Multiple sequence alignment - TraesCS2B01G177100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G177100 chr2B 100.000 2279 0 0 1 2279 152176965 152174687 0.000000e+00 4209.0
1 TraesCS2B01G177100 chr2A 85.310 1096 62 43 252 1326 100130382 100129365 0.000000e+00 1040.0
2 TraesCS2B01G177100 chr2A 83.405 464 40 17 1524 1979 100129144 100128710 1.640000e-106 396.0
3 TraesCS2B01G177100 chr2D 84.757 1089 68 46 52 1109 100319364 100318343 0.000000e+00 1002.0
4 TraesCS2B01G177100 chr2D 83.446 1039 65 35 1154 2137 100318260 100317274 0.000000e+00 867.0
5 TraesCS2B01G177100 chr2D 79.800 500 50 24 1167 1629 250920852 250920367 1.310000e-82 316.0
6 TraesCS2B01G177100 chr2D 79.678 497 49 28 1170 1629 397962631 397962150 6.110000e-81 311.0
7 TraesCS2B01G177100 chr2D 79.310 493 52 23 1170 1626 54392833 54393311 1.320000e-77 300.0
8 TraesCS2B01G177100 chr2D 92.105 114 8 1 994 1106 397962832 397962719 2.340000e-35 159.0
9 TraesCS2B01G177100 chr2D 91.228 114 9 1 994 1106 54392632 54392745 1.090000e-33 154.0
10 TraesCS2B01G177100 chr2D 86.131 137 17 2 2143 2279 213692000 213691866 1.820000e-31 147.0
11 TraesCS2B01G177100 chr3B 83.605 860 55 34 1153 1977 245922712 245921904 0.000000e+00 728.0
12 TraesCS2B01G177100 chr3B 86.853 502 15 25 615 1102 245923253 245922789 4.340000e-142 514.0
13 TraesCS2B01G177100 chr3B 100.000 42 0 0 1 42 424781222 424781263 6.750000e-11 78.7
14 TraesCS2B01G177100 chr3D 85.800 669 42 21 1334 1980 284205958 284205321 0.000000e+00 660.0
15 TraesCS2B01G177100 chr3D 87.052 502 14 26 615 1102 284206526 284206062 9.330000e-144 520.0
16 TraesCS2B01G177100 chr3D 100.000 41 0 0 1 41 590161410 590161450 2.430000e-10 76.8
17 TraesCS2B01G177100 chr3D 100.000 40 0 0 1 40 501815545 501815506 8.730000e-10 75.0
18 TraesCS2B01G177100 chr7B 85.421 487 21 24 615 1087 29687456 29687906 5.740000e-126 460.0
19 TraesCS2B01G177100 chr7B 86.589 343 19 7 1644 1980 29703858 29704179 1.000000e-93 353.0
20 TraesCS2B01G177100 chr7B 83.881 335 27 16 1334 1652 29687937 29688260 6.160000e-76 294.0
21 TraesCS2B01G177100 chr7B 97.674 43 1 0 1 43 163313492 163313534 8.730000e-10 75.0
22 TraesCS2B01G177100 chr7B 80.435 92 16 2 2162 2252 586055592 586055682 4.060000e-08 69.4
23 TraesCS2B01G177100 chr7B 84.058 69 10 1 2189 2257 681745886 681745819 5.250000e-07 65.8
24 TraesCS2B01G177100 chr6D 80.483 497 46 22 1167 1626 288070305 288070787 1.300000e-87 333.0
25 TraesCS2B01G177100 chr7A 80.000 490 50 21 1174 1629 342305315 342304840 3.650000e-83 318.0
26 TraesCS2B01G177100 chr7A 82.869 251 16 11 1175 1405 533367614 533367371 1.380000e-47 200.0
27 TraesCS2B01G177100 chr7A 80.870 230 33 5 1404 1629 533341279 533341057 1.080000e-38 171.0
28 TraesCS2B01G177100 chr7A 92.105 114 8 1 994 1106 342305521 342305408 2.340000e-35 159.0
29 TraesCS2B01G177100 chr7A 91.228 114 9 1 994 1106 533367821 533367708 1.090000e-33 154.0
30 TraesCS2B01G177100 chr7A 86.111 108 15 0 2145 2252 510466144 510466251 1.430000e-22 117.0
31 TraesCS2B01G177100 chr7A 100.000 41 0 0 1 41 429167826 429167866 2.430000e-10 76.8
32 TraesCS2B01G177100 chr1D 80.164 489 46 20 1174 1626 465260586 465261059 3.650000e-83 318.0
33 TraesCS2B01G177100 chr1D 100.000 40 0 0 1 40 111554342 111554381 8.730000e-10 75.0
34 TraesCS2B01G177100 chr1D 83.099 71 8 4 2196 2264 370239540 370239472 6.800000e-06 62.1
35 TraesCS2B01G177100 chr7D 79.555 494 50 22 1170 1626 157759051 157759530 2.840000e-79 305.0
36 TraesCS2B01G177100 chr3A 93.617 141 9 0 2139 2279 22321781 22321641 6.380000e-51 211.0
37 TraesCS2B01G177100 chr6B 95.050 101 5 0 2179 2279 704681494 704681394 2.340000e-35 159.0
38 TraesCS2B01G177100 chr5D 100.000 40 0 0 1 40 455834010 455833971 8.730000e-10 75.0
39 TraesCS2B01G177100 chr5D 100.000 40 0 0 1 40 459237589 459237550 8.730000e-10 75.0
40 TraesCS2B01G177100 chr1A 100.000 40 0 0 1 40 498800953 498800914 8.730000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G177100 chr2B 152174687 152176965 2278 True 4209.0 4209 100.0000 1 2279 1 chr2B.!!$R1 2278
1 TraesCS2B01G177100 chr2A 100128710 100130382 1672 True 718.0 1040 84.3575 252 1979 2 chr2A.!!$R1 1727
2 TraesCS2B01G177100 chr2D 100317274 100319364 2090 True 934.5 1002 84.1015 52 2137 2 chr2D.!!$R3 2085
3 TraesCS2B01G177100 chr2D 397962150 397962832 682 True 235.0 311 85.8915 994 1629 2 chr2D.!!$R4 635
4 TraesCS2B01G177100 chr2D 54392632 54393311 679 False 227.0 300 85.2690 994 1626 2 chr2D.!!$F1 632
5 TraesCS2B01G177100 chr3B 245921904 245923253 1349 True 621.0 728 85.2290 615 1977 2 chr3B.!!$R1 1362
6 TraesCS2B01G177100 chr3D 284205321 284206526 1205 True 590.0 660 86.4260 615 1980 2 chr3D.!!$R2 1365
7 TraesCS2B01G177100 chr7B 29687456 29688260 804 False 377.0 460 84.6510 615 1652 2 chr7B.!!$F4 1037
8 TraesCS2B01G177100 chr7A 342304840 342305521 681 True 238.5 318 86.0525 994 1629 2 chr7A.!!$R2 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 182 0.302890 GCATGATTGACGGAGCTTCG 59.697 55.0 14.32 14.32 0.00 3.79 F
850 898 0.315568 ATAATCTCGGGCTCGTCTGC 59.684 55.0 5.57 0.00 37.69 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1130 1205 0.035056 ACAAGCCCAGTGCATAGTCC 60.035 55.0 0.0 0.0 44.83 3.85 R
2191 2405 0.102844 GCTGTTTGTGCTTTGGCTGA 59.897 50.0 0.0 0.0 39.59 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 6.897259 TTTTGTTAAATACTCGATCCCTCG 57.103 37.500 0.00 0.00 46.41 4.63
49 50 3.973657 TGTTAAATACTCGATCCCTCGC 58.026 45.455 0.00 0.00 44.65 5.03
50 51 3.382227 TGTTAAATACTCGATCCCTCGCA 59.618 43.478 0.00 0.00 44.65 5.10
51 52 4.142116 TGTTAAATACTCGATCCCTCGCAA 60.142 41.667 0.00 0.00 44.65 4.85
