Multiple sequence alignment - TraesCS2B01G178000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G178000 chr2B 100.000 2856 0 0 1 2856 153128211 153125356 0.000000e+00 5275.0
1 TraesCS2B01G178000 chr2B 84.352 933 57 36 792 1670 152844965 152844068 0.000000e+00 832.0
2 TraesCS2B01G178000 chr2B 91.774 389 15 12 237 622 152845509 152845135 2.520000e-145 525.0
3 TraesCS2B01G178000 chr2B 96.774 217 3 4 2052 2266 153106690 153106476 2.710000e-95 359.0
4 TraesCS2B01G178000 chr2B 88.732 284 18 7 1678 1957 152843887 152843614 4.560000e-88 335.0
5 TraesCS2B01G178000 chr2A 87.116 1203 97 32 792 1957 100826698 100825517 0.000000e+00 1310.0
6 TraesCS2B01G178000 chr2A 98.795 498 5 1 2360 2856 727635656 727635159 0.000000e+00 885.0
7 TraesCS2B01G178000 chr2A 86.389 720 68 16 1245 1957 100971671 100970975 0.000000e+00 760.0
8 TraesCS2B01G178000 chr2A 86.697 436 26 17 200 622 100827294 100826878 3.350000e-124 455.0
9 TraesCS2B01G178000 chr2A 95.455 264 7 3 928 1187 100971921 100971659 1.580000e-112 416.0
10 TraesCS2B01G178000 chr2A 87.047 193 24 1 1 192 29159046 29159238 1.720000e-52 217.0
11 TraesCS2B01G178000 chr2A 83.889 180 13 6 364 527 100972754 100972575 1.060000e-34 158.0
12 TraesCS2B01G178000 chr3B 98.418 632 7 3 2227 2856 655633601 655632971 0.000000e+00 1109.0
13 TraesCS2B01G178000 chr3B 97.927 627 10 3 2232 2856 405938115 405938740 0.000000e+00 1083.0
14 TraesCS2B01G178000 chr3B 90.957 376 22 4 2047 2410 817567397 817567772 1.980000e-136 496.0
15 TraesCS2B01G178000 chr1B 98.080 625 12 0 2232 2856 679594764 679595388 0.000000e+00 1088.0
16 TraesCS2B01G178000 chr5B 97.966 590 12 0 2267 2856 475187371 475186782 0.000000e+00 1024.0
17 TraesCS2B01G178000 chr5B 88.889 189 20 1 5 192 495487172 495487360 6.150000e-57 231.0
18 TraesCS2B01G178000 chr4B 94.463 614 31 3 2240 2852 365824733 365825344 0.000000e+00 942.0
19 TraesCS2B01G178000 chr4B 94.258 209 9 3 2052 2259 175550992 175550786 1.650000e-82 316.0
20 TraesCS2B01G178000 chr4B 94.231 208 10 2 2052 2259 175558096 175557891 1.650000e-82 316.0
21 TraesCS2B01G178000 chr3A 99.197 498 3 1 2360 2856 667305799 667305302 0.000000e+00 896.0
22 TraesCS2B01G178000 chr4A 98.996 498 4 1 2360 2856 597064743 597065240 0.000000e+00 891.0
23 TraesCS2B01G178000 chr1A 98.793 497 6 0 2360 2856 505527980 505528476 0.000000e+00 885.0
24 TraesCS2B01G178000 chr1A 94.712 208 9 2 2052 2259 74096017 74095812 3.550000e-84 322.0
25 TraesCS2B01G178000 chr1A 94.712 208 9 2 2052 2259 74103121 74102916 3.550000e-84 322.0
26 TraesCS2B01G178000 chr1A 85.714 196 24 2 1 192 508078371 508078176 1.340000e-48 204.0
27 TraesCS2B01G178000 chr2D 89.506 648 46 13 1316 1957 101872950 101872319 0.000000e+00 800.0
28 TraesCS2B01G178000 chr2D 87.275 723 59 13 1245 1957 101956749 101956050 0.000000e+00 795.0
29 TraesCS2B01G178000 chr2D 88.365 636 48 10 1 622 101874259 101873636 0.000000e+00 741.0
30 TraesCS2B01G178000 chr2D 85.586 555 42 16 761 1283 101873495 101872947 5.380000e-152 547.0
31 TraesCS2B01G178000 chr2D 94.697 264 9 3 928 1187 101956999 101956737 3.430000e-109 405.0
32 TraesCS2B01G178000 chr2D 81.641 256 22 11 293 527 101958281 101958030 3.760000e-44 189.0
33 TraesCS2B01G178000 chr5A 94.712 208 9 2 2052 2259 669593870 669593665 3.550000e-84 322.0
34 TraesCS2B01G178000 chr5A 86.598 194 21 5 2 192 653926678 653926487 2.880000e-50 209.0
35 TraesCS2B01G178000 chr7B 93.839 211 11 2 2049 2259 517842817 517843025 1.650000e-82 316.0
36 TraesCS2B01G178000 chr7B 93.750 208 11 2 2052 2259 517849924 517850129 7.680000e-81 311.0
37 TraesCS2B01G178000 chr7B 87.500 112 14 0 1025 1136 452961720 452961831 2.310000e-26 130.0
38 TraesCS2B01G178000 chr7B 95.455 44 2 0 1409 1452 128822328 128822371 1.420000e-08 71.3
39 TraesCS2B01G178000 chr4D 87.121 264 12 6 299 547 498413833 498413577 2.170000e-71 279.0
40 TraesCS2B01G178000 chr4D 88.021 192 21 1 3 192 44986833 44986642 2.860000e-55 226.0
41 TraesCS2B01G178000 chr3D 87.113 194 22 3 1 192 390673306 390673498 1.720000e-52 217.0
42 TraesCS2B01G178000 chr7D 86.387 191 25 1 1 190 139108623 139108813 1.040000e-49 207.0
43 TraesCS2B01G178000 chr7D 87.500 112 14 0 1025 1136 436113988 436114099 2.310000e-26 130.0
44 TraesCS2B01G178000 chr7D 95.455 44 2 0 1409 1452 165634967 165635010 1.420000e-08 71.3
45 TraesCS2B01G178000 chr5D 86.243 189 25 1 5 192 412153064 412153252 1.340000e-48 204.0
46 TraesCS2B01G178000 chr7A 86.607 112 15 0 1025 1136 486237542 486237431 1.070000e-24 124.0
47 TraesCS2B01G178000 chr7A 95.455 44 2 0 1409 1452 167179936 167179979 1.420000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G178000 chr2B 153125356 153128211 2855 True 5275.000000 5275 100.000000 1 2856 1 chr2B.!!$R2 2855
1 TraesCS2B01G178000 chr2B 152843614 152845509 1895 True 564.000000 832 88.286000 237 1957 3 chr2B.!!$R3 1720
2 TraesCS2B01G178000 chr2A 100825517 100827294 1777 True 882.500000 1310 86.906500 200 1957 2 chr2A.!!$R2 1757
3 TraesCS2B01G178000 chr2A 100970975 100972754 1779 True 444.666667 760 88.577667 364 1957 3 chr2A.!!$R3 1593
4 TraesCS2B01G178000 chr3B 655632971 655633601 630 True 1109.000000 1109 98.418000 2227 2856 1 chr3B.!!$R1 629
5 TraesCS2B01G178000 chr3B 405938115 405938740 625 False 1083.000000 1083 97.927000 2232 2856 1 chr3B.!!$F1 624
6 TraesCS2B01G178000 chr1B 679594764 679595388 624 False 1088.000000 1088 98.080000 2232 2856 1 chr1B.!!$F1 624
7 TraesCS2B01G178000 chr5B 475186782 475187371 589 True 1024.000000 1024 97.966000 2267 2856 1 chr5B.!!$R1 589
8 TraesCS2B01G178000 chr4B 365824733 365825344 611 False 942.000000 942 94.463000 2240 2852 1 chr4B.!!$F1 612
9 TraesCS2B01G178000 chr2D 101872319 101874259 1940 True 696.000000 800 87.819000 1 1957 3 chr2D.!!$R1 1956
10 TraesCS2B01G178000 chr2D 101956050 101958281 2231 True 463.000000 795 87.871000 293 1957 3 chr2D.!!$R2 1664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 371 0.100146 GTGCTAGCTGCTCAATTGCC 59.9 55.0 17.23 0.0 43.37 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 3225 0.031857 TTGAACGGACGCGACCTTTA 59.968 50.0 24.38 11.91 0.0 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.785453 CAAGGTCAGGCCGGCTCC 62.785 72.222 28.56 21.94 43.70 4.70
60 61 4.351054 AGGCCGGCTCCAGTTTGG 62.351 66.667 28.56 0.00 39.43 3.28
