 34.783 0.00 0.00 41.41 2.83
533 555 4.635324 AGGCAACATTCAAAAACCAACAAG 59.365 37.500 0.00 0.00 41.41 3.16
534 556 4.633565 GGCAACATTCAAAAACCAACAAGA 59.366 37.500 0.00 0.00 0.00 3.02
535 557 5.123027 GGCAACATTCAAAAACCAACAAGAA 59.877 36.000 0.00 0.00 0.00 2.52
536 558 6.348868 GGCAACATTCAAAAACCAACAAGAAA 60.349 34.615 0.00 0.00 0.00 2.52
537 559 6.522855 GCAACATTCAAAAACCAACAAGAAAC 59.477 34.615 0.00 0.00 0.00 2.78
538 560 7.579726 CAACATTCAAAAACCAACAAGAAACA 58.420 30.769 0.00 0.00 0.00 2.83
539 561 7.127917 ACATTCAAAAACCAACAAGAAACAC 57.872 32.000 0.00 0.00 0.00 3.32
540 562 6.708054 ACATTCAAAAACCAACAAGAAACACA 59.292 30.769 0.00 0.00 0.00 3.72
541 563 6.532365 TTCAAAAACCAACAAGAAACACAC 57.468 33.333 0.00 0.00 0.00 3.82
542 564 5.601662 TCAAAAACCAACAAGAAACACACA 58.398 33.333 0.00 0.00 0.00 3.72
543 565 6.226787 TCAAAAACCAACAAGAAACACACAT 58.773 32.000 0.00 0.00 0.00 3.21
544 566 7.378966 TCAAAAACCAACAAGAAACACACATA 58.621 30.769 0.00 0.00 0.00 2.29
545 567 7.329717 TCAAAAACCAACAAGAAACACACATAC 59.670 33.333 0.00 0.00 0.00 2.39
546 568 6.524101 AAACCAACAAGAAACACACATACT 57.476 33.333 0.00 0.00 0.00 2.12
547 569 6.524101 AACCAACAAGAAACACACATACTT 57.476 33.333 0.00 0.00 0.00 2.24
548 570 5.890334 ACCAACAAGAAACACACATACTTG 58.110 37.500 0.00 0.00 42.11 3.16
550 572 5.971202 CCAACAAGAAACACACATACTTGTC 59.029 40.000 0.00 0.00 46.37 3.18
551 573 6.404184 CCAACAAGAAACACACATACTTGTCA 60.404 38.462 0.00 0.00 46.37 3.58
552 574 6.119144 ACAAGAAACACACATACTTGTCAC 57.881 37.500 0.00 0.00 44.75 3.67
553 575 5.645929 ACAAGAAACACACATACTTGTCACA 59.354 36.000 0.00 0.00 44.75 3.58
554 576 5.991328 AGAAACACACATACTTGTCACAG 57.009 39.130 0.00 0.00 32.34 3.66
555 577 5.670485 AGAAACACACATACTTGTCACAGA 58.330 37.500 0.00 0.00 32.34 3.41
556 578 5.755375 AGAAACACACATACTTGTCACAGAG 59.245 40.000 0.00 0.00 32.34 3.35
557 579 3.995199 ACACACATACTTGTCACAGAGG 58.005 45.455 0.00 0.00 32.34 3.69
558 580 3.388024 ACACACATACTTGTCACAGAGGT 59.612 43.478 0.00 0.00 32.34 3.85
559 581 3.990469 CACACATACTTGTCACAGAGGTC 59.010 47.826 0.00 0.00 32.34 3.85
560 582 3.006967 ACACATACTTGTCACAGAGGTCC 59.993 47.826 0.00 0.00 32.34 4.46
561 583 2.231478 ACATACTTGTCACAGAGGTCCG 59.769 50.000 0.00 0.00 0.00 4.79
562 584 0.601558 TACTTGTCACAGAGGTCCGC 59.398 55.000 0.00 0.00 0.00 5.54
563 585 1.374758 CTTGTCACAGAGGTCCGCC 60.375 63.158 0.00 0.00 0.00 6.13
564 586 2.099652 CTTGTCACAGAGGTCCGCCA 62.100 60.000 0.00 0.00 37.19 5.69
565 587 1.691195 TTGTCACAGAGGTCCGCCAA 61.691 55.000 0.00 0.00 37.19 4.52
566 588 1.070786 GTCACAGAGGTCCGCCAAA 59.929 57.895 0.00 0.00 37.19 3.28
567 589 1.070786 TCACAGAGGTCCGCCAAAC 59.929 57.895 0.00 0.00 37.19 2.93
568 590 1.071471 CACAGAGGTCCGCCAAACT 59.929 57.895 0.00 0.00 37.19 2.66
569 591 0.320374 CACAGAGGTCCGCCAAACTA 59.680 55.000 0.00 0.00 37.19 2.24
570 592 1.066143 CACAGAGGTCCGCCAAACTAT 60.066 52.381 0.00 0.00 37.19 2.12
571 593 1.207329 ACAGAGGTCCGCCAAACTATC 59.793 52.381 0.00 0.00 37.19 2.08
572 594 1.207089 CAGAGGTCCGCCAAACTATCA 59.793 52.381 0.00 0.00 37.19 2.15
573 595 1.906574 AGAGGTCCGCCAAACTATCAA 59.093 47.619 0.00 0.00 37.19 2.57
574 596 2.007608 GAGGTCCGCCAAACTATCAAC 58.992 52.381 0.00 0.00 37.19 3.18
575 597 1.349688 AGGTCCGCCAAACTATCAACA 59.650 47.619 0.00 0.00 37.19 3.33
576 598 2.026262 AGGTCCGCCAAACTATCAACAT 60.026 45.455 0.00 0.00 37.19 2.71
577 599 2.354821 GGTCCGCCAAACTATCAACATC 59.645 50.000 0.00 0.00 34.09 3.06
578 600 2.354821 GTCCGCCAAACTATCAACATCC 59.645 50.000 0.00 0.00 0.00 3.51
579 601 1.676006 CCGCCAAACTATCAACATCCC 59.324 52.381 0.00 0.00 0.00 3.85
580 602 2.643551 CGCCAAACTATCAACATCCCT 58.356 47.619 0.00 0.00 0.00 4.20
581 603 3.016736 CGCCAAACTATCAACATCCCTT 58.983 45.455 0.00 0.00 0.00 3.95
582 604 4.196193 CGCCAAACTATCAACATCCCTTA 58.804 43.478 0.00 0.00 0.00 2.69
583 605 4.273480 CGCCAAACTATCAACATCCCTTAG 59.727 45.833 0.00 0.00 0.00 2.18
584 606 4.580580 GCCAAACTATCAACATCCCTTAGG 59.419 45.833 0.00 0.00 0.00 2.69
599 621 6.442541 TCCCTTAGGACATGTCTAACAAAA 57.557 37.500 24.50 9.54 37.19 2.44
600 622 6.843752 TCCCTTAGGACATGTCTAACAAAAA 58.156 36.000 24.50 8.34 37.19 1.94
619 641 5.382618 AAAAATGCAACAAAACTTGGCAA 57.617 30.435 0.00 0.00 38.08 4.52
620 642 5.382618 AAAATGCAACAAAACTTGGCAAA 57.617 30.435 0.00 0.00 38.08 3.68
621 643 5.579564 AAATGCAACAAAACTTGGCAAAT 57.420 30.435 0.00 0.00 38.08 2.32
622 644 5.579564 AATGCAACAAAACTTGGCAAATT 57.420 30.435 0.00 0.00 38.08 1.82
623 645 5.579564 ATGCAACAAAACTTGGCAAATTT 57.420 30.435 0.04 0.04 38.08 1.82
624 646 6.690194 ATGCAACAAAACTTGGCAAATTTA 57.310 29.167 7.12 0.00 38.08 1.40
625 647 6.690194 TGCAACAAAACTTGGCAAATTTAT 57.310 29.167 7.12 0.00 34.12 1.40
626 648 7.093322 TGCAACAAAACTTGGCAAATTTATT 57.907 28.000 7.12 2.79 34.12 1.40
627 649 7.542025 TGCAACAAAACTTGGCAAATTTATTT 58.458 26.923 7.12 1.19 34.12 1.40
628 650 7.699812 TGCAACAAAACTTGGCAAATTTATTTC 59.300 29.630 7.12 1.28 34.12 2.17
629 651 7.699812 GCAACAAAACTTGGCAAATTTATTTCA 59.300 29.630 7.12 0.00 34.12 2.69
630 652 9.565213 CAACAAAACTTGGCAAATTTATTTCAA 57.435 25.926 7.12 0.00 34.12 2.69
631 653 9.786105 AACAAAACTTGGCAAATTTATTTCAAG 57.214 25.926 7.12 14.74 37.49 3.02
632 654 8.955388 ACAAAACTTGGCAAATTTATTTCAAGT 58.045 25.926 7.12 15.58 42.05 3.16
633 655 9.224058 CAAAACTTGGCAAATTTATTTCAAGTG 57.776 29.630 19.11 0.00 40.70 3.16
634 656 6.544038 ACTTGGCAAATTTATTTCAAGTGC 57.456 33.333 18.34 5.88 40.38 4.40
635 657 6.054295 ACTTGGCAAATTTATTTCAAGTGCA 58.946 32.000 18.34 0.00 40.38 4.57
636 658 6.711645 ACTTGGCAAATTTATTTCAAGTGCAT 59.288 30.769 18.34 3.73 40.38 3.96
637 659 6.724694 TGGCAAATTTATTTCAAGTGCATC 57.275 33.333 0.00 0.00 0.00 3.91
638 660 6.465948 TGGCAAATTTATTTCAAGTGCATCT 58.534 32.000 0.00 0.00 0.00 2.90
639 661 7.609960 TGGCAAATTTATTTCAAGTGCATCTA 58.390 30.769 0.00 0.00 0.00 1.98
640 662 8.093307 TGGCAAATTTATTTCAAGTGCATCTAA 58.907 29.630 0.00 0.00 0.00 2.10
641 663 8.934825 GGCAAATTTATTTCAAGTGCATCTAAA 58.065 29.630 0.00 0.00 0.00 1.85
648 670 5.845985 TTCAAGTGCATCTAAAAGAGTCG 57.154 39.130 0.00 0.00 0.00 4.18
649 671 4.883083 TCAAGTGCATCTAAAAGAGTCGT 58.117 39.130 0.00 0.00 0.00 4.34
650 672 5.297547 TCAAGTGCATCTAAAAGAGTCGTT 58.702 37.500 0.00 0.00 0.00 3.85
651 673 5.177511 TCAAGTGCATCTAAAAGAGTCGTTG 59.822 40.000 0.00 0.00 0.00 4.10
652 674 3.433615 AGTGCATCTAAAAGAGTCGTTGC 59.566 43.478 0.00 0.00 0.00 4.17
653 675 2.411748 TGCATCTAAAAGAGTCGTTGCG 59.588 45.455 0.00 0.00 0.00 4.85
654 676 2.784665 GCATCTAAAAGAGTCGTTGCGC 60.785 50.000 0.00 0.00 0.00 6.09
655 677 2.433868 TCTAAAAGAGTCGTTGCGCT 57.566 45.000 9.73 0.00 0.00 5.92