52 53 3.753294 AAATACTCGATCCCTCGCAAT 57.247 42.857 0.00 0.00 44.65 3.56
53 54 4.866508 AAATACTCGATCCCTCGCAATA 57.133 40.909 0.00 0.00 44.65 1.90
54 55 4.866508 AATACTCGATCCCTCGCAATAA 57.133 40.909 0.00 0.00 44.65 1.40
55 56 2.510768 ACTCGATCCCTCGCAATAAC 57.489 50.000 0.00 0.00 44.65 1.89
56 57 1.269102 ACTCGATCCCTCGCAATAACG 60.269 52.381 0.00 0.00 44.65 3.18
57 58 0.596600 TCGATCCCTCGCAATAACGC 60.597 55.000 0.00 0.00 44.65 4.84
83 84 3.616379 GCTTAGCTCATCTCAGTTGTCAC 59.384 47.826 0.00 0.00 0.00 3.67
84 85 2.360553 AGCTCATCTCAGTTGTCACG 57.639 50.000 0.00 0.00 0.00 4.35
85 86 1.889170 AGCTCATCTCAGTTGTCACGA 59.111 47.619 0.00 0.00 0.00 4.35
86 87 2.297315 AGCTCATCTCAGTTGTCACGAA 59.703 45.455 0.00 0.00 0.00 3.85
88 89 3.858877 GCTCATCTCAGTTGTCACGAACT 60.859 47.826 0.00 0.00 36.58 3.01
89 90 3.902150 TCATCTCAGTTGTCACGAACTC 58.098 45.455 0.00 0.00 33.75 3.01
90 91 3.317993 TCATCTCAGTTGTCACGAACTCA 59.682 43.478 0.00 0.00 33.75 3.41
91 92 3.079960 TCTCAGTTGTCACGAACTCAC 57.920 47.619 0.00 0.00 33.75 3.51
92 93 1.781429 CTCAGTTGTCACGAACTCACG 59.219 52.381 0.00 0.00 33.75 4.35
93 94 1.402613 TCAGTTGTCACGAACTCACGA 59.597 47.619 0.00 0.00 33.75 4.35
96 97 3.050619 AGTTGTCACGAACTCACGATTC 58.949 45.455 0.00 0.00 29.85 2.52
103 104 2.247637 CGAACTCACGATTCGCTACAA 58.752 47.619 5.86 0.00 42.11 2.41
111 112 5.168569 TCACGATTCGCTACAAGAAAGAAT 58.831 37.500 5.86 0.00 34.64 2.40
112 113 6.327154 TCACGATTCGCTACAAGAAAGAATA 58.673 36.000 5.86 0.00 32.42 1.75
134 135 2.927014 GCGTCTAACAAGTGGTCTCCAG 60.927 54.545 0.00 0.00 32.34 3.86
136 137 3.243771 CGTCTAACAAGTGGTCTCCAGTT 60.244 47.826 3.34 3.34 46.84 3.16
139 140 6.285990 GTCTAACAAGTGGTCTCCAGTTTTA 58.714 40.000 6.17 7.85 43.85 1.52
141 142 3.477530 ACAAGTGGTCTCCAGTTTTAGC 58.522 45.455 6.17 0.00 43.85 3.09
153 154 3.969250 TTTTAGCAGCCCGGCCTCG 62.969 63.158 5.55 0.00 0.00 4.63
165 167 3.207669 GCCTCGGCCTCTTGCATG 61.208 66.667 0.00 0.00 43.89 4.06
171 173 0.379669 CGGCCTCTTGCATGATTGAC 59.620 55.000 0.00 0.00 43.89 3.18
172 174 0.379669 GGCCTCTTGCATGATTGACG 59.620 55.000 2.33 0.00 43.89 4.35
180 182 0.302890 GCATGATTGACGGAGCTTCG 59.697 55.000 14.32 14.32 0.00 3.79
189 191 1.521681 CGGAGCTTCGGACCATTCC 60.522 63.158 6.48 0.00 38.77 3.01
209 211 0.681243 GGAGGAAACAGGCCATGGAC 60.681 60.000 18.40 14.73 0.00 4.02
210 212 0.681243 GAGGAAACAGGCCATGGACC 60.681 60.000 16.13 15.57 0.00 4.46
211 213 1.682344 GGAAACAGGCCATGGACCC 60.682 63.158 16.13 7.20 0.00 4.46
212 214 1.682344 GAAACAGGCCATGGACCCC 60.682 63.158 16.13 6.34 0.00 4.95
213 215 2.155197 GAAACAGGCCATGGACCCCT 62.155 60.000 16.13 9.01 0.00 4.79
214 216 1.739608 AAACAGGCCATGGACCCCTT 61.740 55.000 16.13 1.21 0.00 3.95
215 217 2.043652 CAGGCCATGGACCCCTTG 60.044 66.667 16.13 1.05 0.00 3.61
216 218 2.535317 AGGCCATGGACCCCTTGT 60.535 61.111 16.13 0.00 0.00 3.16
217 219 1.230149 AGGCCATGGACCCCTTGTA 60.230 57.895 16.13 0.00 0.00 2.41
218 220 1.076995 GGCCATGGACCCCTTGTAC 60.077 63.158 18.40 0.00 0.00 2.90
219 221 1.688811 GCCATGGACCCCTTGTACA 59.311 57.895 18.40 0.00 43.64 2.90
220 222 0.394352 GCCATGGACCCCTTGTACAG 60.394 60.000 18.40 0.00 42.45 2.74
221 223 0.394352 CCATGGACCCCTTGTACAGC 60.394 60.000 5.56 0.00 42.45 4.40
222 224 0.620556 CATGGACCCCTTGTACAGCT 59.379 55.000 0.00 0.00 42.45 4.24
223 225 1.837439 CATGGACCCCTTGTACAGCTA 59.163 52.381 0.00 0.00 42.45 3.32
224 226 1.272807 TGGACCCCTTGTACAGCTAC 58.727 55.000 0.00 0.00 30.83 3.58
225 227 1.203262 TGGACCCCTTGTACAGCTACT 60.203 52.381 0.00 0.00 30.83 2.57
226 228 1.207329 GGACCCCTTGTACAGCTACTG 59.793 57.143 0.00 0.00 37.52 2.74
227 229 0.613777 ACCCCTTGTACAGCTACTGC 59.386 55.000 0.00 0.00 34.37 4.40
239 250 3.442625 ACAGCTACTGCACTACGTAATGA 59.557 43.478 8.45 0.00 42.74 2.57
241 252 3.442625 AGCTACTGCACTACGTAATGACA 59.557 43.478 8.45 4.74 42.74 3.58
242 253 4.098044 AGCTACTGCACTACGTAATGACAT 59.902 41.667 8.45 0.00 42.74 3.06
254 265 4.740205 ACGTAATGACATGATCGCACTAAG 59.260 41.667 0.00 0.00 0.00 2.18
329 340 4.172512 CCGGATGCCTGCTCTGCT 62.173 66.667 0.00 0.00 0.00 4.24
330 341 2.588314 CGGATGCCTGCTCTGCTC 60.588 66.667 0.00 0.00 0.00 4.26
331 342 2.909577 GGATGCCTGCTCTGCTCT 59.090 61.111 0.00 0.00 0.00 4.09
332 343 1.227615 GGATGCCTGCTCTGCTCTC 60.228 63.158 0.00 0.00 0.00 3.20
333 344 1.592131 GATGCCTGCTCTGCTCTCG 60.592 63.158 0.00 0.00 0.00 4.04
360 371 1.098050 GCATGATGAGGGCTTTTCGT 58.902 50.000 0.00 0.00 0.00 3.85
418 430 1.380524 TCCGTTTCAAAGGCGAACAA 58.619 45.000 0.00 0.00 0.00 2.83
463 476 1.599797 CCTTGTTTCCCGCTTCGGT 60.600 57.895 4.47 0.00 46.80 4.69
488 501 2.325082 GGAAGTGCATGGCGACGTT 61.325 57.895 0.00 0.00 0.00 3.99
523 540 6.059787 AGTCAAATTTGGCTGAGATAGAGT 57.940 37.500 23.99 0.00 42.44 3.24
524 541 7.187824 AGTCAAATTTGGCTGAGATAGAGTA 57.812 36.000 23.99 0.00 42.44 2.59
525 542 7.044798 AGTCAAATTTGGCTGAGATAGAGTAC 58.955 38.462 23.99 6.63 42.44 2.73
526 543 7.044798 GTCAAATTTGGCTGAGATAGAGTACT 58.955 38.462 15.52 0.00 0.00 2.73
527 544 8.198109 GTCAAATTTGGCTGAGATAGAGTACTA 58.802 37.037 15.52 0.00 0.00 1.82
528 545 8.198109 TCAAATTTGGCTGAGATAGAGTACTAC 58.802 37.037 17.90 0.00 0.00 2.73
529 546 7.661536 AATTTGGCTGAGATAGAGTACTACA 57.338 36.000 0.00 0.00 0.00 2.74
530 547 7.661536 ATTTGGCTGAGATAGAGTACTACAA 57.338 36.000 0.00 0.00 0.00 2.41
531 548 6.701145 TTGGCTGAGATAGAGTACTACAAG 57.299 41.667 0.00 0.00 0.00 3.16
533 550 5.104067 TGGCTGAGATAGAGTACTACAAGGA 60.104 44.000 0.00 0.00 0.00 3.36
534 551 5.472137 GGCTGAGATAGAGTACTACAAGGAG 59.528 48.000 0.00 0.00 0.00 3.69
535 552 6.059484 GCTGAGATAGAGTACTACAAGGAGT 58.941 44.000 0.00 0.00 0.00 3.85
