Multiple sequence alignment - TraesCS2B01G176200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G176200 chr2B 100.000 2783 0 0 1 2783 151102581 151105363 0.000000e+00 5140.0
1 TraesCS2B01G176200 chr2B 92.991 214 14 1 1853 2065 151106909 151106696 7.480000e-81 311.0
2 TraesCS2B01G176200 chr2B 91.071 224 19 1 1853 2075 577444151 577443928 4.500000e-78 302.0
3 TraesCS2B01G176200 chr2D 92.579 1671 80 14 196 1852 99660913 99659273 0.000000e+00 2359.0
4 TraesCS2B01G176200 chr2D 95.045 222 10 1 1855 2075 154950818 154950597 5.700000e-92 348.0
5 TraesCS2B01G176200 chr2D 93.833 227 13 1 1850 2075 94714008 94714234 9.550000e-90 340.0
6 TraesCS2B01G176200 chr2D 92.704 233 16 1 1844 2075 488987164 488987396 4.440000e-88 335.0
7 TraesCS2B01G176200 chr2D 92.920 226 14 2 1851 2075 94716416 94716192 7.430000e-86 327.0
8 TraesCS2B01G176200 chr2D 90.789 228 13 4 1853 2075 488990059 488989835 5.830000e-77 298.0
9 TraesCS2B01G176200 chr2D 91.469 211 14 3 1 207 99661271 99661061 1.260000e-73 287.0
10 TraesCS2B01G176200 chr3D 81.046 1472 228 30 327 1783 565819740 565821175 0.000000e+00 1125.0
11 TraesCS2B01G176200 chr5B 85.091 550 45 21 2241 2783 22505174 22505693 6.830000e-146 527.0
12 TraesCS2B01G176200 chr5B 98.065 155 3 0 2093 2247 22504961 22505115 1.270000e-68 270.0
13 TraesCS2B01G176200 chr5D 84.964 552 44 21 2241 2783 30423320 30423841 8.830000e-145 523.0
14 TraesCS2B01G176200 chr5D 95.789 95 4 0 2153 2247 30423168 30423262 1.330000e-33 154.0
15 TraesCS2B01G176200 chr5D 96.970 33 1 0 1222 1254 366781106 366781074 3.870000e-04 56.5
16 TraesCS2B01G176200 chr4A 82.135 459 49 21 2235 2680 343782119 343782557 2.040000e-96 363.0
17 TraesCS2B01G176200 chr4A 77.662 385 74 9 345 720 554853390 554853771 1.000000e-54 224.0
18 TraesCS2B01G176200 chr7D 93.805 226 13 1 1851 2075 505333347 505333122 3.430000e-89 339.0
19 TraesCS2B01G176200 chr7D 92.708 96 7 0 341 436 579570480 579570575 3.740000e-29 139.0
20 TraesCS2B01G176200 chr1B 80.401 449 38 29 2241 2680 588502259 588502666 2.100000e-76 296.0
21 TraesCS2B01G176200 chr7B 80.178 449 39 28 2241 2680 246617119 246617526 9.750000e-75 291.0
22 TraesCS2B01G176200 chr7B 84.524 84 13 0 353 436 672549232 672549149 1.780000e-12 84.2
23 TraesCS2B01G176200 chr6B 90.045 221 20 2 1853 2072 20494411 20494192 4.540000e-73 285.0
24 TraesCS2B01G176200 chr2A 87.137 241 24 4 1602 1836 98880441 98880202 1.640000e-67 267.0
25 TraesCS2B01G176200 chr2A 92.727 55 2 1 2731 2783 491459968 491459914 8.260000e-11 78.7
26 TraesCS2B01G176200 chr4B 78.497 386 71 9 347 723 64775100 64774718 2.770000e-60 243.0
27 TraesCS2B01G176200 chr7A 75.610 369 71 12 341 699 671305702 671306061 6.170000e-37 165.0
28 TraesCS2B01G176200 chr3A 92.727 55 2 2 2731 2783 30181547 30181493 8.260000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G176200 chr2B 151102581 151105363 2782 False 5140.0 5140 100.0000 1 2783 1 chr2B.!!$F1 2782
1 TraesCS2B01G176200 chr2D 99659273 99661271 1998 True 1323.0 2359 92.0240 1 1852 2 chr2D.!!$R4 1851
2 TraesCS2B01G176200 chr3D 565819740 565821175 1435 False 1125.0 1125 81.0460 327 1783 1 chr3D.!!$F1 1456
3 TraesCS2B01G176200 chr5B 22504961 22505693 732 False 398.5 527 91.5780 2093 2783 2 chr5B.!!$F1 690
4 TraesCS2B01G176200 chr5D 30423168 30423841 673 False 338.5 523 90.3765 2153 2783 2 chr5D.!!$F1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 681 0.233074 CGATGAAATGCCGGACGATG 59.767 55.0 5.05 0.0 0.0 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 2261 0.033366 GCAATGGGTTGTGTGGGTTC 59.967 55.0 0.0 0.0 37.65 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 4.959596 TCGTAACTGACCATACAGAGTC 57.040 45.455 0.00 0.00 40.63 3.36
35 37 4.329392 TCGTAACTGACCATACAGAGTCA 58.671 43.478 0.00 0.00 40.61 3.41
39 41 5.745312 AACTGACCATACAGAGTCAATCA 57.255 39.130 0.00 0.00 42.19 2.57
59 61 4.067192 TCATTCGCATGGATATCACCAAG 58.933 43.478 4.83 0.00 43.47 3.61
66 68 5.351458 GCATGGATATCACCAAGGAAAAAC 58.649 41.667 4.83 0.00 43.47 2.43
77 79 5.234972 CACCAAGGAAAAACTCAATCTTTGC 59.765 40.000 0.00 0.00 31.14 3.68
144 148 3.868835 ACACGACGATTTTACAAAGTGC 58.131 40.909 0.00 0.00 32.22 4.40
151 155 8.497554 ACGACGATTTTACAAAGTGCTATTTTA 58.502 29.630 0.00 0.00 0.00 1.52
168 172 7.120432 TGCTATTTTAAAATTTGGGGCATGTTC 59.880 33.333 18.14 0.00 0.00 3.18
171 175 3.421919 AAAATTTGGGGCATGTTCAGG 57.578 42.857 0.00 0.00 0.00 3.86
173 177 1.856629 ATTTGGGGCATGTTCAGGAG 58.143 50.000 0.00 0.00 0.00 3.69
190 194 4.078336 TCAGGAGAGATGAGGGTCCTAAAT 60.078 45.833 0.00 0.00 37.32 1.40
220 384 2.745886 CGAAGCTTCGTAAACTGACG 57.254 50.000 34.97 11.21 45.09 4.35
222 386 1.126296 GAAGCTTCGTAAACTGACGGC 59.874 52.381 11.40 0.00 43.12 5.68
260 424 1.404035 GGCCAAGGCTACAAATTACGG 59.596 52.381 11.40 0.00 41.60 4.02
294 458 2.341846 AAACTGACCAACACATCCGT 57.658 45.000 0.00 0.00 0.00 4.69
316 480 2.456119 GCAACGATGGCTGGACTCG 61.456 63.158 0.00 0.00 38.34 4.18
512 679 1.520564 CCGATGAAATGCCGGACGA 60.521 57.895 5.05 0.00 45.58 4.20
513 680 0.880278 CCGATGAAATGCCGGACGAT 60.880 55.000 5.05 0.00 45.58 3.73
514 681 0.233074 CGATGAAATGCCGGACGATG 59.767 55.000 5.05 0.00 0.00 3.84
515 682 1.299541 GATGAAATGCCGGACGATGT 58.700 50.000 5.05 0.00 0.00 3.06
516 683 1.003545 GATGAAATGCCGGACGATGTG 60.004 52.381 5.05 0.00 0.00 3.21
517 684 1.024046 TGAAATGCCGGACGATGTGG 61.024 55.000 5.05 0.00 0.00 4.17
803 989 2.151202 AGGTTAGTCACAACAATGGCG 58.849 47.619 0.00 0.00 0.00 5.69
807 993 0.944386 AGTCACAACAATGGCGTCAC 59.056 50.000 0.00 0.00 0.00 3.67
809 995 0.943673 TCACAACAATGGCGTCACTG 59.056 50.000 0.00 0.00 0.00 3.66
822 1008 2.118683 CGTCACTGCAATTTTGTGTGG 58.881 47.619 14.01 0.00 36.33 4.17
824 1010 2.106566 TCACTGCAATTTTGTGTGGGT 58.893 42.857 14.01 0.00 36.33 4.51
825 1011 3.067461 GTCACTGCAATTTTGTGTGGGTA 59.933 43.478 14.01 0.03 36.33 3.69
826 1012 3.894427 TCACTGCAATTTTGTGTGGGTAT 59.106 39.130 14.01 0.00 36.33 2.73
