Multiple sequence alignment - TraesCS2B01G178100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G178100 chr2B 100.000 5400 0 0 1 5400 153228230 153222831 0.000000e+00 9973.0
1 TraesCS2B01G178100 chr2A 89.502 3534 224 53 1256 4729 101097424 101093978 0.000000e+00 4335.0
2 TraesCS2B01G178100 chr2A 85.530 698 51 25 531 1216 101098160 101097501 0.000000e+00 684.0
3 TraesCS2B01G178100 chr2A 86.880 343 17 11 5060 5400 101093737 101093421 5.140000e-95 359.0
4 TraesCS2B01G178100 chr2A 90.588 255 18 5 4770 5019 101093975 101093722 3.120000e-87 333.0
5 TraesCS2B01G178100 chr2D 90.717 2413 155 28 2583 4962 102084189 102081813 0.000000e+00 3151.0
6 TraesCS2B01G178100 chr2D 88.649 2035 134 51 561 2557 102086161 102084186 0.000000e+00 2388.0
7 TraesCS2B01G178100 chr2D 90.884 362 16 7 4962 5314 102044350 102043997 2.280000e-128 470.0
8 TraesCS2B01G178100 chr2D 90.030 331 16 8 143 466 102086635 102086315 3.890000e-111 412.0
9 TraesCS2B01G178100 chr2D 96.104 77 2 1 5313 5388 102043973 102043897 2.040000e-24 124.0
10 TraesCS2B01G178100 chr7B 95.238 42 1 1 5021 5061 332802676 332802717 1.260000e-06 65.8
11 TraesCS2B01G178100 chr7D 86.441 59 4 4 5005 5061 3208630 3208574 1.620000e-05 62.1
12 TraesCS2B01G178100 chr6A 94.872 39 0 2 5023 5061 20864602 20864638 5.840000e-05 60.2
13 TraesCS2B01G178100 chr1A 94.872 39 1 1 5023 5061 2390712 2390749 5.840000e-05 60.2
14 TraesCS2B01G178100 chr1A 92.683 41 3 0 5021 5061 34973388 34973428 5.840000e-05 60.2
15 TraesCS2B01G178100 chr5A 90.698 43 2 2 5021 5061 44932781 44932739 7.560000e-04 56.5
16 TraesCS2B01G178100 chr3A 100.000 28 0 0 5034 5061 421129857 421129884 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G178100 chr2B 153222831 153228230 5399 True 9973.000000 9973 100.000000 1 5400 1 chr2B.!!$R1 5399
1 TraesCS2B01G178100 chr2A 101093421 101098160 4739 True 1427.750000 4335 88.125000 531 5400 4 chr2A.!!$R1 4869
2 TraesCS2B01G178100 chr2D 102081813 102086635 4822 True 1983.666667 3151 89.798667 143 4962 3 chr2D.!!$R2 4819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 430 0.037734 AACATCCCAAACGGACCCTC 59.962 55.0 0.00 0.00 46.09 4.30 F
426 433 0.043637 ATCCCAAACGGACCCTCCTA 59.956 55.0 0.00 0.00 46.09 2.94 F
916 1031 0.105709 CCCTTCTCCCTCTCCCTCTC 60.106 65.0 0.00 0.00 0.00 3.20 F
1952 2138 0.464373 GCATGGTAGGCTGCTGCTAA 60.464 55.0 15.64 0.97 39.59 3.09 F
2825 3025 0.252148 TTGATGGCCCAAGGAATGCA 60.252 50.0 0.00 0.00 0.00 3.96 F
3148 3350 0.107165 AGGCCGCTTCTATTTCCACC 60.107 55.0 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2028 2214 0.104725 GACCCTGATCCTGATCCCCT 60.105 60.0 4.76 0.0 37.02 4.79 R
2227 2413 1.252215 TTGATGACCCACGCCGACTA 61.252 55.0 0.00 0.0 0.00 2.59 R
2799 2999 1.396653 CTTGGGCCATCAAGTCATCC 58.603 55.0 7.26 0.0 39.27 3.51 R
3132 3334 0.254747 TGGGGTGGAAATAGAAGCGG 59.745 55.0 0.00 0.0 0.00 5.52 R
4026 4238 0.174389 GTCTCTCGCTCTGGCAATGA 59.826 55.0 0.00 0.0 38.60 2.57 R
5061 5299 0.107017 GGCTATGAGTGTGGTGCCAT 60.107 55.0 0.00 0.0 40.04 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.909267 GCTTAAAAAGAAAGCTGACAAATTGT 58.091 30.769 0.00 0.00 44.75 2.71
31 32 8.390354 GCTTAAAAAGAAAGCTGACAAATTGTT 58.610 29.630 0.00 0.00 44.75 2.83
48 49 4.589046 TTTTTCGGCCTGGAAGCA 57.411 50.000 0.00 0.00 0.00 3.91
49 50 3.050089 TTTTTCGGCCTGGAAGCAT 57.950 47.368 0.00 0.00 0.00 3.79
50 51 0.602562 TTTTTCGGCCTGGAAGCATG 59.397 50.000 0.00 0.00 0.00 4.06
51 52 0.539438 TTTTCGGCCTGGAAGCATGT 60.539 50.000 0.00 0.00 0.00 3.21
52 53 0.326595 TTTCGGCCTGGAAGCATGTA 59.673 50.000 0.00 0.00 0.00 2.29
53 54 0.546122 TTCGGCCTGGAAGCATGTAT 59.454 50.000 0.00 0.00 0.00 2.29
54 55 1.419381 TCGGCCTGGAAGCATGTATA 58.581 50.000 0.00 0.00 0.00 1.47
55 56 1.344438 TCGGCCTGGAAGCATGTATAG 59.656 52.381 0.00 0.00 0.00 1.31
56 57 1.070758 CGGCCTGGAAGCATGTATAGT 59.929 52.381 0.00 0.00 0.00 2.12
57 58 2.485479 CGGCCTGGAAGCATGTATAGTT 60.485 50.000 0.00 0.00 0.00 2.24
58 59 2.880890 GGCCTGGAAGCATGTATAGTTG 59.119 50.000 0.00 0.00 0.00 3.16
59 60 2.291741 GCCTGGAAGCATGTATAGTTGC 59.708 50.000 0.00 0.00 39.17 4.17
60 61 2.880890 CCTGGAAGCATGTATAGTTGCC 59.119 50.000 0.00 0.00 39.72 4.52
61 62 2.545526 CTGGAAGCATGTATAGTTGCCG 59.454 50.000 0.00 0.00 39.72 5.69
62 63 1.264288 GGAAGCATGTATAGTTGCCGC 59.736 52.381 0.00 0.00 39.72 6.53
63 64 2.213499 GAAGCATGTATAGTTGCCGCT 58.787 47.619 0.00 0.00 39.72 5.52
64 65 3.390135 GAAGCATGTATAGTTGCCGCTA 58.610 45.455 0.00 0.00 39.72 4.26
65 66 3.469008 AGCATGTATAGTTGCCGCTAA 57.531 42.857 0.00 0.00 39.72 3.09
66 67 3.131396 AGCATGTATAGTTGCCGCTAAC 58.869 45.455 0.00 0.00 39.72 2.34
67 68 2.869801 GCATGTATAGTTGCCGCTAACA 59.130 45.455 0.00 0.00 33.02 2.41
68 69 3.311322 GCATGTATAGTTGCCGCTAACAA 59.689 43.478 0.00 0.00 33.02 2.83
69 70 4.201871 GCATGTATAGTTGCCGCTAACAAA 60.202 41.667 0.00 0.00 33.02 2.83
70 71 5.501715 CATGTATAGTTGCCGCTAACAAAG 58.498 41.667 7.96 0.00 33.02 2.77
71 72 4.571919 TGTATAGTTGCCGCTAACAAAGT 58.428 39.130 7.96 0.00 33.02 2.66
72 73 5.722263 TGTATAGTTGCCGCTAACAAAGTA 58.278 37.500 7.96 0.00 33.02 2.24
73 74 5.577945 TGTATAGTTGCCGCTAACAAAGTAC 59.422 40.000 7.96 0.00 33.02 2.73
74 75 3.121738 AGTTGCCGCTAACAAAGTACT 57.878 42.857 0.00 0.00 33.02 2.73
75 76 3.064931 AGTTGCCGCTAACAAAGTACTC 58.935 45.455 0.00 0.00 33.02 2.59
76 77 2.088950 TGCCGCTAACAAAGTACTCC 57.911 50.000 0.00 0.00 0.00 3.85
77 78 1.338389 TGCCGCTAACAAAGTACTCCC 60.338 52.381 0.00 0.00 0.00 4.30
78 79 1.066358 GCCGCTAACAAAGTACTCCCT 60.066 52.381 0.00 0.00 0.00 4.20
79 80 2.889852 CCGCTAACAAAGTACTCCCTC 58.110 52.381 0.00 0.00 0.00 4.30
80 81 2.527100 CGCTAACAAAGTACTCCCTCG 58.473 52.381 0.00 0.00 0.00 4.63
81 82 2.734492 CGCTAACAAAGTACTCCCTCGG 60.734 54.545 0.00 0.00 0.00 4.63
82 83 2.233186 GCTAACAAAGTACTCCCTCGGT 59.767 50.000 0.00 0.00 0.00 4.69
83 84 3.675502 GCTAACAAAGTACTCCCTCGGTC 60.676 52.174 0.00 0.00 0.00 4.79
84 85 1.264295 ACAAAGTACTCCCTCGGTCC 58.736 55.000 0.00 0.00 0.00 4.46
85 86 0.535797 CAAAGTACTCCCTCGGTCCC 59.464 60.000 0.00 0.00 0.00 4.46
86 87 0.115745 AAAGTACTCCCTCGGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
87 88 0.338814 AAGTACTCCCTCGGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
88 89 1.229131 AGTACTCCCTCGGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
89 90 1.572415 AGTACTCCCTCGGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
90 91 2.179424 AGTACTCCCTCGGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
91 92 3.400322 AGTACTCCCTCGGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
92 93 3.562108 ACTCCCTCGGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
93 94 4.687262 ACTCCCTCGGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
94 95 4.351127 ACTCCCTCGGTCCCATAATATAC 58.649 47.826 0.00 0.00 0.00 1.47
95 96 3.359033 TCCCTCGGTCCCATAATATACG 58.641 50.000 0.00 0.00 0.00 3.06
96 97 2.429610 CCCTCGGTCCCATAATATACGG 59.570 54.545 0.00 0.00 0.00 4.02
97 98 2.159142 CCTCGGTCCCATAATATACGGC 60.159 54.545 0.00 0.00 0.00 5.68
98 99 2.758979 CTCGGTCCCATAATATACGGCT 59.241 50.000 0.00 0.00 0.00 5.52
99 100 3.167485 TCGGTCCCATAATATACGGCTT 58.833 45.455 0.00 0.00 0.00 4.35
100 101 3.056393 TCGGTCCCATAATATACGGCTTG 60.056 47.826 0.00 0.00 0.00 4.01
101 102 3.007635 GGTCCCATAATATACGGCTTGC 58.992 50.000 0.00 0.00 0.00 4.01
102 103 3.558321 GGTCCCATAATATACGGCTTGCA 60.558 47.826 0.00 0.00 0.00 4.08
103 104 4.069304 GTCCCATAATATACGGCTTGCAA 58.931 43.478 0.00 0.00 0.00 4.08
104 105 4.517453 GTCCCATAATATACGGCTTGCAAA 59.483 41.667 0.00 0.00 0.00 3.68
105 106 5.009210 GTCCCATAATATACGGCTTGCAAAA 59.991 40.000 0.00 0.00 0.00 2.44
106 107 5.594725 TCCCATAATATACGGCTTGCAAAAA 59.405 36.000 0.00 0.00 0.00 1.94