536 553 6.017440 GCTGAGATAGAGTACTACAAGGAGTG 60.017 46.154 0.00 0.00 0.00 3.51
537 554 7.196637 TGAGATAGAGTACTACAAGGAGTGA 57.803 40.000 0.00 0.00 0.00 3.41
538 555 7.049133 TGAGATAGAGTACTACAAGGAGTGAC 58.951 42.308 0.00 0.00 0.00 3.67
539 556 6.358991 AGATAGAGTACTACAAGGAGTGACC 58.641 44.000 0.00 0.00 39.35 4.02
543 560 2.289592 ACTACAAGGAGTGACCGAGT 57.710 50.000 0.00 0.00 44.74 4.18
591 610 4.393155 AAGGCGCGTCCATGCAGA 62.393 61.111 19.30 0.00 37.29 4.26
850 898 0.315568 ATAATCTCGGGCTCGTCTGC 59.684 55.000 5.57 0.00 37.69 4.26
892 940 4.264442 ACATCACTCTACTCCACCTACCTT 60.264 45.833 0.00 0.00 0.00 3.50
920 968 2.941720 GCTCCTTGTTCACATCATCTCC 59.058 50.000 0.00 0.00 0.00 3.71
921 969 3.539604 CTCCTTGTTCACATCATCTCCC 58.460 50.000 0.00 0.00 0.00 4.30
922 970 3.184628 TCCTTGTTCACATCATCTCCCT 58.815 45.455 0.00 0.00 0.00 4.20
923 971 3.588842 TCCTTGTTCACATCATCTCCCTT 59.411 43.478 0.00 0.00 0.00 3.95
924 972 3.693085 CCTTGTTCACATCATCTCCCTTG 59.307 47.826 0.00 0.00 0.00 3.61
960 1008 1.647346 GACGCTTCGAGAGAGAGAGA 58.353 55.000 5.63 0.00 43.69 3.10
961 1009 1.593006 GACGCTTCGAGAGAGAGAGAG 59.407 57.143 5.63 0.00 43.69 3.20
962 1010 1.206132 ACGCTTCGAGAGAGAGAGAGA 59.794 52.381 5.63 0.00 43.69 3.10
963 1011 1.860950 CGCTTCGAGAGAGAGAGAGAG 59.139 57.143 0.00 0.00 43.69 3.20
964 1012 2.481276 CGCTTCGAGAGAGAGAGAGAGA 60.481 54.545 0.00 0.00 43.69 3.10
965 1013 3.126831 GCTTCGAGAGAGAGAGAGAGAG 58.873 54.545 0.00 0.00 43.69 3.20
966 1014 3.181475 GCTTCGAGAGAGAGAGAGAGAGA 60.181 52.174 0.00 0.00 43.69 3.10
967 1015 4.615949 CTTCGAGAGAGAGAGAGAGAGAG 58.384 52.174 0.00 0.00 43.69 3.20
968 1016 3.898482 TCGAGAGAGAGAGAGAGAGAGA 58.102 50.000 0.00 0.00 34.84 3.10
969 1017 3.885901 TCGAGAGAGAGAGAGAGAGAGAG 59.114 52.174 0.00 0.00 34.84 3.20
970 1018 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
971 1019 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
972 1020 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
973 1021 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
974 1022 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
975 1023 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
976 1024 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
995 1043 4.540099 AGAGAGAGAGAGAGAAGGAAGGAA 59.460 45.833 0.00 0.00 0.00 3.36
1111 1186 1.878656 GAGTGTCCCGTGCTAGCAGT 61.879 60.000 20.03 0.00 0.00 4.40
1126 1201 2.798976 GCAGTAGGCTCTCATCTGAG 57.201 55.000 0.00 0.56 43.36 3.35
1127 1202 1.340889 GCAGTAGGCTCTCATCTGAGG 59.659 57.143 7.33 0.30 42.30 3.86
1129 1204 2.622942 CAGTAGGCTCTCATCTGAGGAC 59.377 54.545 7.33 1.10 42.30 3.85
1130 1205 1.606668 GTAGGCTCTCATCTGAGGACG 59.393 57.143 7.33 0.00 42.30 4.79
1131 1206 0.754957 AGGCTCTCATCTGAGGACGG 60.755 60.000 7.33 0.00 42.30 4.79
1135 1210 2.746803 GCTCTCATCTGAGGACGGACTA 60.747 54.545 7.33 0.00 42.30 2.59
1147 1233 1.221840 CGGACTATGCACTGGGCTT 59.778 57.895 2.50 0.00 45.15 4.35
1165 1275 2.159462 GCTTGTGCCTAATTGACTGCTC 60.159 50.000 0.00 0.00 0.00 4.26
1166 1276 1.725641 TGTGCCTAATTGACTGCTCG 58.274 50.000 0.00 0.00 0.00 5.03
1167 1277 1.001974 TGTGCCTAATTGACTGCTCGT 59.998 47.619 0.00 0.00 0.00 4.18
1168 1278 1.394917 GTGCCTAATTGACTGCTCGTG 59.605 52.381 0.00 0.00 0.00 4.35
1169 1279 0.375106 GCCTAATTGACTGCTCGTGC 59.625 55.000 1.71 1.71 40.20 5.34
1170 1280 2.009042 GCCTAATTGACTGCTCGTGCT 61.009 52.381 11.19 0.00 40.48 4.40
1171 1281 1.662629 CCTAATTGACTGCTCGTGCTG 59.337 52.381 13.82 13.82 42.70 4.41
1172 1282 1.061711 CTAATTGACTGCTCGTGCTGC 59.938 52.381 15.09 9.29 41.07 5.25
1282 1392 2.188817 GGGTCATCACCAAGTAGGACT 58.811 52.381 0.00 0.00 45.94 3.85
1283 1393 2.093447 GGGTCATCACCAAGTAGGACTG 60.093 54.545 0.00 0.00 45.94 3.51
1284 1394 2.622436 GTCATCACCAAGTAGGACTGC 58.378 52.381 0.00 0.00 41.22 4.40
1285 1395 2.028112 GTCATCACCAAGTAGGACTGCA 60.028 50.000 0.00 0.00 41.22 4.41
1332 1446 1.517242 GCTAGGTATGCATGCACCTC 58.483 55.000 27.92 18.37 44.17 3.85
1350 1484 0.768622 TCTGTCATGTTTCCCGGGTT 59.231 50.000 22.86 0.00 0.00 4.11
1399 1533 8.220434 CCGTAGAATTTACAAAGGCAATTTTTG 58.780 33.333 0.54 0.54 40.48 2.44
1425 1571 2.288961 ACAAATACAGTCCGCCGTAG 57.711 50.000 0.00 0.00 0.00 3.51
1431 1605 0.524862 ACAGTCCGCCGTAGTAACAG 59.475 55.000 0.00 0.00 0.00 3.16
1452 1626 2.797087 GCACAAAATGATGCATCCTCCG 60.797 50.000 23.67 10.83 41.65 4.63
1467 1642 1.804151 CCTCCGAGCAAACGAATTTCA 59.196 47.619 0.00 0.00 35.09 2.69
1472 1647 3.179599 CCGAGCAAACGAATTTCACAAAC 59.820 43.478 0.00 0.00 35.09 2.93
1477 1652 4.031878 GCAAACGAATTTCACAAACCGAAA 59.968 37.500 0.00 0.00 36.83 3.46
1484 1659 6.140737 CGAATTTCACAAACCGAAAAAGAGAG 59.859 38.462 0.00 0.00 36.06 3.20
1614 1800 2.224606 TGCTCTGCTTCTTCTTTGTGG 58.775 47.619 0.00 0.00 0.00 4.17
1675 1861 1.670087 CCGTTTGTCTGAGATGCGAGT 60.670 52.381 0.00 0.00 0.00 4.18
1677 1863 1.651138 GTTTGTCTGAGATGCGAGTCG 59.349 52.381 8.54 8.54 0.00 4.18
1687 1873 3.554692 GCGAGTCGCGGTTCATGG 61.555 66.667 23.39 0.00 44.55 3.66
1688 1874 2.126071 CGAGTCGCGGTTCATGGT 60.126 61.111 6.13 0.00 36.03 3.55
1689 1875 2.444624 CGAGTCGCGGTTCATGGTG 61.445 63.158 6.13 0.00 36.03 4.17
1690 1876 2.740714 GAGTCGCGGTTCATGGTGC 61.741 63.158 6.13 0.00 0.00 5.01
1691 1877 2.742372 GTCGCGGTTCATGGTGCT 60.742 61.111 6.13 0.00 0.00 4.40
1692 1878 2.741985 TCGCGGTTCATGGTGCTG 60.742 61.111 6.13 0.00 0.00 4.41
1693 1879 4.465512 CGCGGTTCATGGTGCTGC 62.466 66.667 0.00 0.00 0.00 5.25
1736 1930 5.611796 TGATGCTGTTGTACATCTGTTTC 57.388 39.130 0.00 2.97 42.57 2.78
1741 1935 5.356751 TGCTGTTGTACATCTGTTTCTTGTT 59.643 36.000 0.00 0.00 0.00 2.83