656 678 2.750948 TCTAAAAGAGTCGTTGCGCTT 58.249 42.857 9.73 0.00 0.00 4.68
657 679 2.729882 TCTAAAAGAGTCGTTGCGCTTC 59.270 45.455 9.73 0.00 0.00 3.86
658 680 1.583054 AAAAGAGTCGTTGCGCTTCT 58.417 45.000 9.73 0.00 0.00 2.85
659 681 1.140816 AAAGAGTCGTTGCGCTTCTC 58.859 50.000 9.73 9.11 0.00 2.87
660 682 0.667792 AAGAGTCGTTGCGCTTCTCC 60.668 55.000 9.73 0.00 0.00 3.71
661 683 1.372997 GAGTCGTTGCGCTTCTCCA 60.373 57.895 9.73 0.00 0.00 3.86
662 684 0.944311 GAGTCGTTGCGCTTCTCCAA 60.944 55.000 9.73 0.00 0.00 3.53
663 685 0.320771 AGTCGTTGCGCTTCTCCAAT 60.321 50.000 9.73 0.00 0.00 3.16
664 686 1.067142 AGTCGTTGCGCTTCTCCAATA 60.067 47.619 9.73 0.00 0.00 1.90
665 687 1.730064 GTCGTTGCGCTTCTCCAATAA 59.270 47.619 9.73 0.00 0.00 1.40
666 688 2.158841 GTCGTTGCGCTTCTCCAATAAA 59.841 45.455 9.73 0.00 0.00 1.40
667 689 2.809119 TCGTTGCGCTTCTCCAATAAAA 59.191 40.909 9.73 0.00 0.00 1.52
668 690 3.120338 TCGTTGCGCTTCTCCAATAAAAG 60.120 43.478 9.73 0.00 0.00 2.27
669 691 3.120338 CGTTGCGCTTCTCCAATAAAAGA 60.120 43.478 9.73 0.00 0.00 2.52
670 692 4.437390 CGTTGCGCTTCTCCAATAAAAGAT 60.437 41.667 9.73 0.00 0.00 2.40
671 693 5.220586 CGTTGCGCTTCTCCAATAAAAGATA 60.221 40.000 9.73 0.00 0.00 1.98
672 694 5.734855 TGCGCTTCTCCAATAAAAGATAC 57.265 39.130 9.73 0.00 0.00 2.24
673 695 5.182487 TGCGCTTCTCCAATAAAAGATACA 58.818 37.500 9.73 0.00 0.00 2.29
674 696 5.064707 TGCGCTTCTCCAATAAAAGATACAC 59.935 40.000 9.73 0.00 0.00 2.90
675 697 5.064707 GCGCTTCTCCAATAAAAGATACACA 59.935 40.000 0.00 0.00 0.00 3.72
676 698 6.478588 CGCTTCTCCAATAAAAGATACACAC 58.521 40.000 0.00 0.00 0.00 3.82
677 699 6.478588 GCTTCTCCAATAAAAGATACACACG 58.521 40.000 0.00 0.00 0.00 4.49
678 700 6.417191 TTCTCCAATAAAAGATACACACGC 57.583 37.500 0.00 0.00 0.00 5.34
679 701 5.730550 TCTCCAATAAAAGATACACACGCT 58.269 37.500 0.00 0.00 0.00 5.07
680 702 5.810587 TCTCCAATAAAAGATACACACGCTC 59.189 40.000 0.00 0.00 0.00 5.03
681 703 4.565166 TCCAATAAAAGATACACACGCTCG 59.435 41.667 0.00 0.00 0.00 5.03
682 704 4.263800 CAATAAAAGATACACACGCTCGC 58.736 43.478 0.00 0.00 0.00 5.03
683 705 1.790755 AAAAGATACACACGCTCGCA 58.209 45.000 0.00 0.00 0.00 5.10
684 706 1.068474 AAAGATACACACGCTCGCAC 58.932 50.000 0.00 0.00 0.00 5.34
685 707 1.071019 AAGATACACACGCTCGCACG 61.071 55.000 0.00 0.00 39.50 5.34
687 709 1.342082 GATACACACGCTCGCACGTT 61.342 55.000 0.00 0.00 45.75 3.99
853 882 4.258935 CGAATATCCGCCATAAAATCCG 57.741 45.455 0.00 0.00 0.00 4.18
923 968 4.012721 ACCGAGCCCCTCCCTTCT 62.013 66.667 0.00 0.00 0.00 2.85
930 975 3.787001 CCCTCCCTTCTCCCGTGC 61.787 72.222 0.00 0.00 0.00 5.34
932 977 2.685380 CTCCCTTCTCCCGTGCCT 60.685 66.667 0.00 0.00 0.00 4.75
952 997 1.609783 CTGCGGATCCCCTTTCCTT 59.390 57.895 6.06 0.00 0.00 3.36
965 1010 2.040947 CCTTTCCTTTGCCTTCTCTCCT 59.959 50.000 0.00 0.00 0.00 3.69
968 1013 0.987294 CCTTTGCCTTCTCTCCTCCA 59.013 55.000 0.00 0.00 0.00 3.86
1092 1137 2.102252 GAGCATCAACTGGGAGAGGTAG 59.898 54.545 0.00 0.00 33.17 3.18
1182 1262 3.497227 CCCAGTTCCTTCGGAAAAGGTAA 60.497 47.826 3.88 0.00 43.86 2.85
1183 1263 4.332828 CCAGTTCCTTCGGAAAAGGTAAT 58.667 43.478 3.88 0.00 43.86 1.89
1196 1276 6.458342 CGGAAAAGGTAATATCTTTGGCAGTC 60.458 42.308 0.00 0.00 34.99 3.51
1275 1355 2.907696 TGGGTTTAGTCTGGGAAATCGA 59.092 45.455 0.00 0.00 0.00 3.59
1371 1463 2.979676 CGCAGCCAGCTTGAACCA 60.980 61.111 0.00 0.00 42.61 3.67
1413 1506 2.218603 CCCACGCTGAAACTTAGTTGT 58.781 47.619 0.00 0.00 0.00 3.32
1455 1548 2.295909 CGGCTTCCACCAATTTCTGAAA 59.704 45.455 5.15 5.15 0.00 2.69
1494 1592 3.834231 ACAAATAGAAATGGGCTGCTTGT 59.166 39.130 0.00 0.00 0.00 3.16
1502 1600 1.108727 TGGGCTGCTTGTTCAACCTG 61.109 55.000 0.00 0.00 0.00 4.00
1769 1871 9.086336 AGTTATGTTTCAACTTTGAACAATGTG 57.914 29.630 3.84 3.22 45.99 3.21
1881 1983 8.499162 CAAGTATAATTGTTACTCTAGCCATGC 58.501 37.037 4.75 0.00 0.00 4.06
1888 1990 7.938140 TTGTTACTCTAGCCATGCTAATTTT 57.062 32.000 0.00 0.00 40.82 1.82
1933 2055 5.030936 GCGCATCAAAAAGAATAGAAGTCC 58.969 41.667 0.30 0.00 0.00 3.85
2045 2168 5.363580 CAGTGGCATACCCAGGAAAATTTAT 59.636 40.000 0.00 0.00 46.54 1.40
2149 2272 6.712241 ATACGCATATTAGCAGCAAGTAAG 57.288 37.500 0.00 0.00 0.00 2.34
2164 2287 4.201950 GCAAGTAAGCACTGATGTAATGGG 60.202 45.833 0.00 0.00 34.36 4.00
2170 2293 6.610075 AAGCACTGATGTAATGGGAAAAAT 57.390 33.333 0.00 0.00 0.00 1.82
2292 2458 3.506108 GCAGCGAGCACCATTGAT 58.494 55.556 0.00 0.00 44.79 2.57
2293 2459 1.805254 GCAGCGAGCACCATTGATT 59.195 52.632 0.00 0.00 44.79 2.57
2294 2460 0.171903 GCAGCGAGCACCATTGATTT 59.828 50.000 0.00 0.00 44.79 2.17
2295 2461 1.796617 GCAGCGAGCACCATTGATTTC 60.797 52.381 0.00 0.00 44.79 2.17
2296 2462 0.729116 AGCGAGCACCATTGATTTCG 59.271 50.000 0.00 0.00 0.00 3.46
2297 2463 0.726827 GCGAGCACCATTGATTTCGA 59.273 50.000 0.00 0.00 0.00 3.71
2298 2464 1.267732 GCGAGCACCATTGATTTCGAG 60.268 52.381 0.00 0.00 0.00 4.04
2299 2465 2.002586 CGAGCACCATTGATTTCGAGT 58.997 47.619 0.00 0.00 0.00 4.18
2300 2466 2.029728 CGAGCACCATTGATTTCGAGTC 59.970 50.000 0.00 0.00 0.00 3.36
2301 2467 2.002586 AGCACCATTGATTTCGAGTCG 58.997 47.619 6.09 6.09 0.00 4.18
2302 2468 1.529826 GCACCATTGATTTCGAGTCGC 60.530 52.381 7.92 0.00 0.00 5.19
2303 2469 2.002586 CACCATTGATTTCGAGTCGCT 58.997 47.619 7.92 0.00 0.00 4.93
2304 2470 2.029728 CACCATTGATTTCGAGTCGCTC 59.970 50.000 7.92 5.22 0.00 5.03
2318 2484 3.781341 GTCGCTCGACTAGTCTATGAG 57.219 52.381 20.34 18.61 41.57 2.90
2319 2485 3.125316 GTCGCTCGACTAGTCTATGAGT 58.875 50.000 20.34 0.00 41.57 3.41
2320 2486 3.182972 GTCGCTCGACTAGTCTATGAGTC 59.817 52.174 20.34 13.29 41.57 3.36
2330 2496 8.804688 GACTAGTCTATGAGTCGCAAAAATAT 57.195 34.615 15.91 0.00 33.27 1.28
2331 2497 8.581057 ACTAGTCTATGAGTCGCAAAAATATG 57.419 34.615 0.00 0.00 0.00 1.78
2332 2498 6.851222 AGTCTATGAGTCGCAAAAATATGG 57.149 37.500 0.00 0.00 0.00 2.74
2333 2499 6.349300 AGTCTATGAGTCGCAAAAATATGGT 58.651 36.000 0.00 0.00 0.00 3.55
2334 2500 6.480320 AGTCTATGAGTCGCAAAAATATGGTC 59.520 38.462 0.00 0.00 0.00 4.02
2335 2501 4.536364 ATGAGTCGCAAAAATATGGTCG 57.464 40.909 0.00 0.00 0.00 4.79
2336 2502 3.591023 TGAGTCGCAAAAATATGGTCGA 58.409 40.909 0.00 0.00 0.00 4.20
2337 2503 3.369756 TGAGTCGCAAAAATATGGTCGAC 59.630 43.478 7.13 7.13 44.36 4.20
2339 2505 3.924610 GTCGCAAAAATATGGTCGACTC 58.075 45.455 16.46 6.30 41.84 3.36
2340 2506 3.369756 GTCGCAAAAATATGGTCGACTCA 59.630 43.478 16.46 12.14 41.84 3.41
2341 2507 3.616821 TCGCAAAAATATGGTCGACTCAG 59.383 43.478 16.46 0.00 0.00 3.35
2342 2508 3.685058 GCAAAAATATGGTCGACTCAGC 58.315 45.455 16.46 6.06 0.00 4.26
2343 2509 3.375299 GCAAAAATATGGTCGACTCAGCT 59.625 43.478 16.46 0.87 0.00 4.24