61 62 4.344865 GGCCGGCTCCAGTTTGGA 62.345 66.667 28.56 0.00 45.98 3.53
95 96 2.483745 CGTCAGCGGCTCGTTCTA 59.516 61.111 0.00 0.00 0.00 2.10
98 99 2.951745 CAGCGGCTCGTTCTAGCG 60.952 66.667 0.00 0.00 43.74 4.26
99 100 4.194720 AGCGGCTCGTTCTAGCGG 62.195 66.667 0.00 0.00 43.74 5.52
115 116 2.126502 GGCGGCAATGGTTGTTCG 60.127 61.111 3.07 0.00 34.43 3.95
116 117 2.622011 GGCGGCAATGGTTGTTCGA 61.622 57.895 3.07 0.00 33.63 3.71
125 126 4.324402 GCAATGGTTGTTCGATTGTTCATC 59.676 41.667 0.00 0.00 41.89 2.92
194 195 9.081997 CCACTGAATCTTTATAATAGATCTCGC 57.918 37.037 0.00 0.00 31.28 5.03
205 215 2.997485 AGATCTCGCAAACCAAAAGC 57.003 45.000 0.00 0.00 0.00 3.51
211 221 1.439644 GCAAACCAAAAGCGACCCA 59.560 52.632 0.00 0.00 0.00 4.51
215 225 1.161843 AACCAAAAGCGACCCATACG 58.838 50.000 0.00 0.00 0.00 3.06
226 237 3.325870 CGACCCATACGCATATTGACAT 58.674 45.455 0.00 0.00 0.00 3.06
249 260 2.747396 TTGAATGGGCTACGTACGTT 57.253 45.000 27.92 6.17 0.00 3.99
297 308 5.528690 TGGAGAATAGTTGCATTACATGAGC 59.471 40.000 0.00 0.00 0.00 4.26
344 371 0.100146 GTGCTAGCTGCTCAATTGCC 59.900 55.000 17.23 0.00 43.37 4.52
440 473 2.764314 CGGCTAGGGTGCATGCAAC 61.764 63.158 27.92 27.92 34.04 4.17
558 608 0.178903 AGAGTCAACCAGCCCTACCA 60.179 55.000 0.00 0.00 0.00 3.25
559 609 0.250513 GAGTCAACCAGCCCTACCAG 59.749 60.000 0.00 0.00 0.00 4.00
560 610 1.377333 GTCAACCAGCCCTACCAGC 60.377 63.158 0.00 0.00 0.00 4.85
561 611 1.845664 TCAACCAGCCCTACCAGCA 60.846 57.895 0.00 0.00 0.00 4.41
608 658 7.124901 AGACCTAATCTCTTTGTCTAATCAGCA 59.875 37.037 0.00 0.00 34.68 4.41
609 659 7.271511 ACCTAATCTCTTTGTCTAATCAGCAG 58.728 38.462 0.00 0.00 0.00 4.24
611 661 3.515630 TCTCTTTGTCTAATCAGCAGCG 58.484 45.455 0.00 0.00 0.00 5.18
612 662 2.002586 TCTTTGTCTAATCAGCAGCGC 58.997 47.619 0.00 0.00 0.00 5.92
613 663 1.733912 CTTTGTCTAATCAGCAGCGCA 59.266 47.619 11.47 0.00 0.00 6.09
614 664 1.078709 TTGTCTAATCAGCAGCGCAC 58.921 50.000 11.47 0.00 0.00 5.34
635 1346 2.872245 CACACACGGGCCATAGATTTAG 59.128 50.000 4.39 0.00 0.00 1.85
636 1347 1.873591 CACACGGGCCATAGATTTAGC 59.126 52.381 4.39 0.00 0.00 3.09
638 1349 2.146342 CACGGGCCATAGATTTAGCAG 58.854 52.381 4.39 0.00 0.00 4.24
639 1350 1.768870 ACGGGCCATAGATTTAGCAGT 59.231 47.619 4.39 0.00 0.00 4.40
640 1351 2.969950 ACGGGCCATAGATTTAGCAGTA 59.030 45.455 4.39 0.00 0.00 2.74
641 1352 3.244112 ACGGGCCATAGATTTAGCAGTAC 60.244 47.826 4.39 0.00 0.00 2.73
642 1353 3.326747 GGGCCATAGATTTAGCAGTACG 58.673 50.000 4.39 0.00 0.00 3.67
643 1354 3.244112 GGGCCATAGATTTAGCAGTACGT 60.244 47.826 4.39 0.00 0.00 3.57
644 1355 4.021719 GGGCCATAGATTTAGCAGTACGTA 60.022 45.833 4.39 0.00 0.00 3.57
645 1356 4.922103 GGCCATAGATTTAGCAGTACGTAC 59.078 45.833 18.10 18.10 0.00 3.67
646 1357 4.615961 GCCATAGATTTAGCAGTACGTACG 59.384 45.833 19.49 15.01 0.00 3.67
647 1358 5.755813 CCATAGATTTAGCAGTACGTACGT 58.244 41.667 25.98 25.98 0.00 3.57
648 1359 6.566564 GCCATAGATTTAGCAGTACGTACGTA 60.567 42.308 23.60 23.60 0.00 3.57
657 1368 1.548986 GTACGTACGTACCACATGGC 58.451 55.000 36.94 17.39 43.60 4.40
658 1369 1.135431 GTACGTACGTACCACATGGCA 60.135 52.381 36.94 11.26 43.60 4.92
659 1370 0.533491 ACGTACGTACCACATGGCAT 59.467 50.000 21.41 0.00 39.32 4.40
660 1371 0.927537 CGTACGTACCACATGGCATG 59.072 55.000 25.31 25.31 39.32 4.06
661 1372 1.470112 CGTACGTACCACATGGCATGA 60.470 52.381 32.74 8.56 39.32 3.07
672 1383 1.332686 CATGGCATGATTCACGACCAG 59.667 52.381 22.91 0.00 0.00 4.00
674 1385 1.026182 GGCATGATTCACGACCAGCA 61.026 55.000 0.00 0.00 0.00 4.41
675 1386 0.376152 GCATGATTCACGACCAGCAG 59.624 55.000 0.00 0.00 0.00 4.24
676 1387 0.376152 CATGATTCACGACCAGCAGC 59.624 55.000 0.00 0.00 0.00 5.25
677 1388 0.745845 ATGATTCACGACCAGCAGCC 60.746 55.000 0.00 0.00 0.00 4.85
678 1389 1.078848 GATTCACGACCAGCAGCCT 60.079 57.895 0.00 0.00 0.00 4.58
689 1404 2.124983 GCAGCCTTGCTCGGATGA 60.125 61.111 13.13 0.00 46.95 2.92
712 1427 5.538067 GCAAAAGGCAGACTTACTAGAAG 57.462 43.478 0.00 0.00 43.97 2.85
713 1428 4.142795 GCAAAAGGCAGACTTACTAGAAGC 60.143 45.833 0.00 0.00 43.97 3.86
714 1429 3.512033 AAGGCAGACTTACTAGAAGCG 57.488 47.619 0.00 0.00 37.74 4.68
715 1430 2.724454 AGGCAGACTTACTAGAAGCGA 58.276 47.619 0.00 0.00 0.00 4.93
716 1431 3.292460 AGGCAGACTTACTAGAAGCGAT 58.708 45.455 0.00 0.00 0.00 4.58
717 1432 3.316868 AGGCAGACTTACTAGAAGCGATC 59.683 47.826 0.00 0.00 0.00 3.69
718 1433 3.551250 GGCAGACTTACTAGAAGCGATCC 60.551 52.174 0.00 0.00 0.00 3.36
719 1434 3.066900 GCAGACTTACTAGAAGCGATCCA 59.933 47.826 0.00 0.00 0.00 3.41
720 1435 4.261825 GCAGACTTACTAGAAGCGATCCAT 60.262 45.833 0.00 0.00 0.00 3.41
732 1447 3.462021 AGCGATCCATAGCTGAAAAGAC 58.538 45.455 0.00 0.00 42.82 3.01
745 1504 4.556898 GCTGAAAAGACGAGAGAGTACACA 60.557 45.833 0.00 0.00 0.00 3.72
746 1505 5.704888 CTGAAAAGACGAGAGAGTACACAT 58.295 41.667 0.00 0.00 0.00 3.21
747 1506 5.700846 TGAAAAGACGAGAGAGTACACATC 58.299 41.667 0.00 0.00 0.00 3.06
757 1523 5.561679 AGAGAGTACACATCACTGACACTA 58.438 41.667 0.00 0.00 0.00 2.74
776 1562 3.933955 ACTAGCTGTGTGTACTCTCTACG 59.066 47.826 0.00 0.00 0.00 3.51
778 1564 2.743126 AGCTGTGTGTACTCTCTACGAC 59.257 50.000 0.00 0.00 0.00 4.34
789 1583 3.133362 ACTCTCTACGACTAGCTAGCAGT 59.867 47.826 20.91 20.81 0.00 4.40
814 1613 1.214589 CGCTACGTTGGCACCTACT 59.785 57.895 12.40 0.00 0.00 2.57
815 1614 0.801067 CGCTACGTTGGCACCTACTC 60.801 60.000 12.40 0.00 0.00 2.59
823 1622 0.324738 TGGCACCTACTCCTGAGAGG 60.325 60.000 0.22 6.20 45.11 3.69
830 1629 0.547075 TACTCCTGAGAGGGACCTCG 59.453 60.000 12.42 0.46 46.90 4.63
882 1685 2.041115 GCCTCGCTTTGTCTTCCCC 61.041 63.158 0.00 0.00 0.00 4.81
924 1761 0.674581 CTTCCTCTGTCATTGCCGCA 60.675 55.000 0.00 0.00 0.00 5.69
985 1845 0.389025 TTGAGCTTGAGTCTGCGTCA 59.611 50.000 0.00 0.40 0.00 4.35
993 1867 1.889170 TGAGTCTGCGTCATCTCAGTT 59.111 47.619 0.00 0.00 33.77 3.16
1009 1883 2.031919 TTGGCGGCATGTCGAAGT 59.968 55.556 26.38 0.00 0.00 3.01
1017 1891 3.000819 ATGTCGAAGTGGCCGGGA 61.001 61.111 2.18 0.00 0.00 5.14
1186 2060 1.681793 CACTACGGCCACACTAGCTAT 59.318 52.381 2.24 0.00 0.00 2.97
1188 2062 1.269998 CTACGGCCACACTAGCTATCC 59.730 57.143 2.24 0.00 0.00 2.59
1266 2144 8.668510 AGTGCCACTATAACATTTTCTATCTG 57.331 34.615 0.00 0.00 0.00 2.90
1299 2177 5.537188 TGGTTTCCTTTTATGTGATGCAAC 58.463 37.500 0.00 0.00 0.00 4.17
1355 2255 7.870445 TGGTTAACAGTTTTTATCTGCCAATTC 59.130 33.333 8.10 0.00 36.50 2.17