1767 1961 3.324556 GCTTGATGATTAGCCTCCTCTCT 59.675 47.826 0.00 0.00 0.00 3.10
1768 1962 4.561326 GCTTGATGATTAGCCTCCTCTCTC 60.561 50.000 0.00 0.00 0.00 3.20
1769 1963 3.153130 TGATGATTAGCCTCCTCTCTCG 58.847 50.000 0.00 0.00 0.00 4.04
1770 1964 2.738587 TGATTAGCCTCCTCTCTCGT 57.261 50.000 0.00 0.00 0.00 4.18
1771 1965 2.577700 TGATTAGCCTCCTCTCTCGTC 58.422 52.381 0.00 0.00 0.00 4.20
1772 1966 2.092375 TGATTAGCCTCCTCTCTCGTCA 60.092 50.000 0.00 0.00 0.00 4.35
1773 1967 2.045561 TTAGCCTCCTCTCTCGTCAG 57.954 55.000 0.00 0.00 0.00 3.51
1774 1968 0.913205 TAGCCTCCTCTCTCGTCAGT 59.087 55.000 0.00 0.00 0.00 3.41
1819 2022 2.217750 TCCATCCAGTTGTGTTGTTCG 58.782 47.619 0.00 0.00 0.00 3.95
1824 2027 0.303493 CAGTTGTGTTGTTCGTCCGG 59.697 55.000 0.00 0.00 0.00 5.14
1897 2104 8.782339 AATCAATTGATTGGTGGAGAAATTTC 57.218 30.769 28.57 10.33 42.66 2.17
1929 2136 2.050442 CGTTCCTTGCGCAAACCC 60.050 61.111 25.01 11.04 0.00 4.11
1931 2138 2.197324 TTCCTTGCGCAAACCCCT 59.803 55.556 25.01 0.00 0.00 4.79
1932 2139 1.456705 TTCCTTGCGCAAACCCCTT 60.457 52.632 25.01 0.00 0.00 3.95
1933 2140 1.045911 TTCCTTGCGCAAACCCCTTT 61.046 50.000 25.01 0.00 0.00 3.11
1934 2141 0.178987 TCCTTGCGCAAACCCCTTTA 60.179 50.000 25.01 0.00 0.00 1.85
1935 2142 0.894835 CCTTGCGCAAACCCCTTTAT 59.105 50.000 25.01 0.00 0.00 1.40
1936 2143 1.404047 CCTTGCGCAAACCCCTTTATG 60.404 52.381 25.01 7.98 0.00 1.90
1937 2144 1.272212 CTTGCGCAAACCCCTTTATGT 59.728 47.619 25.01 0.00 0.00 2.29
1948 2155 2.949644 CCCCTTTATGTTTCCATCCGAC 59.050 50.000 0.00 0.00 32.29 4.79
1955 2162 2.226330 TGTTTCCATCCGACTGGTTTG 58.774 47.619 3.56 0.00 37.57 2.93
1958 2165 0.323629 TCCATCCGACTGGTTTGGTC 59.676 55.000 3.56 0.00 39.31 4.02
1959 2166 0.324943 CCATCCGACTGGTTTGGTCT 59.675 55.000 0.00 0.00 35.90 3.85
1980 2187 3.766691 GGCGAGTTCCCCGTGCTA 61.767 66.667 0.00 0.00 0.00 3.49
1981 2188 2.202756 GCGAGTTCCCCGTGCTAG 60.203 66.667 0.00 0.00 0.00 3.42
1985 2192 2.820037 GTTCCCCGTGCTAGCTGC 60.820 66.667 17.23 8.00 43.25 5.25
1998 2205 3.903783 GCTGCAGCGGTGGATAAA 58.096 55.556 25.23 0.00 0.00 1.40
2009 2216 4.764823 AGCGGTGGATAAATTTCAAGTTCA 59.235 37.500 0.00 0.00 0.00 3.18
2010 2217 5.242838 AGCGGTGGATAAATTTCAAGTTCAA 59.757 36.000 0.00 0.00 0.00 2.69
2026 2240 2.004583 TCAAACGGATGTGACGGATC 57.995 50.000 0.00 0.00 35.23 3.36
2035 2249 0.970640 TGTGACGGATCGGAGGAAAA 59.029 50.000 7.35 0.00 0.00 2.29
2123 2337 1.476833 GGCCGTCTCTCTCATCTCTCT 60.477 57.143 0.00 0.00 0.00 3.10
2179 2393 6.359480 GCATGAGCTTTATAACTTAACCGT 57.641 37.500 0.00 0.00 37.91 4.83
2180 2394 6.192360 GCATGAGCTTTATAACTTAACCGTG 58.808 40.000 0.00 0.00 37.91 4.94
2181 2395 5.789710 TGAGCTTTATAACTTAACCGTGC 57.210 39.130 0.00 0.00 0.00 5.34
2182 2396 5.484715 TGAGCTTTATAACTTAACCGTGCT 58.515 37.500 0.00 0.00 0.00 4.40
2183 2397 5.350365 TGAGCTTTATAACTTAACCGTGCTG 59.650 40.000 0.00 0.00 0.00 4.41
2184 2398 4.634443 AGCTTTATAACTTAACCGTGCTGG 59.366 41.667 0.00 0.00 46.41 4.85
2185 2399 4.729746 GCTTTATAACTTAACCGTGCTGGC 60.730 45.833 0.00 0.00 43.94 4.85
2186 2400 2.781681 ATAACTTAACCGTGCTGGCT 57.218 45.000 0.00 0.00 43.94 4.75
2187 2401 2.554370 TAACTTAACCGTGCTGGCTT 57.446 45.000 0.00 0.00 43.94 4.35
2188 2402 2.554370 AACTTAACCGTGCTGGCTTA 57.446 45.000 0.00 0.00 43.94 3.09
2189 2403 2.781681 ACTTAACCGTGCTGGCTTAT 57.218 45.000 0.00 0.00 43.94 1.73
2190 2404 3.899052 ACTTAACCGTGCTGGCTTATA 57.101 42.857 0.00 0.00 43.94 0.98
2191 2405 4.417426 ACTTAACCGTGCTGGCTTATAT 57.583 40.909 0.00 0.00 43.94 0.86
2192 2406 4.377897 ACTTAACCGTGCTGGCTTATATC 58.622 43.478 0.00 0.00 43.94 1.63
2193 2407 4.141801 ACTTAACCGTGCTGGCTTATATCA 60.142 41.667 0.00 0.00 43.94 2.15
2194 2408 2.533266 ACCGTGCTGGCTTATATCAG 57.467 50.000 0.00 0.00 43.94 2.90
2205 2419 4.637483 GCTTATATCAGCCAAAGCACAA 57.363 40.909 0.00 0.00 43.00 3.33
2206 2420 4.997565 GCTTATATCAGCCAAAGCACAAA 58.002 39.130 0.00 0.00 43.00 2.83
2207 2421 4.800471 GCTTATATCAGCCAAAGCACAAAC 59.200 41.667 0.00 0.00 43.00 2.93
2208 2422 5.622007 GCTTATATCAGCCAAAGCACAAACA 60.622 40.000 0.00 0.00 43.00 2.83
2209 2423 2.806608 ATCAGCCAAAGCACAAACAG 57.193 45.000 0.00 0.00 43.56 3.16
2210 2424 0.102844 TCAGCCAAAGCACAAACAGC 59.897 50.000 0.00 0.00 43.56 4.40
2211 2425 0.877213 CAGCCAAAGCACAAACAGCC 60.877 55.000 0.00 0.00 43.56 4.85
2212 2426 1.143620 GCCAAAGCACAAACAGCCA 59.856 52.632 0.00 0.00 39.53 4.75
2213 2427 1.153597 GCCAAAGCACAAACAGCCAC 61.154 55.000 0.00 0.00 39.53 5.01
2214 2428 0.175302 CCAAAGCACAAACAGCCACA 59.825 50.000 0.00 0.00 0.00 4.17
2215 2429 1.563111 CAAAGCACAAACAGCCACAG 58.437 50.000 0.00 0.00 0.00 3.66
2216 2430 1.135024 CAAAGCACAAACAGCCACAGT 60.135 47.619 0.00 0.00 0.00 3.55
2217 2431 0.457035 AAGCACAAACAGCCACAGTG 59.543 50.000 0.00 0.00 0.00 3.66
2218 2432 1.066257 GCACAAACAGCCACAGTGG 59.934 57.895 16.16 16.16 41.55 4.00
2227 2441 2.759114 CCACAGTGGCTGGGACAT 59.241 61.111 6.67 0.00 36.97 3.06
2228 2442 1.377725 CCACAGTGGCTGGGACATC 60.378 63.158 6.67 0.00 36.97 3.06
2229 2443 1.376086 CACAGTGGCTGGGACATCA 59.624 57.895 0.00 0.00 36.97 3.07
2230 2444 0.675837 CACAGTGGCTGGGACATCAG 60.676 60.000 0.00 0.00 36.97 2.90
2231 2445 0.837691 ACAGTGGCTGGGACATCAGA 60.838 55.000 0.00 0.00 38.20 3.27
2232 2446 0.392193 CAGTGGCTGGGACATCAGAC 60.392 60.000 0.00 0.00 42.93 3.51
2233 2447 0.546267 AGTGGCTGGGACATCAGACT 60.546 55.000 0.00 0.00 43.04 3.24
2234 2448 0.107945 GTGGCTGGGACATCAGACTC 60.108 60.000 0.00 0.00 43.04 3.36
2235 2449 1.267574 TGGCTGGGACATCAGACTCC 61.268 60.000 0.00 0.00 43.04 3.85
2236 2450 1.524482 GCTGGGACATCAGACTCCC 59.476 63.158 7.81 7.81 46.01 4.30
