Multiple sequence alignment - TraesCS2B01G178600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G178600 chr2B 100.000 1993 0 0 1 1993 153675815 153673823 0.000000e+00 3681.0
1 TraesCS2B01G178600 chr2B 100.000 1125 0 0 2192 3316 153673624 153672500 0.000000e+00 2078.0
2 TraesCS2B01G178600 chr2D 92.631 1072 60 8 935 1993 102298523 102297458 0.000000e+00 1524.0
3 TraesCS2B01G178600 chr2D 93.575 358 20 3 369 724 102299178 102298822 6.300000e-147 531.0
4 TraesCS2B01G178600 chr2D 86.199 442 27 14 2192 2616 102297400 102296976 6.530000e-122 448.0
5 TraesCS2B01G178600 chr2D 87.222 360 22 11 2 346 102299520 102299170 4.010000e-104 388.0
6 TraesCS2B01G178600 chr2D 85.841 226 14 8 3106 3316 102296784 102296562 1.200000e-54 224.0
7 TraesCS2B01G178600 chr2A 87.215 790 61 21 1 770 101402841 101402072 0.000000e+00 863.0
8 TraesCS2B01G178600 chr2A 93.926 461 24 3 935 1395 101401831 101401375 0.000000e+00 693.0
9 TraesCS2B01G178600 chr2A 91.324 438 36 2 1558 1993 101401194 101400757 6.120000e-167 597.0
10 TraesCS2B01G178600 chr2A 84.696 575 50 21 2196 2761 101400679 101400134 1.050000e-149 540.0
11 TraesCS2B01G178600 chr2A 86.038 265 22 6 3067 3316 101400122 101399858 1.520000e-68 270.0
12 TraesCS2B01G178600 chr1A 83.766 154 21 4 2797 2949 71685539 71685389 3.450000e-30 143.0
13 TraesCS2B01G178600 chr3B 79.054 148 27 3 2799 2946 182389796 182389653 7.570000e-17 99.0
14 TraesCS2B01G178600 chr7A 100.000 35 0 0 844 878 692976231 692976265 7.680000e-07 65.8
15 TraesCS2B01G178600 chr7A 100.000 35 0 0 844 878 692994949 692994983 7.680000e-07 65.8
16 TraesCS2B01G178600 chrUn 100.000 33 0 0 845 877 186177400 186177432 9.930000e-06 62.1
17 TraesCS2B01G178600 chrUn 100.000 33 0 0 845 877 247553960 247553992 9.930000e-06 62.1
18 TraesCS2B01G178600 chrUn 100.000 33 0 0 845 877 258927141 258927109 9.930000e-06 62.1
19 TraesCS2B01G178600 chrUn 100.000 33 0 0 845 877 359639404 359639372 9.930000e-06 62.1
20 TraesCS2B01G178600 chrUn 100.000 33 0 0 845 877 422190737 422190705 9.930000e-06 62.1
21 TraesCS2B01G178600 chrUn 100.000 33 0 0 845 877 437989523 437989491 9.930000e-06 62.1
22 TraesCS2B01G178600 chrUn 81.944 72 12 1 2805 2875 229997322 229997393 3.570000e-05 60.2
23 TraesCS2B01G178600 chrUn 81.944 72 12 1 2805 2875 245751388 245751459 3.570000e-05 60.2
24 TraesCS2B01G178600 chr3A 97.297 37 0 1 841 877 227624572 227624607 9.930000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G178600 chr2B 153672500 153675815 3315 True 2879.5 3681 100.0000 1 3316 2 chr2B.!!$R1 3315
1 TraesCS2B01G178600 chr2D 102296562 102299520 2958 True 623.0 1524 89.0936 2 3316 5 chr2D.!!$R1 3314
2 TraesCS2B01G178600 chr2A 101399858 101402841 2983 True 592.6 863 88.6398 1 3316 5 chr2A.!!$R1 3315

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 976 0.830648 GCTAGTACACCATCCAGCCA 59.169 55.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2693 2959 0.034756 AGTTGCTACGCACATGTCCA 59.965 50.0 0.0 0.0 38.71 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 1.944024 CCCAACGCTTTCTGTTACACA 59.056 47.619 0.00 0.00 0.00 3.72
115 116 5.726397 ACGCTTTCTGTTACACATGGTATA 58.274 37.500 0.00 0.00 0.00 1.47
116 117 6.346096 ACGCTTTCTGTTACACATGGTATAT 58.654 36.000 0.00 0.00 0.00 0.86
117 118 6.479001 ACGCTTTCTGTTACACATGGTATATC 59.521 38.462 0.00 0.00 0.00 1.63
118 119 6.478673 CGCTTTCTGTTACACATGGTATATCA 59.521 38.462 0.00 0.00 0.00 2.15
120 121 8.338259 GCTTTCTGTTACACATGGTATATCAAG 58.662 37.037 0.00 0.00 0.00 3.02
123 124 5.935945 TGTTACACATGGTATATCAAGGGG 58.064 41.667 0.00 0.00 0.00 4.79
125 126 4.706842 ACACATGGTATATCAAGGGGAC 57.293 45.455 0.00 0.00 0.00 4.46
127 128 5.473273 ACACATGGTATATCAAGGGGACTA 58.527 41.667 0.00 0.00 42.68 2.59
128 129 6.091555 ACACATGGTATATCAAGGGGACTAT 58.908 40.000 0.00 0.00 42.68 2.12
129 130 6.562608 ACACATGGTATATCAAGGGGACTATT 59.437 38.462 0.00 0.00 42.68 1.73
130 131 6.881065 CACATGGTATATCAAGGGGACTATTG 59.119 42.308 0.00 0.00 42.68 1.90
131 132 6.562608 ACATGGTATATCAAGGGGACTATTGT 59.437 38.462 0.00 0.00 42.68 2.71
169 170 2.147958 TGTTCCAAAGTACGATGGCAC 58.852 47.619 13.38 13.26 36.62 5.01
185 186 5.615289 GATGGCACCAACAGACTATAGATT 58.385 41.667 6.78 0.00 0.00 2.40
186 187 5.435686 TGGCACCAACAGACTATAGATTT 57.564 39.130 6.78 0.00 0.00 2.17
191 198 7.499232 GGCACCAACAGACTATAGATTTAATGT 59.501 37.037 6.78 0.00 0.00 2.71
217 233 3.484524 GCACAGTGAATGCCTTGTG 57.515 52.632 4.15 1.23 42.80 3.33
229 245 2.238521 TGCCTTGTGAATGGGAAGTTC 58.761 47.619 0.00 0.00 0.00 3.01
278 294 6.683360 GCCTTGGGAACTCTATACTAACTCAC 60.683 46.154 0.00 0.00 0.00 3.51
323 339 2.992847 TGTCTCTCTGGGACCAGTTA 57.007 50.000 17.34 6.72 43.96 2.24
329 345 5.187186 GTCTCTCTGGGACCAGTTATGTTTA 59.813 44.000 17.34 0.00 43.96 2.01
337 353 8.041143 TGGGACCAGTTATGTTTATAGCTAAT 57.959 34.615 0.00 0.00 30.31 1.73
338 354 8.154856 TGGGACCAGTTATGTTTATAGCTAATC 58.845 37.037 0.00 0.00 30.31 1.75
339 355 8.376270 GGGACCAGTTATGTTTATAGCTAATCT 58.624 37.037 0.00 0.00 30.31 2.40
355 371 7.366847 AGCTAATCTAAGTTCCATCTTAGCA 57.633 36.000 12.33 0.66 43.60 3.49
356 372 7.972301 AGCTAATCTAAGTTCCATCTTAGCAT 58.028 34.615 12.33 3.63 43.60 3.79
357 373 7.877097 AGCTAATCTAAGTTCCATCTTAGCATG 59.123 37.037 12.33 0.00 43.60 4.06
358 374 7.659390 GCTAATCTAAGTTCCATCTTAGCATGT 59.341 37.037 8.15 0.00 43.60 3.21
361 377 7.898014 TCTAAGTTCCATCTTAGCATGTAGA 57.102 36.000 8.15 0.00 43.60 2.59
362 378 7.946207 TCTAAGTTCCATCTTAGCATGTAGAG 58.054 38.462 8.15 0.00 43.60 2.43
363 379 6.552445 AAGTTCCATCTTAGCATGTAGAGT 57.448 37.500 0.00 0.00 0.00 3.24
364 380 7.661536 AAGTTCCATCTTAGCATGTAGAGTA 57.338 36.000 0.00 0.00 0.00 2.59
365 381 7.045126 AGTTCCATCTTAGCATGTAGAGTAC 57.955 40.000 0.00 0.00 0.00 2.73
366 382 6.836527 AGTTCCATCTTAGCATGTAGAGTACT 59.163 38.462 0.00 0.00 0.00 2.73
367 383 7.343316 AGTTCCATCTTAGCATGTAGAGTACTT 59.657 37.037 0.00 0.00 0.00 2.24
398 440 3.820689 TGTAAAGCGCATGTTGATCAAC 58.179 40.909 28.10 28.10 41.50 3.18
455 497 2.157942 AGTGGAGGGATATGCCTATGGT 60.158 50.000 16.81 0.00 36.66 3.55