1363 2263 5.499139 TTTATCTGCCAATTCGATGGAAC 57.501 39.130 9.29 0.00 43.54 3.62
1377 2277 5.920903 TCGATGGAACTAATCGGGTTTTAT 58.079 37.500 6.03 0.00 45.43 1.40
1381 2281 8.780249 CGATGGAACTAATCGGGTTTTATTTAT 58.220 33.333 0.00 0.00 42.47 1.40
1454 2354 1.822990 GGTGGATGAACTACCTGACGA 59.177 52.381 0.00 0.00 45.05 4.20
1493 2396 2.043450 CGCAGGAGGAGGAGGACT 60.043 66.667 0.00 0.00 0.00 3.85
1549 2452 4.854784 TCTCAGATCGCCGCGCAC 62.855 66.667 8.75 4.40 0.00 5.34
1591 2494 4.982241 TGAGGTCAAGAACTTCTGGAAT 57.018 40.909 0.00 0.00 35.11 3.01
1641 2544 4.386951 CATCGACCCGGCCACACA 62.387 66.667 2.24 0.00 0.00 3.72
1642 2545 4.388499 ATCGACCCGGCCACACAC 62.388 66.667 2.24 0.00 0.00 3.82
1645 2548 4.612412 GACCCGGCCACACACGAA 62.612 66.667 2.24 0.00 0.00 3.85
1654 2557 1.095228 CCACACACGAACACAAGCCT 61.095 55.000 0.00 0.00 0.00 4.58
1659 2562 0.318699 CACGAACACAAGCCTCTCGA 60.319 55.000 0.00 0.00 33.81 4.04
1720 2798 3.876300 GCCGTGTTCAGCGAGAAT 58.124 55.556 0.00 0.00 38.76 2.40
1795 2873 1.085091 CGGAGAGCTACGTGTACAGT 58.915 55.000 0.00 0.00 30.94 3.55
1797 2875 1.062294 GGAGAGCTACGTGTACAGTCG 59.938 57.143 0.00 0.00 0.00 4.18
1807 2885 3.702048 TACAGTCGGGGGCAGCAC 61.702 66.667 0.00 0.00 0.00 4.40
1957 3038 1.812507 GTGGTGTTATCCCGTCGGC 60.813 63.158 5.50 0.00 0.00 5.54
1958 3039 2.284276 TGGTGTTATCCCGTCGGCA 61.284 57.895 5.50 0.00 0.00 5.69
1959 3040 1.520787 GGTGTTATCCCGTCGGCAG 60.521 63.158 5.50 0.00 0.00 4.85
1960 3041 1.217244 GTGTTATCCCGTCGGCAGT 59.783 57.895 5.50 0.00 0.00 4.40
1961 3042 1.082117 GTGTTATCCCGTCGGCAGTG 61.082 60.000 5.50 0.00 0.00 3.66
1962 3043 1.520787 GTTATCCCGTCGGCAGTGG 60.521 63.158 5.50 0.00 0.00 4.00
1963 3044 3.379865 TTATCCCGTCGGCAGTGGC 62.380 63.158 5.50 6.62 40.13 5.01
1991 3072 6.872628 CTTGAGCATAAGCATAATCCAAGA 57.127 37.500 0.00 0.00 45.49 3.02
1992 3073 6.872628 TTGAGCATAAGCATAATCCAAGAG 57.127 37.500 0.00 0.00 45.49 2.85
1993 3074 5.311265 TGAGCATAAGCATAATCCAAGAGG 58.689 41.667 0.00 0.00 45.49 3.69
1994 3075 4.660168 AGCATAAGCATAATCCAAGAGGG 58.340 43.478 0.00 0.00 45.49 4.30
1995 3076 3.760684 GCATAAGCATAATCCAAGAGGGG 59.239 47.826 0.00 0.00 41.58 4.79
1996 3077 4.507335 GCATAAGCATAATCCAAGAGGGGA 60.507 45.833 0.00 0.00 40.29 4.81
1997 3078 3.584733 AAGCATAATCCAAGAGGGGAC 57.415 47.619 0.00 0.00 40.44 4.46
2011 3092 2.976099 GGGACCATTGGTTGAAGGG 58.024 57.895 10.29 0.00 41.61 3.95
2012 3093 0.614697 GGGACCATTGGTTGAAGGGG 60.615 60.000 10.29 0.00 40.04 4.79
2013 3094 0.407918 GGACCATTGGTTGAAGGGGA 59.592 55.000 10.29 0.00 40.04 4.81
2014 3095 1.616994 GGACCATTGGTTGAAGGGGAG 60.617 57.143 10.29 0.00 40.04 4.30
2015 3096 0.251787 ACCATTGGTTGAAGGGGAGC 60.252 55.000 1.37 0.00 40.04 4.70
2016 3097 0.251742 CCATTGGTTGAAGGGGAGCA 60.252 55.000 0.00 0.00 31.34 4.26
2017 3098 1.631405 CATTGGTTGAAGGGGAGCAA 58.369 50.000 0.00 0.00 37.62 3.91
2018 3099 1.969923 CATTGGTTGAAGGGGAGCAAA 59.030 47.619 0.00 0.00 36.91 3.68
2019 3100 2.397044 TTGGTTGAAGGGGAGCAAAT 57.603 45.000 0.00 0.00 31.10 2.32
2020 3101 2.397044 TGGTTGAAGGGGAGCAAATT 57.603 45.000 0.00 0.00 0.00 1.82
2021 3102 3.534357 TGGTTGAAGGGGAGCAAATTA 57.466 42.857 0.00 0.00 0.00 1.40
2022 3103 3.850752 TGGTTGAAGGGGAGCAAATTAA 58.149 40.909 0.00 0.00 0.00 1.40
2023 3104 4.424842 TGGTTGAAGGGGAGCAAATTAAT 58.575 39.130 0.00 0.00 0.00 1.40
2024 3105 4.222588 TGGTTGAAGGGGAGCAAATTAATG 59.777 41.667 0.00 0.00 0.00 1.90
2025 3106 4.383010 GGTTGAAGGGGAGCAAATTAATGG 60.383 45.833 0.00 0.00 0.00 3.16
2026 3107 3.373830 TGAAGGGGAGCAAATTAATGGG 58.626 45.455 0.00 0.00 0.00 4.00
2027 3108 3.012274 TGAAGGGGAGCAAATTAATGGGA 59.988 43.478 0.00 0.00 0.00 4.37
2028 3109 3.319031 AGGGGAGCAAATTAATGGGAG 57.681 47.619 0.00 0.00 0.00 4.30
2029 3110 2.091111 AGGGGAGCAAATTAATGGGAGG 60.091 50.000 0.00 0.00 0.00 4.30
2030 3111 2.091333 GGGGAGCAAATTAATGGGAGGA 60.091 50.000 0.00 0.00 0.00 3.71
2031 3112 3.629796 GGGGAGCAAATTAATGGGAGGAA 60.630 47.826 0.00 0.00 0.00 3.36
2032 3113 3.638627 GGGAGCAAATTAATGGGAGGAAG 59.361 47.826 0.00 0.00 0.00 3.46
2033 3114 3.638627 GGAGCAAATTAATGGGAGGAAGG 59.361 47.826 0.00 0.00 0.00 3.46
2034 3115 3.638627 GAGCAAATTAATGGGAGGAAGGG 59.361 47.826 0.00 0.00 0.00 3.95
2035 3116 2.700371 GCAAATTAATGGGAGGAAGGGG 59.300 50.000 0.00 0.00 0.00 4.79
2036 3117 2.700371 CAAATTAATGGGAGGAAGGGGC 59.300 50.000 0.00 0.00 0.00 5.80
2037 3118 1.927051 ATTAATGGGAGGAAGGGGCT 58.073 50.000 0.00 0.00 0.00 5.19
2038 3119 2.598288 TTAATGGGAGGAAGGGGCTA 57.402 50.000 0.00 0.00 0.00 3.93
2039 3120 2.598288 TAATGGGAGGAAGGGGCTAA 57.402 50.000 0.00 0.00 0.00 3.09
2040 3121 1.927051 AATGGGAGGAAGGGGCTAAT 58.073 50.000 0.00 0.00 0.00 1.73
2041 3122 1.450360 ATGGGAGGAAGGGGCTAATC 58.550 55.000 0.00 0.00 0.00 1.75
2042 3123 0.346932 TGGGAGGAAGGGGCTAATCT 59.653 55.000 0.00 0.00 0.00 2.40
2043 3124 1.275002 TGGGAGGAAGGGGCTAATCTT 60.275 52.381 0.00 0.00 0.00 2.40
2044 3125 1.853622 GGGAGGAAGGGGCTAATCTTT 59.146 52.381 0.00 0.00 0.00 2.52
2045 3126 3.053826 GGGAGGAAGGGGCTAATCTTTA 58.946 50.000 0.00 0.00 0.00 1.85
2046 3127 3.073209 GGGAGGAAGGGGCTAATCTTTAG 59.927 52.174 0.00 0.00 0.00 1.85
2047 3128 3.717392 GGAGGAAGGGGCTAATCTTTAGT 59.283 47.826 0.00 0.00 0.00 2.24
2048 3129 4.166337 GGAGGAAGGGGCTAATCTTTAGTT 59.834 45.833 0.00 0.00 0.00 2.24
2049 3130 5.340110 GGAGGAAGGGGCTAATCTTTAGTTT 60.340 44.000 0.00 0.00 0.00 2.66
2050 3131 6.126565 GGAGGAAGGGGCTAATCTTTAGTTTA 60.127 42.308 0.00 0.00 0.00 2.01
2051 3132 7.421499 GGAGGAAGGGGCTAATCTTTAGTTTAT 60.421 40.741 0.00 0.00 0.00 1.40
2052 3133 7.290813 AGGAAGGGGCTAATCTTTAGTTTATG 58.709 38.462 0.00 0.00 0.00 1.90
2053 3134 7.061054 GGAAGGGGCTAATCTTTAGTTTATGT 58.939 38.462 0.00 0.00 0.00 2.29
2054 3135 7.560262 GGAAGGGGCTAATCTTTAGTTTATGTT 59.440 37.037 0.00 0.00 0.00 2.71
2055 3136 9.623000 GAAGGGGCTAATCTTTAGTTTATGTTA 57.377 33.333 0.00 0.00 0.00 2.41
2056 3137 9.984590 AAGGGGCTAATCTTTAGTTTATGTTAA 57.015 29.630 0.00 0.00 0.00 2.01
2057 3138 9.628500 AGGGGCTAATCTTTAGTTTATGTTAAG 57.372 33.333 0.00 0.00 0.00 1.85
2058 3139 8.847196 GGGGCTAATCTTTAGTTTATGTTAAGG 58.153 37.037 0.00 0.00 0.00 2.69
2059 3140 9.623000 GGGCTAATCTTTAGTTTATGTTAAGGA 57.377 33.333 0.00 0.00 0.00 3.36
2094 3175 7.817418 TCCTAATAATCCATGCTTAACAACC 57.183 36.000 0.00 0.00 0.00 3.77
2095 3176 6.485313 TCCTAATAATCCATGCTTAACAACCG 59.515 38.462 0.00 0.00 0.00 4.44