2344 2510 4.142600 GCAAAAATATGGTCGACTCAGCTT 60.143 41.667 16.46 6.75 0.00 3.74
2345 2511 5.064707 GCAAAAATATGGTCGACTCAGCTTA 59.935 40.000 16.46 1.81 0.00 3.09
2346 2512 6.709643 CAAAAATATGGTCGACTCAGCTTAG 58.290 40.000 16.46 0.00 0.00 2.18
2347 2513 5.599999 AAATATGGTCGACTCAGCTTAGT 57.400 39.130 16.46 0.00 0.00 2.24
2348 2514 2.949451 ATGGTCGACTCAGCTTAGTG 57.051 50.000 16.46 0.00 0.00 2.74
2349 2515 1.617322 TGGTCGACTCAGCTTAGTGT 58.383 50.000 16.46 0.00 0.00 3.55
2350 2516 1.540267 TGGTCGACTCAGCTTAGTGTC 59.460 52.381 16.46 0.80 0.00 3.67
2355 2521 3.125698 GACTCAGCTTAGTGTCGACTC 57.874 52.381 17.92 13.63 33.21 3.36
2356 2522 1.465387 ACTCAGCTTAGTGTCGACTCG 59.535 52.381 17.92 1.95 33.21 4.18
2357 2523 0.168348 TCAGCTTAGTGTCGACTCGC 59.832 55.000 17.92 11.93 33.21 5.03
2358 2524 1.128724 CAGCTTAGTGTCGACTCGCG 61.129 60.000 17.92 0.00 42.69 5.87
2366 2532 3.475944 TCGACTCGCGACTCTGAG 58.524 61.111 3.71 2.45 45.59 3.35
2379 2545 3.592059 GACTCTGAGTCGTGACTAGTCT 58.408 50.000 23.01 2.71 42.66 3.24
2380 2546 3.592059 ACTCTGAGTCGTGACTAGTCTC 58.408 50.000 23.01 18.25 42.66 3.36
2381 2547 3.007074 ACTCTGAGTCGTGACTAGTCTCA 59.993 47.826 23.01 16.07 42.66 3.27
2382 2548 3.997681 CTCTGAGTCGTGACTAGTCTCAA 59.002 47.826 23.01 2.74 42.66 3.02
2383 2549 4.386711 TCTGAGTCGTGACTAGTCTCAAA 58.613 43.478 23.01 8.41 42.66 2.69
2384 2550 4.452795 TCTGAGTCGTGACTAGTCTCAAAG 59.547 45.833 23.01 11.93 42.66 2.77
2385 2551 3.058155 TGAGTCGTGACTAGTCTCAAAGC 60.058 47.826 23.01 10.21 42.66 3.51
2386 2552 2.885266 AGTCGTGACTAGTCTCAAAGCA 59.115 45.455 23.01 0.00 40.43 3.91
2387 2553 3.057876 AGTCGTGACTAGTCTCAAAGCAG 60.058 47.826 23.01 6.67 40.43 4.24
2388 2554 2.229062 TCGTGACTAGTCTCAAAGCAGG 59.771 50.000 23.01 7.94 0.00 4.85
2389 2555 2.342179 GTGACTAGTCTCAAAGCAGGC 58.658 52.381 23.01 0.00 0.00 4.85
2390 2556 2.028567 GTGACTAGTCTCAAAGCAGGCT 60.029 50.000 23.01 0.00 31.59 4.58
2391 2557 2.232452 TGACTAGTCTCAAAGCAGGCTC 59.768 50.000 23.01 0.00 28.82 4.70
2392 2558 1.203523 ACTAGTCTCAAAGCAGGCTCG 59.796 52.381 0.00 0.00 28.82 5.03
2393 2559 1.474478 CTAGTCTCAAAGCAGGCTCGA 59.526 52.381 0.00 0.00 28.82 4.04
2394 2560 0.037790 AGTCTCAAAGCAGGCTCGAC 60.038 55.000 0.00 0.13 0.00 4.20
2395 2561 0.037790 GTCTCAAAGCAGGCTCGACT 60.038 55.000 0.00 0.00 0.00 4.18
2396 2562 0.681733 TCTCAAAGCAGGCTCGACTT 59.318 50.000 0.00 0.00 0.00 3.01
2397 2563 1.074752 CTCAAAGCAGGCTCGACTTC 58.925 55.000 0.00 0.00 0.00 3.01
2398 2564 0.681733 TCAAAGCAGGCTCGACTTCT 59.318 50.000 0.00 0.00 0.00 2.85
2399 2565 1.070758 TCAAAGCAGGCTCGACTTCTT 59.929 47.619 0.00 0.00 0.00 2.52
2400 2566 1.462670 CAAAGCAGGCTCGACTTCTTC 59.537 52.381 0.00 0.00 0.00 2.87
2401 2567 0.036858 AAGCAGGCTCGACTTCTTCC 60.037 55.000 0.00 0.00 0.00 3.46
2402 2568 1.807573 GCAGGCTCGACTTCTTCCG 60.808 63.158 0.00 0.00 0.00 4.30
2403 2569 1.883732 CAGGCTCGACTTCTTCCGA 59.116 57.895 0.00 0.00 0.00 4.55
2410 2576 3.022981 GACTTCTTCCGAGTCGCTG 57.977 57.895 7.12 0.00 34.76 5.18
2411 2577 1.073768 GACTTCTTCCGAGTCGCTGC 61.074 60.000 7.12 0.00 34.76 5.25
2412 2578 1.807573 CTTCTTCCGAGTCGCTGCC 60.808 63.158 7.12 0.00 0.00 4.85
2413 2579 3.296709 TTCTTCCGAGTCGCTGCCC 62.297 63.158 7.12 0.00 0.00 5.36
2414 2580 4.821589 CTTCCGAGTCGCTGCCCC 62.822 72.222 7.12 0.00 0.00 5.80
2418 2584 4.504916 CGAGTCGCTGCCCCAGAG 62.505 72.222 0.00 0.00 32.44 3.35
2419 2585 4.828925 GAGTCGCTGCCCCAGAGC 62.829 72.222 0.00 0.00 32.44 4.09
2424 2590 4.400961 GCTGCCCCAGAGCGACTT 62.401 66.667 0.00 0.00 32.44 3.01
2425 2591 2.435586 CTGCCCCAGAGCGACTTG 60.436 66.667 0.00 0.00 32.44 3.16
2426 2592 4.704833 TGCCCCAGAGCGACTTGC 62.705 66.667 0.00 0.00 46.98 4.01
2437 2603 4.169102 GACTTGCATGAGTCGCGA 57.831 55.556 3.71 3.71 36.97 5.87
2438 2604 1.704582 GACTTGCATGAGTCGCGAC 59.295 57.895 31.30 31.30 36.97 5.19
2439 2605 0.734253 GACTTGCATGAGTCGCGACT 60.734 55.000 39.89 39.89 45.84 4.18
2448 2614 3.372795 AGTCGCGACTCAAAAACCA 57.627 47.368 34.98 0.00 36.92 3.67
2449 2615 1.878953 AGTCGCGACTCAAAAACCAT 58.121 45.000 34.98 10.31 36.92 3.55
2450 2616 1.531149 AGTCGCGACTCAAAAACCATG 59.469 47.619 34.98 0.00 36.92 3.66
2451 2617 0.871722 TCGCGACTCAAAAACCATGG 59.128 50.000 11.19 11.19 0.00 3.66
2452 2618 0.729140 CGCGACTCAAAAACCATGGC 60.729 55.000 13.04 0.00 0.00 4.40
2453 2619 0.729140 GCGACTCAAAAACCATGGCG 60.729 55.000 13.04 4.86 0.00 5.69
2454 2620 0.871722 CGACTCAAAAACCATGGCGA 59.128 50.000 13.04 0.00 0.00 5.54
2455 2621 1.135972 CGACTCAAAAACCATGGCGAG 60.136 52.381 13.04 12.31 0.00 5.03
2456 2622 0.598065 ACTCAAAAACCATGGCGAGC 59.402 50.000 13.04 0.00 0.00 5.03
2457 2623 0.597568 CTCAAAAACCATGGCGAGCA 59.402 50.000 13.04 0.00 0.00 4.26
2458 2624 0.313672 TCAAAAACCATGGCGAGCAC 59.686 50.000 13.04 0.00 0.00 4.40
2459 2625 0.667184 CAAAAACCATGGCGAGCACC 60.667 55.000 13.04 0.00 0.00 5.01
2533 2699 4.497984 TGTGTGGGTGGCTTGCGT 62.498 61.111 0.00 0.00 0.00 5.24
2623 2789 3.003480 GTGTGGACATGAGGCTAACTTC 58.997 50.000 0.00 0.00 0.00 3.01
2716 2882 2.659428 GGTTGGGCTGAGCATCTAATT 58.341 47.619 6.82 0.00 34.92 1.40
2820 2999 2.162681 CCAGAAATTCAGGCTCGGTTT 58.837 47.619 0.00 0.00 0.00 3.27
2833 3012 1.266989 CTCGGTTTGGCTTTTCCTGAC 59.733 52.381 0.00 0.00 35.26 3.51
2863 3042 2.287644 GGCTTGGTTTTGAAATGTGCAC 59.712 45.455 10.75 10.75 0.00 4.57
2917 3096 1.961394 GGGTTGGGGAACAGAAACTTC 59.039 52.381 0.00 0.00 0.00 3.01
2995 3174 5.683876 AACCTTCTTCTCAAGCTGCTATA 57.316 39.130 0.90 0.00 0.00 1.31
3111 4398 7.862274 ATCAGATGTCATAAGGAACTGGATA 57.138 36.000 0.00 0.00 40.86 2.59
3138 4425 4.323485 CCTCTGTGGTAAGGTAGCAAATCA 60.323 45.833 0.00 0.00 37.99 2.57
3186 4473 7.772332 AAATCGTAGATTGTAGAATCACACC 57.228 36.000 14.46 0.00 45.12 4.16
3851 5138 6.691754 ATTTTTGCCTTTGGTTCGAAAAAT 57.308 29.167 0.00 0.00 31.42 1.82
4037 5324 8.429237 AAGGGATTATGGTATGAAAAACAACA 57.571 30.769 0.00 0.00 0.00 3.33
4235 5524 6.127980 ACGTGTCTATATACATCCGATTCAGG 60.128 42.308 7.85 0.00 0.00 3.86
4236 5525 6.565234 GTGTCTATATACATCCGATTCAGGG 58.435 44.000 0.00 0.00 0.00 4.45
4246 5535 3.031736 TCCGATTCAGGGAGAAGTTAGG 58.968 50.000 0.00 0.00 40.15 2.69
4301 5590 1.466167 CTGCTGAGTGGTACATTGCAC 59.534 52.381 0.00 0.00 44.52 4.57
4349 5638 3.638484 ACCTTTTTGTATTTGTGCTCGC 58.362 40.909 0.00 0.00 0.00 5.03
4626 5918 8.299570 CCCACATCTTATTTATATTCCTGCAAC 58.700 37.037 0.00 0.00 0.00 4.17
4873 6165 4.572985 TGATTGTTGTCAGCTTCTTTGG 57.427 40.909 0.00 0.00 0.00 3.28
4881 6173 0.529378 CAGCTTCTTTGGTGGGCATC 59.471 55.000 0.00 0.00 0.00 3.91
4883 6175 1.188863 GCTTCTTTGGTGGGCATCAT 58.811 50.000 0.00 0.00 0.00 2.45