550 592 4.923415 AGGGAATGTGAACTAGGGAAAAG 58.077 43.478 0.00 0.00 0.00 2.27
551 593 4.601857 AGGGAATGTGAACTAGGGAAAAGA 59.398 41.667 0.00 0.00 0.00 2.52
554 596 6.071896 GGGAATGTGAACTAGGGAAAAGAAAG 60.072 42.308 0.00 0.00 0.00 2.62
558 602 7.948034 TGTGAACTAGGGAAAAGAAAGAAAA 57.052 32.000 0.00 0.00 0.00 2.29
561 605 6.040504 TGAACTAGGGAAAAGAAAGAAAAGGC 59.959 38.462 0.00 0.00 0.00 4.35
592 636 5.769367 CATAGGGAAATGATGTGCAAGATG 58.231 41.667 0.00 0.00 0.00 2.90
594 638 4.858850 AGGGAAATGATGTGCAAGATGTA 58.141 39.130 0.00 0.00 0.00 2.29
631 675 5.583854 AGCAGTGACTTAGCAATGATACTTG 59.416 40.000 7.91 0.00 36.04 3.16
653 697 1.398960 GCTTGCACAGTGATCGACAAC 60.399 52.381 4.15 0.00 0.00 3.32
660 705 4.083537 GCACAGTGATCGACAACCATTTAA 60.084 41.667 4.15 0.00 0.00 1.52
665 710 7.807907 ACAGTGATCGACAACCATTTAATTTTC 59.192 33.333 0.00 0.00 0.00 2.29
693 740 9.829507 ACTTATTCAACTCATTCTGAATAGGAG 57.170 33.333 16.26 13.31 42.51 3.69
718 765 5.561725 GCTGAACAGGAAAGCAGTTTCTTAG 60.562 44.000 3.99 0.00 41.72 2.18
818 919 6.922957 TGGCACTTATTTTGACTTAAGCAAAG 59.077 34.615 18.13 12.55 41.33 2.77
821 922 7.116805 GCACTTATTTTGACTTAAGCAAAGCAT 59.883 33.333 18.13 14.42 38.93 3.79
822 923 8.981647 CACTTATTTTGACTTAAGCAAAGCATT 58.018 29.630 18.13 11.23 38.93 3.56
823 924 9.546428 ACTTATTTTGACTTAAGCAAAGCATTT 57.454 25.926 18.13 9.70 40.26 2.32
850 951 9.679661 TTTTTCTTATCATGTATACTCAGCCAA 57.320 29.630 4.17 0.00 0.00 4.52
851 952 9.679661 TTTTCTTATCATGTATACTCAGCCAAA 57.320 29.630 4.17 0.00 0.00 3.28
852 953 8.662781 TTCTTATCATGTATACTCAGCCAAAC 57.337 34.615 4.17 0.00 0.00 2.93
853 954 7.217200 TCTTATCATGTATACTCAGCCAAACC 58.783 38.462 4.17 0.00 0.00 3.27
854 955 4.835284 TCATGTATACTCAGCCAAACCA 57.165 40.909 4.17 0.00 0.00 3.67
855 956 5.172687 TCATGTATACTCAGCCAAACCAA 57.827 39.130 4.17 0.00 0.00 3.67
856 957 5.185454 TCATGTATACTCAGCCAAACCAAG 58.815 41.667 4.17 0.00 0.00 3.61
857 958 3.343617 TGTATACTCAGCCAAACCAAGC 58.656 45.455 4.17 0.00 0.00 4.01
858 959 2.887151 ATACTCAGCCAAACCAAGCT 57.113 45.000 0.00 0.00 40.89 3.74
859 960 4.224147 TGTATACTCAGCCAAACCAAGCTA 59.776 41.667 4.17 0.00 37.18 3.32
860 961 2.191128 ACTCAGCCAAACCAAGCTAG 57.809 50.000 0.00 0.00 37.18 3.42
861 962 1.421646 ACTCAGCCAAACCAAGCTAGT 59.578 47.619 0.00 0.00 37.18 2.57
862 963 2.637872 ACTCAGCCAAACCAAGCTAGTA 59.362 45.455 0.00 0.00 37.18 1.82
863 964 3.003480 CTCAGCCAAACCAAGCTAGTAC 58.997 50.000 0.00 0.00 37.18 2.73
864 965 2.370519 TCAGCCAAACCAAGCTAGTACA 59.629 45.455 0.00 0.00 37.18 2.90
865 966 2.484264 CAGCCAAACCAAGCTAGTACAC 59.516 50.000 0.00 0.00 37.18 2.90
866 967 1.810755 GCCAAACCAAGCTAGTACACC 59.189 52.381 0.00 0.00 0.00 4.16
867 968 2.812613 GCCAAACCAAGCTAGTACACCA 60.813 50.000 0.00 0.00 0.00 4.17
868 969 3.686016 CCAAACCAAGCTAGTACACCAT 58.314 45.455 0.00 0.00 0.00 3.55
869 970 3.689649 CCAAACCAAGCTAGTACACCATC 59.310 47.826 0.00 0.00 0.00 3.51
870 971 3.629142 AACCAAGCTAGTACACCATCC 57.371 47.619 0.00 0.00 0.00 3.51
871 972 2.546899 ACCAAGCTAGTACACCATCCA 58.453 47.619 0.00 0.00 0.00 3.41
872 973 2.501723 ACCAAGCTAGTACACCATCCAG 59.498 50.000 0.00 0.00 0.00 3.86
873 974 2.555199 CAAGCTAGTACACCATCCAGC 58.445 52.381 0.00 0.00 0.00 4.85
874 975 1.123928 AGCTAGTACACCATCCAGCC 58.876 55.000 0.00 0.00 0.00 4.85
875 976 0.830648 GCTAGTACACCATCCAGCCA 59.169 55.000 0.00 0.00 0.00 4.75
876 977 1.202580 GCTAGTACACCATCCAGCCAG 60.203 57.143 0.00 0.00 0.00 4.85
877 978 0.830648 TAGTACACCATCCAGCCAGC 59.169 55.000 0.00 0.00 0.00 4.85
961 1152 5.607477 CAGGGTTACTGTACTCTTGTGAAA 58.393 41.667 0.00 0.00 42.42 2.69
972 1163 7.327975 TGTACTCTTGTGAAACTCAAGAAAGA 58.672 34.615 14.16 5.75 46.58 2.52
988 1179 5.132897 AGAAAGATCGCTGCTTCTATAGG 57.867 43.478 0.00 0.00 0.00 2.57
1125 1318 5.707298 TGCTAGGAATGAGTTCTTTCCAAAG 59.293 40.000 21.77 18.89 46.66 2.77
1128 1321 5.073428 AGGAATGAGTTCTTTCCAAAGTCC 58.927 41.667 21.77 1.95 46.66 3.85
1131 1324 6.396829 AATGAGTTCTTTCCAAAGTCCAAG 57.603 37.500 0.00 0.00 37.31 3.61
1338 1531 2.620115 CCGATGGCTTAATGAACTGCAT 59.380 45.455 0.00 0.00 39.43 3.96
1360 1553 5.243426 TGGTAAGAACAAACACTTTGCTC 57.757 39.130 0.00 0.00 44.39 4.26
1366 1560 5.650543 AGAACAAACACTTTGCTCGATTTT 58.349 33.333 0.00 0.00 44.39 1.82
1367 1561 5.743872 AGAACAAACACTTTGCTCGATTTTC 59.256 36.000 0.00 0.00 44.39 2.29
1368 1562 5.248870 ACAAACACTTTGCTCGATTTTCT 57.751 34.783 0.00 0.00 44.39 2.52
1369 1563 5.650543 ACAAACACTTTGCTCGATTTTCTT 58.349 33.333 0.00 0.00 44.39 2.52
1370 1564 5.743872 ACAAACACTTTGCTCGATTTTCTTC 59.256 36.000 0.00 0.00 44.39 2.87
1441 1679 1.830477 ACAAAGCACAAAAGGCCAAGA 59.170 42.857 5.01 0.00 0.00 3.02
1454 1697 2.888834 GCCAAGAGCCAAACTGAAAA 57.111 45.000 0.00 0.00 34.35 2.29
1455 1698 2.747436 GCCAAGAGCCAAACTGAAAAG 58.253 47.619 0.00 0.00 34.35 2.27
1460 1703 4.926140 AGAGCCAAACTGAAAAGAAAGG 57.074 40.909 0.00 0.00 0.00 3.11
1502 1745 7.573968 AAGAGAACAGCATCAAAACTAAACT 57.426 32.000 0.00 0.00 0.00 2.66
1529 1772 6.326843 AGTTAGACCAGGTCAAAACTTAGACT 59.673 38.462 24.76 10.17 37.58 3.24
1530 1773 4.962155 AGACCAGGTCAAAACTTAGACTG 58.038 43.478 22.31 0.00 34.60 3.51
1531 1774 3.477530 ACCAGGTCAAAACTTAGACTGC 58.522 45.455 0.00 0.00 35.18 4.40
1573 1817 2.684001 ACGTGTCTTGAGTTGGTTGA 57.316 45.000 0.00 0.00 0.00 3.18
1597 1842 1.209504 TCTACTGTTGCATGCCCCTAC 59.790 52.381 16.68 8.68 0.00 3.18
1598 1843 1.210478 CTACTGTTGCATGCCCCTACT 59.790 52.381 16.68 0.00 0.00 2.57
1603 1848 2.841266 TGTTGCATGCCCCTACTAACTA 59.159 45.455 16.68 0.00 0.00 2.24
1610 1855 5.454755 GCATGCCCCTACTAACTAAGATTGA 60.455 44.000 6.36 0.00 0.00 2.57
1612 1857 6.420913 TGCCCCTACTAACTAAGATTGATC 57.579 41.667 0.00 0.00 0.00 2.92
1619 1864 9.522804 CCTACTAACTAAGATTGATCACACTTC 57.477 37.037 14.31 2.43 0.00 3.01
1645 1890 7.484959 CGGTTTGATTTCTTGTTAGCTTTATCC 59.515 37.037 0.00 0.00 0.00 2.59
1663 1909 7.757173 GCTTTATCCTCTTTGTTTGATTCCTTC 59.243 37.037 0.00 0.00 0.00 3.46
1670 1916 5.890985 TCTTTGTTTGATTCCTTCAACCTCA 59.109 36.000 0.00 0.00 43.99 3.86
1671 1917 6.550854 TCTTTGTTTGATTCCTTCAACCTCAT 59.449 34.615 0.00 0.00 43.99 2.90
1807 2053 3.265791 CCTCTTCTTCATGGAAACCTCG 58.734 50.000 0.00 0.00 0.00 4.63