2096 3177 2.939460 AATCCATGCTTAACAACCGC 57.061 45.000 0.00 0.00 0.00 5.68
2097 3178 1.102978 ATCCATGCTTAACAACCGCC 58.897 50.000 0.00 0.00 0.00 6.13
2098 3179 0.037590 TCCATGCTTAACAACCGCCT 59.962 50.000 0.00 0.00 0.00 5.52
2099 3180 0.887933 CCATGCTTAACAACCGCCTT 59.112 50.000 0.00 0.00 0.00 4.35
2100 3181 2.088423 CCATGCTTAACAACCGCCTTA 58.912 47.619 0.00 0.00 0.00 2.69
2101 3182 2.097466 CCATGCTTAACAACCGCCTTAG 59.903 50.000 0.00 0.00 0.00 2.18
2102 3183 1.816074 TGCTTAACAACCGCCTTAGG 58.184 50.000 0.00 0.00 37.30 2.69
2104 3185 2.302445 TGCTTAACAACCGCCTTAGGTA 59.698 45.455 0.00 0.00 45.21 3.08
2105 3186 3.244491 TGCTTAACAACCGCCTTAGGTAA 60.244 43.478 0.00 0.00 45.21 2.85
2106 3187 3.373130 GCTTAACAACCGCCTTAGGTAAG 59.627 47.826 0.00 0.00 45.21 2.34
2107 3188 4.572909 CTTAACAACCGCCTTAGGTAAGT 58.427 43.478 0.00 0.00 45.21 2.24
2108 3189 5.723295 CTTAACAACCGCCTTAGGTAAGTA 58.277 41.667 0.00 0.00 45.21 2.24
2109 3190 3.881937 ACAACCGCCTTAGGTAAGTAG 57.118 47.619 0.00 0.00 45.21 2.57
2110 3191 2.093816 ACAACCGCCTTAGGTAAGTAGC 60.094 50.000 0.00 0.00 45.21 3.58
2111 3192 1.117994 ACCGCCTTAGGTAAGTAGCC 58.882 55.000 0.00 0.00 43.89 3.93
2112 3193 0.031721 CCGCCTTAGGTAAGTAGCCG 59.968 60.000 0.00 0.00 0.00 5.52
2113 3194 0.743097 CGCCTTAGGTAAGTAGCCGT 59.257 55.000 0.00 0.00 0.00 5.68
2114 3195 1.268948 CGCCTTAGGTAAGTAGCCGTC 60.269 57.143 0.00 0.00 0.00 4.79
2115 3196 1.753073 GCCTTAGGTAAGTAGCCGTCA 59.247 52.381 0.00 0.00 0.00 4.35
2116 3197 2.364647 GCCTTAGGTAAGTAGCCGTCAT 59.635 50.000 0.00 0.00 0.00 3.06
2117 3198 3.181468 GCCTTAGGTAAGTAGCCGTCATT 60.181 47.826 0.00 0.00 0.00 2.57
2118 3199 4.369182 CCTTAGGTAAGTAGCCGTCATTG 58.631 47.826 0.00 0.00 0.00 2.82
2119 3200 2.981859 AGGTAAGTAGCCGTCATTGG 57.018 50.000 0.00 0.00 0.00 3.16
2120 3201 2.185387 AGGTAAGTAGCCGTCATTGGT 58.815 47.619 0.00 0.00 0.00 3.67
2121 3202 2.570302 AGGTAAGTAGCCGTCATTGGTT 59.430 45.455 0.00 0.00 0.00 3.67
2122 3203 3.770933 AGGTAAGTAGCCGTCATTGGTTA 59.229 43.478 0.00 0.00 0.00 2.85
2123 3204 3.867493 GGTAAGTAGCCGTCATTGGTTAC 59.133 47.826 0.00 0.00 43.69 2.50
2124 3205 2.685850 AGTAGCCGTCATTGGTTACC 57.314 50.000 0.00 0.00 44.23 2.85
2125 3206 1.134907 AGTAGCCGTCATTGGTTACCG 60.135 52.381 0.00 0.00 44.23 4.02
2126 3207 0.460635 TAGCCGTCATTGGTTACCGC 60.461 55.000 0.00 0.00 0.00 5.68
2127 3208 2.757056 GCCGTCATTGGTTACCGCC 61.757 63.158 0.00 0.00 0.00 6.13
2128 3209 1.078708 CCGTCATTGGTTACCGCCT 60.079 57.895 0.00 0.00 0.00 5.52
2129 3210 0.675522 CCGTCATTGGTTACCGCCTT 60.676 55.000 0.00 0.00 0.00 4.35
2130 3211 1.161843 CGTCATTGGTTACCGCCTTT 58.838 50.000 0.00 0.00 0.00 3.11
2131 3212 2.348660 CGTCATTGGTTACCGCCTTTA 58.651 47.619 0.00 0.00 0.00 1.85
2132 3213 2.940410 CGTCATTGGTTACCGCCTTTAT 59.060 45.455 0.00 0.00 0.00 1.40
2133 3214 3.242608 CGTCATTGGTTACCGCCTTTATG 60.243 47.826 0.00 0.00 0.00 1.90
2134 3215 3.066203 GTCATTGGTTACCGCCTTTATGG 59.934 47.826 0.00 0.00 39.35 2.74
2135 3216 2.883122 TTGGTTACCGCCTTTATGGT 57.117 45.000 0.00 0.00 42.34 3.55
2136 3217 2.116827 TGGTTACCGCCTTTATGGTG 57.883 50.000 0.00 0.00 45.60 4.17
2137 3218 1.351683 TGGTTACCGCCTTTATGGTGT 59.648 47.619 0.00 0.00 44.58 4.16
2138 3219 2.011947 GGTTACCGCCTTTATGGTGTC 58.988 52.381 0.00 0.00 44.58 3.67
2139 3220 2.011947 GTTACCGCCTTTATGGTGTCC 58.988 52.381 0.00 0.00 44.58 4.02
2140 3221 1.575419 TACCGCCTTTATGGTGTCCT 58.425 50.000 0.00 0.00 44.58 3.85
2141 3222 0.696501 ACCGCCTTTATGGTGTCCTT 59.303 50.000 0.00 0.00 44.58 3.36
2142 3223 1.074889 ACCGCCTTTATGGTGTCCTTT 59.925 47.619 0.00 0.00 44.58 3.11
2143 3224 1.472480 CCGCCTTTATGGTGTCCTTTG 59.528 52.381 0.00 0.00 44.58 2.77
2144 3225 2.159382 CGCCTTTATGGTGTCCTTTGT 58.841 47.619 0.00 0.00 41.27 2.83
2145 3226 3.340034 CGCCTTTATGGTGTCCTTTGTA 58.660 45.455 0.00 0.00 41.27 2.41
2146 3227 3.754323 CGCCTTTATGGTGTCCTTTGTAA 59.246 43.478 0.00 0.00 41.27 2.41
2147 3228 4.216687 CGCCTTTATGGTGTCCTTTGTAAA 59.783 41.667 0.00 0.00 41.27 2.01
2148 3229 5.619086 CGCCTTTATGGTGTCCTTTGTAAAG 60.619 44.000 0.00 0.00 41.27 1.85
2149 3230 5.336451 GCCTTTATGGTGTCCTTTGTAAAGG 60.336 44.000 15.65 15.65 46.28 3.11
2150 3231 7.696983 GCCTTTATGGTGTCCTTTGTAAAGGT 61.697 42.308 19.77 5.50 44.90 3.50
2151 3232 9.390582 GCCTTTATGGTGTCCTTTGTAAAGGTC 62.391 44.444 19.77 15.76 44.90 3.85
2158 3239 0.437295 CTTTGTAAAGGTCGCGTCCG 59.563 55.000 16.59 0.00 32.40 4.79
2159 3240 0.249405 TTTGTAAAGGTCGCGTCCGT 60.249 50.000 16.59 11.02 35.54 4.69
2160 3241 0.249405 TTGTAAAGGTCGCGTCCGTT 60.249 50.000 23.90 23.90 35.54 4.44
2161 3242 0.664166 TGTAAAGGTCGCGTCCGTTC 60.664 55.000 24.09 16.49 35.54 3.95
2162 3243 0.664166 GTAAAGGTCGCGTCCGTTCA 60.664 55.000 24.09 10.40 35.54 3.18
2163 3244 0.031857 TAAAGGTCGCGTCCGTTCAA 59.968 50.000 24.09 7.97 35.54 2.69
2164 3245 1.493134 AAAGGTCGCGTCCGTTCAAC 61.493 55.000 16.60 0.00 35.54 3.18
2165 3246 3.759828 GGTCGCGTCCGTTCAACG 61.760 66.667 6.64 1.89 42.87 4.10
2170 3251 3.759828 CGTCCGTTCAACGCGTCC 61.760 66.667 14.44 0.00 40.91 4.79
2171 3252 3.408851 GTCCGTTCAACGCGTCCC 61.409 66.667 14.44 0.00 40.91 4.46
2172 3253 4.668118 TCCGTTCAACGCGTCCCC 62.668 66.667 14.44 0.00 40.91 4.81
2173 3254 4.675029 CCGTTCAACGCGTCCCCT 62.675 66.667 14.44 0.00 40.91 4.79
2174 3255 3.110178 CGTTCAACGCGTCCCCTC 61.110 66.667 14.44 1.57 33.65 4.30
2175 3256 2.029964 GTTCAACGCGTCCCCTCA 59.970 61.111 14.44 0.00 0.00 3.86
2176 3257 2.029964 TTCAACGCGTCCCCTCAC 59.970 61.111 14.44 0.00 0.00 3.51
2177 3258 2.504274 TTCAACGCGTCCCCTCACT 61.504 57.895 14.44 0.00 0.00 3.41
2178 3259 2.030562 CAACGCGTCCCCTCACTT 59.969 61.111 14.44 0.00 0.00 3.16
2179 3260 1.597027 CAACGCGTCCCCTCACTTT 60.597 57.895 14.44 0.00 0.00 2.66
2180 3261 1.597027 AACGCGTCCCCTCACTTTG 60.597 57.895 14.44 0.00 0.00 2.77
2181 3262 2.030562 CGCGTCCCCTCACTTTGT 59.969 61.111 0.00 0.00 0.00 2.83
2182 3263 1.290955 CGCGTCCCCTCACTTTGTA 59.709 57.895 0.00 0.00 0.00 2.41
2183 3264 0.108329 CGCGTCCCCTCACTTTGTAT 60.108 55.000 0.00 0.00 0.00 2.29
2184 3265 1.135527 CGCGTCCCCTCACTTTGTATA 59.864 52.381 0.00 0.00 0.00 1.47
2185 3266 2.223971 CGCGTCCCCTCACTTTGTATAT 60.224 50.000 0.00 0.00 0.00 0.86
2186 3267 3.005050 CGCGTCCCCTCACTTTGTATATA 59.995 47.826 0.00 0.00 0.00 0.86
2187 3268 4.321750 CGCGTCCCCTCACTTTGTATATAT 60.322 45.833 0.00 0.00 0.00 0.86