827 1013 3.989167 CACTGCAATTTTGTGTGGGTATG 59.011 43.478 0.00 0.00 34.04 2.39
828 1014 3.006752 ACTGCAATTTTGTGTGGGTATGG 59.993 43.478 0.00 0.00 0.00 2.74
829 1015 2.301296 TGCAATTTTGTGTGGGTATGGG 59.699 45.455 0.00 0.00 0.00 4.00
830 1016 2.301583 GCAATTTTGTGTGGGTATGGGT 59.698 45.455 0.00 0.00 0.00 4.51
831 1017 3.244387 GCAATTTTGTGTGGGTATGGGTT 60.244 43.478 0.00 0.00 0.00 4.11
832 1018 4.565022 CAATTTTGTGTGGGTATGGGTTC 58.435 43.478 0.00 0.00 0.00 3.62
859 1045 8.804688 TCTTAACCAAAATTAATTTCCACACG 57.195 30.769 13.68 1.86 0.00 4.49
860 1046 8.630917 TCTTAACCAAAATTAATTTCCACACGA 58.369 29.630 13.68 3.91 0.00 4.35
863 1049 7.227049 ACCAAAATTAATTTCCACACGAGAT 57.773 32.000 13.68 0.00 0.00 2.75
864 1050 7.666623 ACCAAAATTAATTTCCACACGAGATT 58.333 30.769 13.68 0.00 0.00 2.40
865 1051 8.798402 ACCAAAATTAATTTCCACACGAGATTA 58.202 29.630 13.68 0.00 0.00 1.75
866 1052 9.289303 CCAAAATTAATTTCCACACGAGATTAG 57.711 33.333 13.68 0.00 31.25 1.73
869 1055 9.667107 AAATTAATTTCCACACGAGATTAGAGA 57.333 29.630 7.64 0.00 31.25 3.10
870 1056 9.667107 AATTAATTTCCACACGAGATTAGAGAA 57.333 29.630 0.00 0.00 31.25 2.87
871 1057 9.838339 ATTAATTTCCACACGAGATTAGAGAAT 57.162 29.630 0.00 0.00 31.25 2.40
872 1058 9.667107 TTAATTTCCACACGAGATTAGAGAATT 57.333 29.630 0.00 0.00 31.25 2.17
874 1060 7.979444 TTTCCACACGAGATTAGAGAATTTT 57.021 32.000 0.00 0.00 0.00 1.82
875 1061 7.979444 TTCCACACGAGATTAGAGAATTTTT 57.021 32.000 0.00 0.00 0.00 1.94
931 1117 4.314440 GTGACGGAGCTGCCACCA 62.314 66.667 0.00 0.00 35.94 4.17
1012 1199 1.303236 CTGGACATGGCCACCGAAA 60.303 57.895 19.12 0.00 33.52 3.46
1027 1214 1.017701 CGAAACTACAACGGGCTCCC 61.018 60.000 0.00 0.00 0.00 4.30
1332 1528 0.032952 CTTTCCTGTGGGTCGTTCGA 59.967 55.000 0.00 0.00 0.00 3.71
1333 1529 0.464870 TTTCCTGTGGGTCGTTCGAA 59.535 50.000 0.00 0.00 0.00 3.71
1335 1531 2.027625 CCTGTGGGTCGTTCGAAGC 61.028 63.158 0.00 0.00 0.00 3.86
1515 1717 3.434053 GAGTATCTGCGAGGGGGTA 57.566 57.895 0.00 0.00 0.00 3.69
1545 1747 1.021920 GCAGCCCTTTCTTCGGAGAC 61.022 60.000 0.00 0.00 34.32 3.36
1620 1822 1.276140 TGGGTAAGATGGAACGGGGG 61.276 60.000 0.00 0.00 0.00 5.40
1774 1976 9.734984 TCGATCAGTTGGTAGATCATATACTAA 57.265 33.333 0.00 0.00 40.45 2.24
1834 2036 3.139077 CCGGTATATTCTGGCAAAGACC 58.861 50.000 0.00 0.00 33.46 3.85
1835 2037 3.433031 CCGGTATATTCTGGCAAAGACCA 60.433 47.826 0.00 0.00 38.29 4.02
1852 2054 6.944234 AAGACCAGAGGTTTAAGAAACAAG 57.056 37.500 4.60 0.00 43.15 3.16
1853 2055 6.248569 AGACCAGAGGTTTAAGAAACAAGA 57.751 37.500 4.60 0.00 43.15 3.02
1854 2056 6.292150 AGACCAGAGGTTTAAGAAACAAGAG 58.708 40.000 4.60 0.00 43.15 2.85
1855 2057 5.377478 ACCAGAGGTTTAAGAAACAAGAGG 58.623 41.667 4.60 3.71 43.15 3.69
1856 2058 5.104067 ACCAGAGGTTTAAGAAACAAGAGGT 60.104 40.000 4.60 4.24 43.15 3.85
1857 2059 6.100714 ACCAGAGGTTTAAGAAACAAGAGGTA 59.899 38.462 4.60 0.00 43.15 3.08
1858 2060 6.996282 CCAGAGGTTTAAGAAACAAGAGGTAA 59.004 38.462 4.60 0.00 43.15 2.85
1859 2061 7.665974 CCAGAGGTTTAAGAAACAAGAGGTAAT 59.334 37.037 4.60 0.00 43.15 1.89
1860 2062 9.720769 CAGAGGTTTAAGAAACAAGAGGTAATA 57.279 33.333 4.60 0.00 43.15 0.98
1861 2063 9.945904 AGAGGTTTAAGAAACAAGAGGTAATAG 57.054 33.333 4.60 0.00 43.15 1.73
1862 2064 8.563123 AGGTTTAAGAAACAAGAGGTAATAGC 57.437 34.615 4.60 0.00 43.15 2.97
1863 2065 8.161425 AGGTTTAAGAAACAAGAGGTAATAGCA 58.839 33.333 4.60 0.00 43.15 3.49
1864 2066 8.235226 GGTTTAAGAAACAAGAGGTAATAGCAC 58.765 37.037 4.60 0.00 43.15 4.40
1865 2067 9.000486 GTTTAAGAAACAAGAGGTAATAGCACT 58.000 33.333 0.00 0.00 41.04 4.40
1866 2068 8.547967 TTAAGAAACAAGAGGTAATAGCACTG 57.452 34.615 0.00 0.00 0.00 3.66
1867 2069 4.938226 AGAAACAAGAGGTAATAGCACTGC 59.062 41.667 0.00 0.00 0.00 4.40
1868 2070 3.981071 ACAAGAGGTAATAGCACTGCA 57.019 42.857 3.30 0.00 0.00 4.41
1869 2071 3.866651 ACAAGAGGTAATAGCACTGCAG 58.133 45.455 13.48 13.48 0.00 4.41
1870 2072 3.515502 ACAAGAGGTAATAGCACTGCAGA 59.484 43.478 23.35 0.00 0.00 4.26
1871 2073 4.163078 ACAAGAGGTAATAGCACTGCAGAT 59.837 41.667 23.35 8.42 0.00 2.90
1872 2074 4.599047 AGAGGTAATAGCACTGCAGATC 57.401 45.455 23.35 11.29 0.00 2.75
1873 2075 3.323403 AGAGGTAATAGCACTGCAGATCC 59.677 47.826 23.35 7.82 0.00 3.36
1874 2076 2.370189 AGGTAATAGCACTGCAGATCCC 59.630 50.000 23.35 7.14 0.00 3.85
1875 2077 2.370189 GGTAATAGCACTGCAGATCCCT 59.630 50.000 23.35 12.42 0.00 4.20
1876 2078 3.578716 GGTAATAGCACTGCAGATCCCTA 59.421 47.826 23.35 14.14 0.00 3.53
1877 2079 4.040461 GGTAATAGCACTGCAGATCCCTAA 59.960 45.833 23.35 0.00 0.00 2.69
1878 2080 4.778213 AATAGCACTGCAGATCCCTAAA 57.222 40.909 23.35 0.00 0.00 1.85
1879 2081 2.409948 AGCACTGCAGATCCCTAAAC 57.590 50.000 23.35 0.00 0.00 2.01
1880 2082 1.912043 AGCACTGCAGATCCCTAAACT 59.088 47.619 23.35 0.78 0.00 2.66
1881 2083 2.307098 AGCACTGCAGATCCCTAAACTT 59.693 45.455 23.35 0.00 0.00 2.66
1882 2084 2.421424 GCACTGCAGATCCCTAAACTTG 59.579 50.000 23.35 4.33 0.00 3.16
1883 2085 3.679389 CACTGCAGATCCCTAAACTTGT 58.321 45.455 23.35 0.00 0.00 3.16
1884 2086 3.686726 CACTGCAGATCCCTAAACTTGTC 59.313 47.826 23.35 0.00 0.00 3.18
1885 2087 3.327757 ACTGCAGATCCCTAAACTTGTCA 59.672 43.478 23.35 0.00 0.00 3.58
1886 2088 4.018960 ACTGCAGATCCCTAAACTTGTCAT 60.019 41.667 23.35 0.00 0.00 3.06
1887 2089 4.264253 TGCAGATCCCTAAACTTGTCATG 58.736 43.478 0.00 0.00 0.00 3.07
1888 2090 3.629398 GCAGATCCCTAAACTTGTCATGG 59.371 47.826 0.00 0.00 0.00 3.66
1889 2091 4.626287 GCAGATCCCTAAACTTGTCATGGA 60.626 45.833 0.00 0.00 0.00 3.41
1890 2092 5.121811 CAGATCCCTAAACTTGTCATGGAG 58.878 45.833 0.00 0.00 0.00 3.86
1891 2093 4.164988 AGATCCCTAAACTTGTCATGGAGG 59.835 45.833 0.00 0.00 0.00 4.30
1892 2094 3.256704 TCCCTAAACTTGTCATGGAGGT 58.743 45.455 0.00 0.00 0.00 3.85
1893 2095 3.009033 TCCCTAAACTTGTCATGGAGGTG 59.991 47.826 0.00 0.00 0.00 4.00
1894 2096 3.009033 CCCTAAACTTGTCATGGAGGTGA 59.991 47.826 0.00 0.00 0.00 4.02