107 108 5.689961 CCCATAATATACGGCTTGCAAAAAC 59.310 40.000 0.00 0.00 0.00 2.43
108 109 5.398122 CCATAATATACGGCTTGCAAAAACG 59.602 40.000 13.43 13.43 0.00 3.60
109 110 4.428615 AATATACGGCTTGCAAAAACGT 57.571 36.364 21.12 21.12 40.52 3.99
110 111 2.785713 ATACGGCTTGCAAAAACGTT 57.214 40.000 22.10 0.00 38.77 3.99
111 112 2.563471 TACGGCTTGCAAAAACGTTT 57.437 40.000 22.10 7.96 38.77 3.60
112 113 1.715993 ACGGCTTGCAAAAACGTTTT 58.284 40.000 20.26 20.26 35.18 2.43
113 114 2.877335 ACGGCTTGCAAAAACGTTTTA 58.123 38.095 25.44 8.61 35.18 1.52
114 115 3.449632 ACGGCTTGCAAAAACGTTTTAT 58.550 36.364 25.44 13.37 35.18 1.40
115 116 4.608951 ACGGCTTGCAAAAACGTTTTATA 58.391 34.783 25.44 12.54 35.18 0.98
116 117 5.224135 ACGGCTTGCAAAAACGTTTTATAT 58.776 33.333 25.44 8.61 35.18 0.86
117 118 5.692654 ACGGCTTGCAAAAACGTTTTATATT 59.307 32.000 25.44 8.23 35.18 1.28
118 119 6.006482 CGGCTTGCAAAAACGTTTTATATTG 58.994 36.000 25.44 19.89 0.00 1.90
119 120 6.346199 CGGCTTGCAAAAACGTTTTATATTGT 60.346 34.615 25.44 7.11 0.00 2.71
120 121 6.789877 GGCTTGCAAAAACGTTTTATATTGTG 59.210 34.615 25.44 18.90 0.00 3.33
121 122 7.306866 GGCTTGCAAAAACGTTTTATATTGTGA 60.307 33.333 25.44 11.79 0.00 3.58
122 123 7.735586 GCTTGCAAAAACGTTTTATATTGTGAG 59.264 33.333 25.44 19.22 0.00 3.51
123 124 7.099666 TGCAAAAACGTTTTATATTGTGAGC 57.900 32.000 25.44 16.76 0.00 4.26
124 125 6.144724 TGCAAAAACGTTTTATATTGTGAGCC 59.855 34.615 25.44 8.30 0.00 4.70
125 126 6.666451 GCAAAAACGTTTTATATTGTGAGCCG 60.666 38.462 25.44 0.00 0.00 5.52
126 127 4.609691 AACGTTTTATATTGTGAGCCGG 57.390 40.909 0.00 0.00 0.00 6.13
127 128 3.864243 ACGTTTTATATTGTGAGCCGGA 58.136 40.909 5.05 0.00 0.00 5.14
128 129 3.869246 ACGTTTTATATTGTGAGCCGGAG 59.131 43.478 5.05 0.00 0.00 4.63
182 183 6.192773 ACCAGGTAGTAGTAGTAATGAAGCA 58.807 40.000 0.00 0.00 0.00 3.91
206 207 4.096382 GCATTAACACCGAAATGGACAGAT 59.904 41.667 0.00 0.00 42.00 2.90
294 298 1.826385 AACATTCCGCCAGAGAAAGG 58.174 50.000 0.00 0.00 0.00 3.11
305 309 3.244596 GCCAGAGAAAGGGAGTTGTACTT 60.245 47.826 0.00 0.00 0.00 2.24
306 310 4.319177 CCAGAGAAAGGGAGTTGTACTTG 58.681 47.826 0.00 0.00 0.00 3.16
307 311 4.202367 CCAGAGAAAGGGAGTTGTACTTGT 60.202 45.833 0.00 0.00 0.00 3.16
308 312 5.011738 CCAGAGAAAGGGAGTTGTACTTGTA 59.988 44.000 0.00 0.00 0.00 2.41
310 314 5.011840 AGAGAAAGGGAGTTGTACTTGTACC 59.988 44.000 8.25 0.00 0.00 3.34
312 316 4.347360 AAGGGAGTTGTACTTGTACCAC 57.653 45.455 8.25 7.56 0.00 4.16
314 318 3.908103 AGGGAGTTGTACTTGTACCACAT 59.092 43.478 14.64 3.62 0.00 3.21
315 319 5.088730 AGGGAGTTGTACTTGTACCACATA 58.911 41.667 14.64 0.00 0.00 2.29
316 320 5.046807 AGGGAGTTGTACTTGTACCACATAC 60.047 44.000 14.64 7.63 0.00 2.39
317 321 5.279607 GGGAGTTGTACTTGTACCACATACA 60.280 44.000 14.64 0.00 42.27 2.29
318 322 6.403878 GGAGTTGTACTTGTACCACATACAT 58.596 40.000 14.64 0.00 43.46 2.29
319 323 6.534079 GGAGTTGTACTTGTACCACATACATC 59.466 42.308 14.64 5.75 43.46 3.06
320 324 6.097356 AGTTGTACTTGTACCACATACATCG 58.903 40.000 14.64 0.00 43.46 3.84
321 325 5.900865 TGTACTTGTACCACATACATCGA 57.099 39.130 8.25 0.00 43.46 3.59
322 326 5.886992 TGTACTTGTACCACATACATCGAG 58.113 41.667 8.25 0.00 43.46 4.04
323 327 5.648960 TGTACTTGTACCACATACATCGAGA 59.351 40.000 8.25 0.00 43.46 4.04
337 341 0.176680 TCGAGAGAGGCCATGCTTTC 59.823 55.000 5.01 3.08 34.84 2.62
383 390 3.097614 TCAAGAGTTCAGTACTAGGCCC 58.902 50.000 0.00 0.00 37.17 5.80
390 397 3.391799 TCAGTACTAGGCCCATGTGTA 57.608 47.619 0.00 0.00 0.00 2.90
417 424 0.391927 TAGCGGAACATCCCAAACGG 60.392 55.000 0.00 0.00 31.13 4.44
423 430 0.037734 AACATCCCAAACGGACCCTC 59.962 55.000 0.00 0.00 46.09 4.30
425 432 1.229853 ATCCCAAACGGACCCTCCT 60.230 57.895 0.00 0.00 46.09 3.69
426 433 0.043637 ATCCCAAACGGACCCTCCTA 59.956 55.000 0.00 0.00 46.09 2.94
428 435 0.694196 CCCAAACGGACCCTCCTAAA 59.306 55.000 0.00 0.00 33.30 1.85
435 442 1.677820 CGGACCCTCCTAAATTTGCGT 60.678 52.381 0.00 0.00 33.30 5.24
446 453 2.799126 AATTTGCGTGTCCTCCCATA 57.201 45.000 0.00 0.00 0.00 2.74
455 462 4.321675 GCGTGTCCTCCCATAAACAAAAAT 60.322 41.667 0.00 0.00 0.00 1.82
463 470 3.934579 CCCATAAACAAAAATCCAGCTGC 59.065 43.478 8.66 0.00 0.00 5.25
466 473 2.825861 AACAAAAATCCAGCTGCCTG 57.174 45.000 8.66 0.00 38.85 4.85
467 474 0.319405 ACAAAAATCCAGCTGCCTGC 59.681 50.000 8.66 0.00 43.29 4.85
522 552 3.294493 GCAACCGAGCCAGCCAAA 61.294 61.111 0.00 0.00 0.00 3.28
546 604 3.042560 GCACAGTTTGCCTGACCC 58.957 61.111 0.00 0.00 46.63 4.46
551 609 3.056328 GTTTGCCTGACCCGAGCC 61.056 66.667 0.00 0.00 0.00 4.70
587 654 2.549611 CTTCCGAGCTCCACCGTCAG 62.550 65.000 8.47 0.00 0.00 3.51
593 660 1.373497 GCTCCACCGTCAGTCAGTG 60.373 63.158 0.00 0.00 0.00 3.66
594 661 1.806461 GCTCCACCGTCAGTCAGTGA 61.806 60.000 0.00 0.00 33.21 3.41
602 669 2.341452 TCAGTCAGTGACAGTCCCG 58.659 57.895 24.73 6.31 34.60 5.14
790 889 6.536582 GCTGCCTTTTCTTTCTTTCTTTCTTT 59.463 34.615 0.00 0.00 0.00 2.52
791 890 7.254252 GCTGCCTTTTCTTTCTTTCTTTCTTTC 60.254 37.037 0.00 0.00 0.00 2.62
792 891 7.840931 TGCCTTTTCTTTCTTTCTTTCTTTCT 58.159 30.769 0.00 0.00 0.00 2.52
793 892 8.314021 TGCCTTTTCTTTCTTTCTTTCTTTCTT 58.686 29.630 0.00 0.00 0.00 2.52
876 987 2.360165 TCCGCGTATAAGTTCCTTCCTC 59.640 50.000 4.92 0.00 0.00 3.71
912 1027 0.830023 CGATCCCTTCTCCCTCTCCC 60.830 65.000 0.00 0.00 0.00 4.30
913 1028 0.565674 GATCCCTTCTCCCTCTCCCT 59.434 60.000 0.00 0.00 0.00 4.20
914 1029 0.565674 ATCCCTTCTCCCTCTCCCTC 59.434 60.000 0.00 0.00 0.00 4.30
915 1030 0.556380 TCCCTTCTCCCTCTCCCTCT 60.556 60.000 0.00 0.00 0.00 3.69
916 1031 0.105709 CCCTTCTCCCTCTCCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
917 1032 0.105709 CCTTCTCCCTCTCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
918 1033 0.105709 CTTCTCCCTCTCCCTCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
919 1034 0.556380 TTCTCCCTCTCCCTCTCCCT 60.556 60.000 0.00 0.00 0.00 4.20
920 1035 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
921 1036 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
922 1037 0.556380 TCCCTCTCCCTCTCCCTCTT 60.556 60.000 0.00 0.00 0.00 2.85
923 1038 0.105709 CCCTCTCCCTCTCCCTCTTC 60.106 65.000 0.00 0.00 0.00 2.87
991 1106 3.191836 CGCGAGAGAGCTTGAGGA 58.808 61.111 0.00 0.00 34.40 3.71
1014 1131 2.155197 GAGCCATGGGTTCCTGGGTT 62.155 60.000 19.39 0.00 43.05 4.11
1193 1310 5.368816 AGGGAGCCGGTAACTAATTAAATCT 59.631 40.000 1.90 0.00 0.00 2.40
1194 1311 6.060136 GGGAGCCGGTAACTAATTAAATCTT 58.940 40.000 1.90 0.00 0.00 2.40
1199 1316 6.204301 GCCGGTAACTAATTAAATCTTCCTCC 59.796 42.308 1.90 0.00 0.00 4.30
1248 1389 3.685058 GCTAGCGGCAGTATTTTTCTTG 58.315 45.455 0.00 0.00 41.35 3.02
1249 1390 3.127030 GCTAGCGGCAGTATTTTTCTTGT 59.873 43.478 0.00 0.00 41.35 3.16
1251 1392 5.163794 GCTAGCGGCAGTATTTTTCTTGTTA 60.164 40.000 0.00 0.00 41.35 2.41
1292 1446 2.420022 GTCACATGCTTGCCGTAGATTT 59.580 45.455 0.00 0.00 0.00 2.17
1295 1449 1.402968 CATGCTTGCCGTAGATTTGCT 59.597 47.619 0.00 0.00 0.00 3.91
1298 1452 1.468520 GCTTGCCGTAGATTTGCTCAA 59.531 47.619 0.00 0.00 0.00 3.02
1303 1457 2.289002 GCCGTAGATTTGCTCAATGAGG 59.711 50.000 12.66 0.00 0.00 3.86
1330 1484 3.716006 CGGGTCGCTGCTGTGTTG 61.716 66.667 3.96 0.00 0.00 3.33
1331 1485 2.591715 GGGTCGCTGCTGTGTTGT 60.592 61.111 3.96 0.00 0.00 3.32
1332 1486 2.186826 GGGTCGCTGCTGTGTTGTT 61.187 57.895 3.96 0.00 0.00 2.83
1364 1518 6.347483 GGTCGGTCAGAGTAACAATTTTTCTC 60.347 42.308 0.00 0.00 0.00 2.87
1382 1536 3.396560 TCTCATCTGATTGCTATTGCCG 58.603 45.455 0.00 0.00 38.71 5.69
1426 1588 7.119387 TCATGTTCTACTCCTCTTCAGTATCA 58.881 38.462 0.00 0.00 0.00 2.15
1474 1644 6.201806 GTGATCATGCAGTCTTATCCTTGTAC 59.798 42.308 0.00 0.00 0.00 2.90
1475 1645 5.939764 TCATGCAGTCTTATCCTTGTACT 57.060 39.130 0.00 0.00 0.00 2.73