1810 2056 0.984230 TCTTCATGGAAACCTCGGCT 59.016 50.000 0.00 0.00 0.00 5.52
1843 2089 0.882042 ACGTCACAGCAGCTTTCCAG 60.882 55.000 0.00 0.00 0.00 3.86
1847 2093 0.535780 CACAGCAGCTTTCCAGACCA 60.536 55.000 0.00 0.00 0.00 4.02
1930 2176 1.153939 CGAGCTGCAGTCGCTAAGT 60.154 57.895 20.29 0.00 37.96 2.24
1956 2202 3.772853 AAGCCGTGGTGCTGCAGAA 62.773 57.895 20.43 2.96 41.80 3.02
1981 2227 4.988598 CCCAGCGACACAAGCGGT 62.989 66.667 0.00 0.00 40.43 5.68
2215 2462 5.331902 ACACATCGTTATGCTTACATTTGC 58.668 37.500 0.00 0.00 37.74 3.68
2226 2473 3.181514 GCTTACATTTGCCGTCGTTATGT 60.182 43.478 0.00 0.00 34.18 2.29
2241 2488 6.237835 CGTCGTTATGTCTGACATTGCTAAAT 60.238 38.462 26.56 5.14 39.88 1.40
2396 2655 1.901464 CCGAGGGTTGGTTGGTTGG 60.901 63.158 0.00 0.00 0.00 3.77
2397 2656 1.152839 CGAGGGTTGGTTGGTTGGT 60.153 57.895 0.00 0.00 0.00 3.67
2398 2657 0.753848 CGAGGGTTGGTTGGTTGGTT 60.754 55.000 0.00 0.00 0.00 3.67
2399 2658 0.750249 GAGGGTTGGTTGGTTGGTTG 59.250 55.000 0.00 0.00 0.00 3.77
2400 2659 0.689412 AGGGTTGGTTGGTTGGTTGG 60.689 55.000 0.00 0.00 0.00 3.77
2401 2660 0.978667 GGGTTGGTTGGTTGGTTGGT 60.979 55.000 0.00 0.00 0.00 3.67
2402 2661 0.906066 GGTTGGTTGGTTGGTTGGTT 59.094 50.000 0.00 0.00 0.00 3.67
2403 2662 1.406205 GGTTGGTTGGTTGGTTGGTTG 60.406 52.381 0.00 0.00 0.00 3.77
2404 2663 1.276705 GTTGGTTGGTTGGTTGGTTGT 59.723 47.619 0.00 0.00 0.00 3.32
2405 2664 2.496470 GTTGGTTGGTTGGTTGGTTGTA 59.504 45.455 0.00 0.00 0.00 2.41
2406 2665 3.033659 TGGTTGGTTGGTTGGTTGTAT 57.966 42.857 0.00 0.00 0.00 2.29
2407 2666 2.695666 TGGTTGGTTGGTTGGTTGTATG 59.304 45.455 0.00 0.00 0.00 2.39
2414 2673 5.363868 TGGTTGGTTGGTTGTATGATGAAAA 59.636 36.000 0.00 0.00 0.00 2.29
2420 2679 6.460953 GGTTGGTTGTATGATGAAAAGTGTGT 60.461 38.462 0.00 0.00 0.00 3.72
2435 2694 3.909732 AGTGTGTTTTTCCATTGGAGGA 58.090 40.909 5.36 0.00 35.41 3.71
2466 2725 5.586243 CAGTGTATAGTTCCATTGGTCCTTG 59.414 44.000 1.86 0.00 0.00 3.61
2467 2726 4.335594 GTGTATAGTTCCATTGGTCCTTGC 59.664 45.833 1.86 0.00 0.00 4.01
2510 2769 7.660208 ACGTGATTGTGTAAAGAGGAAAACTAT 59.340 33.333 0.00 0.00 0.00 2.12
2518 2777 7.444487 GTGTAAAGAGGAAAACTATTGTCACCT 59.556 37.037 0.00 0.00 33.15 4.00
2534 2793 1.446792 CCTACTGGCTGCTGTGTCG 60.447 63.158 0.00 0.00 0.00 4.35
2536 2795 0.734253 CTACTGGCTGCTGTGTCGAC 60.734 60.000 9.11 9.11 0.00 4.20
2555 2814 3.539604 GACTCATTCCACATCCTTCTGG 58.460 50.000 0.00 0.00 0.00 3.86
2562 2824 0.471617 CACATCCTTCTGGCCCTAGG 59.528 60.000 0.06 0.06 0.00 3.02
2563 2825 0.695803 ACATCCTTCTGGCCCTAGGG 60.696 60.000 24.89 24.89 38.57 3.53
2588 2850 3.131396 CACGCTTTTACTGTTCTCAGGT 58.869 45.455 0.47 0.00 45.14 4.00
2590 2852 2.408704 CGCTTTTACTGTTCTCAGGTCG 59.591 50.000 0.47 0.00 45.14 4.79
2597 2859 1.286260 GTTCTCAGGTCGTCACGCT 59.714 57.895 0.00 0.00 0.00 5.07
2608 2870 2.979676 TCACGCTTGCTTGCCCTG 60.980 61.111 0.00 0.00 0.00 4.45
2616 2878 1.679680 CTTGCTTGCCCTGATATGGTG 59.320 52.381 0.00 0.00 0.00 4.17
2617 2879 0.106569 TGCTTGCCCTGATATGGTGG 60.107 55.000 0.00 0.00 0.00 4.61
2619 2881 1.202976 GCTTGCCCTGATATGGTGGAT 60.203 52.381 0.00 0.00 0.00 3.41
2623 2885 2.785269 TGCCCTGATATGGTGGATCTTT 59.215 45.455 0.00 0.00 0.00 2.52
2626 2888 3.152341 CCTGATATGGTGGATCTTTGGC 58.848 50.000 0.00 0.00 0.00 4.52
2628 2890 2.785269 TGATATGGTGGATCTTTGGCCT 59.215 45.455 3.32 0.00 0.00 5.19
2629 2891 2.734755 TATGGTGGATCTTTGGCCTG 57.265 50.000 3.32 0.00 0.00 4.85
2630 2892 0.685458 ATGGTGGATCTTTGGCCTGC 60.685 55.000 3.32 0.00 0.00 4.85
2635 2897 1.657751 GGATCTTTGGCCTGCGGTTC 61.658 60.000 3.32 0.00 0.00 3.62
2643 2909 0.036294 GGCCTGCGGTTCTAAACTCT 60.036 55.000 0.00 0.00 0.00 3.24
2644 2910 1.610886 GGCCTGCGGTTCTAAACTCTT 60.611 52.381 0.00 0.00 0.00 2.85
2645 2911 2.152016 GCCTGCGGTTCTAAACTCTTT 58.848 47.619 0.00 0.00 0.00 2.52
2646 2912 2.552743 GCCTGCGGTTCTAAACTCTTTT 59.447 45.455 0.00 0.00 0.00 2.27
2649 2915 2.292292 TGCGGTTCTAAACTCTTTTGCC 59.708 45.455 0.00 0.00 0.00 4.52
2653 2919 4.617959 GGTTCTAAACTCTTTTGCCAACC 58.382 43.478 0.00 0.00 0.00 3.77
2655 2921 5.533528 GGTTCTAAACTCTTTTGCCAACCTA 59.466 40.000 0.00 0.00 31.90 3.08
2664 2930 0.605319 TTGCCAACCTAAGCTCGGTG 60.605 55.000 8.29 0.00 34.33 4.94
2665 2931 1.295423 GCCAACCTAAGCTCGGTGA 59.705 57.895 8.29 0.00 34.33 4.02
2674 2940 2.125512 GCTCGGTGAATCCACGCT 60.126 61.111 0.00 0.00 44.09 5.07
2681 2947 1.339929 GGTGAATCCACGCTGGTTTTT 59.660 47.619 4.33 0.00 44.09 1.94
2682 2948 2.554893 GGTGAATCCACGCTGGTTTTTA 59.445 45.455 4.33 0.00 44.09 1.52
2684 2950 2.554893 TGAATCCACGCTGGTTTTTACC 59.445 45.455 4.33 0.00 39.03 2.85
2685 2951 1.541379 ATCCACGCTGGTTTTTACCC 58.459 50.000 4.33 0.00 39.03 3.69
2686 2952 0.183014 TCCACGCTGGTTTTTACCCA 59.817 50.000 4.33 0.00 39.03 4.51
2688 2954 0.312729 CACGCTGGTTTTTACCCACC 59.687 55.000 0.00 0.00 0.00 4.61
2689 2955 0.106619 ACGCTGGTTTTTACCCACCA 60.107 50.000 0.00 0.00 40.98 4.17
2693 2959 2.830651 TGGTTTTTACCCACCAGTGT 57.169 45.000 0.00 0.00 38.20 3.55
2733 3011 6.313519 ACTGACCTGGCAGAAAATAATCTA 57.686 37.500 17.94 0.00 39.20 1.98
2734 3012 6.904626 ACTGACCTGGCAGAAAATAATCTAT 58.095 36.000 17.94 0.00 39.20 1.98
2759 3037 5.585820 TTTTTCTTTTACGTTCAGGCCTT 57.414 34.783 0.00 0.00 0.00 4.35
2760 3038 5.585820 TTTTCTTTTACGTTCAGGCCTTT 57.414 34.783 0.00 0.00 0.00 3.11
2761 3039 5.585820 TTTCTTTTACGTTCAGGCCTTTT 57.414 34.783 0.00 0.00 0.00 2.27
2762 3040 5.585820 TTCTTTTACGTTCAGGCCTTTTT 57.414 34.783 0.00 0.00 0.00 1.94
2785 3063 7.737972 TTTTGTTTCATAGGAAATGAGACGA 57.262 32.000 5.77 0.83 44.32 4.20
2786 3064 7.921786 TTTGTTTCATAGGAAATGAGACGAT 57.078 32.000 5.77 0.00 44.32 3.73
2787 3065 9.443323 TTTTGTTTCATAGGAAATGAGACGATA 57.557 29.630 5.77 0.00 44.32 2.92
2788 3066 9.443323 TTTGTTTCATAGGAAATGAGACGATAA 57.557 29.630 5.77 0.00 44.32 1.75
2789 3067 9.613428 TTGTTTCATAGGAAATGAGACGATAAT 57.387 29.630 5.77 0.00 44.32 1.28
2823 3101 9.206690 TCTCAATTCCTACAGAGAAAGATATGT 57.793 33.333 0.00 0.00 34.45 2.29
2824 3102 9.474920 CTCAATTCCTACAGAGAAAGATATGTC 57.525 37.037 0.00 0.00 0.00 3.06