4955 6247 6.549736 GTGGCCTTTTTATACCATGTTAGGAT 59.450 38.462 3.32 0.00 34.04 3.24
5034 6330 7.815549 ACCCCTACAGCGTTTTTAAAAATAATG 59.184 33.333 16.02 15.41 0.00 1.90
5115 6411 5.200483 TCTTGAACAGTCCTCATTTTGGTT 58.800 37.500 0.00 0.00 0.00 3.67
5119 6415 4.447138 ACAGTCCTCATTTTGGTTGGTA 57.553 40.909 0.00 0.00 0.00 3.25
5202 6498 5.372343 TGGGACATGTTATCACAGCTTAT 57.628 39.130 0.00 0.00 35.94 1.73
5247 6543 6.085555 AGTCACGACAGATTTTAGTCAGAA 57.914 37.500 0.00 0.00 34.48 3.02
5257 6553 7.671398 ACAGATTTTAGTCAGAATTCCATTGGT 59.329 33.333 0.65 0.00 0.00 3.67
5317 6613 0.974383 CAACTACGGGAGTGGAAGGT 59.026 55.000 0.00 0.00 45.05 3.50
5361 6657 1.203523 CTGCTACTGCGAGAAGAAGGT 59.796 52.381 0.00 0.00 43.34 3.50
5439 6735 6.716628 GGGGTACATCAATGATTGTCACATAT 59.283 38.462 4.93 0.00 0.00 1.78
5482 6778 6.095860 CAGTTCTTGAAATTATCATCCCTGCA 59.904 38.462 0.00 0.00 38.03 4.41
5554 6850 6.054035 GAAAGACTTTCTGTGAAACCTGAG 57.946 41.667 18.80 0.00 36.73 3.35
5561 6857 3.819368 TCTGTGAAACCTGAGCAATGAA 58.181 40.909 0.00 0.00 34.36 2.57
5565 6861 3.319122 GTGAAACCTGAGCAATGAACCTT 59.681 43.478 0.00 0.00 0.00 3.50
5580 6876 0.890996 ACCTTTTGGCTTCTGCTCCG 60.891 55.000 0.00 0.00 45.59 4.63
5652 6948 2.041620 ACAGGGATTGGCATGTAACACT 59.958 45.455 0.00 0.00 0.00 3.55
5896 7195 2.357637 GCACCTTGTAGTTGTTCAGCAA 59.642 45.455 0.00 0.00 34.16 3.91
5967 7370 7.931407 AGTTACCCCACTTGAATTTTCAATTTC 59.069 33.333 6.21 0.00 45.26 2.17
6068 11405 3.246226 GCTGCAATGTATACCTTGTCGAG 59.754 47.826 18.43 13.70 0.00 4.04
6314 11651 6.403636 GCGAAAGAAAGTGACACATATTCCAT 60.404 38.462 8.59 1.89 0.00 3.41
6424 11761 4.334759 AGCACAAGATCTCATTGCACATAC 59.665 41.667 19.70 0.00 35.57 2.39
6462 11799 6.530019 TCTCATAGTGCATAAGACTTGTCA 57.470 37.500 0.00 0.00 0.00 3.58
6463 11800 6.567959 TCTCATAGTGCATAAGACTTGTCAG 58.432 40.000 0.00 0.00 0.00 3.51
6464 11801 6.153510 TCTCATAGTGCATAAGACTTGTCAGT 59.846 38.462 0.00 0.00 35.17 3.41
6465 11802 7.339466 TCTCATAGTGCATAAGACTTGTCAGTA 59.661 37.037 0.00 1.37 31.22 2.74
6466 11803 8.011844 TCATAGTGCATAAGACTTGTCAGTAT 57.988 34.615 0.00 3.48 31.22 2.12
6467 11804 9.131791 TCATAGTGCATAAGACTTGTCAGTATA 57.868 33.333 0.00 0.00 31.22 1.47
6468 11805 9.920133 CATAGTGCATAAGACTTGTCAGTATAT 57.080 33.333 0.00 0.00 31.22 0.86
6472 11809 9.914131 GTGCATAAGACTTGTCAGTATATATCA 57.086 33.333 0.00 0.00 31.22 2.15
6518 11855 6.976934 AGTTATTGTTGTCCATCCAAAACT 57.023 33.333 0.00 0.00 0.00 2.66
6538 11875 0.036022 GAGCTTGGAGCCACTTCACT 59.964 55.000 0.00 0.00 43.77 3.41
6549 11886 5.241728 GGAGCCACTTCACTGTATTCTTTTT 59.758 40.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.885230 TCATCATCTGAAAAAGACGCATT 57.115 34.783 0.00 0.00 37.88 3.56
19 20 7.576287 GCTCCTGTGAAATCATCATCTGAAAAA 60.576 37.037 0.00 0.00 40.97 1.94
39 40 0.803117 CACAAGCTCATGTGCTCCTG 59.197 55.000 21.65 18.60 43.67 3.86
40 41 3.244764 CACAAGCTCATGTGCTCCT 57.755 52.632 21.65 5.47 43.67 3.69
46 47 0.392706 TCGACACCACAAGCTCATGT 59.607 50.000 0.00 0.00 0.00 3.21
47 48 1.073964 CTCGACACCACAAGCTCATG 58.926 55.000 0.00 0.00 0.00 3.07
48 49 0.036952 CCTCGACACCACAAGCTCAT 60.037 55.000 0.00 0.00 0.00 2.90
49 50 1.112916 TCCTCGACACCACAAGCTCA 61.113 55.000 0.00 0.00 0.00 4.26
60 61 2.690497 CTCTGATAAAGCCTCCTCGACA 59.310 50.000 0.00 0.00 0.00 4.35
109 126 1.879380 CTTCCGCTGAAACCACATTCA 59.121 47.619 0.00 0.00 37.70 2.57
111 128 1.608590 CACTTCCGCTGAAACCACATT 59.391 47.619 0.00 0.00 0.00 2.71
146 163 4.047627 ACCTTGTGCTAATTTAAGCCCT 57.952 40.909 0.00 0.00 42.05 5.19
185 202 9.249053 ACTATCAGATTGTCCATATGTACTAGG 57.751 37.037 1.24 0.00 0.00 3.02
193 210 5.846164 TCCACCACTATCAGATTGTCCATAT 59.154 40.000 0.00 0.00 0.00 1.78
236 253 1.202818 GCCTCCACCATTGAGTATCCC 60.203 57.143 0.00 0.00 0.00 3.85
253 270 3.464833 ACAATCTTGAATGATAGGGGCCT 59.535 43.478 0.84 0.00 0.00 5.19
255 272 3.499918 CGACAATCTTGAATGATAGGGGC 59.500 47.826 0.00 0.00 0.00 5.80
285 302 2.234908 CAACCTTCCCGAACTCTCTCAT 59.765 50.000 0.00 0.00 0.00 2.90
358 380 3.768215 AGAGTAGGGTTGTTAGCACTACC 59.232 47.826 2.11 0.04 45.35 3.18
359 381 4.705991 AGAGAGTAGGGTTGTTAGCACTAC 59.294 45.833 0.00 0.00 35.45 2.73
391 413 5.048294 CCTTTAATAGAAAAACAGGCGGTGT 60.048 40.000 0.00 0.00 43.24 4.16
392 414 5.048294 ACCTTTAATAGAAAAACAGGCGGTG 60.048 40.000 0.00 0.00 0.00 4.94
393 415 5.074804 ACCTTTAATAGAAAAACAGGCGGT 58.925 37.500 0.00 0.00 0.00 5.68
394 416 5.638596 ACCTTTAATAGAAAAACAGGCGG 57.361 39.130 0.00 0.00 0.00 6.13
395 417 7.940178 AAAACCTTTAATAGAAAAACAGGCG 57.060 32.000 0.00 0.00 0.00 5.52
396 418 8.922676 GCTAAAACCTTTAATAGAAAAACAGGC 58.077 33.333 0.00 0.00 0.00 4.85
397 419 9.124807 CGCTAAAACCTTTAATAGAAAAACAGG 57.875 33.333 0.00 0.00 0.00 4.00
398 420 9.887406 TCGCTAAAACCTTTAATAGAAAAACAG 57.113 29.630 0.00 0.00 0.00 3.16
405 427 9.391006 ACATCATTCGCTAAAACCTTTAATAGA 57.609 29.630 0.00 0.00 0.00 1.98
409 431 7.966204 GCTTACATCATTCGCTAAAACCTTTAA 59.034 33.333 0.00 0.00 0.00 1.52
410 432 7.119992 TGCTTACATCATTCGCTAAAACCTTTA 59.880 33.333 0.00 0.00 0.00 1.85
411 433 6.072175 TGCTTACATCATTCGCTAAAACCTTT 60.072 34.615 0.00 0.00 0.00 3.11
412 434 5.414454 TGCTTACATCATTCGCTAAAACCTT 59.586 36.000 0.00 0.00 0.00 3.50
413 435 4.941263 TGCTTACATCATTCGCTAAAACCT 59.059 37.500 0.00 0.00 0.00 3.50
414 436 5.229921 TGCTTACATCATTCGCTAAAACC 57.770 39.130 0.00 0.00 0.00 3.27
415 437 9.450807 AATAATGCTTACATCATTCGCTAAAAC 57.549 29.630 0.00 0.00 34.62 2.43
450 472 9.397280 GGAAAGACCTTTATGACTAGCTTTATT 57.603 33.333 0.00 0.00 35.41 1.40
451 473 7.711339 CGGAAAGACCTTTATGACTAGCTTTAT 59.289 37.037 0.00 0.00 36.31 1.40
452 474 7.039882 CGGAAAGACCTTTATGACTAGCTTTA 58.960 38.462 0.00 0.00 36.31 1.85
453 475 5.875359 CGGAAAGACCTTTATGACTAGCTTT 59.125 40.000 0.00 0.00 36.31 3.51
454 476 5.046520 ACGGAAAGACCTTTATGACTAGCTT 60.047 40.000 0.00 0.00 36.31 3.74
455 477 4.466726 ACGGAAAGACCTTTATGACTAGCT 59.533 41.667 0.00 0.00 36.31 3.32
456 478 4.756502 ACGGAAAGACCTTTATGACTAGC 58.243 43.478 0.00 0.00 36.31 3.42
457 479 8.767478 TTTAACGGAAAGACCTTTATGACTAG 57.233 34.615 0.00 0.00 33.43 2.57
458 480 9.558396 TTTTTAACGGAAAGACCTTTATGACTA 57.442 29.630 0.00 0.00 33.43 2.59
459 481 8.454570 TTTTTAACGGAAAGACCTTTATGACT 57.545 30.769 0.00 0.00 33.43 3.41
482 504 7.059788 AGGAATGCCCAAGTTTTATTGTTTTT 58.940 30.769 0.00 0.00 37.41 1.94
483 505 6.600388 AGGAATGCCCAAGTTTTATTGTTTT 58.400 32.000 0.00 0.00 37.41 2.43
484 506 6.186420 AGGAATGCCCAAGTTTTATTGTTT 57.814 33.333 0.00 0.00 37.41 2.83
485 507 5.566627 CGAGGAATGCCCAAGTTTTATTGTT 60.567 40.000 0.00 0.00 37.41 2.83
486 508 4.082245 CGAGGAATGCCCAAGTTTTATTGT 60.082 41.667 0.00 0.00 37.41 2.71
