Multiple sequence alignment - TraesCS2B01G175800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G175800 chr2B 100.000 6302 0 0 1 6302 150718410 150712109 0.000000 11638.0
1 TraesCS2B01G175800 chr2D 92.887 4330 141 50 1448 5714 99138938 99134713 0.000000 6135.0
2 TraesCS2B01G175800 chr2D 89.729 1363 76 31 1 1321 99140372 99139032 0.000000 1683.0
3 TraesCS2B01G175800 chr2D 97.297 592 16 0 5711 6302 99134633 99134042 0.000000 1005.0
4 TraesCS2B01G175800 chr2A 92.751 2828 128 41 1449 4233 98143440 98140647 0.000000 4015.0
5 TraesCS2B01G175800 chr2A 94.030 2077 78 12 4228 6302 98140519 98138487 0.000000 3107.0
6 TraesCS2B01G175800 chr2A 87.258 1397 77 45 1 1321 98144906 98143535 0.000000 1500.0
7 TraesCS2B01G175800 chr4A 87.273 55 3 4 2945 2999 700069411 700069361 0.000068 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G175800 chr2B 150712109 150718410 6301 True 11638 11638 100.000000 1 6302 1 chr2B.!!$R1 6301
1 TraesCS2B01G175800 chr2D 99134042 99140372 6330 True 2941 6135 93.304333 1 6302 3 chr2D.!!$R1 6301
2 TraesCS2B01G175800 chr2A 98138487 98144906 6419 True 2874 4015 91.346333 1 6302 3 chr2A.!!$R1 6301

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.033228 GTGGATCGGATCTGGCTCTG 59.967 60.0 16.96 0.00 0.00 3.35 F
1417 1539 0.032813 ATGTTCTTGGGGAGGGCATG 60.033 55.0 0.00 0.00 0.00 4.06 F
2851 3061 0.033208 TTTATCCTTGGCCAGCCTGG 60.033 55.0 6.32 6.32 41.55 4.45 F
2885 3095 0.322008 CACCCCTTCTTCTGCAGGTC 60.322 60.0 15.13 0.00 0.00 3.85 F
3056 3266 0.610232 AGGCACTAAAGGGCAAGCTG 60.610 55.0 6.54 0.00 36.02 4.24 F
4419 4768 0.951558 AACGCCACTGATTGTTGTCC 59.048 50.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1721 1855 0.038526 TCACCTCGAGCGTTCCTTTC 60.039 55.0 6.99 0.0 0.00 2.62 R
2974 3184 0.036952 GCTTAGCCACAGTGAGAGCA 60.037 55.0 0.62 0.0 0.00 4.26 R
4086 4302 0.240945 GTTGATTGCGGGGTTGTCTG 59.759 55.0 0.00 0.0 0.00 3.51 R
4402 4751 2.093306 TAGGACAACAATCAGTGGCG 57.907 50.0 0.00 0.0 0.00 5.69 R
4967 5316 1.619654 TGTTAAGGTGCAGCAATGCT 58.380 45.0 19.63 0.0 40.77 3.79 R
6255 6691 0.178900 AGAGGGTTCCGGGAAGAAGT 60.179 55.0 10.35 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.048597 GCACACACGTGGATCGGA 60.049 61.111 21.57 0.00 43.81 4.55
23 24 1.421410 GCACACACGTGGATCGGATC 61.421 60.000 21.57 9.54 43.81 3.36
31 32 0.033228 GTGGATCGGATCTGGCTCTG 59.967 60.000 16.96 0.00 0.00 3.35
62 63 1.144969 TAGAAAGCAACGAAGCACCG 58.855 50.000 6.62 0.00 36.85 4.94
145 148 2.017623 GCCTGCTGATTGAGAGCATGT 61.018 52.381 0.00 0.00 45.27 3.21
177 180 2.421073 TGAGCTCTCGCAATTGAAATGG 59.579 45.455 16.19 0.00 39.10 3.16
178 181 1.133790 AGCTCTCGCAATTGAAATGGC 59.866 47.619 10.34 7.28 39.10 4.40
264 269 0.107897 TTGCATATTCTCCCGCGTGT 60.108 50.000 4.92 0.00 0.00 4.49