2239 2453 2.998493 GGGACATCAGACTCCCACT 58.002 57.895 9.47 0.00 45.22 4.00
2240 2454 0.539051 GGGACATCAGACTCCCACTG 59.461 60.000 9.47 0.00 45.22 3.66
2241 2455 0.107945 GGACATCAGACTCCCACTGC 60.108 60.000 0.00 0.00 35.61 4.40
2242 2456 0.610174 GACATCAGACTCCCACTGCA 59.390 55.000 0.00 0.00 35.61 4.41
2243 2457 1.209019 GACATCAGACTCCCACTGCAT 59.791 52.381 0.00 0.00 35.61 3.96
2244 2458 2.432146 GACATCAGACTCCCACTGCATA 59.568 50.000 0.00 0.00 35.61 3.14
2245 2459 2.169352 ACATCAGACTCCCACTGCATAC 59.831 50.000 0.00 0.00 35.61 2.39
2246 2460 1.937191 TCAGACTCCCACTGCATACA 58.063 50.000 0.00 0.00 35.61 2.29
2256 2470 2.858622 CTGCATACAGTGGTGTGGG 58.141 57.895 0.00 0.00 39.22 4.61
2257 2471 0.036732 CTGCATACAGTGGTGTGGGT 59.963 55.000 0.00 0.00 39.22 4.51
2258 2472 0.476338 TGCATACAGTGGTGTGGGTT 59.524 50.000 0.00 0.00 37.52 4.11
2259 2473 0.881118 GCATACAGTGGTGTGGGTTG 59.119 55.000 0.00 0.00 37.52 3.77
2260 2474 0.881118 CATACAGTGGTGTGGGTTGC 59.119 55.000 0.00 0.00 37.52 4.17
2261 2475 0.476338 ATACAGTGGTGTGGGTTGCA 59.524 50.000 0.00 0.00 37.52 4.08
2262 2476 0.464735 TACAGTGGTGTGGGTTGCAC 60.465 55.000 0.00 0.00 37.52 4.57
2263 2477 1.752310 CAGTGGTGTGGGTTGCACA 60.752 57.895 0.00 0.00 38.51 4.57
2264 2478 1.108727 CAGTGGTGTGGGTTGCACAT 61.109 55.000 0.00 0.00 38.51 3.21
2265 2479 1.108727 AGTGGTGTGGGTTGCACATG 61.109 55.000 0.00 0.00 38.51 3.21
2266 2480 2.339712 GGTGTGGGTTGCACATGC 59.660 61.111 0.00 0.00 38.51 4.06
2267 2481 2.050168 GTGTGGGTTGCACATGCG 60.050 61.111 0.00 0.00 45.83 4.73
2268 2482 2.203266 TGTGGGTTGCACATGCGA 60.203 55.556 0.00 0.00 45.83 5.10
2274 2488 3.847621 TTGCACATGCGACCCAAA 58.152 50.000 0.00 0.00 45.83 3.28
2275 2489 1.361993 TTGCACATGCGACCCAAAC 59.638 52.632 0.00 0.00 45.83 2.93
2276 2490 1.106351 TTGCACATGCGACCCAAACT 61.106 50.000 0.00 0.00 45.83 2.66
2277 2491 0.250510 TGCACATGCGACCCAAACTA 60.251 50.000 0.00 0.00 45.83 2.24
2278 2492 0.447801 GCACATGCGACCCAAACTAG 59.552 55.000 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.746108 CACAATTCGTGGAACCGTG 57.254 52.632 1.45 0.00 42.34 4.94
24 25 6.183360 GCGAGGGATCGAGTATTTAACAAAAA 60.183 38.462 1.17 0.00 34.64 1.94
25 26 5.292589 GCGAGGGATCGAGTATTTAACAAAA 59.707 40.000 1.17 0.00 34.64 2.44
26 27 4.807304 GCGAGGGATCGAGTATTTAACAAA 59.193 41.667 1.17 0.00 34.64 2.83
27 28 4.142116 TGCGAGGGATCGAGTATTTAACAA 60.142 41.667 1.17 0.00 34.64 2.83
28 29 3.382227 TGCGAGGGATCGAGTATTTAACA 59.618 43.478 1.17 0.00 34.64 2.41
29 30 3.973657 TGCGAGGGATCGAGTATTTAAC 58.026 45.455 1.17 0.00 34.64 2.01
30 31 4.659111 TTGCGAGGGATCGAGTATTTAA 57.341 40.909 1.17 0.00 34.64 1.52
31 32 4.866508 ATTGCGAGGGATCGAGTATTTA 57.133 40.909 1.17 0.00 34.64 1.40
32 33 3.753294 ATTGCGAGGGATCGAGTATTT 57.247 42.857 1.17 0.00 34.64 1.40
33 34 4.557205 GTTATTGCGAGGGATCGAGTATT 58.443 43.478 1.17 0.00 34.64 1.89
34 35 3.366070 CGTTATTGCGAGGGATCGAGTAT 60.366 47.826 1.17 0.00 34.64 2.12
35 36 2.031420 CGTTATTGCGAGGGATCGAGTA 60.031 50.000 1.17 0.00 34.64 2.59
36 37 1.269102 CGTTATTGCGAGGGATCGAGT 60.269 52.381 1.17 0.00 34.64 4.18
37 38 1.409412 CGTTATTGCGAGGGATCGAG 58.591 55.000 1.17 0.00 34.64 4.04
38 39 0.596600 GCGTTATTGCGAGGGATCGA 60.597 55.000 1.17 0.00 34.64 3.59
39 40 1.853319 GCGTTATTGCGAGGGATCG 59.147 57.895 0.00 0.00 0.00 3.69
48 49 0.042100 GCTAAGCTCCGCGTTATTGC 60.042 55.000 4.92 1.44 0.00 3.56
49 50 1.571919 AGCTAAGCTCCGCGTTATTG 58.428 50.000 4.92 0.00 30.62 1.90
61 62 3.616379 GTGACAACTGAGATGAGCTAAGC 59.384 47.826 0.00 0.00 0.00 3.09
69 70 3.426859 GTGAGTTCGTGACAACTGAGATG 59.573 47.826 5.40 0.00 36.71 2.90
71 72 2.540973 CGTGAGTTCGTGACAACTGAGA 60.541 50.000 5.40 0.00 36.71 3.27
84 85 3.499048 TCTTGTAGCGAATCGTGAGTTC 58.501 45.455 4.07 0.00 0.00 3.01
85 86 3.570926 TCTTGTAGCGAATCGTGAGTT 57.429 42.857 4.07 0.00 0.00 3.01
86 87 3.570926 TTCTTGTAGCGAATCGTGAGT 57.429 42.857 4.07 0.00 0.00 3.41
88 89 4.168922 TCTTTCTTGTAGCGAATCGTGA 57.831 40.909 4.07 0.00 0.00 4.35
89 90 4.903638 TTCTTTCTTGTAGCGAATCGTG 57.096 40.909 4.07 0.00 0.00 4.35
90 91 5.232414 GCTATTCTTTCTTGTAGCGAATCGT 59.768 40.000 4.07 0.00 31.39 3.73
91 92 5.661357 GCTATTCTTTCTTGTAGCGAATCG 58.339 41.667 0.00 0.00 31.39 3.34
97 98 6.530534 TGTTAGACGCTATTCTTTCTTGTAGC 59.469 38.462 0.00 0.00 36.95 3.58
98 99 8.462143 TTGTTAGACGCTATTCTTTCTTGTAG 57.538 34.615 0.00 0.00 0.00 2.74
99 100 8.086522 ACTTGTTAGACGCTATTCTTTCTTGTA 58.913 33.333 0.00 0.00 0.00 2.41
100 101 6.929606 ACTTGTTAGACGCTATTCTTTCTTGT 59.070 34.615 0.00 0.00 0.00 3.16
101 102 7.230222 CACTTGTTAGACGCTATTCTTTCTTG 58.770 38.462 0.00 0.00 0.00 3.02
103 104 5.869888 CCACTTGTTAGACGCTATTCTTTCT 59.130 40.000 0.00 0.00 0.00 2.52
111 112 2.490903 GGAGACCACTTGTTAGACGCTA 59.509 50.000 0.00 0.00 0.00 4.26
112 113 1.272769 GGAGACCACTTGTTAGACGCT 59.727 52.381 0.00 0.00 0.00 5.07
134 135 2.361230 AGGCCGGGCTGCTAAAAC 60.361 61.111 32.33 0.00 0.00 2.43
136 137 4.467084 CGAGGCCGGGCTGCTAAA 62.467 66.667 38.01 0.00 0.00 1.85
153 154 0.379669 CGTCAATCATGCAAGAGGCC 59.620 55.000 0.00 0.00 43.89 5.19
155 156 1.938577 CTCCGTCAATCATGCAAGAGG 59.061 52.381 0.00 0.00 0.00 3.69
165 167 0.806492 GGTCCGAAGCTCCGTCAATC 60.806 60.000 0.00 0.00 0.00 2.67
171 173 1.521681 GGAATGGTCCGAAGCTCCG 60.522 63.158 0.00 0.00 33.05 4.63
172 174 4.542075 GGAATGGTCCGAAGCTCC 57.458 61.111 0.00 0.00 33.05 4.70
180 182 0.326927 TGTTTCCTCCGGAATGGTCC 59.673 55.000 5.23 0.00 41.71 4.46
189 191 1.750399 CCATGGCCTGTTTCCTCCG 60.750 63.158 3.32 0.00 0.00 4.63
195 197 1.739608 AAGGGGTCCATGGCCTGTTT 61.740 55.000 20.31 11.82 0.00 2.83
209 211 0.613260 TGCAGTAGCTGTACAAGGGG 59.387 55.000 0.00 0.00 42.74 4.79