487 509 4.157656 TCGAGGAATGCCCAAGTTTTATTG 59.842 41.667 0.00 0.00 37.41 1.90
488 510 4.340617 TCGAGGAATGCCCAAGTTTTATT 58.659 39.130 0.00 0.00 37.41 1.40
489 511 3.947834 CTCGAGGAATGCCCAAGTTTTAT 59.052 43.478 3.91 0.00 37.41 1.40
490 512 3.343617 CTCGAGGAATGCCCAAGTTTTA 58.656 45.455 3.91 0.00 37.41 1.52
491 513 2.162681 CTCGAGGAATGCCCAAGTTTT 58.837 47.619 3.91 0.00 37.41 2.43
492 514 1.614317 CCTCGAGGAATGCCCAAGTTT 60.614 52.381 28.21 0.00 37.39 2.66
493 515 0.035056 CCTCGAGGAATGCCCAAGTT 60.035 55.000 28.21 0.00 37.39 2.66
494 516 1.604378 CCTCGAGGAATGCCCAAGT 59.396 57.895 28.21 0.00 37.39 3.16
495 517 1.821332 GCCTCGAGGAATGCCCAAG 60.821 63.158 35.69 4.55 37.39 3.61
496 518 2.135903 TTGCCTCGAGGAATGCCCAA 62.136 55.000 35.69 23.40 37.39 4.12
497 519 2.601702 TTGCCTCGAGGAATGCCCA 61.602 57.895 35.69 18.85 37.39 5.36
498 520 2.115291 GTTGCCTCGAGGAATGCCC 61.115 63.158 35.69 16.30 37.39 5.36
499 521 0.749454 ATGTTGCCTCGAGGAATGCC 60.749 55.000 35.69 17.06 37.39 4.40
500 522 1.064654 GAATGTTGCCTCGAGGAATGC 59.935 52.381 35.69 20.21 37.39 3.56
501 523 2.358957 TGAATGTTGCCTCGAGGAATG 58.641 47.619 35.69 8.99 37.39 2.67
502 524 2.787473 TGAATGTTGCCTCGAGGAAT 57.213 45.000 35.69 18.17 37.39 3.01
503 525 2.559698 TTGAATGTTGCCTCGAGGAA 57.440 45.000 35.69 24.14 37.39 3.36
504 526 2.559698 TTTGAATGTTGCCTCGAGGA 57.440 45.000 35.69 17.11 37.39 3.71
505 527 3.308530 GTTTTTGAATGTTGCCTCGAGG 58.691 45.455 27.83 27.83 38.53 4.63
506 528 3.243367 TGGTTTTTGAATGTTGCCTCGAG 60.243 43.478 5.13 5.13 0.00 4.04
507 529 2.690497 TGGTTTTTGAATGTTGCCTCGA 59.310 40.909 0.00 0.00 0.00 4.04
508 530 3.090952 TGGTTTTTGAATGTTGCCTCG 57.909 42.857 0.00 0.00 0.00 4.63
509 531 4.187694 TGTTGGTTTTTGAATGTTGCCTC 58.812 39.130 0.00 0.00 0.00 4.70
510 532 4.213564 TGTTGGTTTTTGAATGTTGCCT 57.786 36.364 0.00 0.00 0.00 4.75
511 533 4.633565 TCTTGTTGGTTTTTGAATGTTGCC 59.366 37.500 0.00 0.00 0.00 4.52
512 534 5.793026 TCTTGTTGGTTTTTGAATGTTGC 57.207 34.783 0.00 0.00 0.00 4.17
513 535 7.533561 GTGTTTCTTGTTGGTTTTTGAATGTTG 59.466 33.333 0.00 0.00 0.00 3.33
514 536 7.227512 TGTGTTTCTTGTTGGTTTTTGAATGTT 59.772 29.630 0.00 0.00 0.00 2.71
515 537 6.708054 TGTGTTTCTTGTTGGTTTTTGAATGT 59.292 30.769 0.00 0.00 0.00 2.71
516 538 7.014702 GTGTGTTTCTTGTTGGTTTTTGAATG 58.985 34.615 0.00 0.00 0.00 2.67
517 539 6.708054 TGTGTGTTTCTTGTTGGTTTTTGAAT 59.292 30.769 0.00 0.00 0.00 2.57
518 540 6.049149 TGTGTGTTTCTTGTTGGTTTTTGAA 58.951 32.000 0.00 0.00 0.00 2.69
519 541 5.601662 TGTGTGTTTCTTGTTGGTTTTTGA 58.398 33.333 0.00 0.00 0.00 2.69
520 542 5.914085 TGTGTGTTTCTTGTTGGTTTTTG 57.086 34.783 0.00 0.00 0.00 2.44
521 543 7.382898 AGTATGTGTGTTTCTTGTTGGTTTTT 58.617 30.769 0.00 0.00 0.00 1.94
522 544 6.930731 AGTATGTGTGTTTCTTGTTGGTTTT 58.069 32.000 0.00 0.00 0.00 2.43
523 545 6.524101 AGTATGTGTGTTTCTTGTTGGTTT 57.476 33.333 0.00 0.00 0.00 3.27
524 546 6.071616 ACAAGTATGTGTGTTTCTTGTTGGTT 60.072 34.615 0.00 0.00 43.68 3.67
525 547 5.417580 ACAAGTATGTGTGTTTCTTGTTGGT 59.582 36.000 0.00 0.00 43.68 3.67
526 548 5.890334 ACAAGTATGTGTGTTTCTTGTTGG 58.110 37.500 0.00 0.00 43.68 3.77
527 549 6.468956 GTGACAAGTATGTGTGTTTCTTGTTG 59.531 38.462 9.60 0.00 45.30 3.33
528 550 6.150307 TGTGACAAGTATGTGTGTTTCTTGTT 59.850 34.615 9.60 0.00 45.30 2.83
530 552 6.037062 TCTGTGACAAGTATGTGTGTTTCTTG 59.963 38.462 0.00 0.00 40.74 3.02
531 553 6.112734 TCTGTGACAAGTATGTGTGTTTCTT 58.887 36.000 0.00 0.00 40.74 2.52
532 554 5.670485 TCTGTGACAAGTATGTGTGTTTCT 58.330 37.500 0.00 0.00 40.74 2.52
533 555 5.050091 CCTCTGTGACAAGTATGTGTGTTTC 60.050 44.000 0.00 0.00 40.74 2.78
534 556 4.816385 CCTCTGTGACAAGTATGTGTGTTT 59.184 41.667 0.00 0.00 40.74 2.83
535 557 4.141711 ACCTCTGTGACAAGTATGTGTGTT 60.142 41.667 0.00 0.00 40.74 3.32
536 558 3.388024 ACCTCTGTGACAAGTATGTGTGT 59.612 43.478 0.00 0.00 40.74 3.72
537 559 3.990469 GACCTCTGTGACAAGTATGTGTG 59.010 47.826 0.00 0.00 40.74 3.82
538 560 3.006967 GGACCTCTGTGACAAGTATGTGT 59.993 47.826 0.00 0.00 40.74 3.72
539 561 3.589988 GGACCTCTGTGACAAGTATGTG 58.410 50.000 0.00 0.00 40.74 3.21
540 562 2.231478 CGGACCTCTGTGACAAGTATGT 59.769 50.000 0.00 0.00 44.25 2.29
541 563 2.881074 CGGACCTCTGTGACAAGTATG 58.119 52.381 0.00 0.00 0.00 2.39
542 564 1.204941 GCGGACCTCTGTGACAAGTAT 59.795 52.381 0.00 0.00 0.00 2.12
543 565 0.601558 GCGGACCTCTGTGACAAGTA 59.398 55.000 0.00 0.00 0.00 2.24
544 566 1.367840 GCGGACCTCTGTGACAAGT 59.632 57.895 0.00 0.00 0.00 3.16
545 567 1.374758 GGCGGACCTCTGTGACAAG 60.375 63.158 0.00 0.00 0.00 3.16
546 568 1.691195 TTGGCGGACCTCTGTGACAA 61.691 55.000 0.00 0.00 36.63 3.18
547 569 1.691195 TTTGGCGGACCTCTGTGACA 61.691 55.000 0.00 0.00 36.63 3.58
548 570 1.070786 TTTGGCGGACCTCTGTGAC 59.929 57.895 0.00 0.00 36.63 3.67
549 571 1.070786 GTTTGGCGGACCTCTGTGA 59.929 57.895 0.00 0.00 36.63 3.58
550 572 0.320374 TAGTTTGGCGGACCTCTGTG 59.680 55.000 0.00 0.00 36.63 3.66
551 573 1.207329 GATAGTTTGGCGGACCTCTGT 59.793 52.381 0.00 0.00 36.63 3.41
552 574 1.207089 TGATAGTTTGGCGGACCTCTG 59.793 52.381 0.00 0.00 36.63 3.35
553 575 1.568504 TGATAGTTTGGCGGACCTCT 58.431 50.000 0.00 0.00 36.63 3.69
554 576 2.007608 GTTGATAGTTTGGCGGACCTC 58.992 52.381 0.00 0.00 36.63 3.85
555 577 1.349688 TGTTGATAGTTTGGCGGACCT 59.650 47.619 0.00 0.00 36.63 3.85
556 578 1.816074 TGTTGATAGTTTGGCGGACC 58.184 50.000 0.00 0.00 0.00 4.46
557 579 2.354821 GGATGTTGATAGTTTGGCGGAC 59.645 50.000 0.00 0.00 0.00 4.79
558 580 2.639065 GGATGTTGATAGTTTGGCGGA 58.361 47.619 0.00 0.00 0.00 5.54
559 581 1.676006 GGGATGTTGATAGTTTGGCGG 59.324 52.381 0.00 0.00 0.00 6.13
560 582 2.643551 AGGGATGTTGATAGTTTGGCG 58.356 47.619 0.00 0.00 0.00 5.69
561 583 4.580580 CCTAAGGGATGTTGATAGTTTGGC 59.419 45.833 0.00 0.00 33.58 4.52
562 584 5.823045 GTCCTAAGGGATGTTGATAGTTTGG 59.177 44.000 0.00 0.00 44.33 3.28
563 585 6.414732 TGTCCTAAGGGATGTTGATAGTTTG 58.585 40.000 0.00 0.00 44.33 2.93
564 586 6.636454 TGTCCTAAGGGATGTTGATAGTTT 57.364 37.500 0.00 0.00 44.33 2.66
565 587 6.158695 ACATGTCCTAAGGGATGTTGATAGTT 59.841 38.462 0.00 0.00 44.33 2.24
566 588 5.667626 ACATGTCCTAAGGGATGTTGATAGT 59.332 40.000 0.00 0.00 44.33 2.12
567 589 6.042552 AGACATGTCCTAAGGGATGTTGATAG 59.957 42.308 22.21 0.00 44.33 2.08
568 590 5.905331 AGACATGTCCTAAGGGATGTTGATA 59.095 40.000 22.21 0.00 44.33 2.15
569 591 4.723789 AGACATGTCCTAAGGGATGTTGAT 59.276 41.667 22.21 0.00 44.33 2.57
570 592 4.104086 AGACATGTCCTAAGGGATGTTGA 58.896 43.478 22.21 0.00 44.33 3.18
571 593 4.494091 AGACATGTCCTAAGGGATGTTG 57.506 45.455 22.21 3.94 44.33 3.33
572 594 5.487488 TGTTAGACATGTCCTAAGGGATGTT 59.513 40.000 22.21 1.73 44.33 2.71