1476 1646 5.907207 TCATGCAGTCTTATCCTTGTACTC 58.093 41.667 0.00 0.00 0.00 2.59
1632 1818 2.378038 ACTGTTGGCTGTGAATTGTGT 58.622 42.857 0.00 0.00 0.00 3.72
1665 1851 2.737359 GCATGATTGCTTGGTCACCATG 60.737 50.000 0.00 0.00 45.77 3.66
1678 1864 7.040478 GCTTGGTCACCATGCTAAATATATCAA 60.040 37.037 24.28 0.00 46.74 2.57
1679 1865 7.984422 TGGTCACCATGCTAAATATATCAAG 57.016 36.000 0.00 0.00 0.00 3.02
1699 1885 2.241430 AGGGTCCTAAATAGTTGGGCAC 59.759 50.000 0.00 0.00 35.37 5.01
1713 1899 2.551912 GGCACCCCACAGAAACACG 61.552 63.158 0.00 0.00 0.00 4.49
1719 1905 1.021202 CCCACAGAAACACGAAGCAA 58.979 50.000 0.00 0.00 0.00 3.91
1742 1928 7.042254 GCAAGAAATTGCTCAAGATTTGAAGTT 60.042 33.333 5.74 0.00 44.15 2.66
1746 1932 6.998258 ATTGCTCAAGATTTGAAGTTTTCG 57.002 33.333 0.00 0.00 39.58 3.46
1749 1935 7.202016 TGCTCAAGATTTGAAGTTTTCGTAT 57.798 32.000 0.00 0.00 39.58 3.06
1752 1938 7.504924 TCAAGATTTGAAGTTTTCGTATGGT 57.495 32.000 0.00 0.00 36.59 3.55
1753 1939 7.581476 TCAAGATTTGAAGTTTTCGTATGGTC 58.419 34.615 0.00 0.00 36.59 4.02
1789 1975 8.022550 TGCTGATTTATAAATGTGTGTTGTGAG 58.977 33.333 15.39 0.00 0.00 3.51
1798 1984 5.679734 ATGTGTGTTGTGAGAATTCTGTC 57.320 39.130 14.00 6.13 0.00 3.51
1805 1991 5.753438 TGTTGTGAGAATTCTGTCTGTGTAC 59.247 40.000 14.00 0.00 0.00 2.90
1949 2135 2.124403 AGCATGGTAGGCTGCTGC 60.124 61.111 7.10 7.10 46.55 5.25
1950 2136 2.124403 GCATGGTAGGCTGCTGCT 60.124 61.111 15.64 4.34 39.59 4.24
1951 2137 1.146930 GCATGGTAGGCTGCTGCTA 59.853 57.895 15.64 3.38 39.59 3.49
1952 2138 0.464373 GCATGGTAGGCTGCTGCTAA 60.464 55.000 15.64 0.97 39.59 3.09
1975 2161 9.499479 CTAAATACTGATGCTTACTTCCATGAT 57.501 33.333 0.00 0.00 0.00 2.45
1976 2162 7.741027 AATACTGATGCTTACTTCCATGATG 57.259 36.000 0.00 0.00 0.00 3.07
1977 2163 5.363562 ACTGATGCTTACTTCCATGATGA 57.636 39.130 0.00 0.00 0.00 2.92
1978 2164 5.121811 ACTGATGCTTACTTCCATGATGAC 58.878 41.667 0.00 0.00 0.00 3.06
1979 2165 5.101648 TGATGCTTACTTCCATGATGACA 57.898 39.130 0.00 0.00 0.00 3.58
1980 2166 5.499313 TGATGCTTACTTCCATGATGACAA 58.501 37.500 0.00 0.00 0.00 3.18
1981 2167 6.124340 TGATGCTTACTTCCATGATGACAAT 58.876 36.000 0.00 0.00 0.00 2.71
1982 2168 6.261603 TGATGCTTACTTCCATGATGACAATC 59.738 38.462 0.00 0.00 0.00 2.67
1983 2169 5.499313 TGCTTACTTCCATGATGACAATCA 58.501 37.500 0.00 0.00 46.71 2.57
2028 2214 0.471591 ACCGGGTTACCACCTACACA 60.472 55.000 6.32 0.00 43.65 3.72
2122 2308 3.585862 TGTGGACTGAGCGATAAGTTTC 58.414 45.455 0.00 0.00 0.00 2.78
2170 2356 8.173410 GCCTTAGCTGATGGTGATACCAAATG 62.173 46.154 4.60 0.00 43.84 2.32
2364 2552 8.400184 ACTTGTCATGTGTAGTTGTAGTACTA 57.600 34.615 0.00 0.00 0.00 1.82
2381 2569 9.841295 TGTAGTACTACTTTCTTGTCCAAAAAT 57.159 29.630 28.56 0.00 37.00 1.82
2542 2730 2.047560 GGGCTGACGCGGTTAGTT 60.048 61.111 12.47 0.00 36.88 2.24
2548 2736 2.095919 GCTGACGCGGTTAGTTCAAATT 60.096 45.455 12.47 0.00 0.00 1.82
2600 2788 7.706179 GTGATGGACTCTTTTTCATTTGAACAA 59.294 33.333 0.00 0.00 33.13 2.83
2799 2999 1.265095 CGTATTTGGCAGGCTGCTATG 59.735 52.381 35.73 22.05 44.28 2.23
2825 3025 0.252148 TTGATGGCCCAAGGAATGCA 60.252 50.000 0.00 0.00 0.00 3.96
2859 3059 4.336433 CAGGTATTGGTGCTTCCATAGTTG 59.664 45.833 2.36 0.00 46.60 3.16
2862 3062 5.163652 GGTATTGGTGCTTCCATAGTTGAAC 60.164 44.000 2.36 0.00 46.60 3.18
2937 3139 1.068352 ACCACCAGGCCCTTCTTTCT 61.068 55.000 0.00 0.00 39.06 2.52
3058 3260 4.801330 ATGTTCCTTGACTCGTATGTGA 57.199 40.909 0.00 0.00 0.00 3.58
3072 3274 6.818644 ACTCGTATGTGAACATAATGAAGCTT 59.181 34.615 0.00 0.00 40.18 3.74
3108 3310 9.556030 GTTATCTTTGTTACATTTAGTGCCTTC 57.444 33.333 0.00 0.00 0.00 3.46
3115 3317 7.871853 TGTTACATTTAGTGCCTTCTTTCTTC 58.128 34.615 0.00 0.00 0.00 2.87
3124 3326 1.196354 CCTTCTTTCTTCGCTGCTGTG 59.804 52.381 0.00 0.00 0.00 3.66
3131 3333 1.004560 TTCGCTGCTGTGAGGAAGG 60.005 57.895 6.94 0.00 33.90 3.46
3132 3334 3.123620 CGCTGCTGTGAGGAAGGC 61.124 66.667 0.00 0.00 0.00 4.35
3134 3336 2.435586 CTGCTGTGAGGAAGGCCG 60.436 66.667 0.00 0.00 39.96 6.13
3147 3349 1.671328 GAAGGCCGCTTCTATTTCCAC 59.329 52.381 0.00 0.00 0.00 4.02
3148 3350 0.107165 AGGCCGCTTCTATTTCCACC 60.107 55.000 0.00 0.00 0.00 4.61
3158 3360 4.028993 TCTATTTCCACCCCACTTCAAC 57.971 45.455 0.00 0.00 0.00 3.18
3160 3362 0.547075 TTTCCACCCCACTTCAACGA 59.453 50.000 0.00 0.00 0.00 3.85
3189 3391 9.537192 TGTTAAGGTGATATAATTCTGTTACCG 57.463 33.333 0.00 0.00 32.41 4.02
3200 3402 2.206750 TCTGTTACCGTTTGCAGTGTC 58.793 47.619 0.00 0.00 0.00 3.67
3231 3433 2.478200 GGTCGTCGAGAAATGAGAGACC 60.478 54.545 0.00 0.00 37.26 3.85
3274 3476 1.737838 CAGGTATTTGCCGCTCTCAA 58.262 50.000 0.00 0.00 0.00 3.02
3277 3479 3.057596 CAGGTATTTGCCGCTCTCAAAAA 60.058 43.478 0.00 0.00 37.04 1.94
3287 3489 6.454795 TGCCGCTCTCAAAAATATTTTTCTT 58.545 32.000 20.71 0.84 38.23 2.52
3313 3515 7.823149 ATGCTTTGTGATAATTCTTTCTTGC 57.177 32.000 0.00 0.00 0.00 4.01
3322 3524 9.657121 GTGATAATTCTTTCTTGCTACTATTGC 57.343 33.333 0.00 0.00 0.00 3.56
3323 3525 9.618890 TGATAATTCTTTCTTGCTACTATTGCT 57.381 29.630 0.00 0.00 0.00 3.91
3328 3530 7.369803 TCTTTCTTGCTACTATTGCTCTTTG 57.630 36.000 0.00 0.00 0.00 2.77
3336 3538 5.292101 GCTACTATTGCTCTTTGTACCTGTG 59.708 44.000 0.00 0.00 0.00 3.66
3338 3540 3.508845 ATTGCTCTTTGTACCTGTGGT 57.491 42.857 0.00 0.00 40.16 4.16
3355 3559 7.110155 ACCTGTGGTACTGGTTCTAATTTATG 58.890 38.462 4.89 0.00 46.46 1.90
3377 3581 6.587206 TGTTAGATGATTCAATTGCCAACA 57.413 33.333 0.00 0.00 0.00 3.33
3378 3582 6.623486 TGTTAGATGATTCAATTGCCAACAG 58.377 36.000 0.00 0.00 0.00 3.16
3403 3607 8.861033 GCAATATCTTCATTTTGCTGATGTTA 57.139 30.769 0.00 0.00 41.35 2.41
3404 3608 8.749499 GCAATATCTTCATTTTGCTGATGTTAC 58.251 33.333 0.00 0.00 41.35 2.50
3419 3623 8.409371 TGCTGATGTTACTTGTTAAAATTCACA 58.591 29.630 0.00 0.00 0.00 3.58
3420 3624 9.243637 GCTGATGTTACTTGTTAAAATTCACAA 57.756 29.630 0.00 0.00 0.00 3.33
3457 3661 1.003233 AAGAAGCTTGCCTCGGTCC 60.003 57.895 2.10 0.00 0.00 4.46
3497 3701 7.878127 TGGATAAAACCTCAGTAAGAAGACAAG 59.122 37.037 0.00 0.00 0.00 3.16
3498 3702 7.334671 GGATAAAACCTCAGTAAGAAGACAAGG 59.665 40.741 0.00 0.00 33.14 3.61
3514 3718 9.391227 AGAAGACAAGGATCCAGAAATATCTAT 57.609 33.333 15.82 0.00 33.50 1.98
3568 3772 5.841810 TGGAAATGGTTTTTCTAACTGCTG 58.158 37.500 0.00 0.00 0.00 4.41
3572 3776 3.820557 TGGTTTTTCTAACTGCTGCTCT 58.179 40.909 0.00 0.00 0.00 4.09
3620 3824 3.196469 TGTTGCCAAACATTCAAACTCCA 59.804 39.130 0.00 0.00 41.41 3.86
3629 3833 9.108284 CCAAACATTCAAACTCCAACTTTTATT 57.892 29.630 0.00 0.00 0.00 1.40
3672 3876 1.268899 GGCAGGTGCTTATCATGCATC 59.731 52.381 0.00 0.00 43.06 3.91
3712 3916 6.783708 AGAGATACGAAACTGAGAGGAATT 57.216 37.500 0.00 0.00 0.00 2.17
3969 4181 3.782889 AGGAATGAAATGCTTAACGCC 57.217 42.857 0.00 0.00 38.05 5.68
3984 4196 1.301401 CGCCGTGAAGGGTTTCTCA 60.301 57.895 0.00 0.00 41.48 3.27
4005 4217 1.384191 GTCAGGGCAGAATGGGGTT 59.616 57.895 0.00 0.00 35.86 4.11
4017 4229 5.047377 GCAGAATGGGGTTTTTATCAACTCA 60.047 40.000 0.00 0.00 35.86 3.41
4023 4235 7.130681 TGGGGTTTTTATCAACTCATGTTTT 57.869 32.000 0.00 0.00 33.52 2.43
4026 4238 6.705825 GGGTTTTTATCAACTCATGTTTTGCT 59.294 34.615 0.00 0.00 33.52 3.91
4143 4357 3.829601 AGACAGTAGAAGGGAGAACACTG 59.170 47.826 0.00 0.00 39.38 3.66
4183 4397 1.225855 TGCACACAAGGACGATTGAC 58.774 50.000 0.00 0.00 34.20 3.18
4213 4427 7.349598 ACATGCCAGACTATTTATTCCTTCTT 58.650 34.615 0.00 0.00 0.00 2.52
4253 4470 3.624777 CTGGTGGTTAGCCTGATGAAAT 58.375 45.455 0.00 0.00 35.27 2.17
4288 4505 1.515088 CGACGTGCAGAGAATCGCT 60.515 57.895 0.00 0.00 42.67 4.93
4402 4619 4.767908 TCAAGGGGAGGCATCTCTAATAT 58.232 43.478 0.00 0.00 39.86 1.28
4467 4686 0.741915 GAGTGGGCACAACCGAAAAA 59.258 50.000 0.00 0.00 40.62 1.94