1895 2097 4.324563 CCCTAAACTTGTCATGGAGGTGAT 60.325 45.833 0.00 0.00 0.00 3.06
1896 2098 4.637534 CCTAAACTTGTCATGGAGGTGATG 59.362 45.833 0.00 0.00 0.00 3.07
1897 2099 2.795231 ACTTGTCATGGAGGTGATGG 57.205 50.000 0.00 0.00 0.00 3.51
1898 2100 1.988107 ACTTGTCATGGAGGTGATGGT 59.012 47.619 0.00 0.00 0.00 3.55
1899 2101 2.376518 ACTTGTCATGGAGGTGATGGTT 59.623 45.455 0.00 0.00 0.00 3.67
1900 2102 3.181429 ACTTGTCATGGAGGTGATGGTTT 60.181 43.478 0.00 0.00 0.00 3.27
1901 2103 2.794103 TGTCATGGAGGTGATGGTTTG 58.206 47.619 0.00 0.00 0.00 2.93
1902 2104 2.094675 GTCATGGAGGTGATGGTTTGG 58.905 52.381 0.00 0.00 0.00 3.28
1903 2105 1.710244 TCATGGAGGTGATGGTTTGGT 59.290 47.619 0.00 0.00 0.00 3.67
1904 2106 2.094675 CATGGAGGTGATGGTTTGGTC 58.905 52.381 0.00 0.00 0.00 4.02
1905 2107 0.404040 TGGAGGTGATGGTTTGGTCC 59.596 55.000 0.00 0.00 0.00 4.46
1906 2108 0.698818 GGAGGTGATGGTTTGGTCCT 59.301 55.000 0.00 0.00 0.00 3.85
1907 2109 1.340114 GGAGGTGATGGTTTGGTCCTC 60.340 57.143 0.00 0.00 40.21 3.71
1908 2110 1.351017 GAGGTGATGGTTTGGTCCTCA 59.649 52.381 0.00 0.00 40.51 3.86
1909 2111 1.780309 AGGTGATGGTTTGGTCCTCAA 59.220 47.619 0.00 0.00 0.00 3.02
1910 2112 2.176798 AGGTGATGGTTTGGTCCTCAAA 59.823 45.455 0.00 0.00 42.50 2.69
1920 2122 4.364415 TTGGTCCTCAAACTTGAAAACG 57.636 40.909 0.00 0.00 36.64 3.60
1921 2123 2.098443 TGGTCCTCAAACTTGAAAACGC 59.902 45.455 0.00 0.00 36.64 4.84
1922 2124 2.357952 GGTCCTCAAACTTGAAAACGCT 59.642 45.455 0.00 0.00 36.64 5.07
1923 2125 3.363178 GTCCTCAAACTTGAAAACGCTG 58.637 45.455 0.00 0.00 36.64 5.18
1924 2126 3.064820 GTCCTCAAACTTGAAAACGCTGA 59.935 43.478 0.00 0.00 36.64 4.26
1925 2127 3.882888 TCCTCAAACTTGAAAACGCTGAT 59.117 39.130 0.00 0.00 36.64 2.90
1926 2128 4.338118 TCCTCAAACTTGAAAACGCTGATT 59.662 37.500 0.00 0.00 36.64 2.57
1927 2129 5.529430 TCCTCAAACTTGAAAACGCTGATTA 59.471 36.000 0.00 0.00 36.64 1.75
1928 2130 6.206634 TCCTCAAACTTGAAAACGCTGATTAT 59.793 34.615 0.00 0.00 36.64 1.28
1929 2131 6.863126 CCTCAAACTTGAAAACGCTGATTATT 59.137 34.615 0.00 0.00 36.64 1.40
1930 2132 7.382218 CCTCAAACTTGAAAACGCTGATTATTT 59.618 33.333 0.00 0.00 36.64 1.40
1931 2133 8.060020 TCAAACTTGAAAACGCTGATTATTTG 57.940 30.769 0.00 0.00 33.55 2.32
1932 2134 7.168972 TCAAACTTGAAAACGCTGATTATTTGG 59.831 33.333 0.00 0.00 33.55 3.28
1933 2135 6.084326 ACTTGAAAACGCTGATTATTTGGT 57.916 33.333 0.00 0.00 0.00 3.67
1934 2136 6.149633 ACTTGAAAACGCTGATTATTTGGTC 58.850 36.000 0.00 0.00 0.00 4.02
1935 2137 5.054390 TGAAAACGCTGATTATTTGGTCC 57.946 39.130 0.00 0.00 0.00 4.46
1936 2138 4.764823 TGAAAACGCTGATTATTTGGTCCT 59.235 37.500 0.00 0.00 0.00 3.85
1937 2139 5.242838 TGAAAACGCTGATTATTTGGTCCTT 59.757 36.000 0.00 0.00 0.00 3.36
1938 2140 4.701956 AACGCTGATTATTTGGTCCTTG 57.298 40.909 0.00 0.00 0.00 3.61
1939 2141 3.950397 ACGCTGATTATTTGGTCCTTGA 58.050 40.909 0.00 0.00 0.00 3.02
1940 2142 4.331968 ACGCTGATTATTTGGTCCTTGAA 58.668 39.130 0.00 0.00 0.00 2.69
1941 2143 4.156008 ACGCTGATTATTTGGTCCTTGAAC 59.844 41.667 0.00 0.00 0.00 3.18
1942 2144 4.396166 CGCTGATTATTTGGTCCTTGAACT 59.604 41.667 0.00 0.00 0.00 3.01
1943 2145 5.106157 CGCTGATTATTTGGTCCTTGAACTT 60.106 40.000 0.00 0.00 0.00 2.66
1944 2146 6.095377 GCTGATTATTTGGTCCTTGAACTTG 58.905 40.000 0.00 0.00 0.00 3.16
1945 2147 6.294731 GCTGATTATTTGGTCCTTGAACTTGT 60.295 38.462 0.00 0.00 0.00 3.16
1946 2148 7.214467 TGATTATTTGGTCCTTGAACTTGTC 57.786 36.000 0.00 0.00 0.00 3.18
1947 2149 6.775142 TGATTATTTGGTCCTTGAACTTGTCA 59.225 34.615 0.00 0.00 0.00 3.58
1948 2150 7.451255 TGATTATTTGGTCCTTGAACTTGTCAT 59.549 33.333 0.00 0.00 35.70 3.06
1949 2151 4.916983 TTTGGTCCTTGAACTTGTCATG 57.083 40.909 0.00 0.00 35.70 3.07
1956 2158 3.893720 CTTGAACTTGTCATGGAAGTGC 58.106 45.455 10.65 9.68 35.70 4.40
1957 2159 2.929641 TGAACTTGTCATGGAAGTGCA 58.070 42.857 12.74 12.74 36.75 4.57
1958 2160 3.286353 TGAACTTGTCATGGAAGTGCAA 58.714 40.909 13.86 2.49 36.25 4.08
1959 2161 3.698539 TGAACTTGTCATGGAAGTGCAAA 59.301 39.130 13.86 0.00 36.25 3.68
1960 2162 4.341806 TGAACTTGTCATGGAAGTGCAAAT 59.658 37.500 13.86 0.10 36.25 2.32
1961 2163 4.942761 ACTTGTCATGGAAGTGCAAATT 57.057 36.364 9.47 0.00 32.30 1.82
1962 2164 5.280654 ACTTGTCATGGAAGTGCAAATTT 57.719 34.783 9.47 0.00 32.30 1.82
1963 2165 5.051816 ACTTGTCATGGAAGTGCAAATTTG 58.948 37.500 14.03 14.03 32.30 2.32
1964 2166 3.992643 TGTCATGGAAGTGCAAATTTGG 58.007 40.909 19.47 2.11 0.00 3.28
1965 2167 3.387374 TGTCATGGAAGTGCAAATTTGGT 59.613 39.130 19.47 0.00 0.00 3.67
1966 2168 3.989817 GTCATGGAAGTGCAAATTTGGTC 59.010 43.478 19.47 4.70 0.00 4.02
1967 2169 3.006752 TCATGGAAGTGCAAATTTGGTCC 59.993 43.478 19.47 3.99 0.00 4.46
1968 2170 2.676748 TGGAAGTGCAAATTTGGTCCT 58.323 42.857 19.47 1.66 0.00 3.85
1969 2171 3.037549 TGGAAGTGCAAATTTGGTCCTT 58.962 40.909 19.47 9.03 0.00 3.36
1970 2172 3.181467 TGGAAGTGCAAATTTGGTCCTTG 60.181 43.478 19.47 0.00 0.00 3.61
1971 2173 2.531522 AGTGCAAATTTGGTCCTTGC 57.468 45.000 19.47 4.73 44.54 4.01
1972 2174 1.139163 GTGCAAATTTGGTCCTTGCG 58.861 50.000 19.47 0.00 46.70 4.85
1973 2175 1.035923 TGCAAATTTGGTCCTTGCGA 58.964 45.000 19.47 0.00 46.70 5.10
1974 2176 1.410517 TGCAAATTTGGTCCTTGCGAA 59.589 42.857 19.47 0.00 46.70 4.70
1975 2177 2.036992 TGCAAATTTGGTCCTTGCGAAT 59.963 40.909 19.47 0.00 46.70 3.34
1976 2178 2.667969 GCAAATTTGGTCCTTGCGAATC 59.332 45.455 19.47 0.00 36.44 2.52
1977 2179 3.860378 GCAAATTTGGTCCTTGCGAATCA 60.860 43.478 19.47 0.00 36.44 2.57
1978 2180 3.575965 AATTTGGTCCTTGCGAATCAC 57.424 42.857 0.00 0.00 0.00 3.06
1979 2181 1.974265 TTTGGTCCTTGCGAATCACA 58.026 45.000 0.00 0.00 0.00 3.58
1980 2182 1.522668 TTGGTCCTTGCGAATCACAG 58.477 50.000 0.00 0.00 0.00 3.66
1981 2183 0.955428 TGGTCCTTGCGAATCACAGC 60.955 55.000 0.00 0.00 0.00 4.40
1982 2184 0.674895 GGTCCTTGCGAATCACAGCT 60.675 55.000 0.00 0.00 0.00 4.24
1983 2185 0.723981 GTCCTTGCGAATCACAGCTC 59.276 55.000 0.00 0.00 0.00 4.09
1984 2186 0.737367 TCCTTGCGAATCACAGCTCG 60.737 55.000 0.00 0.00 38.11 5.03