2825 3103 8.981659 TCAATTCCTACAGAGAAAGATATGTCA 58.018 33.333 0.00 0.00 0.00 3.58
2826 3104 9.775854 CAATTCCTACAGAGAAAGATATGTCAT 57.224 33.333 0.00 0.00 0.00 3.06
2829 3107 9.605275 TTCCTACAGAGAAAGATATGTCATTTG 57.395 33.333 0.00 0.00 0.00 2.32
2830 3108 8.981659 TCCTACAGAGAAAGATATGTCATTTGA 58.018 33.333 0.00 0.00 0.00 2.69
2831 3109 9.775854 CCTACAGAGAAAGATATGTCATTTGAT 57.224 33.333 0.00 0.00 0.00 2.57
2833 3111 7.928103 ACAGAGAAAGATATGTCATTTGATGC 58.072 34.615 0.00 0.00 0.00 3.91
2834 3112 7.555195 ACAGAGAAAGATATGTCATTTGATGCA 59.445 33.333 0.00 0.00 0.00 3.96
2835 3113 8.568794 CAGAGAAAGATATGTCATTTGATGCAT 58.431 33.333 0.00 0.00 33.67 3.96
2836 3114 9.788889 AGAGAAAGATATGTCATTTGATGCATA 57.211 29.630 0.00 7.18 35.42 3.14
2847 3125 9.346005 TGTCATTTGATGCATATGATAGAAACT 57.654 29.630 12.57 0.00 35.18 2.66
2895 3173 9.913451 TGTTTTATTTTTCTTTGAAATGCGAAG 57.087 25.926 0.00 0.00 39.05 3.79
2896 3174 9.368921 GTTTTATTTTTCTTTGAAATGCGAAGG 57.631 29.630 0.00 0.00 38.36 3.46
2897 3175 7.650834 TTATTTTTCTTTGAAATGCGAAGGG 57.349 32.000 0.00 0.00 38.36 3.95
2898 3176 4.664150 TTTTCTTTGAAATGCGAAGGGT 57.336 36.364 0.00 0.00 38.36 4.34
2899 3177 4.664150 TTTCTTTGAAATGCGAAGGGTT 57.336 36.364 0.00 0.00 38.36 4.11
2900 3178 5.776173 TTTCTTTGAAATGCGAAGGGTTA 57.224 34.783 0.00 0.00 38.36 2.85
2901 3179 5.371115 TTCTTTGAAATGCGAAGGGTTAG 57.629 39.130 0.00 0.00 38.36 2.34
2902 3180 4.394729 TCTTTGAAATGCGAAGGGTTAGT 58.605 39.130 0.00 0.00 38.36 2.24
2903 3181 4.825085 TCTTTGAAATGCGAAGGGTTAGTT 59.175 37.500 0.00 0.00 38.36 2.24
2904 3182 5.300792 TCTTTGAAATGCGAAGGGTTAGTTT 59.699 36.000 0.00 0.00 38.36 2.66
2905 3183 4.759516 TGAAATGCGAAGGGTTAGTTTC 57.240 40.909 0.00 0.00 0.00 2.78
2906 3184 4.394729 TGAAATGCGAAGGGTTAGTTTCT 58.605 39.130 0.00 0.00 0.00 2.52
2907 3185 5.553123 TGAAATGCGAAGGGTTAGTTTCTA 58.447 37.500 0.00 0.00 0.00 2.10
2908 3186 6.177610 TGAAATGCGAAGGGTTAGTTTCTAT 58.822 36.000 0.00 0.00 0.00 1.98
2909 3187 6.315393 TGAAATGCGAAGGGTTAGTTTCTATC 59.685 38.462 0.00 0.00 0.00 2.08
2910 3188 4.133013 TGCGAAGGGTTAGTTTCTATCC 57.867 45.455 0.00 0.00 0.00 2.59
2911 3189 3.773119 TGCGAAGGGTTAGTTTCTATCCT 59.227 43.478 0.00 0.00 0.00 3.24
2912 3190 4.957954 TGCGAAGGGTTAGTTTCTATCCTA 59.042 41.667 0.00 0.00 0.00 2.94
2913 3191 5.163478 TGCGAAGGGTTAGTTTCTATCCTAC 60.163 44.000 0.00 0.00 0.00 3.18
2914 3192 5.163478 GCGAAGGGTTAGTTTCTATCCTACA 60.163 44.000 0.00 0.00 0.00 2.74
2915 3193 6.462628 GCGAAGGGTTAGTTTCTATCCTACAT 60.463 42.308 0.00 0.00 0.00 2.29
2916 3194 7.146648 CGAAGGGTTAGTTTCTATCCTACATC 58.853 42.308 4.56 0.00 0.00 3.06
2917 3195 6.997942 AGGGTTAGTTTCTATCCTACATCC 57.002 41.667 4.56 0.00 0.00 3.51
2918 3196 6.449956 AGGGTTAGTTTCTATCCTACATCCA 58.550 40.000 4.56 0.00 0.00 3.41
2919 3197 6.906901 AGGGTTAGTTTCTATCCTACATCCAA 59.093 38.462 4.56 0.00 0.00 3.53
2920 3198 7.404980 AGGGTTAGTTTCTATCCTACATCCAAA 59.595 37.037 4.56 0.00 0.00 3.28
2921 3199 8.218488 GGGTTAGTTTCTATCCTACATCCAAAT 58.782 37.037 4.56 0.00 0.00 2.32
2930 3208 9.837681 TCTATCCTACATCCAAATAGTAATCCA 57.162 33.333 0.00 0.00 0.00 3.41
2933 3211 9.965902 ATCCTACATCCAAATAGTAATCCATTC 57.034 33.333 0.00 0.00 0.00 2.67
2934 3212 8.383175 TCCTACATCCAAATAGTAATCCATTCC 58.617 37.037 0.00 0.00 0.00 3.01
2935 3213 8.163408 CCTACATCCAAATAGTAATCCATTCCA 58.837 37.037 0.00 0.00 0.00 3.53
2936 3214 9.573166 CTACATCCAAATAGTAATCCATTCCAA 57.427 33.333 0.00 0.00 0.00 3.53
2937 3215 8.237811 ACATCCAAATAGTAATCCATTCCAAC 57.762 34.615 0.00 0.00 0.00 3.77
2938 3216 7.838696 ACATCCAAATAGTAATCCATTCCAACA 59.161 33.333 0.00 0.00 0.00 3.33
2939 3217 8.694540 CATCCAAATAGTAATCCATTCCAACAA 58.305 33.333 0.00 0.00 0.00 2.83
2940 3218 8.657387 TCCAAATAGTAATCCATTCCAACAAA 57.343 30.769 0.00 0.00 0.00 2.83
2941 3219 8.527810 TCCAAATAGTAATCCATTCCAACAAAC 58.472 33.333 0.00 0.00 0.00 2.93
2942 3220 8.310382 CCAAATAGTAATCCATTCCAACAAACA 58.690 33.333 0.00 0.00 0.00 2.83
2943 3221 9.703892 CAAATAGTAATCCATTCCAACAAACAA 57.296 29.630 0.00 0.00 0.00 2.83
2947 3225 8.606040 AGTAATCCATTCCAACAAACAAAATG 57.394 30.769 0.00 0.00 0.00 2.32
2948 3226 6.880942 AATCCATTCCAACAAACAAAATGG 57.119 33.333 6.16 6.16 44.99 3.16
2957 3235 8.246871 TTCCAACAAACAAAATGGAAAAATTCC 58.753 29.630 3.73 2.12 46.12 3.01
2972 3250 8.439993 GGAAAAATTCCTATCCTCTACAGTTC 57.560 38.462 1.86 0.00 46.57 3.01
2973 3251 7.499563 GGAAAAATTCCTATCCTCTACAGTTCC 59.500 40.741 1.86 0.00 46.57 3.62
2974 3252 7.757242 AAAATTCCTATCCTCTACAGTTCCT 57.243 36.000 0.00 0.00 0.00 3.36
2975 3253 8.855804 AAAATTCCTATCCTCTACAGTTCCTA 57.144 34.615 0.00 0.00 0.00 2.94
2976 3254 9.453830 AAAATTCCTATCCTCTACAGTTCCTAT 57.546 33.333 0.00 0.00 0.00 2.57
2980 3258 9.947189 TTCCTATCCTCTACAGTTCCTATAAAA 57.053 33.333 0.00 0.00 0.00 1.52
2987 3265 9.892130 CCTCTACAGTTCCTATAAAATTTCTGT 57.108 33.333 9.13 9.13 38.26 3.41
2992 3270 8.793592 ACAGTTCCTATAAAATTTCTGTGAACC 58.206 33.333 12.83 2.33 34.36 3.62
2993 3271 8.792633 CAGTTCCTATAAAATTTCTGTGAACCA 58.207 33.333 12.83 0.00 32.17 3.67
2994 3272 9.362151 AGTTCCTATAAAATTTCTGTGAACCAA 57.638 29.630 12.83 0.00 32.17 3.67
2995 3273 9.974980 GTTCCTATAAAATTTCTGTGAACCAAA 57.025 29.630 0.00 0.00 0.00 3.28
2997 3275 8.303876 TCCTATAAAATTTCTGTGAACCAAAGC 58.696 33.333 0.00 0.00 0.00 3.51
2998 3276 8.087750 CCTATAAAATTTCTGTGAACCAAAGCA 58.912 33.333 0.00 0.00 0.00 3.91
2999 3277 7.951530 ATAAAATTTCTGTGAACCAAAGCAG 57.048 32.000 0.00 0.00 0.00 4.24
3000 3278 4.326504 AATTTCTGTGAACCAAAGCAGG 57.673 40.909 0.00 0.00 0.00 4.85
3001 3279 1.032014 TTCTGTGAACCAAAGCAGGC 58.968 50.000 0.00 0.00 0.00 4.85
3002 3280 0.823356 TCTGTGAACCAAAGCAGGCC 60.823 55.000 0.00 0.00 0.00 5.19
3003 3281 0.825010 CTGTGAACCAAAGCAGGCCT 60.825 55.000 0.00 0.00 0.00 5.19
3004 3282 1.108727 TGTGAACCAAAGCAGGCCTG 61.109 55.000 29.34 29.34 0.00 4.85
3015 3293 1.002134 CAGGCCTGGTACTTGGGTG 60.002 63.158 26.14 0.00 0.00 4.61
3019 3297 0.328258 GCCTGGTACTTGGGTGACAT 59.672 55.000 0.00 0.00 0.00 3.06
3043 3321 1.713937 TTGCCATTACCTGCGCATCG 61.714 55.000 12.24 6.84 33.11 3.84
3063 3341 4.307432 TCGCTGTTGAAGAACTCCTAAAG 58.693 43.478 0.00 0.00 32.79 1.85