4566 4788 4.107051 GCCTCGCATGCAAACGCT 62.107 61.111 19.57 0.00 0.00 5.07
4591 4813 1.333931 GGCCCTCTGCGTTATTTTAGC 59.666 52.381 0.00 0.00 42.61 3.09
4601 4826 6.007936 TGCGTTATTTTAGCTTCACATGTT 57.992 33.333 0.00 0.00 0.00 2.71
4615 4840 6.647895 GCTTCACATGTTGATTCTTTCCATTT 59.352 34.615 0.00 0.00 32.84 2.32
4624 4849 5.867330 TGATTCTTTCCATTTGCCAATTGT 58.133 33.333 4.43 0.00 0.00 2.71
4732 4961 8.311109 TGAATAATGTGCTTAGTTCAGAGTGTA 58.689 33.333 0.00 0.00 0.00 2.90
4741 4970 4.120946 AGTTCAGAGTGTACTCCCTTCT 57.879 45.455 8.34 1.15 43.88 2.85
4759 4988 5.449314 CCCTTCTAGTCTAGTCATGTTCGTG 60.449 48.000 6.77 0.00 0.00 4.35
4816 5045 0.032952 TGCAACCGGACTGTACTCAC 59.967 55.000 9.46 0.00 0.00 3.51
4836 5065 1.614903 CCATGACTGCAACCATGTTGT 59.385 47.619 20.10 0.00 38.69 3.32
4841 5070 5.330455 TGACTGCAACCATGTTGTTTAAA 57.670 34.783 8.58 0.00 0.00 1.52
4842 5071 5.724328 TGACTGCAACCATGTTGTTTAAAA 58.276 33.333 8.58 0.00 0.00 1.52
4843 5072 5.809562 TGACTGCAACCATGTTGTTTAAAAG 59.190 36.000 8.58 1.43 0.00 2.27
4844 5073 5.729510 ACTGCAACCATGTTGTTTAAAAGT 58.270 33.333 8.58 1.92 0.00 2.66
4845 5074 6.868622 ACTGCAACCATGTTGTTTAAAAGTA 58.131 32.000 8.58 0.00 0.00 2.24
4905 5143 5.091261 AGGTTATTACAGTTCTCTGCCTG 57.909 43.478 0.00 0.00 44.77 4.85
4926 5164 4.650734 TGTATTCTTCATGTGCACCTTGA 58.349 39.130 15.69 14.57 0.00 3.02
5012 5250 1.678101 GCTATGGAAGACAATGGCACC 59.322 52.381 0.00 0.00 0.00 5.01
5019 5257 0.603707 AGACAATGGCACCACACTCG 60.604 55.000 0.00 0.00 0.00 4.18
5021 5259 0.465460 ACAATGGCACCACACTCGTT 60.465 50.000 0.00 0.00 0.00 3.85
5022 5260 0.667993 CAATGGCACCACACTCGTTT 59.332 50.000 0.00 0.00 0.00 3.60
5023 5261 1.066908 CAATGGCACCACACTCGTTTT 59.933 47.619 0.00 0.00 0.00 2.43
5024 5262 1.398692 ATGGCACCACACTCGTTTTT 58.601 45.000 0.00 0.00 0.00 1.94
5048 5286 8.134202 TTTTTCTTCAAAAAGGAGGATATCCC 57.866 34.615 18.56 9.67 38.03 3.85
5049 5287 7.180229 TTTTTCTTCAAAAAGGAGGATATCCCC 59.820 37.037 18.56 17.83 38.03 4.81
5054 5292 3.009714 GGAGGATATCCCCCGGCC 61.010 72.222 18.56 8.54 43.01 6.13
5055 5293 2.122954 GAGGATATCCCCCGGCCT 59.877 66.667 18.56 0.00 36.42 5.19
5056 5294 1.990614 GAGGATATCCCCCGGCCTC 60.991 68.421 18.56 6.31 38.45 4.70
5057 5295 2.122954 GGATATCCCCCGGCCTCT 59.877 66.667 11.02 0.00 0.00 3.69
5058 5296 2.294078 GGATATCCCCCGGCCTCTG 61.294 68.421 11.02 0.00 0.00 3.35
5059 5297 2.930562 ATATCCCCCGGCCTCTGC 60.931 66.667 0.00 0.00 0.00 4.26
5060 5298 3.792325 ATATCCCCCGGCCTCTGCA 62.792 63.158 0.00 0.00 40.13 4.41
5075 5313 3.762293 GCAATGGCACCACACTCA 58.238 55.556 0.00 0.00 40.72 3.41
5076 5314 2.269978 GCAATGGCACCACACTCAT 58.730 52.632 0.00 0.00 40.72 2.90
5077 5315 1.462616 GCAATGGCACCACACTCATA 58.537 50.000 0.00 0.00 40.72 2.15
5078 5316 1.402968 GCAATGGCACCACACTCATAG 59.597 52.381 0.00 0.00 40.72 2.23
5079 5317 1.402968 CAATGGCACCACACTCATAGC 59.597 52.381 0.00 0.00 0.00 2.97
5080 5318 0.107017 ATGGCACCACACTCATAGCC 60.107 55.000 0.00 0.00 42.32 3.93
5081 5319 1.200760 TGGCACCACACTCATAGCCT 61.201 55.000 0.00 0.00 42.46 4.58
5098 5336 2.431782 AGCCTGAACAAAGTGTGCAAAT 59.568 40.909 0.00 0.00 35.05 2.32
5101 5339 3.798337 CCTGAACAAAGTGTGCAAATCAC 59.202 43.478 0.00 0.00 45.82 3.06
5113 5351 2.223782 TGCAAATCACAACAGCAAGGTC 60.224 45.455 0.00 0.00 31.42 3.85
5114 5352 2.223782 GCAAATCACAACAGCAAGGTCA 60.224 45.455 0.00 0.00 0.00 4.02
5163 5401 8.803799 GTTCACGACAACTTTGTTAATGAAAAT 58.196 29.630 13.70 0.00 42.43 1.82
5192 5431 6.959361 TCAAGTTTCTGAACAAAGATACTGC 58.041 36.000 0.00 0.00 38.15 4.40
5193 5432 5.597813 AGTTTCTGAACAAAGATACTGCG 57.402 39.130 0.00 0.00 37.18 5.18
5194 5433 5.057149 AGTTTCTGAACAAAGATACTGCGT 58.943 37.500 0.00 0.00 37.18 5.24
5235 5474 1.228154 GAAACTGGAAGGCGGTGGT 60.228 57.895 0.00 0.00 39.30 4.16
5279 5518 4.704057 CCTGAATTTAAAGAAGCCAGCTCT 59.296 41.667 0.00 0.00 0.00 4.09
5290 5529 1.849976 GCCAGCTCTTGCACTGTGAC 61.850 60.000 12.86 3.63 42.74 3.67
5291 5530 0.533531 CCAGCTCTTGCACTGTGACA 60.534 55.000 12.86 6.40 42.74 3.58
5293 5532 1.672363 CAGCTCTTGCACTGTGACAAA 59.328 47.619 12.86 1.59 42.74 2.83
5294 5533 1.672881 AGCTCTTGCACTGTGACAAAC 59.327 47.619 12.86 7.75 42.74 2.93
5295 5534 1.268743 GCTCTTGCACTGTGACAAACC 60.269 52.381 12.86 3.51 39.41 3.27
5296 5535 2.016318 CTCTTGCACTGTGACAAACCA 58.984 47.619 12.86 0.00 0.00 3.67
5297 5536 2.620115 CTCTTGCACTGTGACAAACCAT 59.380 45.455 12.86 0.00 0.00 3.55
5298 5537 3.023119 TCTTGCACTGTGACAAACCATT 58.977 40.909 12.86 0.00 0.00 3.16
5299 5538 3.066621 TCTTGCACTGTGACAAACCATTC 59.933 43.478 12.86 0.00 0.00 2.67
5300 5539 2.653726 TGCACTGTGACAAACCATTCT 58.346 42.857 12.86 0.00 0.00 2.40
5301 5540 3.023119 TGCACTGTGACAAACCATTCTT 58.977 40.909 12.86 0.00 0.00 2.52
5303 5542 3.316308 GCACTGTGACAAACCATTCTTCT 59.684 43.478 12.86 0.00 0.00 2.85
5304 5543 4.555511 GCACTGTGACAAACCATTCTTCTC 60.556 45.833 12.86 0.00 0.00 2.87
5305 5544 4.818546 CACTGTGACAAACCATTCTTCTCT 59.181 41.667 0.32 0.00 0.00 3.10
5306 5545 4.818546 ACTGTGACAAACCATTCTTCTCTG 59.181 41.667 0.00 0.00 0.00 3.35
5308 5547 4.141505 TGTGACAAACCATTCTTCTCTGGA 60.142 41.667 0.00 0.00 36.35 3.86
5309 5548 4.821805 GTGACAAACCATTCTTCTCTGGAA 59.178 41.667 0.00 0.00 36.35 3.53
5310 5549 5.299279 GTGACAAACCATTCTTCTCTGGAAA 59.701 40.000 0.00 0.00 36.35 3.13
5311 5550 5.532406 TGACAAACCATTCTTCTCTGGAAAG 59.468 40.000 0.00 0.00 36.35 2.62
5312 5551 5.694995 ACAAACCATTCTTCTCTGGAAAGA 58.305 37.500 0.00 0.00 36.35 2.52
5313 5552 5.532779 ACAAACCATTCTTCTCTGGAAAGAC 59.467 40.000 0.00 0.00 36.35 3.01
5314 5553 4.982241 ACCATTCTTCTCTGGAAAGACA 57.018 40.909 0.00 0.00 36.35 3.41
5315 5554 5.310409 ACCATTCTTCTCTGGAAAGACAA 57.690 39.130 0.00 0.00 36.35 3.18
5316 5555 5.694995 ACCATTCTTCTCTGGAAAGACAAA 58.305 37.500 0.00 0.00 36.35 2.83
5317 5556 6.129179 ACCATTCTTCTCTGGAAAGACAAAA 58.871 36.000 0.00 0.00 36.35 2.44
5318 5557 6.779539 ACCATTCTTCTCTGGAAAGACAAAAT 59.220 34.615 0.00 0.00 36.35 1.82
5319 5558 7.288621 ACCATTCTTCTCTGGAAAGACAAAATT 59.711 33.333 0.00 0.00 36.35 1.82
5320 5559 7.811713 CCATTCTTCTCTGGAAAGACAAAATTC 59.188 37.037 0.00 0.00 34.24 2.17
5321 5560 6.884280 TCTTCTCTGGAAAGACAAAATTCC 57.116 37.500 0.00 0.00 44.38 3.01
5322 5561 5.770162 TCTTCTCTGGAAAGACAAAATTCCC 59.230 40.000 2.36 0.00 43.66 3.97
5323 5562 5.060427 TCTCTGGAAAGACAAAATTCCCA 57.940 39.130 2.36 0.00 43.66 4.37
5324 5563 5.072741 TCTCTGGAAAGACAAAATTCCCAG 58.927 41.667 0.00 0.00 43.66 4.45
5325 5564 5.060427 TCTGGAAAGACAAAATTCCCAGA 57.940 39.130 0.00 0.00 43.66 3.86
5326 5565 5.072741 TCTGGAAAGACAAAATTCCCAGAG 58.927 41.667 0.00 0.00 43.66 3.35
5327 5566 3.573967 TGGAAAGACAAAATTCCCAGAGC 59.426 43.478 2.36 0.00 43.66 4.09
5328 5567 3.829026 GGAAAGACAAAATTCCCAGAGCT 59.171 43.478 0.00 0.00 39.36 4.09
5329 5568 4.281941 GGAAAGACAAAATTCCCAGAGCTT 59.718 41.667 0.00 0.00 39.36 3.74
5337 5576 6.042437 ACAAAATTCCCAGAGCTTCATTCTTT 59.958 34.615 0.00 0.00 0.00 2.52
5365 5604 6.757478 CCATTGATGATTCTCTATCCATCGAG 59.243 42.308 0.00 0.00 31.87 4.04
5389 5628 8.803397 AGAGATTTTGTGATTCTGATGATTGA 57.197 30.769 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.909267 ACAATTTGTCAGCTTTCTTTTTAAGC 58.091 30.769 0.00 0.00 46.47 3.09
31 32 0.602562 CATGCTTCCAGGCCGAAAAA 59.397 50.000 0.00 0.00 0.00 1.94
32 33 0.539438 ACATGCTTCCAGGCCGAAAA 60.539 50.000 0.00 0.00 0.00 2.29
33 34 0.326595 TACATGCTTCCAGGCCGAAA 59.673 50.000 0.00 0.00 0.00 3.46
34 35 0.546122 ATACATGCTTCCAGGCCGAA 59.454 50.000 0.00 0.00 0.00 4.30
35 36 1.344438 CTATACATGCTTCCAGGCCGA 59.656 52.381 0.00 0.00 0.00 5.54
36 37 1.070758 ACTATACATGCTTCCAGGCCG 59.929 52.381 0.00 0.00 0.00 6.13
37 38 2.880890 CAACTATACATGCTTCCAGGCC 59.119 50.000 0.00 0.00 0.00 5.19