1988 2190 3.874873 CGAATCACAGCTCGCCAA 58.125 55.556 0.00 0.00 0.00 4.52
1989 2191 1.712081 CGAATCACAGCTCGCCAAG 59.288 57.895 0.00 0.00 0.00 3.61
1990 2192 1.016130 CGAATCACAGCTCGCCAAGT 61.016 55.000 0.00 0.00 0.00 3.16
1991 2193 0.445436 GAATCACAGCTCGCCAAGTG 59.555 55.000 0.00 0.00 0.00 3.16
1992 2194 0.957395 AATCACAGCTCGCCAAGTGG 60.957 55.000 0.34 0.00 38.53 4.00
1993 2195 1.830587 ATCACAGCTCGCCAAGTGGA 61.831 55.000 0.18 0.00 37.39 4.02
1994 2196 2.031516 CACAGCTCGCCAAGTGGAG 61.032 63.158 0.18 0.00 37.39 3.86
1998 2200 2.435586 CTCGCCAAGTGGAGCCAG 60.436 66.667 0.18 0.00 37.39 4.85
1999 2201 4.704833 TCGCCAAGTGGAGCCAGC 62.705 66.667 0.18 0.00 37.39 4.85
2000 2202 4.711949 CGCCAAGTGGAGCCAGCT 62.712 66.667 0.18 0.00 37.39 4.24
2001 2203 3.060615 GCCAAGTGGAGCCAGCTG 61.061 66.667 6.78 6.78 37.39 4.24
2002 2204 2.360852 CCAAGTGGAGCCAGCTGG 60.361 66.667 29.34 29.34 37.39 4.85
2003 2205 2.360852 CAAGTGGAGCCAGCTGGG 60.361 66.667 33.46 15.81 40.85 4.45
2027 2229 2.508439 CGGTCAGCGCCGTGTATT 60.508 61.111 2.29 0.00 46.11 1.89
2028 2230 2.098233 CGGTCAGCGCCGTGTATTT 61.098 57.895 2.29 0.00 46.11 1.40
2029 2231 1.632046 CGGTCAGCGCCGTGTATTTT 61.632 55.000 2.29 0.00 46.11 1.82
2030 2232 0.179200 GGTCAGCGCCGTGTATTTTG 60.179 55.000 2.29 0.00 0.00 2.44
2031 2233 0.793104 GTCAGCGCCGTGTATTTTGC 60.793 55.000 2.29 0.00 0.00 3.68
2032 2234 1.208870 CAGCGCCGTGTATTTTGCA 59.791 52.632 2.29 0.00 0.00 4.08
2033 2235 0.794229 CAGCGCCGTGTATTTTGCAG 60.794 55.000 2.29 0.00 0.00 4.41
2034 2236 1.209127 GCGCCGTGTATTTTGCAGT 59.791 52.632 0.00 0.00 0.00 4.40
2035 2237 0.386731 GCGCCGTGTATTTTGCAGTT 60.387 50.000 0.00 0.00 0.00 3.16
2036 2238 1.928595 GCGCCGTGTATTTTGCAGTTT 60.929 47.619 0.00 0.00 0.00 2.66
2037 2239 1.713404 CGCCGTGTATTTTGCAGTTTG 59.287 47.619 0.00 0.00 0.00 2.93
2038 2240 1.455408 GCCGTGTATTTTGCAGTTTGC 59.545 47.619 0.00 0.00 45.29 3.68
2039 2241 2.058057 CCGTGTATTTTGCAGTTTGCC 58.942 47.619 0.00 0.00 44.23 4.52
2040 2242 2.058057 CGTGTATTTTGCAGTTTGCCC 58.942 47.619 0.00 0.00 44.23 5.36
2041 2243 2.412870 GTGTATTTTGCAGTTTGCCCC 58.587 47.619 0.00 0.00 44.23 5.80
2042 2244 1.346068 TGTATTTTGCAGTTTGCCCCC 59.654 47.619 0.00 0.00 44.23 5.40
2043 2245 1.623311 GTATTTTGCAGTTTGCCCCCT 59.377 47.619 0.00 0.00 44.23 4.79
2044 2246 0.397564 ATTTTGCAGTTTGCCCCCTG 59.602 50.000 0.00 0.00 44.23 4.45
2048 2250 2.203684 CAGTTTGCCCCCTGCCTT 60.204 61.111 0.00 0.00 40.16 4.35
2049 2251 1.838396 CAGTTTGCCCCCTGCCTTT 60.838 57.895 0.00 0.00 40.16 3.11
2050 2252 0.541764 CAGTTTGCCCCCTGCCTTTA 60.542 55.000 0.00 0.00 40.16 1.85
2051 2253 0.251787 AGTTTGCCCCCTGCCTTTAG 60.252 55.000 0.00 0.00 40.16 1.85
2052 2254 1.609210 TTTGCCCCCTGCCTTTAGC 60.609 57.895 0.00 0.00 40.16 3.09
2053 2255 3.600410 TTGCCCCCTGCCTTTAGCC 62.600 63.158 0.00 0.00 42.71 3.93
2054 2256 4.841617 GCCCCCTGCCTTTAGCCC 62.842 72.222 0.00 0.00 42.71 5.19
2055 2257 3.023735 CCCCCTGCCTTTAGCCCT 61.024 66.667 0.00 0.00 42.71 5.19
2056 2258 1.696314 CCCCCTGCCTTTAGCCCTA 60.696 63.158 0.00 0.00 42.71 3.53
2057 2259 1.286305 CCCCCTGCCTTTAGCCCTAA 61.286 60.000 0.00 0.00 42.71 2.69
2058 2260 0.853530 CCCCTGCCTTTAGCCCTAAT 59.146 55.000 0.00 0.00 42.71 1.73
2059 2261 1.479389 CCCCTGCCTTTAGCCCTAATG 60.479 57.143 0.00 0.00 42.71 1.90
2060 2262 1.494721 CCCTGCCTTTAGCCCTAATGA 59.505 52.381 3.34 0.00 42.71 2.57
2061 2263 2.091885 CCCTGCCTTTAGCCCTAATGAA 60.092 50.000 3.34 0.00 42.71 2.57
2062 2264 2.952310 CCTGCCTTTAGCCCTAATGAAC 59.048 50.000 3.34 0.00 42.71 3.18
2063 2265 2.952310 CTGCCTTTAGCCCTAATGAACC 59.048 50.000 3.34 0.00 42.71 3.62
2064 2266 2.307768 GCCTTTAGCCCTAATGAACCC 58.692 52.381 3.34 0.00 34.35 4.11
2065 2267 2.357777 GCCTTTAGCCCTAATGAACCCA 60.358 50.000 3.34 0.00 34.35 4.51
2066 2268 3.288092 CCTTTAGCCCTAATGAACCCAC 58.712 50.000 3.34 0.00 0.00 4.61
2067 2269 3.308832 CCTTTAGCCCTAATGAACCCACA 60.309 47.826 3.34 0.00 0.00 4.17
2068 2270 3.359695 TTAGCCCTAATGAACCCACAC 57.640 47.619 0.00 0.00 0.00 3.82
2069 2271 1.072266 AGCCCTAATGAACCCACACA 58.928 50.000 0.00 0.00 0.00 3.72
2070 2272 1.427368 AGCCCTAATGAACCCACACAA 59.573 47.619 0.00 0.00 0.00 3.33
2071 2273 1.544246 GCCCTAATGAACCCACACAAC 59.456 52.381 0.00 0.00 0.00 3.32
2072 2274 2.167662 CCCTAATGAACCCACACAACC 58.832 52.381 0.00 0.00 0.00 3.77
2073 2275 2.167662 CCTAATGAACCCACACAACCC 58.832 52.381 0.00 0.00 0.00 4.11
2074 2276 2.489985 CCTAATGAACCCACACAACCCA 60.490 50.000 0.00 0.00 0.00 4.51
2075 2277 2.397044 AATGAACCCACACAACCCAT 57.603 45.000 0.00 0.00 0.00 4.00
2076 2278 2.397044 ATGAACCCACACAACCCATT 57.603 45.000 0.00 0.00 0.00 3.16
2077 2279 1.407936 TGAACCCACACAACCCATTG 58.592 50.000 0.00 0.00 41.98 2.82
2078 2280 0.033366 GAACCCACACAACCCATTGC 59.967 55.000 0.00 0.00 39.66 3.56
2079 2281 0.689080 AACCCACACAACCCATTGCA 60.689 50.000 0.00 0.00 39.66 4.08
2080 2282 0.689080 ACCCACACAACCCATTGCAA 60.689 50.000 0.00 0.00 39.66 4.08
2081 2283 0.467384 CCCACACAACCCATTGCAAA 59.533 50.000 1.71 0.00 39.66 3.68
2082 2284 1.072015 CCCACACAACCCATTGCAAAT 59.928 47.619 1.71 0.00 39.66 2.32
2083 2285 2.144730 CCACACAACCCATTGCAAATG 58.855 47.619 1.71 2.47 39.66 2.32
2084 2286 1.532007 CACACAACCCATTGCAAATGC 59.468 47.619 1.71 0.00 39.66 3.56
2120 2322 0.107456 ACCCTGACAGCTGACAAGTG 59.893 55.000 23.35 13.38 0.00 3.16
2235 2437 4.702131 AGGGAGATGTAATTTTGACAGCAC 59.298 41.667 0.00 0.00 35.66 4.40
2338 2605 2.114625 ACCAGCTGCTGCATGTGT 59.885 55.556 23.86 12.91 42.74 3.72
2390 2657 2.861462 GTGCCAACACAAAACTAGCA 57.139 45.000 0.00 0.00 46.61 3.49
2391 2658 3.369546 GTGCCAACACAAAACTAGCAT 57.630 42.857 0.00 0.00 46.61 3.79
2392 2659 3.716601 GTGCCAACACAAAACTAGCATT 58.283 40.909 0.00 0.00 46.61 3.56
2393 2660 3.490526 GTGCCAACACAAAACTAGCATTG 59.509 43.478 6.56 6.56 46.61 2.82
2394 2661 2.476241 GCCAACACAAAACTAGCATTGC 59.524 45.455 0.00 0.00 0.00 3.56
2395 2662 3.799917 GCCAACACAAAACTAGCATTGCT 60.800 43.478 16.63 16.63 43.41 3.91