3064 3342 4.058817 CGCTGTTGAAGAACTCCTAAAGT 58.941 43.478 0.00 0.00 41.10 2.66
3080 3358 1.416243 AAGTTGTGTGGGTACGAGGA 58.584 50.000 0.00 0.00 0.00 3.71
3096 3374 2.416162 CGAGGACTCTCTAACCAAGTGC 60.416 54.545 0.00 0.00 37.86 4.40
3098 3376 2.972713 AGGACTCTCTAACCAAGTGCAA 59.027 45.455 0.00 0.00 34.21 4.08
3100 3378 2.731976 GACTCTCTAACCAAGTGCAACG 59.268 50.000 0.00 0.00 45.86 4.10
3113 3391 4.111375 AGTGCAACGTAACTAGATCTGG 57.889 45.455 5.18 4.69 45.86 3.86
3157 3435 0.904865 AGATGGAGCCGGTGACTTGA 60.905 55.000 1.90 0.00 0.00 3.02
3160 3440 1.079750 GGAGCCGGTGACTTGAGAC 60.080 63.158 1.90 0.00 0.00 3.36
3168 3448 2.724690 CGGTGACTTGAGACTTTGTACG 59.275 50.000 0.00 0.00 0.00 3.67
3226 3511 6.183360 CCGACACATTATAAAGCAGGGAAAAT 60.183 38.462 0.00 0.00 0.00 1.82
3227 3512 6.692681 CGACACATTATAAAGCAGGGAAAATG 59.307 38.462 0.00 0.00 0.00 2.32
3267 3558 2.544685 CGGAACAGTGTCATCTCATCC 58.455 52.381 0.00 0.00 0.00 3.51
3271 3570 4.141756 GGAACAGTGTCATCTCATCCTCAT 60.142 45.833 0.00 0.00 0.00 2.90
3294 3595 5.872963 TCAGATGATGAGGACATTATTGGG 58.127 41.667 0.00 0.00 36.82 4.12
3296 3597 6.558394 TCAGATGATGAGGACATTATTGGGTA 59.442 38.462 0.00 0.00 36.82 3.69
3302 3603 5.793817 TGAGGACATTATTGGGTATCATCG 58.206 41.667 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 7.025620 AGACAATAGTCCCCTTGATATACCAT 58.974 38.462 0.00 0.00 46.15 3.55
115 116 5.456763 GCCAATAGACAATAGTCCCCTTGAT 60.457 44.000 0.00 0.00 46.15 2.57
116 117 4.141482 GCCAATAGACAATAGTCCCCTTGA 60.141 45.833 0.00 0.00 46.15 3.02
117 118 4.137543 GCCAATAGACAATAGTCCCCTTG 58.862 47.826 0.00 0.00 46.15 3.61
118 119 3.785887 TGCCAATAGACAATAGTCCCCTT 59.214 43.478 0.00 0.00 46.15 3.95
120 121 3.496870 CCTGCCAATAGACAATAGTCCCC 60.497 52.174 0.00 0.00 46.15 4.81
123 124 7.391148 TTTTTCCTGCCAATAGACAATAGTC 57.609 36.000 0.00 0.00 45.31 2.59
185 186 5.172687 TCACTGTGCCAGGATTACATTAA 57.827 39.130 2.12 0.00 35.51 1.40
186 187 4.835284 TCACTGTGCCAGGATTACATTA 57.165 40.909 2.12 0.00 35.51 1.90
191 198 2.368439 GCATTCACTGTGCCAGGATTA 58.632 47.619 2.12 0.00 36.61 1.75
206 213 2.827921 ACTTCCCATTCACAAGGCATTC 59.172 45.455 0.00 0.00 0.00 2.67
207 214 2.893424 ACTTCCCATTCACAAGGCATT 58.107 42.857 0.00 0.00 0.00 3.56
209 216 2.158475 AGAACTTCCCATTCACAAGGCA 60.158 45.455 0.00 0.00 0.00 4.75
210 217 2.519013 AGAACTTCCCATTCACAAGGC 58.481 47.619 0.00 0.00 0.00 4.35
211 218 4.829492 AGAAAGAACTTCCCATTCACAAGG 59.171 41.667 0.00 0.00 34.21 3.61
212 219 5.532406 TGAGAAAGAACTTCCCATTCACAAG 59.468 40.000 0.00 0.00 34.21 3.16
217 233 5.010012 TGCTTTGAGAAAGAACTTCCCATTC 59.990 40.000 0.16 0.00 41.02 2.67
229 245 4.800471 GTGACTTGGTTTGCTTTGAGAAAG 59.200 41.667 0.00 0.00 41.46 2.62
278 294 0.598065 GTACCCAAAGCAACAGCCAG 59.402 55.000 0.00 0.00 0.00 4.85
329 345 9.094578 TGCTAAGATGGAACTTAGATTAGCTAT 57.905 33.333 16.34 0.00 46.97 2.97
337 353 7.561722 ACTCTACATGCTAAGATGGAACTTAGA 59.438 37.037 16.34 5.38 46.97 2.10
338 354 7.721402 ACTCTACATGCTAAGATGGAACTTAG 58.279 38.462 0.00 0.00 46.82 2.18
339 355 7.661536 ACTCTACATGCTAAGATGGAACTTA 57.338 36.000 0.00 0.00 0.00 2.24
340 356 6.552445 ACTCTACATGCTAAGATGGAACTT 57.448 37.500 0.00 0.00 0.00 2.66
341 357 6.836527 AGTACTCTACATGCTAAGATGGAACT 59.163 38.462 0.00 0.00 0.00 3.01
342 358 7.045126 AGTACTCTACATGCTAAGATGGAAC 57.955 40.000 0.00 0.00 0.00 3.62
343 359 7.661536 AAGTACTCTACATGCTAAGATGGAA 57.338 36.000 0.00 0.00 0.00 3.53
344 360 7.561722 AGAAAGTACTCTACATGCTAAGATGGA 59.438 37.037 0.00 0.00 0.00 3.41
345 361 7.721402 AGAAAGTACTCTACATGCTAAGATGG 58.279 38.462 0.00 0.00 0.00 3.51
348 364 9.409918 ACATAGAAAGTACTCTACATGCTAAGA 57.590 33.333 0.00 0.00 30.76 2.10
351 367 9.409918 AGAACATAGAAAGTACTCTACATGCTA 57.590 33.333 0.00 0.00 30.76 3.49
352 368 8.194104 CAGAACATAGAAAGTACTCTACATGCT 58.806 37.037 0.00 0.00 30.76 3.79
353 369 7.976734 ACAGAACATAGAAAGTACTCTACATGC 59.023 37.037 0.00 0.00 30.76 4.06
359 375 7.755822 CGCTTTACAGAACATAGAAAGTACTCT 59.244 37.037 0.00 0.00 31.24 3.24
360 376 7.462988 GCGCTTTACAGAACATAGAAAGTACTC 60.463 40.741 0.00 0.00 31.24 2.59
361 377 6.310711 GCGCTTTACAGAACATAGAAAGTACT 59.689 38.462 0.00 0.00 31.24 2.73
362 378 6.090358 TGCGCTTTACAGAACATAGAAAGTAC 59.910 38.462 9.73 0.00 31.24 2.73
363 379 6.160684 TGCGCTTTACAGAACATAGAAAGTA 58.839 36.000 9.73 0.00 31.24 2.24
364 380 4.994852 TGCGCTTTACAGAACATAGAAAGT 59.005 37.500 9.73 0.00 31.24 2.66
365 381 5.530519 TGCGCTTTACAGAACATAGAAAG 57.469 39.130 9.73 0.00 0.00 2.62
366 382 5.411361 ACATGCGCTTTACAGAACATAGAAA 59.589 36.000 9.73 0.00 0.00 2.52
367 383 4.935205 ACATGCGCTTTACAGAACATAGAA 59.065 37.500 9.73 0.00 0.00 2.10
398 440 6.777091 TCAAATGACCACATAAATCCCCATAG 59.223 38.462 0.00 0.00 35.50 2.23
550 592 3.665745 TGCAGAATGGCCTTTTCTTTC 57.334 42.857 16.12 12.25 35.86 2.62
551 593 4.161001 CCTATGCAGAATGGCCTTTTCTTT 59.839 41.667 16.12 8.91 35.86 2.52
554 596 2.363359 CCCTATGCAGAATGGCCTTTTC 59.637 50.000 3.32 7.63 35.86 2.29
558 602 1.225373 TTCCCTATGCAGAATGGCCT 58.775 50.000 3.32 0.00 35.86 5.19
561 605 4.831155 ACATCATTTCCCTATGCAGAATGG 59.169 41.667 0.00 0.00 35.86 3.16
592 636 8.989653 AAGTCACTGCTTCTATAGAGTTTTAC 57.010 34.615 2.02 0.00 0.00 2.01
594 638 7.762159 GCTAAGTCACTGCTTCTATAGAGTTTT 59.238 37.037 2.02 0.00 0.00 2.43
631 675 1.375908 TCGATCACTGTGCAAGCCC 60.376 57.895 2.12 0.00 0.00 5.19
686 731 3.623453 GCTTTCCTGTTCAGCCTCCTATT 60.623 47.826 0.00 0.00 0.00 1.73
693 740 1.322442 AACTGCTTTCCTGTTCAGCC 58.678 50.000 0.00 0.00 30.83 4.85
718 765 9.712305 AATAGTTCTACACCTGATTATACATGC 57.288 33.333 0.00 0.00 0.00 4.06
793 894 6.398234 TTGCTTAAGTCAAAATAAGTGCCA 57.602 33.333 4.02 0.00 32.82 4.92
795 896 6.420604 TGCTTTGCTTAAGTCAAAATAAGTGC 59.579 34.615 18.94 17.45 36.19 4.40
797 898 9.546428 AAATGCTTTGCTTAAGTCAAAATAAGT 57.454 25.926 18.94 9.30 36.19 2.24
824 925 9.679661 TTGGCTGAGTATACATGATAAGAAAAA 57.320 29.630 5.50 0.00 0.00 1.94
825 926 9.679661 TTTGGCTGAGTATACATGATAAGAAAA 57.320 29.630 5.50 0.00 0.00 2.29
848 949 3.689649 GGATGGTGTACTAGCTTGGTTTG 59.310 47.826 0.00 0.00 0.00 2.93
849 950 3.329520 TGGATGGTGTACTAGCTTGGTTT 59.670 43.478 0.00 0.00 0.00 3.27