38 39 2.291741 GCAACTATACATGCTTCCAGGC 59.708 50.000 0.00 0.00 39.46 4.85
39 40 2.880890 GGCAACTATACATGCTTCCAGG 59.119 50.000 0.00 0.00 42.20 4.45
40 41 2.545526 CGGCAACTATACATGCTTCCAG 59.454 50.000 0.00 0.00 42.20 3.86
41 42 2.560504 CGGCAACTATACATGCTTCCA 58.439 47.619 0.00 0.00 42.20 3.53
42 43 1.264288 GCGGCAACTATACATGCTTCC 59.736 52.381 0.00 0.00 42.20 3.46
43 44 2.213499 AGCGGCAACTATACATGCTTC 58.787 47.619 1.45 0.00 42.20 3.86
44 45 2.332063 AGCGGCAACTATACATGCTT 57.668 45.000 1.45 0.00 42.20 3.91
45 46 3.131396 GTTAGCGGCAACTATACATGCT 58.869 45.455 1.45 0.00 42.20 3.79
46 47 2.869801 TGTTAGCGGCAACTATACATGC 59.130 45.455 1.45 0.00 41.82 4.06
47 48 5.064707 ACTTTGTTAGCGGCAACTATACATG 59.935 40.000 1.45 0.00 0.00 3.21
48 49 5.183228 ACTTTGTTAGCGGCAACTATACAT 58.817 37.500 1.45 0.00 0.00 2.29
49 50 4.571919 ACTTTGTTAGCGGCAACTATACA 58.428 39.130 1.45 0.00 0.00 2.29
50 51 5.809051 AGTACTTTGTTAGCGGCAACTATAC 59.191 40.000 1.45 6.70 0.00 1.47
51 52 5.969423 AGTACTTTGTTAGCGGCAACTATA 58.031 37.500 1.45 0.00 0.00 1.31
52 53 4.828829 AGTACTTTGTTAGCGGCAACTAT 58.171 39.130 1.45 0.00 0.00 2.12
53 54 4.240096 GAGTACTTTGTTAGCGGCAACTA 58.760 43.478 1.45 0.00 0.00 2.24
54 55 3.064931 GAGTACTTTGTTAGCGGCAACT 58.935 45.455 1.45 0.00 0.00 3.16
55 56 2.159037 GGAGTACTTTGTTAGCGGCAAC 59.841 50.000 1.45 5.59 0.00 4.17
56 57 2.419667 GGAGTACTTTGTTAGCGGCAA 58.580 47.619 1.45 0.00 0.00 4.52
57 58 1.338389 GGGAGTACTTTGTTAGCGGCA 60.338 52.381 1.45 0.00 0.00 5.69
58 59 1.066358 AGGGAGTACTTTGTTAGCGGC 60.066 52.381 0.00 0.00 0.00 6.53
59 60 2.734492 CGAGGGAGTACTTTGTTAGCGG 60.734 54.545 0.00 0.00 0.00 5.52
60 61 2.527100 CGAGGGAGTACTTTGTTAGCG 58.473 52.381 0.00 0.00 0.00 4.26
61 62 2.233186 ACCGAGGGAGTACTTTGTTAGC 59.767 50.000 0.00 0.00 0.00 3.09
62 63 3.119209 GGACCGAGGGAGTACTTTGTTAG 60.119 52.174 0.00 0.00 0.00 2.34
63 64 2.827921 GGACCGAGGGAGTACTTTGTTA 59.172 50.000 0.00 0.00 0.00 2.41
64 65 1.622312 GGACCGAGGGAGTACTTTGTT 59.378 52.381 0.00 0.00 0.00 2.83
65 66 1.264295 GGACCGAGGGAGTACTTTGT 58.736 55.000 0.00 0.00 0.00 2.83
66 67 0.535797 GGGACCGAGGGAGTACTTTG 59.464 60.000 0.00 0.00 0.00 2.77
67 68 0.115745 TGGGACCGAGGGAGTACTTT 59.884 55.000 0.00 0.00 0.00 2.66
68 69 0.338814 ATGGGACCGAGGGAGTACTT 59.661 55.000 0.00 0.00 0.00 2.24
69 70 1.229131 TATGGGACCGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
70 71 2.077687 TTATGGGACCGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
71 72 4.687262 ATATTATGGGACCGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
72 73 3.562108 ATATTATGGGACCGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
73 74 3.380637 CGTATATTATGGGACCGAGGGAG 59.619 52.174 0.00 0.00 0.00 4.30
74 75 3.359033 CGTATATTATGGGACCGAGGGA 58.641 50.000 0.00 0.00 0.00 4.20
75 76 2.429610 CCGTATATTATGGGACCGAGGG 59.570 54.545 0.00 0.00 0.00 4.30
76 77 2.159142 GCCGTATATTATGGGACCGAGG 60.159 54.545 0.00 0.00 35.33 4.63
77 78 2.758979 AGCCGTATATTATGGGACCGAG 59.241 50.000 0.00 0.00 35.33 4.63
78 79 2.811410 AGCCGTATATTATGGGACCGA 58.189 47.619 0.00 0.00 35.33 4.69
79 80 3.259064 CAAGCCGTATATTATGGGACCG 58.741 50.000 1.07 0.00 35.33 4.79
80 81 3.007635 GCAAGCCGTATATTATGGGACC 58.992 50.000 1.07 0.00 35.33 4.46
81 82 3.670625 TGCAAGCCGTATATTATGGGAC 58.329 45.455 0.00 0.00 35.33 4.46
82 83 4.359434 TTGCAAGCCGTATATTATGGGA 57.641 40.909 0.00 0.00 35.33 4.37
83 84 5.446143 TTTTGCAAGCCGTATATTATGGG 57.554 39.130 0.00 0.00 35.33 4.00
84 85 5.398122 CGTTTTTGCAAGCCGTATATTATGG 59.602 40.000 0.00 0.00 37.91 2.74
85 86 5.968848 ACGTTTTTGCAAGCCGTATATTATG 59.031 36.000 15.50 0.00 0.00 1.90
86 87 6.126568 ACGTTTTTGCAAGCCGTATATTAT 57.873 33.333 15.50 0.00 0.00 1.28
87 88 5.548706 ACGTTTTTGCAAGCCGTATATTA 57.451 34.783 15.50 0.00 0.00 0.98
88 89 4.428615 ACGTTTTTGCAAGCCGTATATT 57.571 36.364 15.50 0.00 0.00 1.28
89 90 4.428615 AACGTTTTTGCAAGCCGTATAT 57.571 36.364 16.82 3.51 0.00 0.86
90 91 3.900388 AACGTTTTTGCAAGCCGTATA 57.100 38.095 16.82 0.00 0.00 1.47
91 92 2.785713 AACGTTTTTGCAAGCCGTAT 57.214 40.000 16.82 7.89 0.00 3.06
92 93 2.563471 AAACGTTTTTGCAAGCCGTA 57.437 40.000 7.96 0.00 0.00 4.02
93 94 1.715993 AAAACGTTTTTGCAAGCCGT 58.284 40.000 20.26 12.47 0.00 5.68
94 95 5.755330 ATATAAAACGTTTTTGCAAGCCG 57.245 34.783 29.42 6.10 0.00 5.52
95 96 6.789877 CACAATATAAAACGTTTTTGCAAGCC 59.210 34.615 29.42 0.00 0.00 4.35
96 97 7.559845 TCACAATATAAAACGTTTTTGCAAGC 58.440 30.769 29.42 0.00 0.00 4.01
97 98 7.735586 GCTCACAATATAAAACGTTTTTGCAAG 59.264 33.333 29.42 20.35 0.00 4.01
98 99 7.306866 GGCTCACAATATAAAACGTTTTTGCAA 60.307 33.333 29.42 13.49 0.00 4.08
99 100 6.144724 GGCTCACAATATAAAACGTTTTTGCA 59.855 34.615 29.42 13.85 0.00 4.08
100 101 6.521898 GGCTCACAATATAAAACGTTTTTGC 58.478 36.000 29.42 17.74 0.00 3.68
101 102 6.183359 CCGGCTCACAATATAAAACGTTTTTG 60.183 38.462 29.42 22.70 0.00 2.44
102 103 5.859648 CCGGCTCACAATATAAAACGTTTTT 59.140 36.000 29.42 19.03 0.00 1.94
103 104 5.181622 TCCGGCTCACAATATAAAACGTTTT 59.818 36.000 27.65 27.65 0.00 2.43
104 105 4.696402 TCCGGCTCACAATATAAAACGTTT 59.304 37.500 7.96 7.96 0.00 3.60
105 106 4.255301 TCCGGCTCACAATATAAAACGTT 58.745 39.130 0.00 0.00 0.00 3.99
106 107 3.864243 TCCGGCTCACAATATAAAACGT 58.136 40.909 0.00 0.00 0.00 3.99
107 108 3.247648 CCTCCGGCTCACAATATAAAACG 59.752 47.826 0.00 0.00 0.00 3.60
108 109 3.564225 CCCTCCGGCTCACAATATAAAAC 59.436 47.826 0.00 0.00 0.00 2.43
109 110 3.456644 TCCCTCCGGCTCACAATATAAAA 59.543 43.478 0.00 0.00 0.00 1.52
110 111 3.042682 TCCCTCCGGCTCACAATATAAA 58.957 45.455 0.00 0.00 0.00 1.40
111 112 2.632996 CTCCCTCCGGCTCACAATATAA 59.367 50.000 0.00 0.00 0.00 0.98
112 113 2.248248 CTCCCTCCGGCTCACAATATA 58.752 52.381 0.00 0.00 0.00 0.86
113 114 1.051812 CTCCCTCCGGCTCACAATAT 58.948 55.000 0.00 0.00 0.00 1.28
114 115 0.325296 ACTCCCTCCGGCTCACAATA 60.325 55.000 0.00 0.00 0.00 1.90
115 116 0.325296 TACTCCCTCCGGCTCACAAT 60.325 55.000 0.00 0.00 0.00 2.71
116 117 0.543410 TTACTCCCTCCGGCTCACAA 60.543 55.000 0.00 0.00 0.00 3.33
117 118 1.077805 TTACTCCCTCCGGCTCACA 59.922 57.895 0.00 0.00 0.00 3.58
118 119 0.971447 AGTTACTCCCTCCGGCTCAC 60.971 60.000 0.00 0.00 0.00 3.51
119 120 0.627451 TAGTTACTCCCTCCGGCTCA 59.373 55.000 0.00 0.00 0.00 4.26
120 121 1.772836 TTAGTTACTCCCTCCGGCTC 58.227 55.000 0.00 0.00 0.00 4.70
121 122 2.473576 ATTAGTTACTCCCTCCGGCT 57.526 50.000 0.00 0.00 0.00 5.52
122 123 3.244009 GGTTATTAGTTACTCCCTCCGGC 60.244 52.174 0.00 0.00 0.00 6.13
123 124 3.962718 TGGTTATTAGTTACTCCCTCCGG 59.037 47.826 0.00 0.00 0.00 5.14
124 125 4.648307 ACTGGTTATTAGTTACTCCCTCCG 59.352 45.833 0.00 0.00 0.00 4.63
125 126 6.838090 AGTACTGGTTATTAGTTACTCCCTCC 59.162 42.308 0.00 0.00 0.00 4.30
126 127 7.683945 GCAGTACTGGTTATTAGTTACTCCCTC 60.684 44.444 23.95 0.00 0.00 4.30
127 128 6.097981 GCAGTACTGGTTATTAGTTACTCCCT 59.902 42.308 23.95 0.00 0.00 4.20
128 129 6.127253 TGCAGTACTGGTTATTAGTTACTCCC 60.127 42.308 23.95 2.00 0.00 4.30
129 130 6.870769 TGCAGTACTGGTTATTAGTTACTCC 58.129 40.000 23.95 2.37 0.00 3.85
130 131 7.277319 GGTTGCAGTACTGGTTATTAGTTACTC 59.723 40.741 23.95 2.99 0.00 2.59
131 132 7.101700 GGTTGCAGTACTGGTTATTAGTTACT 58.898 38.462 23.95 0.00 0.00 2.24
132 133 6.875195 TGGTTGCAGTACTGGTTATTAGTTAC 59.125 38.462 23.95 3.61 0.00 2.50
133 134 7.006865 TGGTTGCAGTACTGGTTATTAGTTA 57.993 36.000 23.95 0.00 0.00 2.24
134 135 5.871834 TGGTTGCAGTACTGGTTATTAGTT 58.128 37.500 23.95 0.00 0.00 2.24
135 136 5.492855 TGGTTGCAGTACTGGTTATTAGT 57.507 39.130 23.95 0.00 0.00 2.24
136 137 5.123344 GGTTGGTTGCAGTACTGGTTATTAG 59.877 44.000 23.95 0.00 0.00 1.73
137 138 5.005094 GGTTGGTTGCAGTACTGGTTATTA 58.995 41.667 23.95 0.00 0.00 0.98