2397 2664 4.917415 CCAACACAAAACTAGCATTGCTAC 59.083 41.667 14.33 0.00 40.44 3.58
2398 2665 5.278463 CCAACACAAAACTAGCATTGCTACT 60.278 40.000 14.33 3.25 40.44 2.57
2399 2666 6.208644 CAACACAAAACTAGCATTGCTACTT 58.791 36.000 14.33 9.18 40.44 2.24
2400 2667 6.002062 ACACAAAACTAGCATTGCTACTTC 57.998 37.500 14.33 0.00 40.44 3.01
2401 2668 5.048713 ACACAAAACTAGCATTGCTACTTCC 60.049 40.000 14.33 0.00 40.44 3.46
2402 2669 5.182001 CACAAAACTAGCATTGCTACTTCCT 59.818 40.000 14.33 1.66 40.44 3.36
2403 2670 5.182001 ACAAAACTAGCATTGCTACTTCCTG 59.818 40.000 14.33 13.48 40.44 3.86
2404 2671 4.559862 AACTAGCATTGCTACTTCCTGT 57.440 40.909 14.33 7.16 40.44 4.00
2407 2674 6.240549 ACTAGCATTGCTACTTCCTGTATT 57.759 37.500 14.33 0.00 40.44 1.89
2411 2678 5.587844 AGCATTGCTACTTCCTGTATTCAAG 59.412 40.000 10.00 0.00 36.99 3.02
2420 2687 9.388506 CTACTTCCTGTATTCAAGAATGTTGAT 57.611 33.333 5.59 0.00 32.50 2.57
2422 2689 9.739276 ACTTCCTGTATTCAAGAATGTTGATAA 57.261 29.630 5.59 0.00 32.50 1.75
2445 2712 7.986085 AATATGGTACTATCAATTCAGCACC 57.014 36.000 0.00 0.00 0.00 5.01
2446 2713 4.150897 TGGTACTATCAATTCAGCACCC 57.849 45.455 0.00 0.00 28.45 4.61
2457 2724 2.851263 TCAGCACCCGTAATCAACTT 57.149 45.000 0.00 0.00 0.00 2.66
2458 2725 3.134574 TCAGCACCCGTAATCAACTTT 57.865 42.857 0.00 0.00 0.00 2.66
2478 2745 6.458210 ACTTTAGCACAAATTAGCATTGCTT 58.542 32.000 17.71 0.00 40.66 3.91
2509 2776 5.156355 CACAAGTGCCTTCATACACAAATC 58.844 41.667 0.00 0.00 39.30 2.17
2519 2787 9.076596 GCCTTCATACACAAATCTAACAAAATC 57.923 33.333 0.00 0.00 0.00 2.17
2545 2813 3.951037 TCTTAACACAACACTGGCATTGT 59.049 39.130 4.45 4.45 39.63 2.71
2549 2817 1.761449 ACAACACTGGCATTGTGACA 58.239 45.000 11.48 0.00 37.64 3.58
2550 2818 2.098614 ACAACACTGGCATTGTGACAA 58.901 42.857 11.48 0.00 33.21 3.18
2552 2820 3.132646 ACAACACTGGCATTGTGACAAAT 59.867 39.130 11.48 0.00 33.21 2.32
2553 2821 3.374220 ACACTGGCATTGTGACAAATG 57.626 42.857 9.90 2.92 33.21 2.32
2554 2822 2.036217 ACACTGGCATTGTGACAAATGG 59.964 45.455 9.90 0.00 33.21 3.16
2555 2823 2.296752 CACTGGCATTGTGACAAATGGA 59.703 45.455 0.62 0.00 33.21 3.41
2557 2825 2.559668 CTGGCATTGTGACAAATGGAGT 59.440 45.455 0.62 0.00 33.21 3.85
2558 2826 3.758023 CTGGCATTGTGACAAATGGAGTA 59.242 43.478 0.62 0.00 33.21 2.59
2559 2827 4.343231 TGGCATTGTGACAAATGGAGTAT 58.657 39.130 0.62 0.00 37.89 2.12
2560 2828 4.771577 TGGCATTGTGACAAATGGAGTATT 59.228 37.500 0.62 0.00 37.89 1.89
2565 2834 7.485913 GCATTGTGACAAATGGAGTATTTACTG 59.514 37.037 0.62 0.00 36.87 2.74
2568 2837 9.733556 TTGTGACAAATGGAGTATTTACTGTAT 57.266 29.630 0.00 0.00 36.87 2.29
2640 2909 8.947055 ATCAACTTTAGCACAAACATTTCTTT 57.053 26.923 0.00 0.00 0.00 2.52
2641 2910 8.183830 TCAACTTTAGCACAAACATTTCTTTG 57.816 30.769 0.00 0.00 37.20 2.77
2653 2922 4.624015 ACATTTCTTTGTCACATGCAAGG 58.376 39.130 0.00 0.00 0.00 3.61
2669 2938 2.031333 GCAAGGATCAATGGAAGATCGC 60.031 50.000 0.00 0.00 42.16 4.58
2670 2939 2.160822 AGGATCAATGGAAGATCGCG 57.839 50.000 0.00 0.00 42.16 5.87
2727 2999 7.235935 TCCAAAGATGAAGAAGAAATTGCAT 57.764 32.000 0.00 0.00 0.00 3.96
2749 3021 1.207791 GAAGATGGCAGGAGAAGGGA 58.792 55.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 4.456566 TGGTGATATCCATGCGAATGATTG 59.543 41.667 4.44 0.00 31.96 2.67
35 37 4.654915 TGGTGATATCCATGCGAATGATT 58.345 39.130 4.44 0.00 31.96 2.57
39 41 3.072915 TCCTTGGTGATATCCATGCGAAT 59.927 43.478 0.00 0.00 37.33 3.34
144 148 8.558973 TGAACATGCCCCAAATTTTAAAATAG 57.441 30.769 13.68 9.50 0.00 1.73
151 155 2.978278 TCCTGAACATGCCCCAAATTTT 59.022 40.909 0.00 0.00 0.00 1.82
158 162 0.842635 ATCTCTCCTGAACATGCCCC 59.157 55.000 0.00 0.00 0.00 5.80
168 172 3.320610 TTAGGACCCTCATCTCTCCTG 57.679 52.381 0.00 0.00 34.78 3.86
171 175 5.878406 TTCATTTAGGACCCTCATCTCTC 57.122 43.478 0.00 0.00 0.00 3.20
173 177 7.445707 GGTAATTTCATTTAGGACCCTCATCTC 59.554 40.741 0.00 0.00 0.00 2.75
220 384 2.480073 CCATTGTCCATTTGATCGTGCC 60.480 50.000 0.00 0.00 0.00 5.01
222 386 2.480073 GGCCATTGTCCATTTGATCGTG 60.480 50.000 0.00 0.00 0.00 4.35
231 395 0.630673 TAGCCTTGGCCATTGTCCAT 59.369 50.000 6.09 0.00 32.92 3.41
235 399 2.008242 TTTGTAGCCTTGGCCATTGT 57.992 45.000 6.09 0.00 0.00 2.71
260 424 4.626172 GGTCAGTTTATCGAAGTTGGACTC 59.374 45.833 0.00 0.00 0.00 3.36
274 438 3.478857 ACGGATGTGTTGGTCAGTTTA 57.521 42.857 0.00 0.00 0.00 2.01
294 458 1.017177 GTCCAGCCATCGTTGCGTAA 61.017 55.000 0.00 0.00 0.00 3.18
337 501 2.988839 GCAGGGGGAACAGCAGGAT 61.989 63.158 0.00 0.00 0.00 3.24
421 585 0.321653 GTGGTGTGGAGGATGGTGAC 60.322 60.000 0.00 0.00 0.00 3.67
498 662 1.024046 CCACATCGTCCGGCATTTCA 61.024 55.000 0.00 0.00 0.00 2.69
564 744 2.363975 GCACCCCGACACCTCCATA 61.364 63.158 0.00 0.00 0.00 2.74
677 857 4.815108 TCGGCAGGCCTAGCTCGA 62.815 66.667 23.16 23.16 34.17 4.04
803 989 2.159114 ACCCACACAAAATTGCAGTGAC 60.159 45.455 16.31 0.00 38.81 3.67
807 993 3.587923 CCATACCCACACAAAATTGCAG 58.412 45.455 0.00 0.00 0.00 4.41
809 995 2.301583 ACCCATACCCACACAAAATTGC 59.698 45.455 0.00 0.00 0.00 3.56
874 1060 9.230122 TCATGCTCTGAAATGAAATACTACAAA 57.770 29.630 1.35 0.00 29.97 2.83
875 1061 8.791327 TCATGCTCTGAAATGAAATACTACAA 57.209 30.769 1.35 0.00 29.97 2.41
876 1062 8.668353 GTTCATGCTCTGAAATGAAATACTACA 58.332 33.333 13.85 0.00 45.27 2.74
877 1063 8.887717 AGTTCATGCTCTGAAATGAAATACTAC 58.112 33.333 13.85 5.24 45.27 2.73
928 1114 0.676151 GGTCCGAGACTCGTACTGGT 60.676 60.000 22.61 0.00 38.40 4.00
931 1117 0.324285 ACAGGTCCGAGACTCGTACT 59.676 55.000 22.61 14.28 38.40 2.73
1027 1214 1.488812 TGTGTTGATTAGGATCCCCGG 59.511 52.381 8.55 0.00 37.58 5.73
1036 1223 6.030379 GAGAGCTTCGAATGTGTTGATTAG 57.970 41.667 0.00 0.00 0.00 1.73
1134 1321 0.247460 CGATGGTGGAGAGCTTGTGA 59.753 55.000 0.00 0.00 0.00 3.58
1267 1463 0.232303 GCAACCTCGTTGAAGTCGTG 59.768 55.000 8.65 0.00 45.28 4.35
1335 1531 4.493747 GAACCGAGGACGAGGCCG 62.494 72.222 0.00 0.00 42.66 6.13