210 212 1.276421 AGTGCAGTAGCTGTACAAGGG 59.724 52.381 16.99 0.00 46.68 3.95
211 213 2.751166 AGTGCAGTAGCTGTACAAGG 57.249 50.000 16.99 0.00 46.68 3.61
212 214 3.172050 CGTAGTGCAGTAGCTGTACAAG 58.828 50.000 16.99 6.34 46.68 3.16
213 215 2.555325 ACGTAGTGCAGTAGCTGTACAA 59.445 45.455 16.99 0.00 46.68 2.41
214 216 2.156917 ACGTAGTGCAGTAGCTGTACA 58.843 47.619 16.99 0.00 46.68 2.90
215 217 2.915738 ACGTAGTGCAGTAGCTGTAC 57.084 50.000 0.18 8.89 45.10 2.90
216 218 4.637091 TCATTACGTAGTGCAGTAGCTGTA 59.363 41.667 12.85 3.11 45.73 2.74
217 219 3.442625 TCATTACGTAGTGCAGTAGCTGT 59.557 43.478 12.85 4.07 45.73 4.40
218 220 3.791887 GTCATTACGTAGTGCAGTAGCTG 59.208 47.826 12.85 0.00 45.73 4.24
219 221 3.442625 TGTCATTACGTAGTGCAGTAGCT 59.557 43.478 12.85 0.00 45.73 3.32
220 222 3.766151 TGTCATTACGTAGTGCAGTAGC 58.234 45.455 12.85 0.00 45.73 3.58
221 223 5.578776 TCATGTCATTACGTAGTGCAGTAG 58.421 41.667 12.85 8.71 45.73 2.57
222 224 5.570234 TCATGTCATTACGTAGTGCAGTA 57.430 39.130 12.85 0.00 45.73 2.74
223 225 4.450082 TCATGTCATTACGTAGTGCAGT 57.550 40.909 12.85 0.00 45.73 4.40
224 226 4.147133 CGATCATGTCATTACGTAGTGCAG 59.853 45.833 12.85 8.54 45.73 4.41
225 227 4.041723 CGATCATGTCATTACGTAGTGCA 58.958 43.478 12.85 13.59 45.73 4.57
226 228 3.121328 GCGATCATGTCATTACGTAGTGC 60.121 47.826 12.85 8.88 45.73 4.40
227 229 4.041723 TGCGATCATGTCATTACGTAGTG 58.958 43.478 11.57 11.57 45.73 2.74
239 250 2.680312 AGTGCTTAGTGCGATCATGT 57.320 45.000 0.00 0.00 46.63 3.21
241 252 4.655762 TCTTAGTGCTTAGTGCGATCAT 57.344 40.909 0.00 0.00 46.63 2.45
242 253 4.082190 AGTTCTTAGTGCTTAGTGCGATCA 60.082 41.667 0.00 0.00 46.63 2.92
254 265 6.047231 ACGGGACATTATTAGTTCTTAGTGC 58.953 40.000 0.00 0.00 0.00 4.40
328 339 0.104487 ATCATGCCACAGAGCGAGAG 59.896 55.000 0.00 0.00 34.65 3.20
329 340 0.179092 CATCATGCCACAGAGCGAGA 60.179 55.000 0.00 0.00 34.65 4.04
330 341 0.179092 TCATCATGCCACAGAGCGAG 60.179 55.000 0.00 0.00 34.65 5.03
331 342 0.179092 CTCATCATGCCACAGAGCGA 60.179 55.000 0.00 0.00 34.65 4.93
332 343 1.158484 CCTCATCATGCCACAGAGCG 61.158 60.000 0.00 0.00 34.65 5.03
333 344 0.818445 CCCTCATCATGCCACAGAGC 60.818 60.000 0.00 0.00 0.00 4.09
360 371 2.646719 GTCTACCGGACACACGCA 59.353 61.111 9.46 0.00 43.94 5.24
418 430 3.833729 GGTAAACAACCCACCACCT 57.166 52.632 0.00 0.00 43.16 4.00
442 454 1.901464 GAAGCGGGAAACAAGGGCA 60.901 57.895 0.00 0.00 0.00 5.36
462 475 2.407090 GCCATGCACTTCCAAGAAAAC 58.593 47.619 0.00 0.00 0.00 2.43
463 476 1.000385 CGCCATGCACTTCCAAGAAAA 60.000 47.619 0.00 0.00 0.00 2.29
522 539 3.080319 ACTCGGTCACTCCTTGTAGTAC 58.920 50.000 0.00 0.00 0.00 2.73
523 540 3.079578 CACTCGGTCACTCCTTGTAGTA 58.920 50.000 0.00 0.00 0.00 1.82
524 541 1.887198 CACTCGGTCACTCCTTGTAGT 59.113 52.381 0.00 0.00 0.00 2.73
525 542 2.160205 TCACTCGGTCACTCCTTGTAG 58.840 52.381 0.00 0.00 0.00 2.74
526 543 2.160205 CTCACTCGGTCACTCCTTGTA 58.840 52.381 0.00 0.00 0.00 2.41
527 544 0.962489 CTCACTCGGTCACTCCTTGT 59.038 55.000 0.00 0.00 0.00 3.16
528 545 0.962489 ACTCACTCGGTCACTCCTTG 59.038 55.000 0.00 0.00 0.00 3.61
529 546 1.249407 GACTCACTCGGTCACTCCTT 58.751 55.000 0.00 0.00 34.23 3.36
530 547 0.609681 GGACTCACTCGGTCACTCCT 60.610 60.000 0.00 0.00 35.61 3.69
531 548 0.894184 TGGACTCACTCGGTCACTCC 60.894 60.000 0.00 0.00 35.61 3.85
533 550 0.110678 TCTGGACTCACTCGGTCACT 59.889 55.000 0.00 0.00 35.61 3.41
534 551 1.178276 ATCTGGACTCACTCGGTCAC 58.822 55.000 0.00 0.00 35.61 3.67
535 552 2.753452 GTTATCTGGACTCACTCGGTCA 59.247 50.000 0.00 0.00 35.61 4.02
536 553 2.099427 GGTTATCTGGACTCACTCGGTC 59.901 54.545 0.00 0.00 0.00 4.79
537 554 2.100989 GGTTATCTGGACTCACTCGGT 58.899 52.381 0.00 0.00 0.00 4.69
538 555 2.379972 AGGTTATCTGGACTCACTCGG 58.620 52.381 0.00 0.00 0.00 4.63
539 556 3.444034 TGAAGGTTATCTGGACTCACTCG 59.556 47.826 0.00 0.00 0.00 4.18
543 560 3.576982 ACGTTGAAGGTTATCTGGACTCA 59.423 43.478 0.00 0.00 0.00 3.41
850 898 4.088762 GCGGTGGTGTGTGATGCG 62.089 66.667 0.00 0.00 0.00 4.73
892 940 0.944311 GTGAACAAGGAGCGCGAGAA 60.944 55.000 12.10 0.00 0.00 2.87
920 968 0.833409 AAGGGAAAGCCAAGGCAAGG 60.833 55.000 14.40 0.00 44.88 3.61
921 969 0.605083 GAAGGGAAAGCCAAGGCAAG 59.395 55.000 14.40 0.00 44.88 4.01
922 970 1.178534 CGAAGGGAAAGCCAAGGCAA 61.179 55.000 14.40 0.00 44.88 4.52
923 971 1.603455 CGAAGGGAAAGCCAAGGCA 60.603 57.895 14.40 0.00 44.88 4.75
924 972 1.303317 TCGAAGGGAAAGCCAAGGC 60.303 57.895 2.02 2.02 42.33 4.35
959 1007 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
960 1008 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
961 1009 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
962 1010 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
963 1011 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
964 1012 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
965 1013 5.221422 CCTTCTCTCTCTCTCTCTCTCTCTC 60.221 52.000 0.00 0.00 0.00 3.20
966 1014 4.653341 CCTTCTCTCTCTCTCTCTCTCTCT 59.347 50.000 0.00 0.00 0.00 3.10
967 1015 4.651503 TCCTTCTCTCTCTCTCTCTCTCTC 59.348 50.000 0.00 0.00 0.00 3.20
968 1016 4.624913 TCCTTCTCTCTCTCTCTCTCTCT 58.375 47.826 0.00 0.00 0.00 3.10
969 1017 5.359194 TTCCTTCTCTCTCTCTCTCTCTC 57.641 47.826 0.00 0.00 0.00 3.20
970 1018 4.164988 CCTTCCTTCTCTCTCTCTCTCTCT 59.835 50.000 0.00 0.00 0.00 3.10
971 1019 4.164221 TCCTTCCTTCTCTCTCTCTCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
972 1020 4.111577 TCCTTCCTTCTCTCTCTCTCTCT 58.888 47.826 0.00 0.00 0.00 3.10
973 1021 4.503714 TCCTTCCTTCTCTCTCTCTCTC 57.496 50.000 0.00 0.00 0.00 3.20
974 1022 4.540099 TCTTCCTTCCTTCTCTCTCTCTCT 59.460 45.833 0.00 0.00 0.00 3.10