138 139 3.824443 GGTTGGTTGCAGTACTGGTTATT 59.176 43.478 23.95 0.00 0.00 1.40
139 140 3.181438 TGGTTGGTTGCAGTACTGGTTAT 60.181 43.478 23.95 0.00 0.00 1.89
140 141 2.172930 TGGTTGGTTGCAGTACTGGTTA 59.827 45.455 23.95 0.00 0.00 2.85
141 142 1.064314 TGGTTGGTTGCAGTACTGGTT 60.064 47.619 23.95 0.00 0.00 3.67
182 183 3.417101 TGTCCATTTCGGTGTTAATGCT 58.583 40.909 0.00 0.00 35.57 3.79
206 207 0.036164 CCCTCCACCGACATGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
294 298 5.786311 TGTATGTGGTACAAGTACAACTCC 58.214 41.667 16.49 7.07 44.16 3.85
305 309 3.883489 CCTCTCTCGATGTATGTGGTACA 59.117 47.826 0.00 0.00 46.73 2.90
306 310 3.304794 GCCTCTCTCGATGTATGTGGTAC 60.305 52.174 0.00 0.00 0.00 3.34
307 311 2.885266 GCCTCTCTCGATGTATGTGGTA 59.115 50.000 0.00 0.00 0.00 3.25
308 312 1.683917 GCCTCTCTCGATGTATGTGGT 59.316 52.381 0.00 0.00 0.00 4.16
310 314 1.683385 TGGCCTCTCTCGATGTATGTG 59.317 52.381 3.32 0.00 0.00 3.21
312 316 2.930023 GCATGGCCTCTCTCGATGTATG 60.930 54.545 3.32 0.00 0.00 2.39
314 318 0.676184 GCATGGCCTCTCTCGATGTA 59.324 55.000 3.32 0.00 0.00 2.29
315 319 1.047596 AGCATGGCCTCTCTCGATGT 61.048 55.000 3.32 0.00 0.00 3.06
316 320 0.106335 AAGCATGGCCTCTCTCGATG 59.894 55.000 3.32 0.00 0.00 3.84
317 321 0.835941 AAAGCATGGCCTCTCTCGAT 59.164 50.000 3.32 0.00 0.00 3.59
318 322 0.176680 GAAAGCATGGCCTCTCTCGA 59.823 55.000 3.32 0.00 0.00 4.04
319 323 0.107993 TGAAAGCATGGCCTCTCTCG 60.108 55.000 3.32 0.00 0.00 4.04
320 324 2.345124 ATGAAAGCATGGCCTCTCTC 57.655 50.000 3.32 0.00 32.31 3.20
321 325 2.822707 AATGAAAGCATGGCCTCTCT 57.177 45.000 3.32 0.00 34.26 3.10
322 326 3.022406 AGAAATGAAAGCATGGCCTCTC 58.978 45.455 3.32 0.00 34.26 3.20
323 327 2.758979 CAGAAATGAAAGCATGGCCTCT 59.241 45.455 3.32 0.00 34.26 3.69
337 341 3.946402 TGCAACACAACGTACAGAAATG 58.054 40.909 0.00 0.00 0.00 2.32
383 390 7.067532 TGTTCCGCTAGTAAAATTACACATG 57.932 36.000 6.13 0.00 36.12 3.21
390 397 4.850680 TGGGATGTTCCGCTAGTAAAATT 58.149 39.130 0.00 0.00 37.43 1.82
417 424 2.418976 GACACGCAAATTTAGGAGGGTC 59.581 50.000 0.14 0.14 30.36 4.46
423 430 1.743394 GGGAGGACACGCAAATTTAGG 59.257 52.381 0.00 0.00 0.00 2.69
425 432 2.570415 TGGGAGGACACGCAAATTTA 57.430 45.000 0.00 0.00 0.00 1.40
426 433 1.923356 ATGGGAGGACACGCAAATTT 58.077 45.000 0.00 0.00 36.41 1.82
428 435 2.752903 GTTTATGGGAGGACACGCAAAT 59.247 45.455 0.00 0.00 36.41 2.32
435 442 5.398236 TGGATTTTTGTTTATGGGAGGACA 58.602 37.500 0.00 0.00 0.00 4.02
446 453 2.807837 GCAGGCAGCTGGATTTTTGTTT 60.808 45.455 17.12 0.00 41.15 2.83
544 602 2.047274 TGAAAAGCTCGGCTCGGG 60.047 61.111 0.00 0.00 38.25 5.14
546 604 1.667830 TGGTGAAAAGCTCGGCTCG 60.668 57.895 0.00 0.00 38.25 5.03
551 609 0.537371 AAGGGGTGGTGAAAAGCTCG 60.537 55.000 0.00 0.00 0.00 5.03
587 654 1.664965 GTGCGGGACTGTCACTGAC 60.665 63.158 8.63 1.86 0.00 3.51
593 660 0.591659 GAAAAAGGTGCGGGACTGTC 59.408 55.000 0.00 0.00 0.00 3.51
594 661 0.182775 AGAAAAAGGTGCGGGACTGT 59.817 50.000 0.00 0.00 0.00 3.55
595 662 1.266989 GAAGAAAAAGGTGCGGGACTG 59.733 52.381 0.00 0.00 0.00 3.51
596 663 1.143073 AGAAGAAAAAGGTGCGGGACT 59.857 47.619 0.00 0.00 0.00 3.85
597 664 1.605753 AGAAGAAAAAGGTGCGGGAC 58.394 50.000 0.00 0.00 0.00 4.46
598 665 2.227194 GAAGAAGAAAAAGGTGCGGGA 58.773 47.619 0.00 0.00 0.00 5.14
602 669 2.558795 GGGAGGAAGAAGAAAAAGGTGC 59.441 50.000 0.00 0.00 0.00 5.01
637 727 0.172803 GGAGGCAAGCAAAGCATCTG 59.827 55.000 9.04 0.00 42.03 2.90
645 735 2.058125 TACGGTTGGGAGGCAAGCAA 62.058 55.000 0.00 0.00 0.00 3.91
646 736 2.058125 TTACGGTTGGGAGGCAAGCA 62.058 55.000 0.00 0.00 0.00 3.91
647 737 1.302993 TTACGGTTGGGAGGCAAGC 60.303 57.895 0.00 0.00 0.00 4.01
648 738 1.296056 CGTTACGGTTGGGAGGCAAG 61.296 60.000 0.00 0.00 0.00 4.01
790 889 2.653726 TGGCTGCTGACAAAAGAAAGA 58.346 42.857 0.00 0.00 0.00 2.52
791 890 3.655276 ATGGCTGCTGACAAAAGAAAG 57.345 42.857 2.14 0.00 33.27 2.62
792 891 3.719924 CAATGGCTGCTGACAAAAGAAA 58.280 40.909 2.14 0.00 33.27 2.52
793 892 3.374220 CAATGGCTGCTGACAAAAGAA 57.626 42.857 2.14 0.00 33.27 2.52
876 987 4.404654 GCGGAAGTGGCCAAAGCG 62.405 66.667 7.24 0.00 41.24 4.68
912 1027 3.324556 GGAATGGATCTGAAGAGGGAGAG 59.675 52.174 0.00 0.00 0.00 3.20
913 1028 3.051496 AGGAATGGATCTGAAGAGGGAGA 60.051 47.826 0.00 0.00 0.00 3.71
914 1029 3.316501 AGGAATGGATCTGAAGAGGGAG 58.683 50.000 0.00 0.00 0.00 4.30
915 1030 3.051496 AGAGGAATGGATCTGAAGAGGGA 60.051 47.826 0.00 0.00 0.00 4.20
916 1031 3.316501 AGAGGAATGGATCTGAAGAGGG 58.683 50.000 0.00 0.00 0.00 4.30
917 1032 3.324556 GGAGAGGAATGGATCTGAAGAGG 59.675 52.174 0.00 0.00 0.00 3.69
918 1033 3.324556 GGGAGAGGAATGGATCTGAAGAG 59.675 52.174 0.00 0.00 0.00 2.85
919 1034 3.310879 TGGGAGAGGAATGGATCTGAAGA 60.311 47.826 0.00 0.00 0.00 2.87
920 1035 3.044156 TGGGAGAGGAATGGATCTGAAG 58.956 50.000 0.00 0.00 0.00 3.02
921 1036 3.044156 CTGGGAGAGGAATGGATCTGAA 58.956 50.000 0.00 0.00 0.00 3.02
922 1037 2.687297 CTGGGAGAGGAATGGATCTGA 58.313 52.381 0.00 0.00 0.00 3.27
923 1038 1.072015 GCTGGGAGAGGAATGGATCTG 59.928 57.143 0.00 0.00 0.00 2.90
969 1084 4.186433 AAGCTCTCTCGCGCCTCG 62.186 66.667 0.00 0.00 40.15 4.63
971 1086 3.062500 CTCAAGCTCTCTCGCGCCT 62.063 63.158 0.00 0.00 34.40 5.52
973 1088 2.581953 CCTCAAGCTCTCTCGCGC 60.582 66.667 0.00 0.00 34.40 6.86
976 1091 1.391157 CCCCTCCTCAAGCTCTCTCG 61.391 65.000 0.00 0.00 0.00 4.04
977 1092 0.032615 TCCCCTCCTCAAGCTCTCTC 60.033 60.000 0.00 0.00 0.00 3.20
978 1093 0.032217 CTCCCCTCCTCAAGCTCTCT 60.032 60.000 0.00 0.00 0.00 3.10
979 1094 1.685355 GCTCCCCTCCTCAAGCTCTC 61.685 65.000 0.00 0.00 0.00 3.20
980 1095 1.688884 GCTCCCCTCCTCAAGCTCT 60.689 63.158 0.00 0.00 0.00 4.09
981 1096 2.741055 GGCTCCCCTCCTCAAGCTC 61.741 68.421 0.00 0.00 35.12 4.09
982 1097 2.690510 GGCTCCCCTCCTCAAGCT 60.691 66.667 0.00 0.00 35.12 3.74
983 1098 2.381941 ATGGCTCCCCTCCTCAAGC 61.382 63.158 0.00 0.00 0.00 4.01
984 1099 1.530771 CATGGCTCCCCTCCTCAAG 59.469 63.158 0.00 0.00 0.00 3.02
986 1101 2.367377 CCATGGCTCCCCTCCTCA 60.367 66.667 0.00 0.00 0.00 3.86
989 1104 3.023735 AACCCATGGCTCCCCTCC 61.024 66.667 6.09 0.00 0.00 4.30
991 1106 3.023735 GGAACCCATGGCTCCCCT 61.024 66.667 16.83 0.00 0.00 4.79
1014 1131 1.293498 GAGGAGCACGGCAAGAAGA 59.707 57.895 0.00 0.00 0.00 2.87
1074 1191 2.048597 TAGACCTGCGTGCCGTTG 60.049 61.111 0.00 0.00 0.00 4.10
1144 1261 4.899239 CGCGGACTGGATGAGGGC 62.899 72.222 0.00 0.00 0.00 5.19
1193 1310 1.357761 GGAACAATTCTGGGGGAGGAA 59.642 52.381 0.00 0.00 0.00 3.36
1194 1311 0.999712 GGAACAATTCTGGGGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
1199 1316 1.467920 GCAGAGGAACAATTCTGGGG 58.532 55.000 3.94 0.00 40.85 4.96
1265 1419 1.587568 GCAAGCATGTGACATGGCA 59.412 52.632 25.22 0.00 0.00 4.92
1292 1446 2.857575 ATCACGCGCCTCATTGAGCA 62.858 55.000 5.73 0.00 0.00 4.26
1295 1449 2.463620 GCATCACGCGCCTCATTGA 61.464 57.895 5.73 0.52 0.00 2.57
1364 1518 4.309933 TCTACGGCAATAGCAATCAGATG 58.690 43.478 0.00 0.00 44.61 2.90
1382 1536 5.011533 ACATGAGCTATCACAATCCCTCTAC 59.988 44.000 0.00 0.00 38.57 2.59
1426 1588 6.428159 CACTTAATCAACAGAGCACCTAAGTT 59.572 38.462 0.00 0.00 0.00 2.66
1474 1644 8.993121 CATGCTACTTATACCAAACAATAGGAG 58.007 37.037 0.00 0.00 0.00 3.69
1475 1645 8.491134 ACATGCTACTTATACCAAACAATAGGA 58.509 33.333 0.00 0.00 0.00 2.94
1476 1646 8.559536 CACATGCTACTTATACCAAACAATAGG 58.440 37.037 0.00 0.00 0.00 2.57
1611 1797 3.550820 ACACAATTCACAGCCAACAGTA 58.449 40.909 0.00 0.00 0.00 2.74
1678 1864 2.241430 GTGCCCAACTATTTAGGACCCT 59.759 50.000 0.00 0.00 0.00 4.34
1679 1865 2.651455 GTGCCCAACTATTTAGGACCC 58.349 52.381 0.00 0.00 0.00 4.46
1699 1885 0.817634 TGCTTCGTGTTTCTGTGGGG 60.818 55.000 0.00 0.00 0.00 4.96
1702 1888 3.673746 TTCTTGCTTCGTGTTTCTGTG 57.326 42.857 0.00 0.00 0.00 3.66