573 595 5.030147 TGTTAGACATGTCCTAAGGGATGT 58.970 41.667 22.21 2.25 44.33 3.06
574 596 5.614324 TGTTAGACATGTCCTAAGGGATG 57.386 43.478 22.21 0.00 44.33 3.51
575 597 6.636454 TTTGTTAGACATGTCCTAAGGGAT 57.364 37.500 22.21 3.75 44.33 3.85
576 598 6.442541 TTTTGTTAGACATGTCCTAAGGGA 57.557 37.500 22.21 1.76 39.70 4.20
597 619 5.382618 TTGCCAAGTTTTGTTGCATTTTT 57.617 30.435 0.00 0.00 0.00 1.94
598 620 5.382618 TTTGCCAAGTTTTGTTGCATTTT 57.617 30.435 0.00 0.00 0.00 1.82
599 621 5.579564 ATTTGCCAAGTTTTGTTGCATTT 57.420 30.435 0.00 0.00 0.00 2.32
600 622 5.579564 AATTTGCCAAGTTTTGTTGCATT 57.420 30.435 0.00 0.00 0.00 3.56
601 623 5.579564 AAATTTGCCAAGTTTTGTTGCAT 57.420 30.435 0.00 0.00 0.00 3.96
602 624 6.690194 ATAAATTTGCCAAGTTTTGTTGCA 57.310 29.167 3.15 0.00 0.00 4.08
603 625 7.699812 TGAAATAAATTTGCCAAGTTTTGTTGC 59.300 29.630 3.15 0.66 0.00 4.17
604 626 9.565213 TTGAAATAAATTTGCCAAGTTTTGTTG 57.435 25.926 3.15 0.00 0.00 3.33
605 627 9.786105 CTTGAAATAAATTTGCCAAGTTTTGTT 57.214 25.926 3.15 0.00 31.91 2.83
606 628 8.955388 ACTTGAAATAAATTTGCCAAGTTTTGT 58.045 25.926 16.46 0.00 39.63 2.83
607 629 9.224058 CACTTGAAATAAATTTGCCAAGTTTTG 57.776 29.630 18.20 9.94 40.14 2.44
608 630 7.914871 GCACTTGAAATAAATTTGCCAAGTTTT 59.085 29.630 18.20 0.00 40.14 2.43
609 631 7.066766 TGCACTTGAAATAAATTTGCCAAGTTT 59.933 29.630 18.20 3.36 40.14 2.66
610 632 6.541641 TGCACTTGAAATAAATTTGCCAAGTT 59.458 30.769 18.20 0.51 40.14 2.66
611 633 6.054295 TGCACTTGAAATAAATTTGCCAAGT 58.946 32.000 16.46 16.46 41.50 3.16
612 634 6.542574 TGCACTTGAAATAAATTTGCCAAG 57.457 33.333 15.63 15.63 37.49 3.61
613 635 6.935771 AGATGCACTTGAAATAAATTTGCCAA 59.064 30.769 0.00 0.00 0.00 4.52
614 636 6.465948 AGATGCACTTGAAATAAATTTGCCA 58.534 32.000 0.00 0.00 0.00 4.92
615 637 6.973229 AGATGCACTTGAAATAAATTTGCC 57.027 33.333 0.00 0.00 0.00 4.52
622 644 8.443160 CGACTCTTTTAGATGCACTTGAAATAA 58.557 33.333 0.00 0.00 0.00 1.40
623 645 7.602644 ACGACTCTTTTAGATGCACTTGAAATA 59.397 33.333 0.00 0.00 0.00 1.40
624 646 6.428159 ACGACTCTTTTAGATGCACTTGAAAT 59.572 34.615 0.00 0.00 0.00 2.17
625 647 5.758296 ACGACTCTTTTAGATGCACTTGAAA 59.242 36.000 0.00 0.00 0.00 2.69
626 648 5.297547 ACGACTCTTTTAGATGCACTTGAA 58.702 37.500 0.00 0.00 0.00 2.69
627 649 4.883083 ACGACTCTTTTAGATGCACTTGA 58.117 39.130 0.00 0.00 0.00 3.02
628 650 5.377358 CAACGACTCTTTTAGATGCACTTG 58.623 41.667 0.00 0.00 0.00 3.16
629 651 4.083802 GCAACGACTCTTTTAGATGCACTT 60.084 41.667 0.00 0.00 0.00 3.16
630 652 3.433615 GCAACGACTCTTTTAGATGCACT 59.566 43.478 0.00 0.00 0.00 4.40
631 653 3.722082 CGCAACGACTCTTTTAGATGCAC 60.722 47.826 0.00 0.00 0.00 4.57
632 654 2.411748 CGCAACGACTCTTTTAGATGCA 59.588 45.455 0.00 0.00 0.00 3.96
633 655 2.784665 GCGCAACGACTCTTTTAGATGC 60.785 50.000 0.30 0.00 0.00 3.91
634 656 2.668457 AGCGCAACGACTCTTTTAGATG 59.332 45.455 11.47 0.00 0.00 2.90
635 657 2.960819 AGCGCAACGACTCTTTTAGAT 58.039 42.857 11.47 0.00 0.00 1.98
636 658 2.433868 AGCGCAACGACTCTTTTAGA 57.566 45.000 11.47 0.00 0.00 2.10
637 659 2.731976 AGAAGCGCAACGACTCTTTTAG 59.268 45.455 11.47 0.00 0.00 1.85
638 660 2.729882 GAGAAGCGCAACGACTCTTTTA 59.270 45.455 11.47 0.00 0.00 1.52
639 661 1.527311 GAGAAGCGCAACGACTCTTTT 59.473 47.619 11.47 0.00 0.00 2.27
640 662 1.140816 GAGAAGCGCAACGACTCTTT 58.859 50.000 11.47 0.00 0.00 2.52
641 663 0.667792 GGAGAAGCGCAACGACTCTT 60.668 55.000 11.47 0.00 0.00 2.85
642 664 1.080434 GGAGAAGCGCAACGACTCT 60.080 57.895 11.47 0.62 0.00 3.24
643 665 0.944311 TTGGAGAAGCGCAACGACTC 60.944 55.000 11.47 10.21 0.00 3.36
644 666 0.320771 ATTGGAGAAGCGCAACGACT 60.321 50.000 11.47 0.27 0.00 4.18
645 667 1.355971 TATTGGAGAAGCGCAACGAC 58.644 50.000 11.47 0.00 0.00 4.34
646 668 2.087501 TTATTGGAGAAGCGCAACGA 57.912 45.000 11.47 0.00 0.00 3.85
647 669 2.892373 TTTATTGGAGAAGCGCAACG 57.108 45.000 11.47 0.00 0.00 4.10
648 670 4.419522 TCTTTTATTGGAGAAGCGCAAC 57.580 40.909 11.47 2.34 0.00 4.17
649 671 5.645929 TGTATCTTTTATTGGAGAAGCGCAA 59.354 36.000 11.47 0.00 0.00 4.85
650 672 5.064707 GTGTATCTTTTATTGGAGAAGCGCA 59.935 40.000 11.47 0.00 0.00 6.09
651 673 5.064707 TGTGTATCTTTTATTGGAGAAGCGC 59.935 40.000 0.00 0.00 0.00 5.92
652 674 6.478588 GTGTGTATCTTTTATTGGAGAAGCG 58.521 40.000 0.00 0.00 0.00 4.68
653 675 6.478588 CGTGTGTATCTTTTATTGGAGAAGC 58.521 40.000 0.00 0.00 0.00 3.86
654 676 6.313905 AGCGTGTGTATCTTTTATTGGAGAAG 59.686 38.462 0.00 0.00 0.00 2.85
655 677 6.170506 AGCGTGTGTATCTTTTATTGGAGAA 58.829 36.000 0.00 0.00 0.00 2.87
656 678 5.730550 AGCGTGTGTATCTTTTATTGGAGA 58.269 37.500 0.00 0.00 0.00 3.71
657 679 5.276395 CGAGCGTGTGTATCTTTTATTGGAG 60.276 44.000 0.00 0.00 0.00 3.86
658 680 4.565166 CGAGCGTGTGTATCTTTTATTGGA 59.435 41.667 0.00 0.00 0.00 3.53
659 681 4.782195 GCGAGCGTGTGTATCTTTTATTGG 60.782 45.833 0.00 0.00 0.00 3.16
660 682 4.201676 TGCGAGCGTGTGTATCTTTTATTG 60.202 41.667 0.00 0.00 0.00 1.90
661 683 3.930229 TGCGAGCGTGTGTATCTTTTATT 59.070 39.130 0.00 0.00 0.00 1.40
662 684 3.306166 GTGCGAGCGTGTGTATCTTTTAT 59.694 43.478 0.00 0.00 0.00 1.40
663 685 2.664568 GTGCGAGCGTGTGTATCTTTTA 59.335 45.455 0.00 0.00 0.00 1.52
664 686 1.459592 GTGCGAGCGTGTGTATCTTTT 59.540 47.619 0.00 0.00 0.00 2.27
665 687 1.068474 GTGCGAGCGTGTGTATCTTT 58.932 50.000 0.00 0.00 0.00 2.52
666 688 1.071019 CGTGCGAGCGTGTGTATCTT 61.071 55.000 0.00 0.00 0.00 2.40
667 689 1.514228 CGTGCGAGCGTGTGTATCT 60.514 57.895 0.00 0.00 0.00 1.98
668 690 1.342082 AACGTGCGAGCGTGTGTATC 61.342 55.000 5.52 0.00 45.00 2.24
669 691 1.372499 AACGTGCGAGCGTGTGTAT 60.372 52.632 5.52 0.00 45.00 2.29
670 692 2.026445 AACGTGCGAGCGTGTGTA 59.974 55.556 5.52 0.00 45.00 2.90
671 693 3.626244 CAACGTGCGAGCGTGTGT 61.626 61.111 5.52 0.00 45.00 3.72
672 694 4.993945 GCAACGTGCGAGCGTGTG 62.994 66.667 5.52 7.43 45.00 3.82
681 703 3.698463 ACGTGTAGCGCAACGTGC 61.698 61.111 27.48 5.42 46.11 5.34
682 704 2.167684 CACGTGTAGCGCAACGTG 59.832 61.111 33.25 33.25 46.11 4.49
683 705 3.033764 CCACGTGTAGCGCAACGT 61.034 61.111 24.20 24.20 46.11 3.99
684 706 3.033764 ACCACGTGTAGCGCAACG 61.034 61.111 23.08 23.08 46.11 4.10
685 707 2.241880 ACACCACGTGTAGCGCAAC 61.242 57.895 15.65 3.70 45.56 4.17
686 708 2.107343 ACACCACGTGTAGCGCAA 59.893 55.556 15.65 0.00 45.56 4.85
687 709 2.660224 CACACCACGTGTAGCGCA 60.660 61.111 15.65 0.00 45.65 6.09
853 882 2.394563 GCTGCTTGCTCTTCCGGTC 61.395 63.158 0.00 0.00 38.95 4.79
876 905 3.740397 TAGGTCGACCGTGGTGCG 61.740 66.667 28.26 0.31 42.08 5.34
878 907 2.570181 GGTAGGTCGACCGTGGTG 59.430 66.667 28.26 0.00 42.08 4.17
930 975 3.350031 AAAGGGGATCCGCAGCAGG 62.350 63.158 28.74 0.00 38.33 4.85
932 977 2.272146 GAAAGGGGATCCGCAGCA 59.728 61.111 28.74 0.00 38.33 4.41