975 1023 4.855340 TCTTCCTTCCTTCTCTCTCTCTC 58.145 47.826 0.00 0.00 0.00 3.20
976 1024 4.946160 TCTTCCTTCCTTCTCTCTCTCT 57.054 45.455 0.00 0.00 0.00 3.10
995 1043 2.427245 CCCTCGTCCGCCATCTTCT 61.427 63.158 0.00 0.00 0.00 2.85
1111 1186 1.477740 CCGTCCTCAGATGAGAGCCTA 60.478 57.143 11.44 0.00 44.74 3.93
1124 1199 0.103208 CCAGTGCATAGTCCGTCCTC 59.897 60.000 0.00 0.00 0.00 3.71
1126 1201 1.144057 CCCAGTGCATAGTCCGTCC 59.856 63.158 0.00 0.00 0.00 4.79
1127 1202 1.521681 GCCCAGTGCATAGTCCGTC 60.522 63.158 0.00 0.00 40.77 4.79
1129 1204 1.091771 CAAGCCCAGTGCATAGTCCG 61.092 60.000 0.00 0.00 44.83 4.79
1130 1205 0.035056 ACAAGCCCAGTGCATAGTCC 60.035 55.000 0.00 0.00 44.83 3.85
1131 1206 1.089920 CACAAGCCCAGTGCATAGTC 58.910 55.000 0.00 0.00 44.83 2.59
1147 1233 1.001974 ACGAGCAGTCAATTAGGCACA 59.998 47.619 0.00 0.00 0.00 4.57
1151 1237 1.662629 CAGCACGAGCAGTCAATTAGG 59.337 52.381 7.77 0.00 45.49 2.69
1152 1238 1.061711 GCAGCACGAGCAGTCAATTAG 59.938 52.381 7.77 0.00 45.49 1.73
1165 1275 4.374702 GTTCAGCACCGCAGCACG 62.375 66.667 0.00 0.00 43.15 5.34
1166 1276 4.374702 CGTTCAGCACCGCAGCAC 62.375 66.667 0.00 0.00 36.85 4.40
1167 1277 4.908687 ACGTTCAGCACCGCAGCA 62.909 61.111 0.00 0.00 36.85 4.41
1168 1278 4.374702 CACGTTCAGCACCGCAGC 62.375 66.667 0.00 0.00 0.00 5.25
1169 1279 4.374702 GCACGTTCAGCACCGCAG 62.375 66.667 0.00 0.00 0.00 5.18
1170 1280 4.908687 AGCACGTTCAGCACCGCA 62.909 61.111 0.00 0.00 0.00 5.69
1171 1281 2.662091 AAAAGCACGTTCAGCACCGC 62.662 55.000 0.00 0.00 0.00 5.68
1172 1282 0.929824 CAAAAGCACGTTCAGCACCG 60.930 55.000 0.00 0.00 0.00 4.94
1282 1392 4.119363 GAGCCCCTCCTGCATGCA 62.119 66.667 21.29 21.29 0.00 3.96
1283 1393 4.891037 GGAGCCCCTCCTGCATGC 62.891 72.222 11.82 11.82 46.41 4.06
1332 1446 1.616159 AAACCCGGGAAACATGACAG 58.384 50.000 32.02 0.00 0.00 3.51
1357 1491 0.251386 ACGGAGGACTCTGCTGAAGA 60.251 55.000 8.04 0.00 39.55 2.87
1358 1492 1.403679 CTACGGAGGACTCTGCTGAAG 59.596 57.143 8.04 0.00 39.55 3.02
1364 1498 5.578005 TGTAAATTCTACGGAGGACTCTG 57.422 43.478 6.61 6.61 41.63 3.35
1413 1559 0.801067 GCTGTTACTACGGCGGACTG 60.801 60.000 13.24 6.95 45.99 3.51
1425 1571 4.563976 GGATGCATCATTTTGTGCTGTTAC 59.436 41.667 27.25 1.07 41.78 2.50
1431 1605 2.797087 CGGAGGATGCATCATTTTGTGC 60.797 50.000 27.25 7.90 41.61 4.57
1452 1626 3.179599 CGGTTTGTGAAATTCGTTTGCTC 59.820 43.478 0.00 0.00 0.00 4.26
1467 1642 1.602377 CGCCTCTCTTTTTCGGTTTGT 59.398 47.619 0.00 0.00 0.00 2.83
1472 1647 2.399356 GGGCGCCTCTCTTTTTCGG 61.399 63.158 28.56 0.00 0.00 4.30
1477 1652 3.618780 CTGCAGGGCGCCTCTCTTT 62.619 63.158 28.56 2.19 41.33 2.52
1498 1674 2.846827 AGATGGAAGTAACAAGAGGGGG 59.153 50.000 0.00 0.00 0.00 5.40
1499 1675 3.777522 AGAGATGGAAGTAACAAGAGGGG 59.222 47.826 0.00 0.00 0.00 4.79
1500 1676 4.223923 ACAGAGATGGAAGTAACAAGAGGG 59.776 45.833 0.00 0.00 0.00 4.30
1582 1768 1.349026 AGCAGAGCAAGCAGAGGTAAA 59.651 47.619 0.00 0.00 0.00 2.01
1584 1770 0.979665 AAGCAGAGCAAGCAGAGGTA 59.020 50.000 0.00 0.00 0.00 3.08
1614 1800 1.451927 TTCGCCATGGATCACCTGC 60.452 57.895 18.40 0.00 37.04 4.85
1675 1861 2.741985 CAGCACCATGAACCGCGA 60.742 61.111 8.23 0.00 0.00 5.87
1677 1863 4.465512 CGCAGCACCATGAACCGC 62.466 66.667 0.00 0.00 0.00 5.68
1690 1876 4.742201 ACGTAGGCAGCACCGCAG 62.742 66.667 0.00 0.00 46.52 5.18
1693 1879 3.112075 CACACGTAGGCAGCACCG 61.112 66.667 0.00 0.00 46.52 4.94
1736 1930 4.337763 GCTAATCATCAAGCACGAACAAG 58.662 43.478 0.00 0.00 38.63 3.16
1741 1935 2.483714 GGAGGCTAATCATCAAGCACGA 60.484 50.000 0.00 0.00 40.61 4.35
1767 1961 0.391597 GGGAAGGTGACAACTGACGA 59.608 55.000 0.00 0.00 0.00 4.20
1768 1962 0.393077 AGGGAAGGTGACAACTGACG 59.607 55.000 0.00 0.00 0.00 4.35
1769 1963 2.104963 AGAAGGGAAGGTGACAACTGAC 59.895 50.000 0.00 0.00 0.00 3.51
1770 1964 2.368875 GAGAAGGGAAGGTGACAACTGA 59.631 50.000 0.00 0.00 0.00 3.41
1771 1965 2.551071 GGAGAAGGGAAGGTGACAACTG 60.551 54.545 0.00 0.00 0.00 3.16
1772 1966 1.700186 GGAGAAGGGAAGGTGACAACT 59.300 52.381 0.00 0.00 0.00 3.16
1773 1967 1.420138 TGGAGAAGGGAAGGTGACAAC 59.580 52.381 0.00 0.00 0.00 3.32
1774 1968 1.699634 CTGGAGAAGGGAAGGTGACAA 59.300 52.381 0.00 0.00 0.00 3.18
1819 2022 1.963190 GACGACGAAAATGCCCGGAC 61.963 60.000 0.73 0.00 0.00 4.79
1824 2027 0.802494 ACATGGACGACGAAAATGCC 59.198 50.000 0.00 0.00 0.00 4.40
1893 2100 1.439679 GCTCGAGAACAACGGGAAAT 58.560 50.000 18.75 0.00 32.58 2.17
1897 2104 1.615107 GAACGCTCGAGAACAACGGG 61.615 60.000 18.75 0.00 0.00 5.28
1935 2142 2.226330 CAAACCAGTCGGATGGAAACA 58.774 47.619 12.97 0.00 43.57 2.83
1936 2143 1.539827 CCAAACCAGTCGGATGGAAAC 59.460 52.381 12.97 0.00 43.57 2.78
1937 2144 1.144093 ACCAAACCAGTCGGATGGAAA 59.856 47.619 12.97 0.00 43.57 3.13
1948 2155 0.817634 TCGCCAACAGACCAAACCAG 60.818 55.000 0.00 0.00 0.00 4.00
1955 2162 1.671379 GGGAACTCGCCAACAGACC 60.671 63.158 0.00 0.00 0.00 3.85
1980 2187 0.107017 ATTTATCCACCGCTGCAGCT 60.107 50.000 34.22 18.32 39.32 4.24
1981 2188 0.740737 AATTTATCCACCGCTGCAGC 59.259 50.000 29.12 29.12 37.78 5.25
1985 2192 4.701956 ACTTGAAATTTATCCACCGCTG 57.298 40.909 0.00 0.00 0.00 5.18
1990 2197 7.142680 TCCGTTTGAACTTGAAATTTATCCAC 58.857 34.615 0.00 0.00 0.00 4.02
1998 2205 5.519722 GTCACATCCGTTTGAACTTGAAAT 58.480 37.500 0.00 0.00 0.00 2.17
2009 2216 0.459585 CCGATCCGTCACATCCGTTT 60.460 55.000 0.00 0.00 0.00 3.60
2010 2217 1.141019 CCGATCCGTCACATCCGTT 59.859 57.895 0.00 0.00 0.00 4.44
2026 2240 2.025418 CCGTCCGTGTTTTCCTCCG 61.025 63.158 0.00 0.00 0.00 4.63
2035 2249 3.622826 CTGGTTCCCCGTCCGTGT 61.623 66.667 0.00 0.00 0.00 4.49
2051 2265 1.293498 GACGCCCACTGTCATCACT 59.707 57.895 0.00 0.00 36.37 3.41