1719 1905 8.953368 AAAACTTCAAATCTTGAGCAATTTCT 57.047 26.923 0.00 0.00 41.38 2.52
1742 1928 2.063266 GTTCAGCACGACCATACGAAA 58.937 47.619 0.00 0.00 37.03 3.46
1746 1932 0.721718 GCAGTTCAGCACGACCATAC 59.278 55.000 0.00 0.00 0.00 2.39
1749 1935 1.595109 CAGCAGTTCAGCACGACCA 60.595 57.895 0.00 0.00 36.85 4.02
1752 1938 1.882912 AAATCAGCAGTTCAGCACGA 58.117 45.000 0.00 0.00 36.85 4.35
1753 1939 5.469373 TTATAAATCAGCAGTTCAGCACG 57.531 39.130 0.00 0.00 36.85 5.34
1813 1999 4.700213 GCCAGTAACAAGAGCCTTATTTGA 59.300 41.667 0.00 0.00 0.00 2.69
1822 2008 1.068954 GCAGTTGCCAGTAACAAGAGC 60.069 52.381 1.48 0.00 33.02 4.09
1827 2013 1.680735 CCAAAGCAGTTGCCAGTAACA 59.319 47.619 0.00 0.00 43.38 2.41
1833 2019 3.894427 TCTAAAATCCAAAGCAGTTGCCA 59.106 39.130 0.00 0.00 43.38 4.92
1868 2054 7.373493 ACTCCTGAAGCAAAACATATTTCAAG 58.627 34.615 0.00 0.00 0.00 3.02
1878 2064 6.863645 GGAAAGAATTACTCCTGAAGCAAAAC 59.136 38.462 0.00 0.00 0.00 2.43
1881 2067 5.630121 TGGAAAGAATTACTCCTGAAGCAA 58.370 37.500 0.00 0.00 0.00 3.91
1940 2126 3.474600 CATCAGTATTTAGCAGCAGCCT 58.525 45.455 0.00 0.00 43.56 4.58
1942 2128 2.877168 AGCATCAGTATTTAGCAGCAGC 59.123 45.455 0.00 0.00 42.56 5.25
1948 2134 7.442364 TCATGGAAGTAAGCATCAGTATTTAGC 59.558 37.037 0.00 0.00 0.00 3.09
1949 2135 8.893219 TCATGGAAGTAAGCATCAGTATTTAG 57.107 34.615 0.00 0.00 0.00 1.85
1950 2136 9.276590 CATCATGGAAGTAAGCATCAGTATTTA 57.723 33.333 0.00 0.00 0.00 1.40
1951 2137 7.994911 TCATCATGGAAGTAAGCATCAGTATTT 59.005 33.333 0.00 0.00 0.00 1.40
1952 2138 7.443575 GTCATCATGGAAGTAAGCATCAGTATT 59.556 37.037 0.00 0.00 0.00 1.89
1975 2161 6.413892 TCCAAGCATACTGTAATGATTGTCA 58.586 36.000 18.05 8.66 46.70 3.58
1976 2162 6.925610 TCCAAGCATACTGTAATGATTGTC 57.074 37.500 18.05 2.08 46.70 3.18
1977 2163 6.263842 CCATCCAAGCATACTGTAATGATTGT 59.736 38.462 18.05 6.55 46.70 2.71
1979 2165 6.604171 TCCATCCAAGCATACTGTAATGATT 58.396 36.000 0.00 0.00 35.95 2.57
1980 2166 6.191657 TCCATCCAAGCATACTGTAATGAT 57.808 37.500 0.00 0.00 0.00 2.45
1981 2167 5.628797 TCCATCCAAGCATACTGTAATGA 57.371 39.130 0.00 0.00 0.00 2.57
1982 2168 5.278169 GCTTCCATCCAAGCATACTGTAATG 60.278 44.000 0.26 0.00 46.93 1.90
1983 2169 4.823989 GCTTCCATCCAAGCATACTGTAAT 59.176 41.667 0.26 0.00 46.93 1.89
2028 2214 0.104725 GACCCTGATCCTGATCCCCT 60.105 60.000 4.76 0.00 37.02 4.79
2036 2222 3.434309 CCAATTGTTTGACCCTGATCCT 58.566 45.455 4.43 0.00 34.60 3.24
2122 2308 1.364721 TACAATCCGTGGTGCGATTG 58.635 50.000 7.95 7.95 44.77 2.67
2227 2413 1.252215 TTGATGACCCACGCCGACTA 61.252 55.000 0.00 0.00 0.00 2.59
2329 2515 3.260884 ACACATGACAAGTTCGGGATAGT 59.739 43.478 0.00 0.00 0.00 2.12
2332 2518 2.859165 ACACATGACAAGTTCGGGAT 57.141 45.000 0.00 0.00 0.00 3.85
2381 2569 7.928167 CACAGAGTAATCAACAGCCATATTCTA 59.072 37.037 0.00 0.00 0.00 2.10
2382 2570 6.765036 CACAGAGTAATCAACAGCCATATTCT 59.235 38.462 0.00 0.00 0.00 2.40
2389 2577 1.740025 GGCACAGAGTAATCAACAGCC 59.260 52.381 0.00 0.00 0.00 4.85
2390 2578 2.675348 GAGGCACAGAGTAATCAACAGC 59.325 50.000 0.00 0.00 0.00 4.40
2542 2730 8.284945 AGTGAAAATGCAGAGCTATAATTTGA 57.715 30.769 0.00 0.00 0.00 2.69
2548 2736 6.172630 TGTGAAGTGAAAATGCAGAGCTATA 58.827 36.000 0.00 0.00 0.00 1.31
2577 2765 9.264719 GAATTGTTCAAATGAAAAAGAGTCCAT 57.735 29.630 5.13 0.00 34.99 3.41
2583 2771 8.977267 ATTGGGAATTGTTCAAATGAAAAAGA 57.023 26.923 5.13 0.00 34.99 2.52
2799 2999 1.396653 CTTGGGCCATCAAGTCATCC 58.603 55.000 7.26 0.00 39.27 3.51
2859 3059 8.015087 GCCAAAAGCTAATTACAAAAATGGTTC 58.985 33.333 0.00 0.00 38.99 3.62
2862 3062 7.432350 TGCCAAAAGCTAATTACAAAAATGG 57.568 32.000 0.00 0.00 44.23 3.16
2937 3139 3.414193 CCCCCAGCAGAGCATCCA 61.414 66.667 0.00 0.00 33.66 3.41
3072 3274 9.979578 AATGTAACAAAGATAACATGAAAGCAA 57.020 25.926 0.00 0.00 33.04 3.91
3082 3284 9.556030 GAAGGCACTAAATGTAACAAAGATAAC 57.444 33.333 0.00 0.00 38.49 1.89
3088 3290 8.232913 AGAAAGAAGGCACTAAATGTAACAAA 57.767 30.769 0.00 0.00 38.49 2.83
3108 3310 0.795085 CCTCACAGCAGCGAAGAAAG 59.205 55.000 0.00 0.00 0.00 2.62
3115 3317 3.123620 GCCTTCCTCACAGCAGCG 61.124 66.667 0.00 0.00 0.00 5.18
3124 3326 2.214347 GAAATAGAAGCGGCCTTCCTC 58.786 52.381 0.00 0.00 46.97 3.71
3131 3333 1.101635 GGGGTGGAAATAGAAGCGGC 61.102 60.000 0.00 0.00 0.00 6.53
3132 3334 0.254747 TGGGGTGGAAATAGAAGCGG 59.745 55.000 0.00 0.00 0.00 5.52
3134 3336 2.808906 AGTGGGGTGGAAATAGAAGC 57.191 50.000 0.00 0.00 0.00 3.86
3147 3349 1.604604 AACATGTCGTTGAAGTGGGG 58.395 50.000 0.00 0.00 36.12 4.96
3148 3350 3.188460 CCTTAACATGTCGTTGAAGTGGG 59.812 47.826 0.00 0.00 38.63 4.61
3158 3360 9.261180 ACAGAATTATATCACCTTAACATGTCG 57.739 33.333 0.00 0.00 0.00 4.35
3189 3391 3.419915 CAGCAATATCGACACTGCAAAC 58.580 45.455 0.00 0.00 37.26 2.93
3200 3402 1.002792 TCTCGACGACCAGCAATATCG 60.003 52.381 0.00 0.00 41.60 2.92
3231 3433 5.690409 GCAATCTCACAATGCCATTGAATAG 59.310 40.000 23.56 15.68 42.83 1.73
3287 3489 9.357652 GCAAGAAAGAATTATCACAAAGCATTA 57.642 29.630 0.00 0.00 0.00 1.90
3291 3493 8.239998 AGTAGCAAGAAAGAATTATCACAAAGC 58.760 33.333 0.00 0.00 0.00 3.51
3303 3505 7.445402 ACAAAGAGCAATAGTAGCAAGAAAGAA 59.555 33.333 0.00 0.00 0.00 2.52
3313 3515 5.812642 CCACAGGTACAAAGAGCAATAGTAG 59.187 44.000 0.00 0.00 0.00 2.57
3350 3552 9.585099 GTTGGCAATTGAATCATCTAACATAAA 57.415 29.630 10.34 0.00 0.00 1.40
3355 3559 5.517770 GCTGTTGGCAATTGAATCATCTAAC 59.482 40.000 10.34 5.31 41.35 2.34
3378 3582 7.766219 AACATCAGCAAAATGAAGATATTGC 57.234 32.000 1.31 1.31 46.43 3.56
3457 3661 5.817816 GGTTTTATCCATGTGAGAGGTACAG 59.182 44.000 0.00 0.00 0.00 2.74
3468 3672 7.824779 GTCTTCTTACTGAGGTTTTATCCATGT 59.175 37.037 0.00 0.00 0.00 3.21
3542 3746 7.279758 CAGCAGTTAGAAAAACCATTTCCAAAA 59.720 33.333 0.00 0.00 0.00 2.44
3547 3751 5.532557 AGCAGCAGTTAGAAAAACCATTTC 58.467 37.500 0.00 0.00 0.00 2.17
3551 3755 3.815401 GAGAGCAGCAGTTAGAAAAACCA 59.185 43.478 0.00 0.00 0.00 3.67
3568 3772 2.744741 GGGAAAAAGCACTGTAGAGAGC 59.255 50.000 0.79 0.79 36.14 4.09
3572 3776 1.202710 TGCGGGAAAAAGCACTGTAGA 60.203 47.619 0.00 0.00 38.59 2.59
3629 3833 5.278414 CCACACATCATAAGCAGTGTTCAAA 60.278 40.000 0.00 0.00 42.79 2.69
3672 3876 8.195436 TCGTATCTCTTAAATCACAGGGTTAAG 58.805 37.037 0.00 0.00 36.56 1.85
3731 3935 8.382030 AGCTGGAAAAATACAAGAAAATTTGG 57.618 30.769 0.00 0.00 32.32 3.28
3892 4099 8.696374 CAATCTACTCTTATGTTGAGGGTTAGA 58.304 37.037 0.00 0.00 35.98 2.10
3893 4100 7.928706 CCAATCTACTCTTATGTTGAGGGTTAG 59.071 40.741 0.00 0.00 35.98 2.34
3899 4106 6.577103 TCAGCCAATCTACTCTTATGTTGAG 58.423 40.000 0.00 0.00 37.55 3.02
3969 4181 0.396811 ACCCTGAGAAACCCTTCACG 59.603 55.000 0.00 0.00 33.64 4.35
3984 4196 2.311854 CCCATTCTGCCCTGACCCT 61.312 63.158 0.00 0.00 0.00 4.34
4005 4217 8.980610 CAATGAGCAAAACATGAGTTGATAAAA 58.019 29.630 14.59 2.09 38.17 1.52
4026 4238 0.174389 GTCTCTCGCTCTGGCAATGA 59.826 55.000 0.00 0.00 38.60 2.57
4143 4357 4.679662 CATCCAATGATCTCAAAACCAGC 58.320 43.478 0.00 0.00 0.00 4.85
4183 4397 7.230108 AGGAATAAATAGTCTGGCATGTTCATG 59.770 37.037 8.26 8.26 0.00 3.07
4213 4427 3.441222 CCAGCTGACTTGTCATGCAATTA 59.559 43.478 17.39 0.00 36.36 1.40
4253 4470 2.736721 CGTCGAAAAGCATGAGAGGAAA 59.263 45.455 0.00 0.00 0.00 3.13
4288 4505 2.338620 CAGTCACCGACCGCTTCA 59.661 61.111 0.00 0.00 32.18 3.02
4363 4580 2.291209 TGAACACAAGGTGATGGCAT 57.709 45.000 0.00 0.00 36.96 4.40
4402 4619 4.080413 TGCTGGTGTCAAAGGATATGATCA 60.080 41.667 0.00 0.00 0.00 2.92
4418 4635 1.600076 AGCACTTCAGCTGCTGGTG 60.600 57.895 27.79 26.33 43.54 4.17
4467 4686 6.048563 ACCCATCTTCTATCTATACCCTCCTT 59.951 42.308 0.00 0.00 0.00 3.36
4468 4687 5.561967 ACCCATCTTCTATCTATACCCTCCT 59.438 44.000 0.00 0.00 0.00 3.69
4472 4691 4.777896 TGCACCCATCTTCTATCTATACCC 59.222 45.833 0.00 0.00 0.00 3.69