1350 1546 1.519246 CAGCTCTGCATCCTCGGAA 59.481 57.895 0.00 0.00 0.00 4.30
1515 1717 2.672996 GGGCTGCACAACATCGGT 60.673 61.111 0.50 0.00 0.00 4.69
1620 1822 0.379669 CAATGGCGTGCTCAATCTCC 59.620 55.000 0.00 0.00 0.00 3.71
1672 1874 2.343426 CCTTTGCCCTTTCCCTCGC 61.343 63.158 0.00 0.00 0.00 5.03
1686 1888 4.010349 CCGATTTGGTCTTAAGCTCCTTT 58.990 43.478 14.46 3.57 0.00 3.11
1774 1976 5.657302 ACCACCTCGAATAGTTTCATAGAGT 59.343 40.000 0.00 0.00 0.00 3.24
1814 2016 3.804036 TGGTCTTTGCCAGAATATACCG 58.196 45.455 0.00 0.00 33.97 4.02
1823 2025 9.541679 GTTTCTTAAACCTCTGGTCTTTGCCAG 62.542 44.444 5.81 5.81 44.41 4.85
1834 2036 8.622948 ATTACCTCTTGTTTCTTAAACCTCTG 57.377 34.615 0.41 0.00 40.67 3.35
1835 2037 9.945904 CTATTACCTCTTGTTTCTTAAACCTCT 57.054 33.333 0.41 0.00 40.67 3.69
1852 2054 3.556004 GGGATCTGCAGTGCTATTACCTC 60.556 52.174 17.60 3.62 0.00 3.85
1853 2055 2.370189 GGGATCTGCAGTGCTATTACCT 59.630 50.000 17.60 0.00 0.00 3.08
1854 2056 2.370189 AGGGATCTGCAGTGCTATTACC 59.630 50.000 17.60 12.93 0.00 2.85
1855 2057 3.760580 AGGGATCTGCAGTGCTATTAC 57.239 47.619 17.60 3.98 0.00 1.89
1856 2058 5.366768 AGTTTAGGGATCTGCAGTGCTATTA 59.633 40.000 17.60 0.00 0.00 0.98
1857 2059 4.164988 AGTTTAGGGATCTGCAGTGCTATT 59.835 41.667 17.60 0.00 0.00 1.73
1858 2060 3.713764 AGTTTAGGGATCTGCAGTGCTAT 59.286 43.478 17.60 9.93 0.00 2.97
1859 2061 3.107601 AGTTTAGGGATCTGCAGTGCTA 58.892 45.455 17.60 4.84 0.00 3.49
1860 2062 1.912043 AGTTTAGGGATCTGCAGTGCT 59.088 47.619 17.60 0.00 0.00 4.40
1861 2063 2.409948 AGTTTAGGGATCTGCAGTGC 57.590 50.000 14.67 8.58 0.00 4.40
1862 2064 3.679389 ACAAGTTTAGGGATCTGCAGTG 58.321 45.455 14.67 2.18 0.00 3.66
1863 2065 3.327757 TGACAAGTTTAGGGATCTGCAGT 59.672 43.478 14.67 0.42 0.00 4.40
1864 2066 3.942829 TGACAAGTTTAGGGATCTGCAG 58.057 45.455 7.63 7.63 0.00 4.41
1865 2067 4.264253 CATGACAAGTTTAGGGATCTGCA 58.736 43.478 0.00 0.00 0.00 4.41
1866 2068 3.629398 CCATGACAAGTTTAGGGATCTGC 59.371 47.826 0.00 0.00 0.00 4.26
1867 2069 5.102953 TCCATGACAAGTTTAGGGATCTG 57.897 43.478 0.00 0.00 0.00 2.90
1868 2070 4.164988 CCTCCATGACAAGTTTAGGGATCT 59.835 45.833 0.00 0.00 0.00 2.75
1869 2071 4.080299 ACCTCCATGACAAGTTTAGGGATC 60.080 45.833 0.00 0.00 0.00 3.36
1870 2072 3.852578 ACCTCCATGACAAGTTTAGGGAT 59.147 43.478 0.00 0.00 0.00 3.85
1871 2073 3.009033 CACCTCCATGACAAGTTTAGGGA 59.991 47.826 0.00 0.00 0.00 4.20
1872 2074 3.009033 TCACCTCCATGACAAGTTTAGGG 59.991 47.826 0.00 0.00 0.00 3.53
1873 2075 4.286297 TCACCTCCATGACAAGTTTAGG 57.714 45.455 0.00 0.00 0.00 2.69
1874 2076 4.637534 CCATCACCTCCATGACAAGTTTAG 59.362 45.833 0.00 0.00 0.00 1.85
1875 2077 4.042809 ACCATCACCTCCATGACAAGTTTA 59.957 41.667 0.00 0.00 0.00 2.01
1876 2078 3.181429 ACCATCACCTCCATGACAAGTTT 60.181 43.478 0.00 0.00 0.00 2.66
1877 2079 2.376518 ACCATCACCTCCATGACAAGTT 59.623 45.455 0.00 0.00 0.00 2.66
1878 2080 1.988107 ACCATCACCTCCATGACAAGT 59.012 47.619 0.00 0.00 0.00 3.16
1879 2081 2.795231 ACCATCACCTCCATGACAAG 57.205 50.000 0.00 0.00 0.00 3.16
1880 2082 3.156293 CAAACCATCACCTCCATGACAA 58.844 45.455 0.00 0.00 0.00 3.18
1881 2083 2.555006 CCAAACCATCACCTCCATGACA 60.555 50.000 0.00 0.00 0.00 3.58
1882 2084 2.094675 CCAAACCATCACCTCCATGAC 58.905 52.381 0.00 0.00 0.00 3.06
1883 2085 1.710244 ACCAAACCATCACCTCCATGA 59.290 47.619 0.00 0.00 0.00 3.07
1884 2086 2.094675 GACCAAACCATCACCTCCATG 58.905 52.381 0.00 0.00 0.00 3.66
1885 2087 1.005924 GGACCAAACCATCACCTCCAT 59.994 52.381 0.00 0.00 0.00 3.41
1886 2088 0.404040 GGACCAAACCATCACCTCCA 59.596 55.000 0.00 0.00 0.00 3.86
1887 2089 0.698818 AGGACCAAACCATCACCTCC 59.301 55.000 0.00 0.00 0.00 4.30
1888 2090 1.351017 TGAGGACCAAACCATCACCTC 59.649 52.381 0.00 0.00 42.64 3.85
1889 2091 1.444933 TGAGGACCAAACCATCACCT 58.555 50.000 0.00 0.00 0.00 4.00
1890 2092 2.286365 TTGAGGACCAAACCATCACC 57.714 50.000 0.00 0.00 0.00 4.02
1898 2100 4.739195 CGTTTTCAAGTTTGAGGACCAAA 58.261 39.130 0.00 0.00 42.07 3.28
1899 2101 3.428316 GCGTTTTCAAGTTTGAGGACCAA 60.428 43.478 0.00 0.00 38.61 3.67
1900 2102 2.098443 GCGTTTTCAAGTTTGAGGACCA 59.902 45.455 0.00 0.00 38.61 4.02
1901 2103 2.357952 AGCGTTTTCAAGTTTGAGGACC 59.642 45.455 0.00 0.00 38.61 4.46
1902 2104 3.064820 TCAGCGTTTTCAAGTTTGAGGAC 59.935 43.478 0.00 0.00 38.61 3.85
1903 2105 3.275143 TCAGCGTTTTCAAGTTTGAGGA 58.725 40.909 0.00 0.00 38.61 3.71
1904 2106 3.691049 TCAGCGTTTTCAAGTTTGAGG 57.309 42.857 0.00 0.00 38.61 3.86
1905 2107 7.858052 AATAATCAGCGTTTTCAAGTTTGAG 57.142 32.000 0.00 0.00 38.61 3.02
1906 2108 7.168972 CCAAATAATCAGCGTTTTCAAGTTTGA 59.831 33.333 0.00 0.00 34.92 2.69
1907 2109 7.042791 ACCAAATAATCAGCGTTTTCAAGTTTG 60.043 33.333 0.00 0.00 0.00 2.93
1908 2110 6.983890 ACCAAATAATCAGCGTTTTCAAGTTT 59.016 30.769 0.00 0.00 0.00 2.66
1909 2111 6.512297 ACCAAATAATCAGCGTTTTCAAGTT 58.488 32.000 0.00 0.00 0.00 2.66
1910 2112 6.084326 ACCAAATAATCAGCGTTTTCAAGT 57.916 33.333 0.00 0.00 0.00 3.16
1911 2113 5.572896 GGACCAAATAATCAGCGTTTTCAAG 59.427 40.000 0.00 0.00 0.00 3.02
1912 2114 5.242838 AGGACCAAATAATCAGCGTTTTCAA 59.757 36.000 0.00 0.00 0.00 2.69
1913 2115 4.764823 AGGACCAAATAATCAGCGTTTTCA 59.235 37.500 0.00 0.00 0.00 2.69
1914 2116 5.310720 AGGACCAAATAATCAGCGTTTTC 57.689 39.130 0.00 0.00 0.00 2.29
1915 2117 5.242838 TCAAGGACCAAATAATCAGCGTTTT 59.757 36.000 0.00 0.00 0.00 2.43
1916 2118 4.764823 TCAAGGACCAAATAATCAGCGTTT 59.235 37.500 0.00 0.00 0.00 3.60
1917 2119 4.331968 TCAAGGACCAAATAATCAGCGTT 58.668 39.130 0.00 0.00 0.00 4.84
1918 2120 3.950397 TCAAGGACCAAATAATCAGCGT 58.050 40.909 0.00 0.00 0.00 5.07
1919 2121 4.396166 AGTTCAAGGACCAAATAATCAGCG 59.604 41.667 0.00 0.00 0.00 5.18
1920 2122 5.904362 AGTTCAAGGACCAAATAATCAGC 57.096 39.130 0.00 0.00 0.00 4.26
1921 2123 7.040478 TGACAAGTTCAAGGACCAAATAATCAG 60.040 37.037 0.00 0.00 0.00 2.90
1922 2124 6.775142 TGACAAGTTCAAGGACCAAATAATCA 59.225 34.615 0.00 0.00 0.00 2.57