2188 3269 5.106038 CGCGTCCCCTCACTTTGTATATATA 60.106 44.000 0.00 0.00 0.00 0.86
2189 3270 6.331061 GCGTCCCCTCACTTTGTATATATAG 58.669 44.000 0.00 0.00 0.00 1.31
2190 3271 6.331061 CGTCCCCTCACTTTGTATATATAGC 58.669 44.000 0.00 0.00 0.00 2.97
2191 3272 6.627508 CGTCCCCTCACTTTGTATATATAGCC 60.628 46.154 0.00 0.00 0.00 3.93
2192 3273 6.440965 GTCCCCTCACTTTGTATATATAGCCT 59.559 42.308 0.00 0.00 0.00 4.58
2193 3274 7.023120 TCCCCTCACTTTGTATATATAGCCTT 58.977 38.462 0.00 0.00 0.00 4.35
2194 3275 7.038302 TCCCCTCACTTTGTATATATAGCCTTG 60.038 40.741 0.00 0.00 0.00 3.61
2195 3276 7.256691 CCCCTCACTTTGTATATATAGCCTTGT 60.257 40.741 0.00 0.00 0.00 3.16
2196 3277 8.157476 CCCTCACTTTGTATATATAGCCTTGTT 58.843 37.037 0.00 0.00 0.00 2.83
2197 3278 9.561069 CCTCACTTTGTATATATAGCCTTGTTT 57.439 33.333 0.00 0.00 0.00 2.83
2199 3280 9.899661 TCACTTTGTATATATAGCCTTGTTTGT 57.100 29.630 0.00 0.00 0.00 2.83
2201 3282 9.899661 ACTTTGTATATATAGCCTTGTTTGTCA 57.100 29.630 0.00 0.00 0.00 3.58
2211 3292 6.655078 AGCCTTGTTTGTCATCAATAAAGT 57.345 33.333 0.00 0.00 33.32 2.66
2212 3293 6.449698 AGCCTTGTTTGTCATCAATAAAGTG 58.550 36.000 0.00 0.00 33.32 3.16
2213 3294 6.265196 AGCCTTGTTTGTCATCAATAAAGTGA 59.735 34.615 0.00 0.00 33.32 3.41
2214 3295 7.039504 AGCCTTGTTTGTCATCAATAAAGTGAT 60.040 33.333 0.00 0.00 38.84 3.06
2215 3296 8.243426 GCCTTGTTTGTCATCAATAAAGTGATA 58.757 33.333 0.00 0.00 36.04 2.15
2216 3297 9.559958 CCTTGTTTGTCATCAATAAAGTGATAC 57.440 33.333 0.00 0.00 36.04 2.24
2219 3300 9.283768 TGTTTGTCATCAATAAAGTGATACTGT 57.716 29.630 0.00 0.00 36.04 3.55
2249 3330 4.082787 CCATTATTCGCTCCTCTCTCTCTC 60.083 50.000 0.00 0.00 0.00 3.20
2300 3382 0.465705 TCCAGAGAGCAATTAGGCCG 59.534 55.000 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.389817 CGATGACAGCCGGAAAGTCA 60.390 55.000 21.13 21.13 45.26 3.41
53 54 2.244436 CTGTCGCCGCATCCAAACTG 62.244 60.000 0.00 0.00 0.00 3.16
82 83 4.194720 CCGCTAGAACGAGCCGCT 62.195 66.667 0.00 0.00 39.43 5.52
90 91 2.709475 CATTGCCGCCGCTAGAAC 59.291 61.111 0.00 0.00 35.36 3.01
98 99 1.933115 ATCGAACAACCATTGCCGCC 61.933 55.000 0.00 0.00 32.48 6.13
99 100 0.109319 AATCGAACAACCATTGCCGC 60.109 50.000 0.00 0.00 32.48 6.53
115 116 6.662414 TTACATCAAGGTCGATGAACAATC 57.338 37.500 7.86 0.00 44.67 2.67
116 117 7.630242 AATTACATCAAGGTCGATGAACAAT 57.370 32.000 7.86 2.38 44.67 2.71
153 154 2.158726 TCAGTGGAGTACAAAACACCCC 60.159 50.000 0.00 0.00 38.01 4.95
194 195 2.667171 CGTATGGGTCGCTTTTGGTTTG 60.667 50.000 0.00 0.00 0.00 2.93
196 197 1.161843 CGTATGGGTCGCTTTTGGTT 58.838 50.000 0.00 0.00 0.00 3.67
197 198 2.849081 CGTATGGGTCGCTTTTGGT 58.151 52.632 0.00 0.00 0.00 3.67
205 215 2.749776 TGTCAATATGCGTATGGGTCG 58.250 47.619 0.00 0.00 0.00 4.79
209 219 6.901265 TCAATTCATGTCAATATGCGTATGG 58.099 36.000 0.00 0.00 0.00 2.74
211 221 8.024865 CCATTCAATTCATGTCAATATGCGTAT 58.975 33.333 0.00 0.00 0.00 3.06
215 225 5.407387 GCCCATTCAATTCATGTCAATATGC 59.593 40.000 0.00 0.00 0.00 3.14
226 237 3.191669 CGTACGTAGCCCATTCAATTCA 58.808 45.455 7.22 0.00 0.00 2.57
249 260 3.682377 CACGCATATGAACCACAACAGTA 59.318 43.478 6.97 0.00 0.00 2.74
297 308 1.926561 ACATGTCATGTCCATCGTCG 58.073 50.000 12.87 0.00 39.92 5.12
344 371 3.667960 GCAACAAGTTATCTGGAACGCAG 60.668 47.826 0.00 0.00 34.36 5.18
440 473 1.226295 CACACAGATGCTGCATGCG 60.226 57.895 21.53 12.75 46.63 4.73
532 582 1.268079 GGCTGGTTGACTCTTTTCTGC 59.732 52.381 0.00 0.00 0.00 4.26
535 585 2.278332 AGGGCTGGTTGACTCTTTTC 57.722 50.000 0.00 0.00 0.00 2.29
558 608 3.170672 TGTCCACCCAGCTGTGCT 61.171 61.111 13.81 0.00 40.77 4.40
559 609 2.670934 CTGTCCACCCAGCTGTGC 60.671 66.667 13.81 0.00 34.85 4.57
560 610 0.396435 TAACTGTCCACCCAGCTGTG 59.604 55.000 13.81 3.15 35.83 3.66
561 611 0.396811 GTAACTGTCCACCCAGCTGT 59.603 55.000 13.81 0.00 35.83 4.40
611 661 2.359354 TATGGCCCGTGTGTGTGC 60.359 61.111 0.00 0.00 0.00 4.57
612 662 0.107703 ATCTATGGCCCGTGTGTGTG 60.108 55.000 0.00 0.00 0.00 3.82
613 663 0.618458 AATCTATGGCCCGTGTGTGT 59.382 50.000 0.00 0.00 0.00 3.72
614 664 1.750193 AAATCTATGGCCCGTGTGTG 58.250 50.000 0.00 0.00 0.00 3.82
639 1350 1.172175 TGCCATGTGGTACGTACGTA 58.828 50.000 23.60 23.60 37.57 3.57
640 1351 0.533491 ATGCCATGTGGTACGTACGT 59.467 50.000 25.98 25.98 37.57 3.57
641 1352 0.927537 CATGCCATGTGGTACGTACG 59.072 55.000 18.98 15.01 37.57 3.67
642 1353 2.303163 TCATGCCATGTGGTACGTAC 57.697 50.000 17.56 17.56 37.57 3.67
643 1354 3.118592 TGAATCATGCCATGTGGTACGTA 60.119 43.478 4.31 0.00 37.57 3.57
644 1355 2.288666 GAATCATGCCATGTGGTACGT 58.711 47.619 4.31 0.00 37.57 3.57
645 1356 2.032054 GTGAATCATGCCATGTGGTACG 59.968 50.000 4.31 0.00 37.57 3.67
646 1357 2.032054 CGTGAATCATGCCATGTGGTAC 59.968 50.000 4.31 0.51 37.57 3.34
647 1358 2.093235 TCGTGAATCATGCCATGTGGTA 60.093 45.455 4.31 0.00 37.57 3.25
648 1359 1.097232 CGTGAATCATGCCATGTGGT 58.903 50.000 4.31 0.00 37.57 4.16
649 1360 1.064505 GTCGTGAATCATGCCATGTGG 59.935 52.381 4.31 0.00 38.53 4.17
650 1361 1.064505 GGTCGTGAATCATGCCATGTG 59.935 52.381 4.31 0.00 0.00 3.21
651 1362 1.339920 TGGTCGTGAATCATGCCATGT 60.340 47.619 12.39 0.00 0.00 3.21
652 1363 1.332686 CTGGTCGTGAATCATGCCATG 59.667 52.381 15.38 0.00 30.66 3.66
653 1364 1.671979 CTGGTCGTGAATCATGCCAT 58.328 50.000 15.38 0.00 30.66 4.40
654 1365 1.026182 GCTGGTCGTGAATCATGCCA 61.026 55.000 14.62 14.62 0.00 4.92
655 1366 1.026182 TGCTGGTCGTGAATCATGCC 61.026 55.000 0.00 3.57 0.00 4.40
656 1367 0.376152 CTGCTGGTCGTGAATCATGC 59.624 55.000 0.00 0.00 0.00 4.06
657 1368 0.376152 GCTGCTGGTCGTGAATCATG 59.624 55.000 0.00 0.00 0.00 3.07
658 1369 0.745845 GGCTGCTGGTCGTGAATCAT 60.746 55.000 0.00 0.00 0.00 2.45
659 1370 1.375908 GGCTGCTGGTCGTGAATCA 60.376 57.895 0.00 0.00 0.00 2.57
660 1371 0.674895 AAGGCTGCTGGTCGTGAATC 60.675 55.000 0.00 0.00 0.00 2.52
661 1372 0.957395 CAAGGCTGCTGGTCGTGAAT 60.957 55.000 0.00 0.00 30.82 2.57
689 1404 4.891992 TCTAGTAAGTCTGCCTTTTGCT 57.108 40.909 0.00 0.00 42.00 3.91
695 1410 2.724454 TCGCTTCTAGTAAGTCTGCCT 58.276 47.619 0.00 0.00 0.00 4.75
697 1412 3.066900 TGGATCGCTTCTAGTAAGTCTGC 59.933 47.826 0.00 0.00 0.00 4.26
698 1413 4.902443 TGGATCGCTTCTAGTAAGTCTG 57.098 45.455 0.00 0.00 0.00 3.51
699 1414 5.182380 GCTATGGATCGCTTCTAGTAAGTCT 59.818 44.000 0.00 0.00 0.00 3.24
701 1416 5.048364 CAGCTATGGATCGCTTCTAGTAAGT 60.048 44.000 0.00 0.00 33.45 2.24