850 951 2.910319 TGGATGGTGTACTAGCTTGGTT 59.090 45.455 0.00 0.00 0.00 3.67
851 952 2.501723 CTGGATGGTGTACTAGCTTGGT 59.498 50.000 0.00 0.00 0.00 3.67
852 953 2.743183 GCTGGATGGTGTACTAGCTTGG 60.743 54.545 0.00 0.00 37.57 3.61
853 954 2.555199 GCTGGATGGTGTACTAGCTTG 58.445 52.381 0.00 0.00 37.57 4.01
854 955 1.486726 GGCTGGATGGTGTACTAGCTT 59.513 52.381 0.00 0.00 39.80 3.74
855 956 1.123928 GGCTGGATGGTGTACTAGCT 58.876 55.000 0.00 0.00 39.80 3.32
856 957 0.830648 TGGCTGGATGGTGTACTAGC 59.169 55.000 0.00 0.00 39.32 3.42
857 958 1.202580 GCTGGCTGGATGGTGTACTAG 60.203 57.143 0.00 0.00 0.00 2.57
858 959 0.830648 GCTGGCTGGATGGTGTACTA 59.169 55.000 0.00 0.00 0.00 1.82
859 960 0.911525 AGCTGGCTGGATGGTGTACT 60.912 55.000 0.00 0.00 0.00 2.73
860 961 0.745845 CAGCTGGCTGGATGGTGTAC 60.746 60.000 14.11 0.00 40.17 2.90
861 962 1.603842 CAGCTGGCTGGATGGTGTA 59.396 57.895 14.11 0.00 40.17 2.90
862 963 2.353958 CAGCTGGCTGGATGGTGT 59.646 61.111 14.11 0.00 40.17 4.16
863 964 3.138798 GCAGCTGGCTGGATGGTG 61.139 66.667 21.76 0.00 43.77 4.17
864 965 3.640257 CTGCAGCTGGCTGGATGGT 62.640 63.158 21.76 0.00 43.20 3.55
865 966 2.829003 CTGCAGCTGGCTGGATGG 60.829 66.667 21.76 6.80 43.20 3.51
866 967 1.378119 TTCTGCAGCTGGCTGGATG 60.378 57.895 21.76 13.61 43.20 3.51
867 968 1.378250 GTTCTGCAGCTGGCTGGAT 60.378 57.895 21.76 0.00 43.20 3.41
868 969 1.194121 TAGTTCTGCAGCTGGCTGGA 61.194 55.000 21.76 18.64 45.15 3.86
869 970 0.107312 ATAGTTCTGCAGCTGGCTGG 60.107 55.000 21.76 8.31 45.15 4.85
870 971 1.747709 AATAGTTCTGCAGCTGGCTG 58.252 50.000 17.12 17.16 45.15 4.85
871 972 2.363683 GAAATAGTTCTGCAGCTGGCT 58.636 47.619 17.12 6.62 45.15 4.75
872 973 1.403323 GGAAATAGTTCTGCAGCTGGC 59.597 52.381 17.12 8.54 45.13 4.85
873 974 2.996631 AGGAAATAGTTCTGCAGCTGG 58.003 47.619 17.12 0.00 33.92 4.85
874 975 6.317140 TGATAAAGGAAATAGTTCTGCAGCTG 59.683 38.462 10.11 10.11 33.92 4.24
875 976 6.418101 TGATAAAGGAAATAGTTCTGCAGCT 58.582 36.000 9.47 3.71 33.92 4.24
876 977 6.683974 TGATAAAGGAAATAGTTCTGCAGC 57.316 37.500 9.47 0.00 33.92 5.25
877 978 8.896744 TCATTGATAAAGGAAATAGTTCTGCAG 58.103 33.333 7.63 7.63 33.92 4.41
961 1152 2.758736 AGCAGCGATCTTTCTTGAGT 57.241 45.000 0.00 0.00 0.00 3.41
972 1163 2.700897 ACAACCCTATAGAAGCAGCGAT 59.299 45.455 0.00 0.00 0.00 4.58
988 1179 3.514645 CATAAGCCATTCTGCAACAACC 58.485 45.455 0.00 0.00 0.00 3.77
1125 1318 3.600388 CACTCCTATTGTGGACTTGGAC 58.400 50.000 0.00 0.00 31.94 4.02
1338 1531 4.201871 CGAGCAAAGTGTTTGTTCTTACCA 60.202 41.667 12.51 0.00 45.22 3.25
1421 1659 1.830477 TCTTGGCCTTTTGTGCTTTGT 59.170 42.857 3.32 0.00 0.00 2.83
1441 1679 5.675684 TTTCCTTTCTTTTCAGTTTGGCT 57.324 34.783 0.00 0.00 0.00 4.75
1477 1720 8.000780 AGTTTAGTTTTGATGCTGTTCTCTTT 57.999 30.769 0.00 0.00 0.00 2.52
1502 1745 8.146412 GTCTAAGTTTTGACCTGGTCTAACTAA 58.854 37.037 30.26 21.73 37.25 2.24
1511 1754 2.480419 CGCAGTCTAAGTTTTGACCTGG 59.520 50.000 0.00 0.00 34.21 4.45
1529 1772 4.710167 ATCAGCTGCACTGCCGCA 62.710 61.111 18.32 0.45 46.76 5.69
1530 1773 4.175489 CATCAGCTGCACTGCCGC 62.175 66.667 9.47 9.26 46.76 6.53
1556 1800 4.576463 AGACAATCAACCAACTCAAGACAC 59.424 41.667 0.00 0.00 0.00 3.67
1573 1817 2.094675 GGGCATGCAACAGTAGACAAT 58.905 47.619 21.36 0.00 0.00 2.71
1597 1842 7.036220 ACCGAAGTGTGATCAATCTTAGTTAG 58.964 38.462 11.85 4.92 0.00 2.34
1598 1843 6.931838 ACCGAAGTGTGATCAATCTTAGTTA 58.068 36.000 11.85 0.00 0.00 2.24
1603 1848 5.063204 TCAAACCGAAGTGTGATCAATCTT 58.937 37.500 11.75 11.75 35.19 2.40
1612 1857 4.920376 ACAAGAAATCAAACCGAAGTGTG 58.080 39.130 0.00 0.00 31.84 3.82
1619 1864 7.484959 GGATAAAGCTAACAAGAAATCAAACCG 59.515 37.037 0.00 0.00 0.00 4.44
1663 1909 3.310774 CGGAATGAGCTGTTATGAGGTTG 59.689 47.826 0.00 0.00 0.00 3.77
1670 1916 4.406648 TCATGTCGGAATGAGCTGTTAT 57.593 40.909 0.00 0.00 32.75 1.89
1671 1917 3.885724 TCATGTCGGAATGAGCTGTTA 57.114 42.857 0.00 0.00 32.75 2.41
1780 2026 0.106819 CCATGAAGAAGAGGCCCTGG 60.107 60.000 0.00 0.00 0.00 4.45
1807 2053 1.153997 GTTCGACGAGTCCAGAGCC 60.154 63.158 0.00 0.00 0.00 4.70
1810 2056 0.881600 TGACGTTCGACGAGTCCAGA 60.882 55.000 12.95 0.00 46.05 3.86
1843 2089 5.278758 GCTGTAGATCTCCTTGACTATGGTC 60.279 48.000 0.00 1.56 42.42 4.02
1847 2093 7.237982 AGTATGCTGTAGATCTCCTTGACTAT 58.762 38.462 0.00 0.00 0.00 2.12
2215 2462 2.029244 GCAATGTCAGACATAACGACGG 59.971 50.000 16.71 2.57 37.97 4.79
2226 2473 6.631971 TCACACAAATTTAGCAATGTCAGA 57.368 33.333 0.00 0.00 0.00 3.27
2241 2488 6.605594 GGACCCCTAAATATTCATCACACAAA 59.394 38.462 0.00 0.00 0.00 2.83
2263 2520 1.673033 CGTGGTCATCAAGTCCAGGAC 60.673 57.143 12.25 12.25 41.74 3.85
2314 2571 1.000955 ACTAACCGGATCCGCATCATC 59.999 52.381 29.12 0.00 38.24 2.92
2396 2655 6.503524 ACACACTTTTCATCATACAACCAAC 58.496 36.000 0.00 0.00 0.00 3.77
2397 2656 6.707440 ACACACTTTTCATCATACAACCAA 57.293 33.333 0.00 0.00 0.00 3.67
2398 2657 6.707440 AACACACTTTTCATCATACAACCA 57.293 33.333 0.00 0.00 0.00 3.67
2399 2658 8.419076 AAAAACACACTTTTCATCATACAACC 57.581 30.769 0.00 0.00 0.00 3.77
2400 2659 8.539674 GGAAAAACACACTTTTCATCATACAAC 58.460 33.333 10.12 0.00 43.93 3.32
2401 2660 8.253810 TGGAAAAACACACTTTTCATCATACAA 58.746 29.630 10.12 0.00 43.93 2.41
2402 2661 7.776107 TGGAAAAACACACTTTTCATCATACA 58.224 30.769 10.12 0.00 43.93 2.29
2403 2662 8.816640 ATGGAAAAACACACTTTTCATCATAC 57.183 30.769 10.12 0.00 43.93 2.39
2404 2663 9.258826 CAATGGAAAAACACACTTTTCATCATA 57.741 29.630 10.12 0.00 43.93 2.15
2405 2664 7.227116 CCAATGGAAAAACACACTTTTCATCAT 59.773 33.333 0.00 3.94 43.93 2.45
2406 2665 6.538021 CCAATGGAAAAACACACTTTTCATCA 59.462 34.615 0.00 2.12 43.93 3.07
2407 2666 6.760770 TCCAATGGAAAAACACACTTTTCATC 59.239 34.615 0.00 0.00 43.93 2.92
2414 2673 3.909732 TCCTCCAATGGAAAAACACACT 58.090 40.909 2.61 0.00 32.39 3.55
2435 2694 8.109634 ACCAATGGAACTATACACTGAGATTTT 58.890 33.333 6.16 0.00 0.00 1.82
2466 2725 3.863424 CACGTATATCATCATTACCCCGC 59.137 47.826 0.00 0.00 0.00 6.13
2467 2726 5.319140 TCACGTATATCATCATTACCCCG 57.681 43.478 0.00 0.00 0.00 5.73
2518 2777 1.179174 AGTCGACACAGCAGCCAGTA 61.179 55.000 19.50 0.00 0.00 2.74