1923 2125 7.214467 TGACAAGTTCAAGGACCAAATAATC 57.786 36.000 0.00 0.00 0.00 1.75
1924 2126 7.309990 CCATGACAAGTTCAAGGACCAAATAAT 60.310 37.037 0.00 0.00 44.71 1.28
1925 2127 6.015519 CCATGACAAGTTCAAGGACCAAATAA 60.016 38.462 0.00 0.00 44.71 1.40
1926 2128 5.476599 CCATGACAAGTTCAAGGACCAAATA 59.523 40.000 0.00 0.00 44.71 1.40
1927 2129 4.281688 CCATGACAAGTTCAAGGACCAAAT 59.718 41.667 0.00 0.00 44.71 2.32
1928 2130 3.636300 CCATGACAAGTTCAAGGACCAAA 59.364 43.478 0.00 0.00 44.71 3.28
1929 2131 3.117701 TCCATGACAAGTTCAAGGACCAA 60.118 43.478 0.00 0.00 45.37 3.67
1930 2132 2.441375 TCCATGACAAGTTCAAGGACCA 59.559 45.455 0.00 0.00 45.37 4.02
1931 2133 3.140325 TCCATGACAAGTTCAAGGACC 57.860 47.619 0.00 0.00 45.37 4.46
1934 2136 3.304928 GCACTTCCATGACAAGTTCAAGG 60.305 47.826 7.16 0.00 43.48 3.61
1935 2137 3.316029 TGCACTTCCATGACAAGTTCAAG 59.684 43.478 7.16 0.00 37.92 3.02
1936 2138 3.286353 TGCACTTCCATGACAAGTTCAA 58.714 40.909 7.16 0.00 37.92 2.69
1937 2139 2.929641 TGCACTTCCATGACAAGTTCA 58.070 42.857 7.16 6.54 39.11 3.18
1938 2140 3.988379 TTGCACTTCCATGACAAGTTC 57.012 42.857 7.16 4.37 31.40 3.01
1939 2141 4.942761 ATTTGCACTTCCATGACAAGTT 57.057 36.364 7.16 0.00 31.40 2.66
1940 2142 4.942761 AATTTGCACTTCCATGACAAGT 57.057 36.364 0.00 0.00 34.24 3.16
1941 2143 4.449743 CCAAATTTGCACTTCCATGACAAG 59.550 41.667 12.92 0.00 0.00 3.16
1942 2144 4.141756 ACCAAATTTGCACTTCCATGACAA 60.142 37.500 12.92 0.00 0.00 3.18
1943 2145 3.387374 ACCAAATTTGCACTTCCATGACA 59.613 39.130 12.92 0.00 0.00 3.58
1944 2146 3.989817 GACCAAATTTGCACTTCCATGAC 59.010 43.478 12.92 0.00 0.00 3.06
1945 2147 3.006752 GGACCAAATTTGCACTTCCATGA 59.993 43.478 12.92 0.00 0.00 3.07
1946 2148 3.007182 AGGACCAAATTTGCACTTCCATG 59.993 43.478 12.92 0.00 0.00 3.66
1947 2149 3.242011 AGGACCAAATTTGCACTTCCAT 58.758 40.909 12.92 3.58 0.00 3.41
1948 2150 2.676748 AGGACCAAATTTGCACTTCCA 58.323 42.857 12.92 0.00 0.00 3.53
1949 2151 3.392882 CAAGGACCAAATTTGCACTTCC 58.607 45.455 12.92 13.66 0.00 3.46
1950 2152 2.802247 GCAAGGACCAAATTTGCACTTC 59.198 45.455 12.92 5.85 44.88 3.01
1951 2153 2.802774 CGCAAGGACCAAATTTGCACTT 60.803 45.455 12.92 12.29 45.58 3.16
1952 2154 1.269726 CGCAAGGACCAAATTTGCACT 60.270 47.619 12.92 7.11 45.58 4.40
1953 2155 1.139163 CGCAAGGACCAAATTTGCAC 58.861 50.000 12.92 8.24 45.58 4.57
1954 2156 1.035923 TCGCAAGGACCAAATTTGCA 58.964 45.000 12.92 0.00 45.58 4.08
1955 2157 2.147436 TTCGCAAGGACCAAATTTGC 57.853 45.000 12.92 6.18 42.75 3.68
1956 2158 3.674753 GTGATTCGCAAGGACCAAATTTG 59.325 43.478 11.40 11.40 38.47 2.32
1957 2159 3.320541 TGTGATTCGCAAGGACCAAATTT 59.679 39.130 0.00 0.00 38.47 1.82
1958 2160 2.890311 TGTGATTCGCAAGGACCAAATT 59.110 40.909 0.00 0.00 38.47 1.82
1959 2161 2.489329 CTGTGATTCGCAAGGACCAAAT 59.511 45.455 0.99 0.00 38.47 2.32
1960 2162 1.879380 CTGTGATTCGCAAGGACCAAA 59.121 47.619 0.99 0.00 38.47 3.28
1961 2163 1.522668 CTGTGATTCGCAAGGACCAA 58.477 50.000 0.99 0.00 38.47 3.67
1962 2164 0.955428 GCTGTGATTCGCAAGGACCA 60.955 55.000 0.99 0.00 38.47 4.02
1963 2165 0.674895 AGCTGTGATTCGCAAGGACC 60.675 55.000 0.99 0.00 38.47 4.46
1964 2166 0.723981 GAGCTGTGATTCGCAAGGAC 59.276 55.000 0.00 0.00 38.47 3.85
1965 2167 0.737367 CGAGCTGTGATTCGCAAGGA 60.737 55.000 0.00 0.00 38.47 3.36
1966 2168 1.712081 CGAGCTGTGATTCGCAAGG 59.288 57.895 0.00 0.00 38.47 3.61
1971 2173 1.016130 ACTTGGCGAGCTGTGATTCG 61.016 55.000 0.37 0.00 39.69 3.34
1972 2174 0.445436 CACTTGGCGAGCTGTGATTC 59.555 55.000 0.37 0.00 32.72 2.52
1973 2175 0.957395 CCACTTGGCGAGCTGTGATT 60.957 55.000 0.37 0.00 32.72 2.57
1974 2176 1.376424 CCACTTGGCGAGCTGTGAT 60.376 57.895 0.37 0.00 32.72 3.06
1975 2177 2.031012 CCACTTGGCGAGCTGTGA 59.969 61.111 0.37 0.00 32.72 3.58
1976 2178 2.031012 TCCACTTGGCGAGCTGTG 59.969 61.111 0.37 0.00 34.44 3.66
1977 2179 2.345244 CTCCACTTGGCGAGCTGT 59.655 61.111 0.37 0.00 34.44 4.40
1978 2180 3.123620 GCTCCACTTGGCGAGCTG 61.124 66.667 0.37 0.00 46.48 4.24
1981 2183 2.435586 CTGGCTCCACTTGGCGAG 60.436 66.667 0.00 0.00 34.44 5.03
1982 2184 4.704833 GCTGGCTCCACTTGGCGA 62.705 66.667 0.00 0.00 34.44 5.54
1983 2185 4.711949 AGCTGGCTCCACTTGGCG 62.712 66.667 0.00 0.00 34.44 5.69
1984 2186 3.060615 CAGCTGGCTCCACTTGGC 61.061 66.667 5.57 0.00 34.44 4.52
1985 2187 2.360852 CCAGCTGGCTCCACTTGG 60.361 66.667 22.33 0.00 0.00 3.61
1986 2188 2.360852 CCCAGCTGGCTCCACTTG 60.361 66.667 28.39 7.14 0.00 3.16
2011 2213 0.179200 CAAAATACACGGCGCTGACC 60.179 55.000 25.98 0.00 0.00 4.02
2012 2214 0.793104 GCAAAATACACGGCGCTGAC 60.793 55.000 25.98 0.00 0.00 3.51
2013 2215 1.231296 TGCAAAATACACGGCGCTGA 61.231 50.000 25.98 0.00 0.00 4.26
2014 2216 0.794229 CTGCAAAATACACGGCGCTG 60.794 55.000 16.39 16.39 0.00 5.18
2015 2217 1.234615 ACTGCAAAATACACGGCGCT 61.235 50.000 6.90 0.00 0.00 5.92
2016 2218 0.386731 AACTGCAAAATACACGGCGC 60.387 50.000 6.90 0.00 0.00 6.53
2017 2219 1.713404 CAAACTGCAAAATACACGGCG 59.287 47.619 4.80 4.80 0.00 6.46
2018 2220 1.455408 GCAAACTGCAAAATACACGGC 59.545 47.619 0.00 0.00 44.26 5.68
2037 2239 4.841617 GGGCTAAAGGCAGGGGGC 62.842 72.222 5.85 0.00 44.01 5.80
2038 2240 1.286305 TTAGGGCTAAAGGCAGGGGG 61.286 60.000 5.85 0.00 44.01 5.40
2039 2241 0.853530 ATTAGGGCTAAAGGCAGGGG 59.146 55.000 5.85 0.00 44.01 4.79
2040 2242 1.494721 TCATTAGGGCTAAAGGCAGGG 59.505 52.381 5.85 0.00 44.01 4.45
2041 2243 2.952310 GTTCATTAGGGCTAAAGGCAGG 59.048 50.000 5.85 0.00 44.01 4.85
2042 2244 2.952310 GGTTCATTAGGGCTAAAGGCAG 59.048 50.000 5.85 0.00 44.01 4.85
2043 2245 2.357777 GGGTTCATTAGGGCTAAAGGCA 60.358 50.000 5.85 0.00 44.01 4.75
2044 2246 2.307768 GGGTTCATTAGGGCTAAAGGC 58.692 52.381 0.00 0.00 40.90 4.35
2045 2247 3.288092 GTGGGTTCATTAGGGCTAAAGG 58.712 50.000 0.00 0.00 0.00 3.11
2046 2248 3.694566 GTGTGGGTTCATTAGGGCTAAAG 59.305 47.826 0.00 0.00 0.00 1.85
2047 2249 3.074687 TGTGTGGGTTCATTAGGGCTAAA 59.925 43.478 0.00 0.00 0.00 1.85
2048 2250 2.645297 TGTGTGGGTTCATTAGGGCTAA 59.355 45.455 0.00 0.00 0.00 3.09