274 279 0.815734 TCCCGCGTGTTTTGGAAAAA 59.184 45.000 4.92 0.00 0.00 1.94
397 408 1.873591 ACACGATCAACAGTCTTTGCC 59.126 47.619 0.00 0.00 0.00 4.52
404 415 1.531149 CAACAGTCTTTGCCGTCGAAT 59.469 47.619 0.00 0.00 0.00 3.34
462 482 9.833894 GCTTCAATTATGCAACAAATTAATACG 57.166 29.630 0.00 0.00 0.00 3.06
480 500 1.268589 ACGAGTACGAATGATCTGCGG 60.269 52.381 0.00 0.00 42.66 5.69
523 544 2.599848 GCACGCAACACACACTCTTTAG 60.600 50.000 0.00 0.00 0.00 1.85
570 591 7.363268 CCCCTGATTCCTTTGAGACATAAAAAG 60.363 40.741 0.00 0.00 0.00 2.27
572 595 8.796475 CCTGATTCCTTTGAGACATAAAAAGAA 58.204 33.333 0.00 0.00 33.63 2.52
576 599 9.987272 ATTCCTTTGAGACATAAAAAGAAAAGG 57.013 29.630 0.00 0.00 42.37 3.11
674 716 2.853077 CCTCCTCCCCCATAAAAACTCT 59.147 50.000 0.00 0.00 0.00 3.24
677 719 3.780850 TCCTCCCCCATAAAAACTCTCTC 59.219 47.826 0.00 0.00 0.00 3.20
931 1004 4.160626 CGAGTCCTATCCTTCTTGACCTTT 59.839 45.833 0.00 0.00 0.00 3.11
932 1005 5.666462 GAGTCCTATCCTTCTTGACCTTTC 58.334 45.833 0.00 0.00 0.00 2.62
934 1007 3.451178 TCCTATCCTTCTTGACCTTTCCG 59.549 47.826 0.00 0.00 0.00 4.30
1198 1280 0.820891 CCCCCTCGCCATGAAGATTG 60.821 60.000 0.00 0.00 0.00 2.67
1204 1286 3.012518 CTCGCCATGAAGATTGTTTCCT 58.987 45.455 0.00 0.00 0.00 3.36
1224 1306 4.020573 TCCTGGATTCTTTCGTCTTGCTTA 60.021 41.667 0.00 0.00 0.00 3.09
1231 1313 3.678072 TCTTTCGTCTTGCTTATTCGTGG 59.322 43.478 0.00 0.00 0.00 4.94
1321 1437 4.008330 CCTCTACGAGGTAAGAGTTCACA 58.992 47.826 1.71 0.00 44.25 3.58
1322 1438 4.458295 CCTCTACGAGGTAAGAGTTCACAA 59.542 45.833 1.71 0.00 44.25 3.33
1324 1440 5.068636 TCTACGAGGTAAGAGTTCACAACT 58.931 41.667 0.00 0.00 46.38 3.16
1332 1448 2.464582 AGTTCACAACTCCTCCCCC 58.535 57.895 0.00 0.00 37.02 5.40
1333 1449 0.401395 AGTTCACAACTCCTCCCCCA 60.401 55.000 0.00 0.00 37.02 4.96
1334 1450 0.476771 GTTCACAACTCCTCCCCCAA 59.523 55.000 0.00 0.00 0.00 4.12
1335 1451 1.075536 GTTCACAACTCCTCCCCCAAT 59.924 52.381 0.00 0.00 0.00 3.16
1336 1452 1.455822 TCACAACTCCTCCCCCAATT 58.544 50.000 0.00 0.00 0.00 2.32
1337 1453 1.786441 TCACAACTCCTCCCCCAATTT 59.214 47.619 0.00 0.00 0.00 1.82
1338 1454 2.178984 TCACAACTCCTCCCCCAATTTT 59.821 45.455 0.00 0.00 0.00 1.82
1339 1455 2.972021 CACAACTCCTCCCCCAATTTTT 59.028 45.455 0.00 0.00 0.00 1.94
1359 1481 6.945938 TTTTTCCTTCAGATTGTTCGGTAA 57.054 33.333 0.00 0.00 0.00 2.85
1363 1485 6.737254 TCCTTCAGATTGTTCGGTAAATTC 57.263 37.500 0.00 0.00 0.00 2.17
1365 1487 5.121768 CCTTCAGATTGTTCGGTAAATTCGT 59.878 40.000 0.00 0.00 0.00 3.85
1367 1489 5.922546 TCAGATTGTTCGGTAAATTCGTTG 58.077 37.500 0.00 0.00 0.00 4.10
1368 1490 5.467399 TCAGATTGTTCGGTAAATTCGTTGT 59.533 36.000 0.00 0.00 0.00 3.32
1369 1491 5.788531 CAGATTGTTCGGTAAATTCGTTGTC 59.211 40.000 0.00 0.00 0.00 3.18