952 997 1.270907 GACTGGAGGAGAGAAGGCAA 58.729 55.000 0.00 0.00 0.00 4.52
965 1010 0.967887 CGGAAGAGGAGCTGACTGGA 60.968 60.000 0.00 0.00 0.00 3.86
968 1013 2.705821 CGCGGAAGAGGAGCTGACT 61.706 63.158 0.00 0.00 0.00 3.41
1092 1137 1.738350 GAAGAACTAAGAAAGGGCGGC 59.262 52.381 0.00 0.00 0.00 6.53
1128 1183 4.098654 AGCTAGCATACGAGTGAACAGAAT 59.901 41.667 18.83 0.00 0.00 2.40
1129 1184 3.444034 AGCTAGCATACGAGTGAACAGAA 59.556 43.478 18.83 0.00 0.00 3.02
1275 1355 2.163815 CACTACGACCAGAACGAATCCT 59.836 50.000 0.00 0.00 34.70 3.24
1359 1447 1.679139 TCTGTTGTGGTTCAAGCTGG 58.321 50.000 0.00 0.00 36.66 4.85
1371 1463 4.918810 GACAGGTCCAAATTTCTGTTGT 57.081 40.909 10.56 2.67 40.13 3.32
1394 1486 3.432252 CCTACAACTAAGTTTCAGCGTGG 59.568 47.826 0.00 0.00 0.00 4.94
1413 1506 2.975536 CCGAGTTGGCGTTCCCTA 59.024 61.111 0.00 0.00 0.00 3.53
1446 1539 6.575162 AACGTGCTATTTCCTTTCAGAAAT 57.425 33.333 0.00 5.02 45.89 2.17
1455 1548 8.556213 TCTATTTGTTAAACGTGCTATTTCCT 57.444 30.769 0.00 0.00 0.00 3.36
1768 1870 9.424319 GTACTAAAGATTGTCTTCATGACTTCA 57.576 33.333 0.00 0.00 45.54 3.02
1769 1871 9.646427 AGTACTAAAGATTGTCTTCATGACTTC 57.354 33.333 0.00 0.00 45.54 3.01
1881 1983 5.095490 CCTGCCGCTTTCACTTAAAATTAG 58.905 41.667 0.00 0.00 0.00 1.73
1888 1990 0.618458 ATCCCTGCCGCTTTCACTTA 59.382 50.000 0.00 0.00 0.00 2.24
1933 2055 1.677217 GGACTAGAGGCACCAAAGCAG 60.677 57.143 0.00 0.00 35.83 4.24
2149 2272 5.063817 GCAATTTTTCCCATTACATCAGTGC 59.936 40.000 0.00 0.00 0.00 4.40
2164 2287 2.485038 CCAGGCCAACATGCAATTTTTC 59.515 45.455 5.01 0.00 0.00 2.29
2170 2293 3.312718 GCCCAGGCCAACATGCAA 61.313 61.111 5.01 0.00 34.56 4.08
2206 2331 3.479203 CGGCACCATGCTAGGGGA 61.479 66.667 1.14 0.00 44.28 4.81
2207 2332 4.569180 CCGGCACCATGCTAGGGG 62.569 72.222 0.13 0.00 44.28 4.79
2208 2333 3.797353 ACCGGCACCATGCTAGGG 61.797 66.667 0.00 10.87 44.28 3.53
2298 2464 3.125316 ACTCATAGACTAGTCGAGCGAC 58.875 50.000 20.05 14.65 44.86 5.19
2299 2465 3.382855 GACTCATAGACTAGTCGAGCGA 58.617 50.000 20.05 13.85 33.38 4.93
2300 2466 3.781341 GACTCATAGACTAGTCGAGCG 57.219 52.381 20.05 10.98 33.38 5.03
2305 2471 8.695284 CATATTTTTGCGACTCATAGACTAGTC 58.305 37.037 15.41 15.41 39.00 2.59
2306 2472 7.653713 CCATATTTTTGCGACTCATAGACTAGT 59.346 37.037 0.00 0.00 0.00 2.57
2307 2473 7.653713 ACCATATTTTTGCGACTCATAGACTAG 59.346 37.037 0.00 0.00 0.00 2.57
2308 2474 7.497595 ACCATATTTTTGCGACTCATAGACTA 58.502 34.615 0.00 0.00 0.00 2.59
2309 2475 6.349300 ACCATATTTTTGCGACTCATAGACT 58.651 36.000 0.00 0.00 0.00 3.24
2310 2476 6.562270 CGACCATATTTTTGCGACTCATAGAC 60.562 42.308 0.00 0.00 0.00 2.59
2311 2477 5.462068 CGACCATATTTTTGCGACTCATAGA 59.538 40.000 0.00 0.00 0.00 1.98
2312 2478 5.462068 TCGACCATATTTTTGCGACTCATAG 59.538 40.000 0.00 0.00 0.00 2.23
2313 2479 5.233476 GTCGACCATATTTTTGCGACTCATA 59.767 40.000 3.51 0.00 43.18 2.15
2314 2480 4.034048 GTCGACCATATTTTTGCGACTCAT 59.966 41.667 3.51 0.00 43.18 2.90
2315 2481 3.369756 GTCGACCATATTTTTGCGACTCA 59.630 43.478 3.51 0.00 43.18 3.41
2316 2482 3.924610 GTCGACCATATTTTTGCGACTC 58.075 45.455 3.51 0.00 43.18 3.36
2318 2484 3.369756 TGAGTCGACCATATTTTTGCGAC 59.630 43.478 13.01 0.00 45.83 5.19
2319 2485 3.591023 TGAGTCGACCATATTTTTGCGA 58.409 40.909 13.01 0.00 0.00 5.10
2320 2486 3.785505 GCTGAGTCGACCATATTTTTGCG 60.786 47.826 13.01 0.00 0.00 4.85
2321 2487 3.375299 AGCTGAGTCGACCATATTTTTGC 59.625 43.478 13.01 7.80 0.00 3.68
2322 2488 5.551760 AAGCTGAGTCGACCATATTTTTG 57.448 39.130 13.01 0.00 0.00 2.44
2323 2489 6.313905 CACTAAGCTGAGTCGACCATATTTTT 59.686 38.462 13.01 1.53 0.00 1.94
2324 2490 5.812642 CACTAAGCTGAGTCGACCATATTTT 59.187 40.000 13.01 3.16 0.00 1.82
2325 2491 5.105310 ACACTAAGCTGAGTCGACCATATTT 60.105 40.000 13.01 4.77 0.00 1.40
2326 2492 4.402793 ACACTAAGCTGAGTCGACCATATT 59.597 41.667 13.01 9.73 0.00 1.28
2327 2493 3.954904 ACACTAAGCTGAGTCGACCATAT 59.045 43.478 13.01 0.00 0.00 1.78
2328 2494 3.353557 ACACTAAGCTGAGTCGACCATA 58.646 45.455 13.01 0.00 0.00 2.74
2329 2495 2.164624 GACACTAAGCTGAGTCGACCAT 59.835 50.000 13.01 0.00 0.00 3.55
2330 2496 1.540267 GACACTAAGCTGAGTCGACCA 59.460 52.381 13.01 9.18 0.00 4.02
2331 2497 2.265647 GACACTAAGCTGAGTCGACC 57.734 55.000 13.01 4.42 0.00 4.79
2335 2501 2.474856 CGAGTCGACACTAAGCTGAGTC 60.475 54.545 19.50 0.00 30.63 3.36
2336 2502 1.465387 CGAGTCGACACTAAGCTGAGT 59.535 52.381 19.50 0.00 30.63 3.41
2337 2503 1.792273 GCGAGTCGACACTAAGCTGAG 60.792 57.143 18.61 0.00 34.91 3.35
2338 2504 0.168348 GCGAGTCGACACTAAGCTGA 59.832 55.000 18.61 0.00 34.91 4.26
2339 2505 1.128724 CGCGAGTCGACACTAAGCTG 61.129 60.000 18.61 7.91 41.67 4.24
2340 2506 1.134901 CGCGAGTCGACACTAAGCT 59.865 57.895 18.61 0.00 41.67 3.74
2341 2507 1.134075 TCGCGAGTCGACACTAAGC 59.866 57.895 18.61 13.51 43.16 3.09
2349 2515 1.352882 GACTCAGAGTCGCGAGTCGA 61.353 60.000 32.03 28.39 46.20 4.20
2350 2516 1.059681 GACTCAGAGTCGCGAGTCG 59.940 63.158 32.03 26.38 46.20 4.18
2358 2524 3.592059 AGACTAGTCACGACTCAGAGTC 58.408 50.000 24.44 19.43 41.45 3.36
2359 2525 3.007074 TGAGACTAGTCACGACTCAGAGT 59.993 47.826 24.44 1.46 42.54 3.24
2360 2526 3.591023 TGAGACTAGTCACGACTCAGAG 58.409 50.000 24.44 0.00 42.54 3.35
2361 2527 3.679824 TGAGACTAGTCACGACTCAGA 57.320 47.619 24.44 0.00 42.54 3.27
2362 2528 4.717991 CTTTGAGACTAGTCACGACTCAG 58.282 47.826 24.44 9.08 42.54 3.35
2363 2529 3.058155 GCTTTGAGACTAGTCACGACTCA 60.058 47.826 24.44 15.42 42.54 3.41
2364 2530 3.058155 TGCTTTGAGACTAGTCACGACTC 60.058 47.826 24.44 13.05 42.54 3.36
2365 2531 2.885266 TGCTTTGAGACTAGTCACGACT 59.115 45.455 24.44 4.87 45.02 4.18
2366 2532 3.238441 CTGCTTTGAGACTAGTCACGAC 58.762 50.000 24.44 12.68 0.00 4.34
2367 2533 2.229062 CCTGCTTTGAGACTAGTCACGA 59.771 50.000 24.44 15.35 0.00 4.35
2368 2534 2.600731 CCTGCTTTGAGACTAGTCACG 58.399 52.381 24.44 7.39 0.00 4.35
2369 2535 2.028567 AGCCTGCTTTGAGACTAGTCAC 60.029 50.000 24.44 18.60 0.00 3.67
2370 2536 2.232452 GAGCCTGCTTTGAGACTAGTCA 59.768 50.000 24.44 2.68 0.00 3.41
2371 2537 2.733858 CGAGCCTGCTTTGAGACTAGTC 60.734 54.545 15.41 15.41 0.00 2.59
2372 2538 1.203523 CGAGCCTGCTTTGAGACTAGT 59.796 52.381 0.00 0.00 0.00 2.57
2373 2539 1.474478 TCGAGCCTGCTTTGAGACTAG 59.526 52.381 0.00 0.00 0.00 2.57
2374 2540 1.202582 GTCGAGCCTGCTTTGAGACTA 59.797 52.381 0.00 0.00 0.00 2.59
2375 2541 0.037790 GTCGAGCCTGCTTTGAGACT 60.038 55.000 0.00 0.00 0.00 3.24
2376 2542 0.037790 AGTCGAGCCTGCTTTGAGAC 60.038 55.000 0.00 2.04 0.00 3.36
2377 2543 0.681733 AAGTCGAGCCTGCTTTGAGA 59.318 50.000 0.00 0.00 0.00 3.27
2378 2544 1.074752 GAAGTCGAGCCTGCTTTGAG 58.925 55.000 0.00 0.00 0.00 3.02