2534 2793 3.539604 CCAGAAGGATGTGGAATGAGTC 58.460 50.000 0.00 0.00 42.60 3.36
2536 2795 2.295885 GCCAGAAGGATGTGGAATGAG 58.704 52.381 0.00 0.00 42.60 2.90
2563 2825 1.602377 AGAACAGTAAAAGCGTGGTGC 59.398 47.619 0.00 0.00 46.98 5.01
2588 2850 3.345808 GGCAAGCAAGCGTGACGA 61.346 61.111 10.10 0.00 34.64 4.20
2590 2852 2.980233 AGGGCAAGCAAGCGTGAC 60.980 61.111 12.06 8.76 34.64 3.67
2597 2859 1.685803 CCACCATATCAGGGCAAGCAA 60.686 52.381 0.00 0.00 0.00 3.91
2608 2870 3.152341 CAGGCCAAAGATCCACCATATC 58.848 50.000 5.01 0.00 0.00 1.63
2628 2890 2.292292 GGCAAAAGAGTTTAGAACCGCA 59.708 45.455 0.00 0.00 0.00 5.69
2629 2891 2.292292 TGGCAAAAGAGTTTAGAACCGC 59.708 45.455 0.00 0.00 0.00 5.68
2630 2892 4.287720 GTTGGCAAAAGAGTTTAGAACCG 58.712 43.478 0.00 0.00 0.00 4.44
2635 2897 5.241728 AGCTTAGGTTGGCAAAAGAGTTTAG 59.758 40.000 13.00 0.71 0.00 1.85
2643 2909 1.243902 CCGAGCTTAGGTTGGCAAAA 58.756 50.000 0.00 0.00 0.00 2.44
2644 2910 0.109723 ACCGAGCTTAGGTTGGCAAA 59.890 50.000 16.93 0.00 39.29 3.68
2645 2911 0.605319 CACCGAGCTTAGGTTGGCAA 60.605 55.000 16.93 0.00 40.59 4.52
2646 2912 1.003839 CACCGAGCTTAGGTTGGCA 60.004 57.895 16.93 0.00 40.59 4.92
2649 2915 2.280628 GGATTCACCGAGCTTAGGTTG 58.719 52.381 11.57 8.22 40.59 3.77
2653 2919 1.560923 CGTGGATTCACCGAGCTTAG 58.439 55.000 0.00 0.00 40.65 2.18
2655 2921 1.741770 GCGTGGATTCACCGAGCTT 60.742 57.895 0.00 0.00 40.65 3.74
2664 2930 2.094906 GGGTAAAAACCAGCGTGGATTC 60.095 50.000 10.46 0.00 40.96 2.52
2665 2931 1.890489 GGGTAAAAACCAGCGTGGATT 59.110 47.619 10.46 2.98 40.96 3.01
2674 2940 2.379972 CACACTGGTGGGTAAAAACCA 58.620 47.619 5.70 0.00 44.20 3.67
2685 2951 1.844771 CGCACATGTCCACACTGGTG 61.845 60.000 0.00 0.00 44.85 4.17
2686 2952 1.597854 CGCACATGTCCACACTGGT 60.598 57.895 0.00 0.00 39.03 4.00
2688 2954 1.070821 CTACGCACATGTCCACACTG 58.929 55.000 0.00 0.00 0.00 3.66
2689 2955 0.670546 GCTACGCACATGTCCACACT 60.671 55.000 0.00 0.00 0.00 3.55
2690 2956 0.948623 TGCTACGCACATGTCCACAC 60.949 55.000 0.00 0.00 31.71 3.82
2691 2957 0.250081 TTGCTACGCACATGTCCACA 60.250 50.000 0.00 0.00 38.71 4.17
2692 2958 0.165944 GTTGCTACGCACATGTCCAC 59.834 55.000 0.00 0.00 38.71 4.02
2693 2959 0.034756 AGTTGCTACGCACATGTCCA 59.965 50.000 0.00 0.00 38.71 4.02
2701 2967 1.005037 CCAGGTCAGTTGCTACGCA 60.005 57.895 0.00 0.00 36.47 5.24
2709 2987 5.574188 AGATTATTTTCTGCCAGGTCAGTT 58.426 37.500 9.83 0.07 35.63 3.16
2739 3017 5.585820 AAAAGGCCTGAACGTAAAAGAAA 57.414 34.783 5.69 0.00 0.00 2.52
2760 3038 8.160521 TCGTCTCATTTCCTATGAAACAAAAA 57.839 30.769 0.00 0.00 42.97 1.94
2761 3039 7.737972 TCGTCTCATTTCCTATGAAACAAAA 57.262 32.000 0.00 0.00 42.97 2.44
2762 3040 7.921786 ATCGTCTCATTTCCTATGAAACAAA 57.078 32.000 0.00 0.00 42.97 2.83
2763 3041 9.613428 ATTATCGTCTCATTTCCTATGAAACAA 57.387 29.630 0.00 0.00 42.97 2.83
2797 3075 9.206690 ACATATCTTTCTCTGTAGGAATTGAGA 57.793 33.333 0.00 0.00 34.25 3.27
2798 3076 9.474920 GACATATCTTTCTCTGTAGGAATTGAG 57.525 37.037 0.00 0.00 0.00 3.02
2799 3077 8.981659 TGACATATCTTTCTCTGTAGGAATTGA 58.018 33.333 0.00 0.00 0.00 2.57
2800 3078 9.775854 ATGACATATCTTTCTCTGTAGGAATTG 57.224 33.333 0.00 0.00 0.00 2.32
2803 3081 9.605275 CAAATGACATATCTTTCTCTGTAGGAA 57.395 33.333 0.00 0.00 0.00 3.36
2804 3082 8.981659 TCAAATGACATATCTTTCTCTGTAGGA 58.018 33.333 0.00 0.00 0.00 2.94
2805 3083 9.775854 ATCAAATGACATATCTTTCTCTGTAGG 57.224 33.333 0.00 0.00 0.00 3.18
2807 3085 9.049523 GCATCAAATGACATATCTTTCTCTGTA 57.950 33.333 0.00 0.00 0.00 2.74
2808 3086 7.555195 TGCATCAAATGACATATCTTTCTCTGT 59.445 33.333 0.00 0.00 0.00 3.41
2809 3087 7.927048 TGCATCAAATGACATATCTTTCTCTG 58.073 34.615 0.00 0.00 0.00 3.35
2810 3088 8.693120 ATGCATCAAATGACATATCTTTCTCT 57.307 30.769 0.00 0.00 0.00 3.10
2821 3099 9.346005 AGTTTCTATCATATGCATCAAATGACA 57.654 29.630 11.85 1.40 32.74 3.58
2869 3147 9.913451 CTTCGCATTTCAAAGAAAAATAAAACA 57.087 25.926 0.00 0.00 0.00 2.83
2870 3148 9.368921 CCTTCGCATTTCAAAGAAAAATAAAAC 57.631 29.630 0.00 0.00 0.00 2.43
2871 3149 8.555361 CCCTTCGCATTTCAAAGAAAAATAAAA 58.445 29.630 0.00 0.00 0.00 1.52
2872 3150 7.713073 ACCCTTCGCATTTCAAAGAAAAATAAA 59.287 29.630 0.00 0.00 0.00 1.40
2873 3151 7.213678 ACCCTTCGCATTTCAAAGAAAAATAA 58.786 30.769 0.00 0.00 0.00 1.40
2874 3152 6.754193 ACCCTTCGCATTTCAAAGAAAAATA 58.246 32.000 0.00 0.00 0.00 1.40
2875 3153 5.610398 ACCCTTCGCATTTCAAAGAAAAAT 58.390 33.333 0.00 0.00 0.00 1.82
2876 3154 5.017294 ACCCTTCGCATTTCAAAGAAAAA 57.983 34.783 0.00 0.00 0.00 1.94
2877 3155 4.664150 ACCCTTCGCATTTCAAAGAAAA 57.336 36.364 0.00 0.00 0.00 2.29
2878 3156 4.664150 AACCCTTCGCATTTCAAAGAAA 57.336 36.364 0.00 0.00 0.00 2.52
2879 3157 4.825085 ACTAACCCTTCGCATTTCAAAGAA 59.175 37.500 0.00 0.00 0.00 2.52
2880 3158 4.394729 ACTAACCCTTCGCATTTCAAAGA 58.605 39.130 0.00 0.00 0.00 2.52
2881 3159 4.766404 ACTAACCCTTCGCATTTCAAAG 57.234 40.909 0.00 0.00 0.00 2.77
2882 3160 5.300792 AGAAACTAACCCTTCGCATTTCAAA 59.699 36.000 0.00 0.00 0.00 2.69
2883 3161 4.825085 AGAAACTAACCCTTCGCATTTCAA 59.175 37.500 0.00 0.00 0.00 2.69
2884 3162 4.394729 AGAAACTAACCCTTCGCATTTCA 58.605 39.130 0.00 0.00 0.00 2.69
2885 3163 6.238402 GGATAGAAACTAACCCTTCGCATTTC 60.238 42.308 0.00 0.00 0.00 2.17
2886 3164 5.589050 GGATAGAAACTAACCCTTCGCATTT 59.411 40.000 0.00 0.00 0.00 2.32
2887 3165 5.104485 AGGATAGAAACTAACCCTTCGCATT 60.104 40.000 0.00 0.00 0.00 3.56
2888 3166 4.409247 AGGATAGAAACTAACCCTTCGCAT 59.591 41.667 0.00 0.00 0.00 4.73
2889 3167 3.773119 AGGATAGAAACTAACCCTTCGCA 59.227 43.478 0.00 0.00 0.00 5.10
2890 3168 4.403585 AGGATAGAAACTAACCCTTCGC 57.596 45.455 0.00 0.00 0.00 4.70
2891 3169 6.461110 TGTAGGATAGAAACTAACCCTTCG 57.539 41.667 0.00 0.00 0.00 3.79
2892 3170 7.070821 TGGATGTAGGATAGAAACTAACCCTTC 59.929 40.741 0.00 0.00 0.00 3.46
2893 3171 6.906901 TGGATGTAGGATAGAAACTAACCCTT 59.093 38.462 0.00 0.00 0.00 3.95
2894 3172 6.449956 TGGATGTAGGATAGAAACTAACCCT 58.550 40.000 0.00 0.00 0.00 4.34
2895 3173 6.742559 TGGATGTAGGATAGAAACTAACCC 57.257 41.667 0.00 0.00 0.00 4.11
2904 3182 9.837681 TGGATTACTATTTGGATGTAGGATAGA 57.162 33.333 0.00 0.00 0.00 1.98