2049 2251 2.270858 TGTGTGGGTTCATTAGGGCTA 58.729 47.619 0.00 0.00 0.00 3.93
2050 2252 1.072266 TGTGTGGGTTCATTAGGGCT 58.928 50.000 0.00 0.00 0.00 5.19
2051 2253 1.544246 GTTGTGTGGGTTCATTAGGGC 59.456 52.381 0.00 0.00 0.00 5.19
2052 2254 2.167662 GGTTGTGTGGGTTCATTAGGG 58.832 52.381 0.00 0.00 0.00 3.53
2053 2255 2.167662 GGGTTGTGTGGGTTCATTAGG 58.832 52.381 0.00 0.00 0.00 2.69
2054 2256 2.870175 TGGGTTGTGTGGGTTCATTAG 58.130 47.619 0.00 0.00 0.00 1.73
2055 2257 3.534357 ATGGGTTGTGTGGGTTCATTA 57.466 42.857 0.00 0.00 0.00 1.90
2056 2258 2.368221 CAATGGGTTGTGTGGGTTCATT 59.632 45.455 0.00 0.00 0.00 2.57
2057 2259 1.969923 CAATGGGTTGTGTGGGTTCAT 59.030 47.619 0.00 0.00 0.00 2.57
2058 2260 1.407936 CAATGGGTTGTGTGGGTTCA 58.592 50.000 0.00 0.00 0.00 3.18
2059 2261 0.033366 GCAATGGGTTGTGTGGGTTC 59.967 55.000 0.00 0.00 37.65 3.62
2060 2262 0.689080 TGCAATGGGTTGTGTGGGTT 60.689 50.000 0.00 0.00 37.65 4.11
2061 2263 0.689080 TTGCAATGGGTTGTGTGGGT 60.689 50.000 0.00 0.00 37.65 4.51
2062 2264 0.467384 TTTGCAATGGGTTGTGTGGG 59.533 50.000 0.00 0.00 37.65 4.61
2063 2265 2.144730 CATTTGCAATGGGTTGTGTGG 58.855 47.619 0.00 0.00 37.65 4.17
2064 2266 1.532007 GCATTTGCAATGGGTTGTGTG 59.468 47.619 0.00 0.00 41.59 3.82
2065 2267 1.881591 GCATTTGCAATGGGTTGTGT 58.118 45.000 0.00 0.00 41.59 3.72
2077 2279 4.247258 TCTGGTTCATGAATTGCATTTGC 58.753 39.130 12.12 0.00 42.50 3.68
2078 2280 6.347888 GGTTTCTGGTTCATGAATTGCATTTG 60.348 38.462 12.12 0.00 34.15 2.32
2079 2281 5.702209 GGTTTCTGGTTCATGAATTGCATTT 59.298 36.000 12.12 0.00 34.15 2.32
2080 2282 5.240121 GGTTTCTGGTTCATGAATTGCATT 58.760 37.500 12.12 0.00 34.15 3.56
2081 2283 4.322953 GGGTTTCTGGTTCATGAATTGCAT 60.323 41.667 12.12 0.00 37.85 3.96
2082 2284 3.006752 GGGTTTCTGGTTCATGAATTGCA 59.993 43.478 12.12 0.00 0.00 4.08
2083 2285 3.259123 AGGGTTTCTGGTTCATGAATTGC 59.741 43.478 12.12 0.00 0.00 3.56
2084 2286 4.523943 TCAGGGTTTCTGGTTCATGAATTG 59.476 41.667 12.12 5.30 43.53 2.32
2085 2287 4.524328 GTCAGGGTTTCTGGTTCATGAATT 59.476 41.667 12.12 0.00 43.53 2.17
2086 2288 4.082125 GTCAGGGTTTCTGGTTCATGAAT 58.918 43.478 12.12 0.00 43.53 2.57
2087 2289 3.117701 TGTCAGGGTTTCTGGTTCATGAA 60.118 43.478 3.38 3.38 43.53 2.57
2088 2290 2.441375 TGTCAGGGTTTCTGGTTCATGA 59.559 45.455 0.00 0.00 43.53 3.07
2089 2291 2.816087 CTGTCAGGGTTTCTGGTTCATG 59.184 50.000 0.00 0.00 43.53 3.07
2090 2292 2.815589 GCTGTCAGGGTTTCTGGTTCAT 60.816 50.000 1.14 0.00 43.53 2.57
2091 2293 1.476833 GCTGTCAGGGTTTCTGGTTCA 60.477 52.381 1.14 0.00 43.53 3.18
2120 2322 1.271926 ACCCCCTTAGTTGTGATGCAC 60.272 52.381 0.00 0.00 34.56 4.57
2338 2605 6.486320 TGTTGCTCTGAATTTGTGTATGAAGA 59.514 34.615 0.00 0.00 0.00 2.87
2387 2654 5.102953 TGAATACAGGAAGTAGCAATGCT 57.897 39.130 13.92 13.92 43.41 3.79
2388 2655 5.586243 TCTTGAATACAGGAAGTAGCAATGC 59.414 40.000 0.00 0.00 35.85 3.56
2389 2656 7.615582 TTCTTGAATACAGGAAGTAGCAATG 57.384 36.000 0.00 0.00 37.23 2.82
2390 2657 7.831193 ACATTCTTGAATACAGGAAGTAGCAAT 59.169 33.333 0.00 0.00 43.33 3.56
2391 2658 7.168219 ACATTCTTGAATACAGGAAGTAGCAA 58.832 34.615 0.00 0.00 43.33 3.91
2392 2659 6.711277 ACATTCTTGAATACAGGAAGTAGCA 58.289 36.000 0.00 0.00 43.33 3.49
2393 2660 7.334421 TCAACATTCTTGAATACAGGAAGTAGC 59.666 37.037 0.00 0.00 43.33 3.58
2394 2661 8.777865 TCAACATTCTTGAATACAGGAAGTAG 57.222 34.615 0.00 0.00 43.33 2.57
2421 2688 7.986085 GGTGCTGAATTGATAGTACCATATT 57.014 36.000 13.06 0.00 45.50 1.28
2426 2693 3.131396 CGGGTGCTGAATTGATAGTACC 58.869 50.000 10.76 10.76 45.47 3.34
2427 2694 3.793559 ACGGGTGCTGAATTGATAGTAC 58.206 45.455 0.00 0.00 0.00 2.73
2428 2695 5.601583 TTACGGGTGCTGAATTGATAGTA 57.398 39.130 0.00 0.00 0.00 1.82
2429 2696 4.481368 TTACGGGTGCTGAATTGATAGT 57.519 40.909 0.00 0.00 0.00 2.12
2430 2697 5.056480 TGATTACGGGTGCTGAATTGATAG 58.944 41.667 0.00 0.00 0.00 2.08
2431 2698 5.029807 TGATTACGGGTGCTGAATTGATA 57.970 39.130 0.00 0.00 0.00 2.15
2432 2699 3.884895 TGATTACGGGTGCTGAATTGAT 58.115 40.909 0.00 0.00 0.00 2.57
2433 2700 3.342377 TGATTACGGGTGCTGAATTGA 57.658 42.857 0.00 0.00 0.00 2.57
2445 2712 7.218204 GCTAATTTGTGCTAAAGTTGATTACGG 59.782 37.037 0.00 0.00 0.00 4.02
2446 2713 7.748683 TGCTAATTTGTGCTAAAGTTGATTACG 59.251 33.333 0.00 0.00 0.00 3.18
2457 2724 9.086336 GAATAAAGCAATGCTAATTTGTGCTAA 57.914 29.630 8.68 0.00 44.52 3.09
2458 2725 8.249638 TGAATAAAGCAATGCTAATTTGTGCTA 58.750 29.630 8.68 0.00 44.52 3.49
2519 2787 4.377021 TGCCAGTGTTGTGTTAAGACTAG 58.623 43.478 4.21 0.00 0.00 2.57
2520 2788 4.409718 TGCCAGTGTTGTGTTAAGACTA 57.590 40.909 4.21 0.00 0.00 2.59
2524 2792 4.043750 CACAATGCCAGTGTTGTGTTAAG 58.956 43.478 14.05 0.00 46.17 1.85
2545 2813 7.826744 TGCATACAGTAAATACTCCATTTGTCA 59.173 33.333 0.00 0.00 37.42 3.58
2546 2814 8.208718 TGCATACAGTAAATACTCCATTTGTC 57.791 34.615 0.00 0.00 37.42 3.18
2548 2816 8.892723 TCTTGCATACAGTAAATACTCCATTTG 58.107 33.333 0.00 0.00 37.42 2.32
2549 2817 9.461312 TTCTTGCATACAGTAAATACTCCATTT 57.539 29.630 0.00 0.00 40.10 2.32
2550 2818 9.632638 ATTCTTGCATACAGTAAATACTCCATT 57.367 29.630 0.00 0.00 33.46 3.16
2552 2820 8.486210 AGATTCTTGCATACAGTAAATACTCCA 58.514 33.333 0.00 0.00 33.46 3.86
2553 2821 8.894768 AGATTCTTGCATACAGTAAATACTCC 57.105 34.615 0.00 0.00 33.46 3.85
2559 2827 9.502091 ACTGTTAAGATTCTTGCATACAGTAAA 57.498 29.630 22.70 3.20 42.06 2.01
2640 2909 2.756207 CCATTGATCCTTGCATGTGACA 59.244 45.455 0.00 0.00 0.00 3.58
2641 2910 3.018856 TCCATTGATCCTTGCATGTGAC 58.981 45.455 0.00 0.00 0.00 3.67
2653 2922 2.473816 TGACGCGATCTTCCATTGATC 58.526 47.619 15.93 0.00 37.53 2.92
2669 2938 0.109458 AATGCAGTGCAATGCTGACG 60.109 50.000 35.48 1.27 46.63 4.35
2670 2939 1.201647 AGAATGCAGTGCAATGCTGAC 59.798 47.619 35.48 25.16 46.63 3.51
2727 2999 2.402564 CCTTCTCCTGCCATCTTCCTA 58.597 52.381 0.00 0.00 0.00 2.94
2749 3021 4.277672 GCCGGAGTAAAAAGGTCTTTTTCT 59.722 41.667 20.45 17.05 46.30 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.