702 1417 5.182190 TCAGCTATGGATCGCTTCTAGTAAG 59.818 44.000 0.00 0.00 33.45 2.34
703 1418 5.070685 TCAGCTATGGATCGCTTCTAGTAA 58.929 41.667 0.00 0.00 33.45 2.24
704 1419 4.652822 TCAGCTATGGATCGCTTCTAGTA 58.347 43.478 0.00 0.00 33.45 1.82
705 1420 3.491342 TCAGCTATGGATCGCTTCTAGT 58.509 45.455 0.00 0.00 33.45 2.57
706 1421 4.511617 TTCAGCTATGGATCGCTTCTAG 57.488 45.455 0.00 0.00 33.45 2.43
707 1422 4.937201 TTTCAGCTATGGATCGCTTCTA 57.063 40.909 0.00 0.00 33.45 2.10
708 1423 3.827008 TTTCAGCTATGGATCGCTTCT 57.173 42.857 0.00 0.00 33.45 2.85
709 1424 4.025313 GTCTTTTCAGCTATGGATCGCTTC 60.025 45.833 0.00 0.00 33.45 3.86
710 1425 3.873952 GTCTTTTCAGCTATGGATCGCTT 59.126 43.478 0.00 0.00 33.45 4.68
711 1426 3.462021 GTCTTTTCAGCTATGGATCGCT 58.538 45.455 0.00 0.00 36.83 4.93
712 1427 2.219674 CGTCTTTTCAGCTATGGATCGC 59.780 50.000 0.00 0.00 0.00 4.58
713 1428 3.706698 TCGTCTTTTCAGCTATGGATCG 58.293 45.455 0.00 0.00 0.00 3.69
714 1429 4.938080 TCTCGTCTTTTCAGCTATGGATC 58.062 43.478 0.00 0.00 0.00 3.36
715 1430 4.646945 TCTCTCGTCTTTTCAGCTATGGAT 59.353 41.667 0.00 0.00 0.00 3.41
716 1431 4.017126 TCTCTCGTCTTTTCAGCTATGGA 58.983 43.478 0.00 0.00 0.00 3.41
717 1432 4.142271 ACTCTCTCGTCTTTTCAGCTATGG 60.142 45.833 0.00 0.00 0.00 2.74
718 1433 4.992688 ACTCTCTCGTCTTTTCAGCTATG 58.007 43.478 0.00 0.00 0.00 2.23
719 1434 5.648526 TGTACTCTCTCGTCTTTTCAGCTAT 59.351 40.000 0.00 0.00 0.00 2.97
720 1435 5.001874 TGTACTCTCTCGTCTTTTCAGCTA 58.998 41.667 0.00 0.00 0.00 3.32
732 1447 3.437049 TGTCAGTGATGTGTACTCTCTCG 59.563 47.826 0.00 0.00 0.00 4.04
757 1523 2.743126 GTCGTAGAGAGTACACACAGCT 59.257 50.000 0.00 0.00 36.95 4.24
814 1613 2.043852 GCGAGGTCCCTCTCAGGA 60.044 66.667 11.41 0.00 37.67 3.86
815 1614 3.522731 CGCGAGGTCCCTCTCAGG 61.523 72.222 0.00 0.00 40.69 3.86
882 1685 3.471244 GACCGACGGAGCGATGGAG 62.471 68.421 23.38 0.00 0.00 3.86
924 1761 4.587189 GCTAGCCGGCCGTCGATT 62.587 66.667 26.15 4.77 42.43 3.34
985 1845 0.745845 GACATGCCGCCAACTGAGAT 60.746 55.000 0.00 0.00 0.00 2.75
993 1867 2.741985 CACTTCGACATGCCGCCA 60.742 61.111 0.00 0.00 0.00 5.69
1017 1891 1.214062 CAGCCTCTTCTTCGTCGCT 59.786 57.895 0.00 0.00 0.00 4.93
1186 2060 1.694169 GATCAAGGAGGGGGCAGGA 60.694 63.158 0.00 0.00 0.00 3.86
1188 2062 2.922234 GGATCAAGGAGGGGGCAG 59.078 66.667 0.00 0.00 0.00 4.85
1330 2217 7.061789 CGAATTGGCAGATAAAAACTGTTAACC 59.938 37.037 2.48 0.00 37.64 2.85
1343 2240 4.422073 AGTTCCATCGAATTGGCAGATA 57.578 40.909 0.00 0.00 36.66 1.98
1345 2242 2.787473 AGTTCCATCGAATTGGCAGA 57.213 45.000 0.00 0.00 36.66 4.26
1355 2255 6.613755 AATAAAACCCGATTAGTTCCATCG 57.386 37.500 0.00 0.00 42.68 3.84
1377 2277 7.279758 GGCCTAATAATGCAGCAACAAAATAAA 59.720 33.333 0.00 0.00 0.00 1.40
1381 2281 4.222588 AGGCCTAATAATGCAGCAACAAAA 59.777 37.500 1.29 0.00 0.00 2.44
1493 2396 1.839994 GGAGTGGAGGTGGATGATGAA 59.160 52.381 0.00 0.00 0.00 2.57
1564 2467 4.453819 CAGAAGTTCTTGACCTCATTGTCC 59.546 45.833 1.56 0.00 34.25 4.02
1570 2473 4.982241 ATTCCAGAAGTTCTTGACCTCA 57.018 40.909 1.56 0.00 0.00 3.86
1639 2542 0.597637 CGAGAGGCTTGTGTTCGTGT 60.598 55.000 0.00 0.00 0.00 4.49
1640 2543 0.318699 TCGAGAGGCTTGTGTTCGTG 60.319 55.000 0.00 0.00 33.35 4.35
1641 2544 0.318784 GTCGAGAGGCTTGTGTTCGT 60.319 55.000 0.00 0.00 33.35 3.85
1642 2545 1.009389 GGTCGAGAGGCTTGTGTTCG 61.009 60.000 0.00 0.00 34.89 3.95
1643 2546 0.670854 GGGTCGAGAGGCTTGTGTTC 60.671 60.000 0.00 0.00 34.89 3.18
1644 2547 1.371558 GGGTCGAGAGGCTTGTGTT 59.628 57.895 0.00 0.00 34.89 3.32
1645 2548 2.584391 GGGGTCGAGAGGCTTGTGT 61.584 63.158 0.00 0.00 34.89 3.72
1718 2796 2.796383 GCGACGACAGTATCAGCTCATT 60.796 50.000 0.00 0.00 0.00 2.57
1719 2797 1.268794 GCGACGACAGTATCAGCTCAT 60.269 52.381 0.00 0.00 0.00 2.90
1720 2798 0.098905 GCGACGACAGTATCAGCTCA 59.901 55.000 0.00 0.00 0.00 4.26
1913 2994 4.849329 GCGTCCGCGTCCAGGTAG 62.849 72.222 4.92 0.00 40.81 3.18
1940 3021 2.233605 CTGCCGACGGGATAACACCA 62.234 60.000 17.22 0.99 34.06 4.17
1943 3024 1.216977 CACTGCCGACGGGATAACA 59.783 57.895 17.22 3.34 34.06 2.41
1957 3038 3.123620 GCTCAAGCTCCGCCACTG 61.124 66.667 0.00 0.00 38.21 3.66
1958 3039 1.617018 TATGCTCAAGCTCCGCCACT 61.617 55.000 3.32 0.00 42.66 4.00
1959 3040 0.744414 TTATGCTCAAGCTCCGCCAC 60.744 55.000 3.32 0.00 42.66 5.01
1960 3041 0.462581 CTTATGCTCAAGCTCCGCCA 60.463 55.000 3.32 0.00 42.66 5.69
1961 3042 1.780025 GCTTATGCTCAAGCTCCGCC 61.780 60.000 13.54 0.00 46.04 6.13
1962 3043 1.645997 GCTTATGCTCAAGCTCCGC 59.354 57.895 13.54 0.00 46.04 5.54
1967 3048 9.381078 CCTCTTGGATTATGCTTATGCTCAAGC 62.381 44.444 13.83 13.83 42.67 4.01
1968 3049 6.072618 CCTCTTGGATTATGCTTATGCTCAAG 60.073 42.308 1.96 0.00 36.27 3.02
1969 3050 5.766670 CCTCTTGGATTATGCTTATGCTCAA 59.233 40.000 1.96 0.00 36.27 3.02
1970 3051 5.311265 CCTCTTGGATTATGCTTATGCTCA 58.689 41.667 1.96 0.00 36.27 4.26
1971 3052 4.699257 CCCTCTTGGATTATGCTTATGCTC 59.301 45.833 1.96 0.00 36.72 4.26
1972 3053 4.508047 CCCCTCTTGGATTATGCTTATGCT 60.508 45.833 1.96 0.00 36.72 3.79
1973 3054 3.760684 CCCCTCTTGGATTATGCTTATGC 59.239 47.826 0.00 0.00 35.39 3.14
1974 3055 5.006386 GTCCCCTCTTGGATTATGCTTATG 58.994 45.833 0.00 0.00 36.63 1.90
1975 3056 4.043435 GGTCCCCTCTTGGATTATGCTTAT 59.957 45.833 0.00 0.00 36.63 1.73
1976 3057 3.394606 GGTCCCCTCTTGGATTATGCTTA 59.605 47.826 0.00 0.00 36.63 3.09
1977 3058 2.175715 GGTCCCCTCTTGGATTATGCTT 59.824 50.000 0.00 0.00 36.63 3.91
1978 3059 1.777272 GGTCCCCTCTTGGATTATGCT 59.223 52.381 0.00 0.00 36.63 3.79
1979 3060 1.494721 TGGTCCCCTCTTGGATTATGC 59.505 52.381 0.00 0.00 36.63 3.14
1980 3061 4.147321 CAATGGTCCCCTCTTGGATTATG 58.853 47.826 0.00 0.00 36.63 1.90
1981 3062 3.140895 CCAATGGTCCCCTCTTGGATTAT 59.859 47.826 8.59 0.00 38.43 1.28
1982 3063 2.513738 CCAATGGTCCCCTCTTGGATTA 59.486 50.000 8.59 0.00 38.43 1.75
1983 3064 1.288932 CCAATGGTCCCCTCTTGGATT 59.711 52.381 8.59 0.00 38.43 3.01
1984 3065 0.929244 CCAATGGTCCCCTCTTGGAT 59.071 55.000 8.59 0.00 38.43 3.41
1985 3066 0.477597 ACCAATGGTCCCCTCTTGGA 60.478 55.000 16.84 0.00 38.43 3.53
1986 3067 0.409484 AACCAATGGTCCCCTCTTGG 59.591 55.000 4.95 11.33 40.39 3.61
1987 3068 1.075374 TCAACCAATGGTCCCCTCTTG 59.925 52.381 4.95 0.00 33.12 3.02
1988 3069 1.455822 TCAACCAATGGTCCCCTCTT 58.544 50.000 4.95 0.00 33.12 2.85
1989 3070 1.355720 CTTCAACCAATGGTCCCCTCT 59.644 52.381 4.95 0.00 33.12 3.69