1370 1492 5.699458 AGATTGTTCGGTAAATTCGTTGTCT 59.301 36.000 0.00 0.00 0.00 3.41
1408 1530 6.147864 TCTTCTTGTTGAAATGTTCTTGGG 57.852 37.500 0.00 0.00 33.79 4.12
1410 1532 4.541705 TCTTGTTGAAATGTTCTTGGGGA 58.458 39.130 0.00 0.00 0.00 4.81
1411 1533 4.584325 TCTTGTTGAAATGTTCTTGGGGAG 59.416 41.667 0.00 0.00 0.00 4.30
1412 1534 3.230134 TGTTGAAATGTTCTTGGGGAGG 58.770 45.455 0.00 0.00 0.00 4.30
1413 1535 2.562738 GTTGAAATGTTCTTGGGGAGGG 59.437 50.000 0.00 0.00 0.00 4.30
1414 1536 1.186200 GAAATGTTCTTGGGGAGGGC 58.814 55.000 0.00 0.00 0.00 5.19
1415 1537 0.486879 AAATGTTCTTGGGGAGGGCA 59.513 50.000 0.00 0.00 0.00 5.36
1416 1538 0.712380 AATGTTCTTGGGGAGGGCAT 59.288 50.000 0.00 0.00 0.00 4.40
1417 1539 0.032813 ATGTTCTTGGGGAGGGCATG 60.033 55.000 0.00 0.00 0.00 4.06
1418 1540 1.380380 GTTCTTGGGGAGGGCATGG 60.380 63.158 0.00 0.00 0.00 3.66
1419 1541 3.301222 TTCTTGGGGAGGGCATGGC 62.301 63.158 11.56 11.56 0.00 4.40
1441 1563 0.457035 CCGAAGGCACAATGGATTGG 59.543 55.000 4.45 0.00 46.14 3.16
1442 1564 0.457035 CGAAGGCACAATGGATTGGG 59.543 55.000 4.45 0.79 43.91 4.12
1443 1565 1.560505 GAAGGCACAATGGATTGGGT 58.439 50.000 3.63 0.00 43.03 4.51
1444 1566 2.733956 GAAGGCACAATGGATTGGGTA 58.266 47.619 3.63 0.00 43.03 3.69
1445 1567 2.143876 AGGCACAATGGATTGGGTAC 57.856 50.000 3.63 0.00 43.03 3.34
1446 1568 1.640670 AGGCACAATGGATTGGGTACT 59.359 47.619 3.63 0.34 43.03 2.73
1460 1583 1.004200 GTACTCGGGTGGTTGGGTG 60.004 63.158 0.00 0.00 0.00 4.61
1512 1635 1.086067 CATCGATTCGCAGCCACACT 61.086 55.000 0.00 0.00 0.00 3.55
1625 1753 0.523966 AGAAGAAGACTCACCGAGCG 59.476 55.000 0.00 0.00 32.04 5.03
1680 1814 2.608506 GCGCGGTTAAAAATGGGTTCTT 60.609 45.455 8.83 0.00 0.00 2.52
1684 1818 4.262292 GCGGTTAAAAATGGGTTCTTTCCT 60.262 41.667 0.00 0.00 0.00 3.36
1685 1819 5.466819 CGGTTAAAAATGGGTTCTTTCCTC 58.533 41.667 0.00 0.00 0.00 3.71
1686 1820 5.243060 CGGTTAAAAATGGGTTCTTTCCTCT 59.757 40.000 0.00 0.00 0.00 3.69
1687 1821 6.569801 CGGTTAAAAATGGGTTCTTTCCTCTC 60.570 42.308 0.00 0.00 0.00 3.20
1688 1822 6.493802 GGTTAAAAATGGGTTCTTTCCTCTCT 59.506 38.462 0.00 0.00 0.00 3.10
1689 1823 7.309255 GGTTAAAAATGGGTTCTTTCCTCTCTC 60.309 40.741 0.00 0.00 0.00 3.20
1690 1824 5.590976 AAAATGGGTTCTTTCCTCTCTCT 57.409 39.130 0.00 0.00 0.00 3.10
1691 1825 5.590976 AAATGGGTTCTTTCCTCTCTCTT 57.409 39.130 0.00 0.00 0.00 2.85
1721 1855 2.066262 ACTGCGACATCGGTGTAAAAG 58.934 47.619 0.00 1.63 39.09 2.27
1940 2085 0.546122 ATTGGCCAAGATCCAGCGTA 59.454 50.000 24.94 0.00 34.66 4.42
1941 2086 0.392461 TTGGCCAAGATCCAGCGTAC 60.392 55.000 16.05 0.00 34.66 3.67
1942 2087 1.264749 TGGCCAAGATCCAGCGTACT 61.265 55.000 0.61 0.00 0.00 2.73
1959 2104 4.563524 GTACTAGTTACGTGCAGCAAAG 57.436 45.455 0.00 0.00 0.00 2.77