2907 3185 9.965902 GAATGGATTACTATTTGGATGTAGGAT 57.034 33.333 0.00 0.00 0.00 3.24
2908 3186 8.383175 GGAATGGATTACTATTTGGATGTAGGA 58.617 37.037 0.00 0.00 0.00 2.94
2909 3187 8.163408 TGGAATGGATTACTATTTGGATGTAGG 58.837 37.037 0.00 0.00 0.00 3.18
2910 3188 9.573166 TTGGAATGGATTACTATTTGGATGTAG 57.427 33.333 0.00 0.00 0.00 2.74
2911 3189 9.349713 GTTGGAATGGATTACTATTTGGATGTA 57.650 33.333 0.00 0.00 0.00 2.29
2912 3190 7.838696 TGTTGGAATGGATTACTATTTGGATGT 59.161 33.333 0.00 0.00 0.00 3.06
2913 3191 8.236585 TGTTGGAATGGATTACTATTTGGATG 57.763 34.615 0.00 0.00 0.00 3.51
2914 3192 8.837099 TTGTTGGAATGGATTACTATTTGGAT 57.163 30.769 0.00 0.00 0.00 3.41
2915 3193 8.527810 GTTTGTTGGAATGGATTACTATTTGGA 58.472 33.333 0.00 0.00 0.00 3.53
2916 3194 8.310382 TGTTTGTTGGAATGGATTACTATTTGG 58.690 33.333 0.00 0.00 0.00 3.28
2917 3195 9.703892 TTGTTTGTTGGAATGGATTACTATTTG 57.296 29.630 0.00 0.00 0.00 2.32
2921 3199 9.703892 CATTTTGTTTGTTGGAATGGATTACTA 57.296 29.630 0.00 0.00 0.00 1.82
2922 3200 7.661027 CCATTTTGTTTGTTGGAATGGATTACT 59.339 33.333 7.46 0.00 46.06 2.24
2923 3201 7.659390 TCCATTTTGTTTGTTGGAATGGATTAC 59.341 33.333 11.02 0.00 46.43 1.89
2924 3202 7.739825 TCCATTTTGTTTGTTGGAATGGATTA 58.260 30.769 11.02 0.00 46.43 1.75
2925 3203 6.599445 TCCATTTTGTTTGTTGGAATGGATT 58.401 32.000 11.02 0.00 46.43 3.01
2926 3204 6.185114 TCCATTTTGTTTGTTGGAATGGAT 57.815 33.333 11.02 0.00 46.43 3.41
2928 3206 6.690194 TTTCCATTTTGTTTGTTGGAATGG 57.310 33.333 4.24 7.00 45.14 3.16
2929 3207 9.583765 AATTTTTCCATTTTGTTTGTTGGAATG 57.416 25.926 4.24 0.00 45.14 2.67
2930 3208 9.800433 GAATTTTTCCATTTTGTTTGTTGGAAT 57.200 25.926 4.24 0.00 45.14 3.01
2948 3226 8.268605 AGGAACTGTAGAGGATAGGAATTTTTC 58.731 37.037 0.00 0.00 37.18 2.29
2949 3227 8.164057 AGGAACTGTAGAGGATAGGAATTTTT 57.836 34.615 0.00 0.00 37.18 1.94
2950 3228 7.757242 AGGAACTGTAGAGGATAGGAATTTT 57.243 36.000 0.00 0.00 37.18 1.82
2954 3232 9.947189 TTTTATAGGAACTGTAGAGGATAGGAA 57.053 33.333 0.00 0.00 41.52 3.36
2961 3239 9.892130 ACAGAAATTTTATAGGAACTGTAGAGG 57.108 33.333 0.00 0.00 41.52 3.69
2966 3244 8.793592 GGTTCACAGAAATTTTATAGGAACTGT 58.206 33.333 16.24 9.78 41.52 3.55
2967 3245 8.792633 TGGTTCACAGAAATTTTATAGGAACTG 58.207 33.333 16.24 9.32 41.52 3.16
2968 3246 8.934023 TGGTTCACAGAAATTTTATAGGAACT 57.066 30.769 16.24 0.00 46.37 3.01
2969 3247 9.974980 TTTGGTTCACAGAAATTTTATAGGAAC 57.025 29.630 11.80 11.80 33.30 3.62
2971 3249 8.303876 GCTTTGGTTCACAGAAATTTTATAGGA 58.696 33.333 0.00 0.00 0.00 2.94
2972 3250 8.087750 TGCTTTGGTTCACAGAAATTTTATAGG 58.912 33.333 0.00 0.00 0.00 2.57
2973 3251 9.132521 CTGCTTTGGTTCACAGAAATTTTATAG 57.867 33.333 0.00 0.00 31.67 1.31
2974 3252 8.087750 CCTGCTTTGGTTCACAGAAATTTTATA 58.912 33.333 0.00 0.00 31.67 0.98
2975 3253 6.930722 CCTGCTTTGGTTCACAGAAATTTTAT 59.069 34.615 0.00 0.00 31.67 1.40
2976 3254 6.279882 CCTGCTTTGGTTCACAGAAATTTTA 58.720 36.000 0.00 0.00 31.67 1.52
2977 3255 5.118286 CCTGCTTTGGTTCACAGAAATTTT 58.882 37.500 0.00 0.00 31.67 1.82
2978 3256 4.696455 CCTGCTTTGGTTCACAGAAATTT 58.304 39.130 0.00 0.00 31.67 1.82
2979 3257 3.493176 GCCTGCTTTGGTTCACAGAAATT 60.493 43.478 0.00 0.00 31.67 1.82
2980 3258 2.036346 GCCTGCTTTGGTTCACAGAAAT 59.964 45.455 0.00 0.00 31.67 2.17
2981 3259 1.408702 GCCTGCTTTGGTTCACAGAAA 59.591 47.619 0.00 0.00 31.67 2.52
2982 3260 1.032014 GCCTGCTTTGGTTCACAGAA 58.968 50.000 0.00 0.00 31.67 3.02
2983 3261 0.823356 GGCCTGCTTTGGTTCACAGA 60.823 55.000 0.00 0.00 31.67 3.41
2984 3262 0.825010 AGGCCTGCTTTGGTTCACAG 60.825 55.000 3.11 0.00 0.00 3.66
2985 3263 1.108727 CAGGCCTGCTTTGGTTCACA 61.109 55.000 22.33 0.00 0.00 3.58
2986 3264 1.662044 CAGGCCTGCTTTGGTTCAC 59.338 57.895 22.33 0.00 0.00 3.18
2987 3265 1.531365 CCAGGCCTGCTTTGGTTCA 60.531 57.895 28.39 0.00 0.00 3.18
2988 3266 0.251165 TACCAGGCCTGCTTTGGTTC 60.251 55.000 28.39 0.00 42.36 3.62
2989 3267 0.539669 GTACCAGGCCTGCTTTGGTT 60.540 55.000 28.39 7.64 42.36 3.67
2990 3268 1.074951 GTACCAGGCCTGCTTTGGT 59.925 57.895 28.39 22.10 46.44 3.67
2991 3269 0.251341 AAGTACCAGGCCTGCTTTGG 60.251 55.000 28.39 17.04 37.98 3.28
2992 3270 0.883833 CAAGTACCAGGCCTGCTTTG 59.116 55.000 28.39 21.26 0.00 2.77
2993 3271 0.251341 CCAAGTACCAGGCCTGCTTT 60.251 55.000 28.39 15.56 0.00 3.51
2994 3272 1.380302 CCAAGTACCAGGCCTGCTT 59.620 57.895 28.39 21.32 0.00 3.91
2995 3273 2.606587 CCCAAGTACCAGGCCTGCT 61.607 63.158 28.39 17.23 0.00 4.24
2996 3274 2.044946 CCCAAGTACCAGGCCTGC 60.045 66.667 28.39 14.14 0.00 4.85
2997 3275 1.002134 CACCCAAGTACCAGGCCTG 60.002 63.158 26.87 26.87 0.00 4.85
2998 3276 1.151899 TCACCCAAGTACCAGGCCT 60.152 57.895 0.00 0.00 0.00 5.19
2999 3277 1.002502 GTCACCCAAGTACCAGGCC 60.003 63.158 0.00 0.00 0.00 5.19
3000 3278 0.328258 ATGTCACCCAAGTACCAGGC 59.672 55.000 0.00 0.00 0.00 4.85
3001 3279 2.569853 TGTATGTCACCCAAGTACCAGG 59.430 50.000 0.00 0.00 0.00 4.45
3002 3280 3.973206 TGTATGTCACCCAAGTACCAG 57.027 47.619 0.00 0.00 0.00 4.00
3003 3281 4.919774 ATTGTATGTCACCCAAGTACCA 57.080 40.909 0.00 0.00 0.00 3.25
3004 3282 4.142469 GCAATTGTATGTCACCCAAGTACC 60.142 45.833 7.40 0.00 0.00 3.34
3015 3293 4.610945 GCAGGTAATGGCAATTGTATGTC 58.389 43.478 7.40 0.57 0.00 3.06
3019 3297 1.403679 GCGCAGGTAATGGCAATTGTA 59.596 47.619 0.30 0.00 0.00 2.41
3043 3321 5.297029 ACAACTTTAGGAGTTCTTCAACAGC 59.703 40.000 0.00 0.00 45.40 4.40
3063 3341 0.677842 AGTCCTCGTACCCACACAAC 59.322 55.000 0.00 0.00 0.00 3.32
3064 3342 0.963962 GAGTCCTCGTACCCACACAA 59.036 55.000 0.00 0.00 0.00 3.33
3080 3358 2.102588 ACGTTGCACTTGGTTAGAGAGT 59.897 45.455 0.00 0.00 0.00 3.24
3096 3374 4.113354 GGCTTCCAGATCTAGTTACGTTG 58.887 47.826 0.00 0.00 0.00 4.10
3098 3376 3.362706 TGGCTTCCAGATCTAGTTACGT 58.637 45.455 0.00 0.00 0.00 3.57
3121 3399 3.129988 CCATCTTCAGAAATTGTGGAGCC 59.870 47.826 0.00 0.00 0.00 4.70
3157 3435 5.607477 TCAGTTTTGGATCGTACAAAGTCT 58.393 37.500 0.00 0.00 38.84 3.24
3160 3440 5.411361 TCCATCAGTTTTGGATCGTACAAAG 59.589 40.000 0.00 0.00 38.35 2.77
3271 3570 5.370584 ACCCAATAATGTCCTCATCATCTGA 59.629 40.000 0.00 0.00 32.56 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.