1990 3071 1.616994 CCTTCAACCAATGGTCCCCTC 60.617 57.143 4.95 0.00 33.12 4.30
1991 3072 0.409484 CCTTCAACCAATGGTCCCCT 59.591 55.000 4.95 0.00 33.12 4.79
1992 3073 0.614697 CCCTTCAACCAATGGTCCCC 60.615 60.000 4.95 0.00 33.12 4.81
1993 3074 0.614697 CCCCTTCAACCAATGGTCCC 60.615 60.000 4.95 0.00 33.12 4.46
1994 3075 0.407918 TCCCCTTCAACCAATGGTCC 59.592 55.000 4.95 0.00 33.12 4.46
1995 3076 1.839424 CTCCCCTTCAACCAATGGTC 58.161 55.000 4.95 0.00 33.12 4.02
1996 3077 0.251787 GCTCCCCTTCAACCAATGGT 60.252 55.000 0.00 0.00 37.65 3.55
1997 3078 0.251742 TGCTCCCCTTCAACCAATGG 60.252 55.000 0.00 0.00 0.00 3.16
1998 3079 1.631405 TTGCTCCCCTTCAACCAATG 58.369 50.000 0.00 0.00 0.00 2.82
1999 3080 2.397044 TTTGCTCCCCTTCAACCAAT 57.603 45.000 0.00 0.00 0.00 3.16
2000 3081 2.397044 ATTTGCTCCCCTTCAACCAA 57.603 45.000 0.00 0.00 0.00 3.67
2001 3082 2.397044 AATTTGCTCCCCTTCAACCA 57.603 45.000 0.00 0.00 0.00 3.67
2002 3083 4.383010 CCATTAATTTGCTCCCCTTCAACC 60.383 45.833 0.00 0.00 0.00 3.77
2003 3084 4.383010 CCCATTAATTTGCTCCCCTTCAAC 60.383 45.833 0.00 0.00 0.00 3.18
2004 3085 3.774216 CCCATTAATTTGCTCCCCTTCAA 59.226 43.478 0.00 0.00 0.00 2.69
2005 3086 3.012274 TCCCATTAATTTGCTCCCCTTCA 59.988 43.478 0.00 0.00 0.00 3.02
2006 3087 3.638627 CTCCCATTAATTTGCTCCCCTTC 59.361 47.826 0.00 0.00 0.00 3.46
2007 3088 3.630828 CCTCCCATTAATTTGCTCCCCTT 60.631 47.826 0.00 0.00 0.00 3.95
2008 3089 2.091111 CCTCCCATTAATTTGCTCCCCT 60.091 50.000 0.00 0.00 0.00 4.79
2009 3090 2.091333 TCCTCCCATTAATTTGCTCCCC 60.091 50.000 0.00 0.00 0.00 4.81
2010 3091 3.312736 TCCTCCCATTAATTTGCTCCC 57.687 47.619 0.00 0.00 0.00 4.30
2011 3092 3.638627 CCTTCCTCCCATTAATTTGCTCC 59.361 47.826 0.00 0.00 0.00 4.70
2012 3093 3.638627 CCCTTCCTCCCATTAATTTGCTC 59.361 47.826 0.00 0.00 0.00 4.26
2013 3094 3.630828 CCCCTTCCTCCCATTAATTTGCT 60.631 47.826 0.00 0.00 0.00 3.91
2014 3095 2.700371 CCCCTTCCTCCCATTAATTTGC 59.300 50.000 0.00 0.00 0.00 3.68
2015 3096 2.700371 GCCCCTTCCTCCCATTAATTTG 59.300 50.000 0.00 0.00 0.00 2.32
2016 3097 2.592036 AGCCCCTTCCTCCCATTAATTT 59.408 45.455 0.00 0.00 0.00 1.82
2017 3098 2.226795 AGCCCCTTCCTCCCATTAATT 58.773 47.619 0.00 0.00 0.00 1.40
2018 3099 1.927051 AGCCCCTTCCTCCCATTAAT 58.073 50.000 0.00 0.00 0.00 1.40
2019 3100 2.598288 TAGCCCCTTCCTCCCATTAA 57.402 50.000 0.00 0.00 0.00 1.40
2020 3101 2.598288 TTAGCCCCTTCCTCCCATTA 57.402 50.000 0.00 0.00 0.00 1.90
2021 3102 1.783365 GATTAGCCCCTTCCTCCCATT 59.217 52.381 0.00 0.00 0.00 3.16
2022 3103 1.060244 AGATTAGCCCCTTCCTCCCAT 60.060 52.381 0.00 0.00 0.00 4.00
2023 3104 0.346932 AGATTAGCCCCTTCCTCCCA 59.653 55.000 0.00 0.00 0.00 4.37
2024 3105 1.524037 AAGATTAGCCCCTTCCTCCC 58.476 55.000 0.00 0.00 0.00 4.30
2025 3106 3.717392 ACTAAAGATTAGCCCCTTCCTCC 59.283 47.826 0.00 0.00 0.00 4.30
2026 3107 5.375283 AACTAAAGATTAGCCCCTTCCTC 57.625 43.478 0.00 0.00 0.00 3.71
2027 3108 5.798239 AAACTAAAGATTAGCCCCTTCCT 57.202 39.130 0.00 0.00 0.00 3.36
2028 3109 7.061054 ACATAAACTAAAGATTAGCCCCTTCC 58.939 38.462 0.00 0.00 0.00 3.46
2029 3110 8.521170 AACATAAACTAAAGATTAGCCCCTTC 57.479 34.615 0.00 0.00 0.00 3.46
2030 3111 9.984590 TTAACATAAACTAAAGATTAGCCCCTT 57.015 29.630 0.00 0.00 0.00 3.95
2031 3112 9.628500 CTTAACATAAACTAAAGATTAGCCCCT 57.372 33.333 0.00 0.00 0.00 4.79
2032 3113 8.847196 CCTTAACATAAACTAAAGATTAGCCCC 58.153 37.037 0.00 0.00 0.00 5.80
2033 3114 9.623000 TCCTTAACATAAACTAAAGATTAGCCC 57.377 33.333 0.00 0.00 0.00 5.19
2068 3149 8.860088 GGTTGTTAAGCATGGATTATTAGGATT 58.140 33.333 0.00 0.00 0.00 3.01
2069 3150 7.174946 CGGTTGTTAAGCATGGATTATTAGGAT 59.825 37.037 0.00 0.00 0.00 3.24
2070 3151 6.485313 CGGTTGTTAAGCATGGATTATTAGGA 59.515 38.462 0.00 0.00 0.00 2.94
2071 3152 6.668323 CGGTTGTTAAGCATGGATTATTAGG 58.332 40.000 0.00 0.00 0.00 2.69
2072 3153 6.142817 GCGGTTGTTAAGCATGGATTATTAG 58.857 40.000 0.00 0.00 0.00 1.73
2073 3154 5.009210 GGCGGTTGTTAAGCATGGATTATTA 59.991 40.000 0.00 0.00 0.00 0.98
2074 3155 4.202111 GGCGGTTGTTAAGCATGGATTATT 60.202 41.667 0.00 0.00 0.00 1.40
2075 3156 3.317993 GGCGGTTGTTAAGCATGGATTAT 59.682 43.478 0.00 0.00 0.00 1.28
2076 3157 2.685897 GGCGGTTGTTAAGCATGGATTA 59.314 45.455 0.00 0.00 0.00 1.75
2077 3158 1.476488 GGCGGTTGTTAAGCATGGATT 59.524 47.619 0.00 0.00 0.00 3.01
2078 3159 1.102978 GGCGGTTGTTAAGCATGGAT 58.897 50.000 0.00 0.00 0.00 3.41
2079 3160 0.037590 AGGCGGTTGTTAAGCATGGA 59.962 50.000 0.00 0.00 0.00 3.41
2080 3161 0.887933 AAGGCGGTTGTTAAGCATGG 59.112 50.000 0.00 0.00 0.00 3.66
2081 3162 2.097466 CCTAAGGCGGTTGTTAAGCATG 59.903 50.000 0.00 0.00 0.00 4.06
2082 3163 2.290705 ACCTAAGGCGGTTGTTAAGCAT 60.291 45.455 0.00 0.00 31.94 3.79
2083 3164 1.072648 ACCTAAGGCGGTTGTTAAGCA 59.927 47.619 0.00 0.00 31.94 3.91
2084 3165 1.817357 ACCTAAGGCGGTTGTTAAGC 58.183 50.000 0.00 0.00 31.94 3.09
2085 3166 4.572909 ACTTACCTAAGGCGGTTGTTAAG 58.427 43.478 0.00 0.00 38.49 1.85
2086 3167 4.622260 ACTTACCTAAGGCGGTTGTTAA 57.378 40.909 0.00 0.00 38.49 2.01
2087 3168 4.381932 GCTACTTACCTAAGGCGGTTGTTA 60.382 45.833 0.00 0.00 38.49 2.41
2088 3169 3.618263 GCTACTTACCTAAGGCGGTTGTT 60.618 47.826 0.00 0.00 38.49 2.83
2089 3170 2.093816 GCTACTTACCTAAGGCGGTTGT 60.094 50.000 0.00 0.00 38.49 3.32
2090 3171 2.547826 GCTACTTACCTAAGGCGGTTG 58.452 52.381 0.00 0.00 38.49 3.77
2091 3172 1.483827 GGCTACTTACCTAAGGCGGTT 59.516 52.381 0.00 0.00 38.49 4.44
2092 3173 1.117994 GGCTACTTACCTAAGGCGGT 58.882 55.000 0.00 0.00 41.10 5.68
2093 3174 3.982709 GGCTACTTACCTAAGGCGG 57.017 57.895 0.00 0.00 37.62 6.13
2095 3176 1.753073 TGACGGCTACTTACCTAAGGC 59.247 52.381 0.00 0.00 37.62 4.35
2096 3177 4.369182 CAATGACGGCTACTTACCTAAGG 58.631 47.826 0.00 0.00 37.62 2.69
2097 3178 4.142004 ACCAATGACGGCTACTTACCTAAG 60.142 45.833 0.00 0.00 39.18 2.18
2098 3179 3.770933 ACCAATGACGGCTACTTACCTAA 59.229 43.478 0.00 0.00 0.00 2.69
2099 3180 3.368248 ACCAATGACGGCTACTTACCTA 58.632 45.455 0.00 0.00 0.00 3.08
2100 3181 2.185387 ACCAATGACGGCTACTTACCT 58.815 47.619 0.00 0.00 0.00 3.08
2101 3182 2.685850 ACCAATGACGGCTACTTACC 57.314 50.000 0.00 0.00 0.00 2.85
2102 3183 3.867493 GGTAACCAATGACGGCTACTTAC 59.133 47.826 0.00 0.00 29.90 2.34
2103 3184 3.429272 CGGTAACCAATGACGGCTACTTA 60.429 47.826 0.00 0.00 29.90 2.24
2104 3185 2.675889 CGGTAACCAATGACGGCTACTT 60.676 50.000 0.00 0.00 29.90 2.24
2105 3186 1.134907 CGGTAACCAATGACGGCTACT 60.135 52.381 0.00 0.00 29.90 2.57