4566 4788 0.754217 ATAACGCAGAGGGCCTCGTA 60.754 55.000 27.11 15.31 40.31 3.43
4591 4813 7.359765 GCAAATGGAAAGAATCAACATGTGAAG 60.360 37.037 0.00 0.00 40.50 3.02
4601 4826 5.867330 ACAATTGGCAAATGGAAAGAATCA 58.133 33.333 18.77 0.00 0.00 2.57
4615 4840 2.351455 TCGAGCGAATAACAATTGGCA 58.649 42.857 10.83 0.00 37.66 4.92
4624 4849 9.639601 AAATATTCAGATACATCGAGCGAATAA 57.360 29.630 0.00 0.00 30.39 1.40
4732 4961 5.459982 ACATGACTAGACTAGAAGGGAGT 57.540 43.478 16.55 4.31 0.00 3.85
4741 4970 3.021695 CCCCACGAACATGACTAGACTA 58.978 50.000 0.00 0.00 0.00 2.59
4816 5045 1.614903 ACAACATGGTTGCAGTCATGG 59.385 47.619 25.07 15.70 43.49 3.66
4905 5143 4.455533 TGTCAAGGTGCACATGAAGAATAC 59.544 41.667 21.68 12.05 0.00 1.89
4981 5219 5.918608 TGTCTTCCATAGCATACTTTCTCC 58.081 41.667 0.00 0.00 0.00 3.71
4982 5220 7.041508 CCATTGTCTTCCATAGCATACTTTCTC 60.042 40.741 0.00 0.00 0.00 2.87
4983 5221 6.769822 CCATTGTCTTCCATAGCATACTTTCT 59.230 38.462 0.00 0.00 0.00 2.52
4984 5222 6.514048 GCCATTGTCTTCCATAGCATACTTTC 60.514 42.308 0.00 0.00 0.00 2.62
4988 5226 4.023707 GTGCCATTGTCTTCCATAGCATAC 60.024 45.833 0.00 0.00 0.00 2.39
4993 5231 2.684881 GTGGTGCCATTGTCTTCCATAG 59.315 50.000 0.00 0.00 0.00 2.23
5023 5261 7.180229 GGGGATATCCTCCTTTTTGAAGAAAAA 59.820 37.037 21.18 0.00 44.28 1.94
5024 5262 6.667848 GGGGATATCCTCCTTTTTGAAGAAAA 59.332 38.462 21.18 0.00 44.28 2.29
5026 5264 5.766590 GGGGATATCCTCCTTTTTGAAGAA 58.233 41.667 21.18 0.00 44.28 2.52
5027 5265 5.388599 GGGGATATCCTCCTTTTTGAAGA 57.611 43.478 21.18 0.00 44.28 2.87
5038 5276 1.990614 GAGGCCGGGGGATATCCTC 60.991 68.421 21.18 17.78 36.86 3.71
5039 5277 2.122954 GAGGCCGGGGGATATCCT 59.877 66.667 21.18 0.00 35.95 3.24
5040 5278 2.122954 AGAGGCCGGGGGATATCC 59.877 66.667 13.87 13.87 0.00 2.59
5041 5279 2.960688 GCAGAGGCCGGGGGATATC 61.961 68.421 2.18 0.00 0.00 1.63
5042 5280 2.930562 GCAGAGGCCGGGGGATAT 60.931 66.667 2.18 0.00 0.00 1.63
5043 5281 4.490606 TGCAGAGGCCGGGGGATA 62.491 66.667 2.18 0.00 40.13 2.59
5058 5296 1.402968 CTATGAGTGTGGTGCCATTGC 59.597 52.381 0.00 0.00 38.26 3.56
5059 5297 1.402968 GCTATGAGTGTGGTGCCATTG 59.597 52.381 0.00 0.00 0.00 2.82
5060 5298 1.683011 GGCTATGAGTGTGGTGCCATT 60.683 52.381 0.00 0.00 40.04 3.16
5061 5299 0.107017 GGCTATGAGTGTGGTGCCAT 60.107 55.000 0.00 0.00 40.04 4.40
5062 5300 1.200760 AGGCTATGAGTGTGGTGCCA 61.201 55.000 0.00 0.00 42.46 4.92
5063 5301 0.745845 CAGGCTATGAGTGTGGTGCC 60.746 60.000 0.00 0.00 40.54 5.01
5064 5302 0.250234 TCAGGCTATGAGTGTGGTGC 59.750 55.000 0.00 0.00 32.77 5.01
5065 5303 2.289631 TGTTCAGGCTATGAGTGTGGTG 60.290 50.000 0.00 0.00 39.68 4.17
5066 5304 1.977854 TGTTCAGGCTATGAGTGTGGT 59.022 47.619 0.00 0.00 39.68 4.16
5067 5305 2.768253 TGTTCAGGCTATGAGTGTGG 57.232 50.000 0.00 0.00 39.68 4.17
5068 5306 4.067896 ACTTTGTTCAGGCTATGAGTGTG 58.932 43.478 0.00 0.00 39.68 3.82
5069 5307 4.067896 CACTTTGTTCAGGCTATGAGTGT 58.932 43.478 0.00 0.00 39.68 3.55
5070 5308 4.067896 ACACTTTGTTCAGGCTATGAGTG 58.932 43.478 0.00 0.00 39.68 3.51
5071 5309 4.067896 CACACTTTGTTCAGGCTATGAGT 58.932 43.478 0.00 0.00 39.68 3.41
5072 5310 3.120060 GCACACTTTGTTCAGGCTATGAG 60.120 47.826 0.00 0.00 39.68 2.90
5073 5311 2.813754 GCACACTTTGTTCAGGCTATGA 59.186 45.455 0.00 0.00 35.62 2.15
5074 5312 2.553602 TGCACACTTTGTTCAGGCTATG 59.446 45.455 0.00 0.00 0.00 2.23
5075 5313 2.862541 TGCACACTTTGTTCAGGCTAT 58.137 42.857 0.00 0.00 0.00 2.97
5076 5314 2.340210 TGCACACTTTGTTCAGGCTA 57.660 45.000 0.00 0.00 0.00 3.93
5077 5315 1.473258 TTGCACACTTTGTTCAGGCT 58.527 45.000 0.00 0.00 0.00 4.58
5078 5316 2.292103 TTTGCACACTTTGTTCAGGC 57.708 45.000 0.00 0.00 0.00 4.85
5079 5317 3.798337 GTGATTTGCACACTTTGTTCAGG 59.202 43.478 0.00 0.00 46.91 3.86
5098 5336 2.880268 CAAGATGACCTTGCTGTTGTGA 59.120 45.455 0.00 0.00 44.90 3.58
5110 5348 0.548031 TCCAGGATGCCAAGATGACC 59.452 55.000 0.00 0.00 31.97 4.02
5113 5351 6.183360 ACAAAAATATCCAGGATGCCAAGATG 60.183 38.462 12.80 5.29 31.97 2.90
5114 5352 5.901276 ACAAAAATATCCAGGATGCCAAGAT 59.099 36.000 12.80 0.00 31.97 2.40
5120 5358 5.036737 CGTGAACAAAAATATCCAGGATGC 58.963 41.667 12.80 0.00 31.97 3.91
5191 5430 0.721718 GGAGTGCTTGTGTGATACGC 59.278 55.000 0.00 0.00 0.00 4.42
5192 5431 2.370281 AGGAGTGCTTGTGTGATACG 57.630 50.000 0.00 0.00 0.00 3.06
5193 5432 3.189287 CCAAAGGAGTGCTTGTGTGATAC 59.811 47.826 0.00 0.00 0.00 2.24
5194 5433 3.072330 TCCAAAGGAGTGCTTGTGTGATA 59.928 43.478 0.00 0.00 0.00 2.15
5279 5518 3.023119 AGAATGGTTTGTCACAGTGCAA 58.977 40.909 0.00 0.96 0.00 4.08
5290 5529 5.532406 TGTCTTTCCAGAGAAGAATGGTTTG 59.468 40.000 0.00 0.00 37.84 2.93
5291 5530 5.694995 TGTCTTTCCAGAGAAGAATGGTTT 58.305 37.500 0.00 0.00 37.84 3.27
5293 5532 4.982241 TGTCTTTCCAGAGAAGAATGGT 57.018 40.909 0.00 0.00 37.84 3.55
5294 5533 6.639632 TTTTGTCTTTCCAGAGAAGAATGG 57.360 37.500 0.00 0.00 33.96 3.16
5295 5534 7.811713 GGAATTTTGTCTTTCCAGAGAAGAATG 59.188 37.037 0.00 0.00 40.93 2.67
5296 5535 7.039434 GGGAATTTTGTCTTTCCAGAGAAGAAT 60.039 37.037 4.27 0.00 42.67 2.40
5297 5536 6.265422 GGGAATTTTGTCTTTCCAGAGAAGAA 59.735 38.462 4.27 0.00 42.67 2.52
5298 5537 5.770162 GGGAATTTTGTCTTTCCAGAGAAGA 59.230 40.000 4.27 0.00 42.67 2.87
5299 5538 5.536161 TGGGAATTTTGTCTTTCCAGAGAAG 59.464 40.000 4.27 0.00 42.67 2.85
5300 5539 5.454062 TGGGAATTTTGTCTTTCCAGAGAA 58.546 37.500 4.27 0.00 42.67 2.87
5301 5540 5.060427 TGGGAATTTTGTCTTTCCAGAGA 57.940 39.130 4.27 0.00 42.67 3.10
5303 5542 5.060427 TCTGGGAATTTTGTCTTTCCAGA 57.940 39.130 8.66 8.66 42.67 3.86
5304 5543 4.321527 GCTCTGGGAATTTTGTCTTTCCAG 60.322 45.833 4.29 4.29 42.67 3.86
5305 5544 3.573967 GCTCTGGGAATTTTGTCTTTCCA 59.426 43.478 4.27 0.00 42.67 3.53
5306 5545 3.829026 AGCTCTGGGAATTTTGTCTTTCC 59.171 43.478 0.00 0.00 40.60 3.13
5308 5547 4.895297 TGAAGCTCTGGGAATTTTGTCTTT 59.105 37.500 0.00 0.00 0.00 2.52
5309 5548 4.473444 TGAAGCTCTGGGAATTTTGTCTT 58.527 39.130 0.00 0.00 0.00 3.01
5310 5549 4.104383 TGAAGCTCTGGGAATTTTGTCT 57.896 40.909 0.00 0.00 0.00 3.41
5311 5550 5.184671 AGAATGAAGCTCTGGGAATTTTGTC 59.815 40.000 0.00 0.00 0.00 3.18
5312 5551 5.082425 AGAATGAAGCTCTGGGAATTTTGT 58.918 37.500 0.00 0.00 0.00 2.83
5313 5552 5.656213 AGAATGAAGCTCTGGGAATTTTG 57.344 39.130 0.00 0.00 0.00 2.44
5314 5553 6.676990 AAAGAATGAAGCTCTGGGAATTTT 57.323 33.333 0.00 0.00 0.00 1.82
5315 5554 6.461640 CAAAAGAATGAAGCTCTGGGAATTT 58.538 36.000 0.00 0.00 0.00 1.82
5316 5555 5.568223 GCAAAAGAATGAAGCTCTGGGAATT 60.568 40.000 0.00 0.00 0.00 2.17
5317 5556 4.081807 GCAAAAGAATGAAGCTCTGGGAAT 60.082 41.667 0.00 0.00 0.00 3.01
5318 5557 3.256631 GCAAAAGAATGAAGCTCTGGGAA 59.743 43.478 0.00 0.00 0.00 3.97
5319 5558 2.821969 GCAAAAGAATGAAGCTCTGGGA 59.178 45.455 0.00 0.00 0.00 4.37
5320 5559 2.094338 GGCAAAAGAATGAAGCTCTGGG 60.094 50.000 0.00 0.00 0.00 4.45
5321 5560 2.559668 TGGCAAAAGAATGAAGCTCTGG 59.440 45.455 0.00 0.00 0.00 3.86
5322 5561 3.928727 TGGCAAAAGAATGAAGCTCTG 57.071 42.857 0.00 0.00 0.00 3.35
5323 5562 4.525487 TCAATGGCAAAAGAATGAAGCTCT 59.475 37.500 0.00 0.00 0.00 4.09
5324 5563 4.813027 TCAATGGCAAAAGAATGAAGCTC 58.187 39.130 0.00 0.00 0.00 4.09
5325 5564 4.877378 TCAATGGCAAAAGAATGAAGCT 57.123 36.364 0.00 0.00 0.00 3.74
5326 5565 5.172934 TCATCAATGGCAAAAGAATGAAGC 58.827 37.500 0.00 0.00 0.00 3.86
5327 5566 7.764443 AGAATCATCAATGGCAAAAGAATGAAG 59.236 33.333 0.00 0.00 0.00 3.02
5328 5567 7.617225 AGAATCATCAATGGCAAAAGAATGAA 58.383 30.769 0.00 0.00 0.00 2.57
5329 5568 7.123697 AGAGAATCATCAATGGCAAAAGAATGA 59.876 33.333 0.00 0.00 37.82 2.57
5337 5576 5.944135 TGGATAGAGAATCATCAATGGCAA 58.056 37.500 0.00 0.00 37.82 4.52
5365 5604 9.286946 GTTCAATCATCAGAATCACAAAATCTC 57.713 33.333 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.