2056 2270 3.986006 GACGGACGCCCACTGTCA 61.986 66.667 0.00 0.00 41.57 3.58
2057 2271 3.986006 TGACGGACGCCCACTGTC 61.986 66.667 0.00 0.00 42.08 3.51
2058 2272 4.295119 GTGACGGACGCCCACTGT 62.295 66.667 9.53 0.00 0.00 3.55
2104 2318 1.967319 AGAGAGATGAGAGAGACGGC 58.033 55.000 0.00 0.00 0.00 5.68
2105 2319 4.336889 AGTAGAGAGATGAGAGAGACGG 57.663 50.000 0.00 0.00 0.00 4.79
2106 2320 7.962964 ATAAAGTAGAGAGATGAGAGAGACG 57.037 40.000 0.00 0.00 0.00 4.18
2156 2370 6.192360 CACGGTTAAGTTATAAAGCTCATGC 58.808 40.000 0.00 0.00 40.05 4.06
2157 2371 6.037172 AGCACGGTTAAGTTATAAAGCTCATG 59.963 38.462 0.00 0.00 0.00 3.07
2158 2372 6.037172 CAGCACGGTTAAGTTATAAAGCTCAT 59.963 38.462 0.00 0.00 0.00 2.90
2159 2373 5.350365 CAGCACGGTTAAGTTATAAAGCTCA 59.650 40.000 0.00 0.00 0.00 4.26
2160 2374 5.220605 CCAGCACGGTTAAGTTATAAAGCTC 60.221 44.000 0.00 0.00 0.00 4.09
2161 2375 4.634443 CCAGCACGGTTAAGTTATAAAGCT 59.366 41.667 0.00 0.00 0.00 3.74
2162 2376 4.729746 GCCAGCACGGTTAAGTTATAAAGC 60.730 45.833 0.00 0.00 36.97 3.51
2163 2377 4.634443 AGCCAGCACGGTTAAGTTATAAAG 59.366 41.667 0.00 0.00 36.97 1.85
2164 2378 4.581868 AGCCAGCACGGTTAAGTTATAAA 58.418 39.130 0.00 0.00 36.97 1.40
2165 2379 4.210724 AGCCAGCACGGTTAAGTTATAA 57.789 40.909 0.00 0.00 36.97 0.98
2166 2380 3.899052 AGCCAGCACGGTTAAGTTATA 57.101 42.857 0.00 0.00 36.97 0.98
2167 2381 2.781681 AGCCAGCACGGTTAAGTTAT 57.218 45.000 0.00 0.00 36.97 1.89
2168 2382 2.554370 AAGCCAGCACGGTTAAGTTA 57.446 45.000 0.00 0.00 36.97 2.24
2169 2383 2.554370 TAAGCCAGCACGGTTAAGTT 57.446 45.000 0.00 0.00 36.97 2.66
2170 2384 2.781681 ATAAGCCAGCACGGTTAAGT 57.218 45.000 0.00 0.00 36.97 2.24
2171 2385 4.377021 TGATATAAGCCAGCACGGTTAAG 58.623 43.478 0.00 0.00 36.97 1.85
2172 2386 4.377021 CTGATATAAGCCAGCACGGTTAA 58.623 43.478 0.00 0.00 36.97 2.01
2173 2387 3.990092 CTGATATAAGCCAGCACGGTTA 58.010 45.455 0.00 0.00 36.97 2.85
2174 2388 2.838736 CTGATATAAGCCAGCACGGTT 58.161 47.619 0.00 0.00 36.97 4.44
2175 2389 2.533266 CTGATATAAGCCAGCACGGT 57.467 50.000 0.00 0.00 36.97 4.83
2184 2398 4.637483 TTGTGCTTTGGCTGATATAAGC 57.363 40.909 3.08 3.08 42.46 3.09
2185 2399 5.953183 TGTTTGTGCTTTGGCTGATATAAG 58.047 37.500 0.00 0.00 39.59 1.73
2186 2400 5.622007 GCTGTTTGTGCTTTGGCTGATATAA 60.622 40.000 0.00 0.00 39.59 0.98
2187 2401 4.142403 GCTGTTTGTGCTTTGGCTGATATA 60.142 41.667 0.00 0.00 39.59 0.86
2188 2402 3.367703 GCTGTTTGTGCTTTGGCTGATAT 60.368 43.478 0.00 0.00 39.59 1.63
2189 2403 2.030007 GCTGTTTGTGCTTTGGCTGATA 60.030 45.455 0.00 0.00 39.59 2.15
2190 2404 1.269936 GCTGTTTGTGCTTTGGCTGAT 60.270 47.619 0.00 0.00 39.59 2.90
2191 2405 0.102844 GCTGTTTGTGCTTTGGCTGA 59.897 50.000 0.00 0.00 39.59 4.26
2192 2406 0.877213 GGCTGTTTGTGCTTTGGCTG 60.877 55.000 0.00 0.00 39.59 4.85
2193 2407 1.329171 TGGCTGTTTGTGCTTTGGCT 61.329 50.000 0.00 0.00 39.59 4.75
2194 2408 1.143620 TGGCTGTTTGTGCTTTGGC 59.856 52.632 0.00 0.00 39.26 4.52
2195 2409 0.175302 TGTGGCTGTTTGTGCTTTGG 59.825 50.000 0.00 0.00 0.00 3.28
2196 2410 1.135024 ACTGTGGCTGTTTGTGCTTTG 60.135 47.619 0.00 0.00 0.00 2.77
2197 2411 1.135024 CACTGTGGCTGTTTGTGCTTT 60.135 47.619 0.00 0.00 0.00 3.51
2198 2412 0.457035 CACTGTGGCTGTTTGTGCTT 59.543 50.000 0.00 0.00 0.00 3.91
2199 2413 1.386525 CCACTGTGGCTGTTTGTGCT 61.387 55.000 14.87 0.00 0.00 4.40
2200 2414 1.066257 CCACTGTGGCTGTTTGTGC 59.934 57.895 14.87 0.00 0.00 4.57
2210 2424 1.377725 GATGTCCCAGCCACTGTGG 60.378 63.158 22.46 22.46 41.55 4.17
2211 2425 0.675837 CTGATGTCCCAGCCACTGTG 60.676 60.000 0.00 0.00 0.00 3.66
2212 2426 0.837691 TCTGATGTCCCAGCCACTGT 60.838 55.000 0.00 0.00 34.28 3.55
2213 2427 0.392193 GTCTGATGTCCCAGCCACTG 60.392 60.000 0.00 0.00 34.28 3.66
2214 2428 0.546267 AGTCTGATGTCCCAGCCACT 60.546 55.000 0.00 0.00 34.28 4.00
2215 2429 0.107945 GAGTCTGATGTCCCAGCCAC 60.108 60.000 0.00 0.00 34.28 5.01
2216 2430 1.267574 GGAGTCTGATGTCCCAGCCA 61.268 60.000 0.00 0.00 34.28 4.75
2217 2431 1.524482 GGAGTCTGATGTCCCAGCC 59.476 63.158 0.00 0.00 34.28 4.85
2222 2436 0.107945 GCAGTGGGAGTCTGATGTCC 60.108 60.000 0.00 1.35 35.20 4.02
2223 2437 0.610174 TGCAGTGGGAGTCTGATGTC 59.390 55.000 0.00 0.00 35.20 3.06
2224 2438 1.283347 ATGCAGTGGGAGTCTGATGT 58.717 50.000 0.00 0.00 35.20 3.06
2225 2439 2.169144 TGTATGCAGTGGGAGTCTGATG 59.831 50.000 0.00 0.00 35.20 3.07
2226 2440 2.433604 CTGTATGCAGTGGGAGTCTGAT 59.566 50.000 2.12 0.00 37.92 2.90
2227 2441 1.827344 CTGTATGCAGTGGGAGTCTGA 59.173 52.381 2.12 0.00 37.92 3.27
2228 2442 2.306341 CTGTATGCAGTGGGAGTCTG 57.694 55.000 2.12 0.00 37.92 3.51
2239 2453 0.476338 AACCCACACCACTGTATGCA 59.524 50.000 0.00 0.00 0.00 3.96
2240 2454 0.881118 CAACCCACACCACTGTATGC 59.119 55.000 0.00 0.00 0.00 3.14
2241 2455 0.881118 GCAACCCACACCACTGTATG 59.119 55.000 0.00 0.00 0.00 2.39
2242 2456 0.476338 TGCAACCCACACCACTGTAT 59.524 50.000 0.00 0.00 0.00 2.29
2243 2457 0.464735 GTGCAACCCACACCACTGTA 60.465 55.000 0.00 0.00 44.06 2.74
2244 2458 1.752694 GTGCAACCCACACCACTGT 60.753 57.895 0.00 0.00 44.06 3.55
2245 2459 3.119193 GTGCAACCCACACCACTG 58.881 61.111 0.00 0.00 44.06 3.66
2252 2466 2.255252 GTCGCATGTGCAACCCAC 59.745 61.111 0.00 0.00 44.90 4.61
2253 2467 2.983030 GGTCGCATGTGCAACCCA 60.983 61.111 3.71 0.00 42.14 4.51
2256 2470 0.939106 GTTTGGGTCGCATGTGCAAC 60.939 55.000 0.00 0.00 42.21 4.17
2257 2471 1.106351 AGTTTGGGTCGCATGTGCAA 61.106 50.000 0.00 0.00 42.21 4.08
2258 2472 0.250510 TAGTTTGGGTCGCATGTGCA 60.251 50.000 0.00 0.00 42.21 4.57
2259 2473 0.447801 CTAGTTTGGGTCGCATGTGC 59.552 55.000 0.00 0.00 37.78 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.