2106 3187 1.283736 CGGTAACCAATGACGGCTAC 58.716 55.000 0.00 0.00 0.00 3.58
2107 3188 0.460635 GCGGTAACCAATGACGGCTA 60.461 55.000 0.00 0.00 38.47 3.93
2108 3189 1.743995 GCGGTAACCAATGACGGCT 60.744 57.895 0.00 0.00 38.47 5.52
2109 3190 2.757056 GGCGGTAACCAATGACGGC 61.757 63.158 0.00 0.00 42.56 5.68
2110 3191 0.675522 AAGGCGGTAACCAATGACGG 60.676 55.000 0.00 0.00 0.00 4.79
2111 3192 1.161843 AAAGGCGGTAACCAATGACG 58.838 50.000 0.00 0.00 0.00 4.35
2112 3193 3.066203 CCATAAAGGCGGTAACCAATGAC 59.934 47.826 0.00 0.00 0.00 3.06
2113 3194 3.283751 CCATAAAGGCGGTAACCAATGA 58.716 45.455 0.00 0.00 0.00 2.57
2114 3195 3.020984 ACCATAAAGGCGGTAACCAATG 58.979 45.455 0.00 0.00 43.14 2.82
2115 3196 3.020984 CACCATAAAGGCGGTAACCAAT 58.979 45.455 0.00 0.00 43.14 3.16
2116 3197 2.224818 ACACCATAAAGGCGGTAACCAA 60.225 45.455 0.00 0.00 43.14 3.67
2117 3198 1.351683 ACACCATAAAGGCGGTAACCA 59.648 47.619 0.00 0.00 43.14 3.67
2118 3199 2.011947 GACACCATAAAGGCGGTAACC 58.988 52.381 0.00 0.00 43.14 2.85
2119 3200 2.011947 GGACACCATAAAGGCGGTAAC 58.988 52.381 0.00 0.00 43.14 2.50
2120 3201 1.910671 AGGACACCATAAAGGCGGTAA 59.089 47.619 0.00 0.00 43.14 2.85
2121 3202 1.575419 AGGACACCATAAAGGCGGTA 58.425 50.000 0.00 0.00 43.14 4.02
2122 3203 0.696501 AAGGACACCATAAAGGCGGT 59.303 50.000 0.00 0.00 43.14 5.68
2123 3204 1.472480 CAAAGGACACCATAAAGGCGG 59.528 52.381 0.00 0.00 43.14 6.13
2124 3205 2.159382 ACAAAGGACACCATAAAGGCG 58.841 47.619 0.00 0.00 43.14 5.52
2125 3206 5.709966 CTTTACAAAGGACACCATAAAGGC 58.290 41.667 0.00 0.00 34.88 4.35
2139 3220 0.437295 CGGACGCGACCTTTACAAAG 59.563 55.000 24.38 3.38 35.79 2.77
2140 3221 0.249405 ACGGACGCGACCTTTACAAA 60.249 50.000 24.38 0.00 0.00 2.83
2141 3222 0.249405 AACGGACGCGACCTTTACAA 60.249 50.000 24.38 0.00 0.00 2.41
2142 3223 0.664166 GAACGGACGCGACCTTTACA 60.664 55.000 24.38 0.00 0.00 2.41
2143 3224 0.664166 TGAACGGACGCGACCTTTAC 60.664 55.000 24.38 15.04 0.00 2.01
2144 3225 0.031857 TTGAACGGACGCGACCTTTA 59.968 50.000 24.38 11.91 0.00 1.85
2145 3226 1.227321 TTGAACGGACGCGACCTTT 60.227 52.632 24.38 21.34 0.00 3.11
2146 3227 1.952635 GTTGAACGGACGCGACCTT 60.953 57.895 24.38 13.57 0.00 3.50
2147 3228 2.355481 GTTGAACGGACGCGACCT 60.355 61.111 24.38 7.59 0.00 3.85
2148 3229 3.759828 CGTTGAACGGACGCGACC 61.760 66.667 15.93 17.09 38.08 4.79
2153 3234 3.759828 GGACGCGTTGAACGGACG 61.760 66.667 20.01 16.85 42.82 4.79
2154 3235 3.408851 GGGACGCGTTGAACGGAC 61.409 66.667 20.01 9.53 42.82 4.79
2155 3236 4.668118 GGGGACGCGTTGAACGGA 62.668 66.667 20.01 0.00 42.82 4.69
2156 3237 4.675029 AGGGGACGCGTTGAACGG 62.675 66.667 20.01 11.76 42.82 4.44
2157 3238 3.110178 GAGGGGACGCGTTGAACG 61.110 66.667 15.53 14.16 45.88 3.95
2158 3239 2.029964 TGAGGGGACGCGTTGAAC 59.970 61.111 15.53 4.48 0.00 3.18
2159 3240 2.029964 GTGAGGGGACGCGTTGAA 59.970 61.111 15.53 0.00 0.00 2.69
2160 3241 2.035237 AAAGTGAGGGGACGCGTTGA 62.035 55.000 15.53 0.00 0.00 3.18
2161 3242 1.597027 AAAGTGAGGGGACGCGTTG 60.597 57.895 15.53 0.00 0.00 4.10
2162 3243 1.597027 CAAAGTGAGGGGACGCGTT 60.597 57.895 15.53 0.00 0.00 4.84
2163 3244 1.466025 TACAAAGTGAGGGGACGCGT 61.466 55.000 13.85 13.85 0.00 6.01
2164 3245 0.108329 ATACAAAGTGAGGGGACGCG 60.108 55.000 3.53 3.53 0.00 6.01
2165 3246 2.973694 TATACAAAGTGAGGGGACGC 57.026 50.000 0.00 0.00 0.00 5.19
2166 3247 6.331061 GCTATATATACAAAGTGAGGGGACG 58.669 44.000 0.00 0.00 0.00 4.79
2167 3248 6.440965 AGGCTATATATACAAAGTGAGGGGAC 59.559 42.308 0.00 0.00 0.00 4.46
2168 3249 6.571624 AGGCTATATATACAAAGTGAGGGGA 58.428 40.000 0.00 0.00 0.00 4.81
2169 3250 6.875972 AGGCTATATATACAAAGTGAGGGG 57.124 41.667 0.00 0.00 0.00 4.79
2170 3251 7.680730 ACAAGGCTATATATACAAAGTGAGGG 58.319 38.462 0.00 0.00 0.00 4.30
2171 3252 9.561069 AAACAAGGCTATATATACAAAGTGAGG 57.439 33.333 0.00 0.00 0.00 3.86
2173 3254 9.899661 ACAAACAAGGCTATATATACAAAGTGA 57.100 29.630 0.00 0.00 0.00 3.41
2175 3256 9.899661 TGACAAACAAGGCTATATATACAAAGT 57.100 29.630 0.00 0.00 0.00 2.66
2185 3266 9.461312 ACTTTATTGATGACAAACAAGGCTATA 57.539 29.630 0.00 0.00 39.54 1.31
2186 3267 8.246180 CACTTTATTGATGACAAACAAGGCTAT 58.754 33.333 0.00 0.00 39.54 2.97
2187 3268 7.446931 TCACTTTATTGATGACAAACAAGGCTA 59.553 33.333 0.00 0.00 39.54 3.93
2188 3269 6.265196 TCACTTTATTGATGACAAACAAGGCT 59.735 34.615 0.00 0.00 39.54 4.58
2189 3270 6.446318 TCACTTTATTGATGACAAACAAGGC 58.554 36.000 0.00 0.00 39.54 4.35
2190 3271 9.559958 GTATCACTTTATTGATGACAAACAAGG 57.440 33.333 0.00 0.00 39.54 3.61
2193 3274 9.283768 ACAGTATCACTTTATTGATGACAAACA 57.716 29.630 0.00 0.00 39.54 2.83
2202 3283 9.967451 TGGGAATAAACAGTATCACTTTATTGA 57.033 29.630 0.00 0.00 27.34 2.57
2209 3290 9.273016 CGAATAATGGGAATAAACAGTATCACT 57.727 33.333 0.00 0.00 28.84 3.41
2210 3291 8.015658 GCGAATAATGGGAATAAACAGTATCAC 58.984 37.037 0.00 0.00 28.84 3.06
2211 3292 7.936847 AGCGAATAATGGGAATAAACAGTATCA 59.063 33.333 0.00 0.00 28.84 2.15
2212 3293 8.324163 AGCGAATAATGGGAATAAACAGTATC 57.676 34.615 0.00 0.00 28.84 2.24
2213 3294 7.390718 GGAGCGAATAATGGGAATAAACAGTAT 59.609 37.037 0.00 0.00 30.10 2.12
2214 3295 6.708949 GGAGCGAATAATGGGAATAAACAGTA 59.291 38.462 0.00 0.00 0.00 2.74
2215 3296 5.531287 GGAGCGAATAATGGGAATAAACAGT 59.469 40.000 0.00 0.00 0.00 3.55
2216 3297 5.765182 AGGAGCGAATAATGGGAATAAACAG 59.235 40.000 0.00 0.00 0.00 3.16
2217 3298 5.690865 AGGAGCGAATAATGGGAATAAACA 58.309 37.500 0.00 0.00 0.00 2.83
2218 3299 5.998363 AGAGGAGCGAATAATGGGAATAAAC 59.002 40.000 0.00 0.00 0.00 2.01
2219 3300 6.043243 AGAGAGGAGCGAATAATGGGAATAAA 59.957 38.462 0.00 0.00 0.00 1.40
2220 3301 5.544176 AGAGAGGAGCGAATAATGGGAATAA 59.456 40.000 0.00 0.00 0.00 1.40
2221 3302 5.087323 AGAGAGGAGCGAATAATGGGAATA 58.913 41.667 0.00 0.00 0.00 1.75
2222 3303 3.906846 AGAGAGGAGCGAATAATGGGAAT 59.093 43.478 0.00 0.00 0.00 3.01
2223 3304 3.309296 AGAGAGGAGCGAATAATGGGAA 58.691 45.455 0.00 0.00 0.00 3.97
2224 3305 2.894126 GAGAGAGGAGCGAATAATGGGA 59.106 50.000 0.00 0.00 0.00 4.37
2225 3306 2.896685 AGAGAGAGGAGCGAATAATGGG 59.103 50.000 0.00 0.00 0.00 4.00
2230 3311 4.141597 TGAAGAGAGAGAGAGGAGCGAATA 60.142 45.833 0.00 0.00 0.00 1.75
2249 3330 5.061684 TGCGTGATAACGTGTAAAGATGAAG 59.938 40.000 4.14 0.00 35.26 3.02
2300 3382 1.733399 GTGGTGCCGTCGAGTTCTC 60.733 63.158 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.