2379 2545 0.681733 AGAAGTCGAGCCTGCTTTGA 59.318 50.000 0.00 0.00 0.00 2.69
2380 2546 1.462670 GAAGAAGTCGAGCCTGCTTTG 59.537 52.381 0.00 0.00 30.07 2.77
2381 2547 1.609320 GGAAGAAGTCGAGCCTGCTTT 60.609 52.381 0.00 0.00 30.07 3.51
2382 2548 0.036858 GGAAGAAGTCGAGCCTGCTT 60.037 55.000 0.00 0.00 32.75 3.91
2383 2549 1.594310 GGAAGAAGTCGAGCCTGCT 59.406 57.895 0.00 0.00 0.00 4.24
2384 2550 1.807573 CGGAAGAAGTCGAGCCTGC 60.808 63.158 0.00 0.00 0.00 4.85
2385 2551 0.179150 CTCGGAAGAAGTCGAGCCTG 60.179 60.000 0.00 0.00 44.68 4.85
2386 2552 2.185238 CTCGGAAGAAGTCGAGCCT 58.815 57.895 0.00 0.00 44.68 4.58
2387 2553 4.796225 CTCGGAAGAAGTCGAGCC 57.204 61.111 0.00 0.00 44.68 4.70
2392 2558 1.073768 GCAGCGACTCGGAAGAAGTC 61.074 60.000 0.00 0.00 41.32 3.01
2393 2559 1.080434 GCAGCGACTCGGAAGAAGT 60.080 57.895 0.00 0.00 41.32 3.01
2394 2560 1.807573 GGCAGCGACTCGGAAGAAG 60.808 63.158 0.00 0.00 41.32 2.85
2395 2561 2.261671 GGCAGCGACTCGGAAGAA 59.738 61.111 0.00 0.00 41.32 2.52
2396 2562 3.760035 GGGCAGCGACTCGGAAGA 61.760 66.667 0.00 0.00 39.12 2.87
2397 2563 4.821589 GGGGCAGCGACTCGGAAG 62.822 72.222 0.00 0.00 0.00 3.46
2401 2567 4.504916 CTCTGGGGCAGCGACTCG 62.505 72.222 0.00 0.00 0.00 4.18
2402 2568 4.828925 GCTCTGGGGCAGCGACTC 62.829 72.222 0.00 0.00 0.00 3.36
2407 2573 4.400961 AAGTCGCTCTGGGGCAGC 62.401 66.667 0.00 0.00 0.00 5.25
2408 2574 2.435586 CAAGTCGCTCTGGGGCAG 60.436 66.667 0.00 0.00 0.00 4.85
2409 2575 4.704833 GCAAGTCGCTCTGGGGCA 62.705 66.667 0.00 0.00 37.77 5.36
2410 2576 3.984193 ATGCAAGTCGCTCTGGGGC 62.984 63.158 0.00 0.00 43.06 5.80
2411 2577 2.110967 CATGCAAGTCGCTCTGGGG 61.111 63.158 0.00 0.00 43.06 4.96
2412 2578 1.078918 TCATGCAAGTCGCTCTGGG 60.079 57.895 0.00 0.00 43.06 4.45
2413 2579 0.390866 ACTCATGCAAGTCGCTCTGG 60.391 55.000 0.00 0.00 43.06 3.86
2414 2580 0.997932 GACTCATGCAAGTCGCTCTG 59.002 55.000 2.87 0.00 43.06 3.35
2415 2581 3.432517 GACTCATGCAAGTCGCTCT 57.567 52.632 2.87 0.00 43.06 4.09
2420 2586 0.734253 AGTCGCGACTCATGCAAGTC 60.734 55.000 34.98 6.38 41.88 3.01
2421 2587 1.290324 AGTCGCGACTCATGCAAGT 59.710 52.632 34.98 11.12 36.92 3.16
2422 2588 4.175599 AGTCGCGACTCATGCAAG 57.824 55.556 34.98 0.00 36.92 4.01
2430 2596 1.531149 CATGGTTTTTGAGTCGCGACT 59.469 47.619 39.89 39.89 45.84 4.18
2431 2597 1.399727 CCATGGTTTTTGAGTCGCGAC 60.400 52.381 31.30 31.30 0.00 5.19
2432 2598 0.871722 CCATGGTTTTTGAGTCGCGA 59.128 50.000 3.71 3.71 0.00 5.87
2433 2599 0.729140 GCCATGGTTTTTGAGTCGCG 60.729 55.000 14.67 0.00 0.00 5.87
2434 2600 0.729140 CGCCATGGTTTTTGAGTCGC 60.729 55.000 14.67 0.00 0.00 5.19
2435 2601 0.871722 TCGCCATGGTTTTTGAGTCG 59.128 50.000 14.67 4.90 0.00 4.18
2436 2602 1.401539 GCTCGCCATGGTTTTTGAGTC 60.402 52.381 14.67 6.28 0.00 3.36
2437 2603 0.598065 GCTCGCCATGGTTTTTGAGT 59.402 50.000 14.67 0.00 0.00 3.41
2438 2604 0.597568 TGCTCGCCATGGTTTTTGAG 59.402 50.000 14.67 13.39 0.00 3.02
2439 2605 0.313672 GTGCTCGCCATGGTTTTTGA 59.686 50.000 14.67 3.31 0.00 2.69
2440 2606 0.667184 GGTGCTCGCCATGGTTTTTG 60.667 55.000 14.67 0.97 0.00 2.44
2441 2607 1.665442 GGTGCTCGCCATGGTTTTT 59.335 52.632 14.67 0.00 0.00 1.94
2442 2608 2.275380 GGGTGCTCGCCATGGTTTT 61.275 57.895 14.67 0.00 0.00 2.43
2443 2609 2.676471 GGGTGCTCGCCATGGTTT 60.676 61.111 14.67 0.00 0.00 3.27
2444 2610 3.925630 CTGGGTGCTCGCCATGGTT 62.926 63.158 14.67 0.00 0.00 3.67
2445 2611 4.415150 CTGGGTGCTCGCCATGGT 62.415 66.667 14.67 0.00 0.00 3.55
2447 2613 4.415150 ACCTGGGTGCTCGCCATG 62.415 66.667 0.00 0.00 0.00 3.66
2448 2614 4.101448 GACCTGGGTGCTCGCCAT 62.101 66.667 0.00 0.00 0.00 4.40
2459 2625 4.778415 CTCCGACGCGTGACCTGG 62.778 72.222 20.70 10.73 0.00 4.45
2623 2789 0.740868 CACCACATGGCCTCACGTAG 60.741 60.000 3.32 0.00 39.32 3.51
2820 2999 2.380064 AACCATGTCAGGAAAAGCCA 57.620 45.000 0.00 0.00 40.02 4.75
2833 3012 2.134346 CAAAACCAAGCCGAAACCATG 58.866 47.619 0.00 0.00 0.00 3.66
2863 3042 9.988815 GCCTGATATATGGGATAGTAATAACTG 57.011 37.037 5.72 0.00 36.36 3.16
2917 3096 4.023291 ACTATACCAAATGCCCAAACAGG 58.977 43.478 0.00 0.00 37.03 4.00
3111 4398 2.888911 GCTACCTTACCACAGAGGACCT 60.889 54.545 0.00 0.00 41.22 3.85
3851 5138 6.358991 TGAGATCAGCATTATCATGTTTCCA 58.641 36.000 0.00 0.00 32.28 3.53
4035 5322 9.512588 TTTCAAACCATAATTTAAATGGCATGT 57.487 25.926 0.00 0.00 46.63 3.21
4064 5351 8.034804 AGTGAACATAATTTAAATGGCAGGTTC 58.965 33.333 18.65 18.65 33.45 3.62
4235 5524 9.750125 CAAATTATAAAATGGCCTAACTTCTCC 57.250 33.333 3.32 0.00 0.00 3.71
4236 5525 9.750125 CCAAATTATAAAATGGCCTAACTTCTC 57.250 33.333 3.32 0.00 0.00 2.87
4246 5535 5.983118 CCTCCGTTCCAAATTATAAAATGGC 59.017 40.000 12.75 2.78 32.87 4.40
4349 5638 3.244353 ACCATGAGTCTCTGACAAACCTG 60.244 47.826 0.65 0.00 34.60 4.00
4649 5941 3.410631 TTCTTCTGCGTACCATTTCCA 57.589 42.857 0.00 0.00 0.00 3.53
4836 6128 5.138125 ACAATCAATGTTCAACCATCCAC 57.862 39.130 0.00 0.00 40.06 4.02
4850 6142 5.069516 ACCAAAGAAGCTGACAACAATCAAT 59.930 36.000 0.00 0.00 0.00 2.57
4873 6165 1.067516 CCGATTGGAAATGATGCCCAC 59.932 52.381 0.00 0.00 37.49 4.61
4955 6247 4.836175 TGGGACTGTACACTGATCTGTTTA 59.164 41.667 1.95 0.00 0.00 2.01
5115 6411 6.673978 TCCTCTAGTACTACCTAACTGTACCA 59.326 42.308 0.00 0.00 37.76 3.25
5202 6498 4.479786 TCGACCATGTGGATGACATTAA 57.520 40.909 5.96 0.00 43.20 1.40
5240 6536 4.647564 AGTCACCAATGGAATTCTGACT 57.352 40.909 14.42 14.42 42.42 3.41
5247 6543 2.173519 CTGCCAAGTCACCAATGGAAT 58.826 47.619 6.16 0.00 36.27 3.01
5257 6553 0.472044 TGTTAGCACCTGCCAAGTCA 59.528 50.000 0.00 0.00 43.38 3.41
5361 6657 3.036091 CCCTCGGTATAAACCTCTCCAA 58.964 50.000 0.00 0.00 44.35 3.53
5439 6735 5.425539 AGAACTGGGCTTACTTATTAGCTCA 59.574 40.000 0.00 0.00 45.20 4.26
5482 6778 2.092429 TCAACCAGGCAGACAAAAGAGT 60.092 45.455 0.00 0.00 0.00 3.24
5561 6857 0.890996 CGGAGCAGAAGCCAAAAGGT 60.891 55.000 0.00 0.00 43.56 3.50
5580 6876 3.070018 CGGAAATGATGACCAGATAGGC 58.930 50.000 0.00 0.00 43.14 3.93
5652 6948 4.344679 ACTTGCATCAAGAATTTCCAACCA 59.655 37.500 12.89 0.00 43.42 3.67
5860 7159 0.466124 GGTGCTCAGTACCCAGATCC 59.534 60.000 0.00 0.00 32.14 3.36
5896 7195 7.269316 ACACAAAACTATGTTTCCGGAATTTT 58.731 30.769 19.62 16.81 0.00 1.82
5967 7370 4.928661 AGTGAGCTACAAAAGTAATGCG 57.071 40.909 0.00 0.00 0.00 4.73
6068 11405 4.407818 CTCTCACTGTAGAATGTCGACAC 58.592 47.826 22.71 9.44 29.19 3.67
6181 11518 3.820557 TCTGGTCAAGGCCATAAATAGC 58.179 45.455 5.01 0.00 37.96 2.97
6191 11528 1.745653 GCTTTGGTATCTGGTCAAGGC 59.254 52.381 0.00 0.00 36.60 4.35
6518 11855 0.250467 GTGAAGTGGCTCCAAGCTCA 60.250 55.000 0.00 0.00 41.99 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.