1979 2143 3.088532 AGAAACAAACACTGGCTGTCAA 58.911 40.909 0.00 0.00 30.29 3.18
2122 2309 1.280746 GAACGACGGCGATCGGATA 59.719 57.895 22.49 0.00 46.56 2.59
2173 2368 2.281208 CCGGAAGCCACCAAACGA 60.281 61.111 0.00 0.00 0.00 3.85
2178 2373 2.130073 GAAGCCACCAAACGAGTGCC 62.130 60.000 0.00 0.00 33.75 5.01
2232 2427 4.202050 GGGAGCCGTCTAGTTTATCGTTTA 60.202 45.833 0.00 0.00 0.00 2.01
2233 2428 4.737279 GGAGCCGTCTAGTTTATCGTTTAC 59.263 45.833 0.00 0.00 0.00 2.01
2295 2491 4.141665 TGGCATCATCACATCACATACTGA 60.142 41.667 0.00 0.00 0.00 3.41
2318 2514 2.623878 ATGCAATGCAGAGAGAGAGG 57.376 50.000 14.98 0.00 43.65 3.69
2319 2515 1.565067 TGCAATGCAGAGAGAGAGGA 58.435 50.000 2.72 0.00 33.32 3.71
2320 2516 2.117051 TGCAATGCAGAGAGAGAGGAT 58.883 47.619 2.72 0.00 33.32 3.24
2321 2517 3.303049 TGCAATGCAGAGAGAGAGGATA 58.697 45.455 2.72 0.00 33.32 2.59
2322 2518 3.708121 TGCAATGCAGAGAGAGAGGATAA 59.292 43.478 2.72 0.00 33.32 1.75
2323 2519 4.202233 TGCAATGCAGAGAGAGAGGATAAG 60.202 45.833 2.72 0.00 33.32 1.73
2324 2520 4.039004 GCAATGCAGAGAGAGAGGATAAGA 59.961 45.833 0.00 0.00 0.00 2.10
2326 2522 5.789643 ATGCAGAGAGAGAGGATAAGAAC 57.210 43.478 0.00 0.00 0.00 3.01
2327 2523 3.957497 TGCAGAGAGAGAGGATAAGAACC 59.043 47.826 0.00 0.00 0.00 3.62
2328 2524 3.957497 GCAGAGAGAGAGGATAAGAACCA 59.043 47.826 0.00 0.00 0.00 3.67
2331 2527 6.572519 CAGAGAGAGAGGATAAGAACCAAAG 58.427 44.000 0.00 0.00 0.00 2.77
2336 2532 5.942826 AGAGAGGATAAGAACCAAAGCAAAG 59.057 40.000 0.00 0.00 0.00 2.77
2464 2660 5.878669 ACTAGACCGTTTCTTTTGAGTGTTT 59.121 36.000 0.00 0.00 35.55 2.83
2470 2666 3.691049 TTCTTTTGAGTGTTTGGCTCG 57.309 42.857 0.00 0.00 35.85 5.03
2554 2755 1.661112 CTGCGATCGGAAAGAAAGGTC 59.339 52.381 18.30 0.00 0.00 3.85
2670 2871 6.630443 GCATTAACGATGAAACTGCAATCTAG 59.370 38.462 0.00 0.00 38.03 2.43
2729 2932 5.009631 TCATCCTCCGTTGAAAATGTGATT 58.990 37.500 0.00 0.00 0.00 2.57
2736 2939 4.236935 CGTTGAAAATGTGATTTCCCTGG 58.763 43.478 0.00 0.00 38.30 4.45
2739 2942 6.466812 GTTGAAAATGTGATTTCCCTGGAAT 58.533 36.000 0.00 0.00 38.30 3.01
2767 2970 2.993545 TGCACGGAAAAACAGAAATCG 58.006 42.857 0.00 0.00 0.00 3.34
2816 3026 3.127548 AGCAATCAGGCATTTCTGTAACG 59.872 43.478 0.00 0.00 36.25 3.18
2827 3037 4.771590 TTTCTGTAACGACTATCCACGT 57.228 40.909 0.00 0.00 44.57 4.49
2851 3061 0.033208 TTTATCCTTGGCCAGCCTGG 60.033 55.000 6.32 6.32 41.55 4.45
2885 3095 0.322008 CACCCCTTCTTCTGCAGGTC 60.322 60.000 15.13 0.00 0.00 3.85
2924 3134 6.378564 CCAAGATATACATGGTCCTCGAGTAT 59.621 42.308 12.31 4.19 33.27 2.12
2970 3180 7.042335 TGAGAAAATCGTAAGGATTCTTCTCC 58.958 38.462 22.86 14.91 44.59 3.71
2987 3197 2.762887 TCTCCTTATGCTCTCACTGTGG 59.237 50.000 8.11 0.00 0.00 4.17
2988 3198 1.208052 TCCTTATGCTCTCACTGTGGC 59.792 52.381 8.11 4.29 0.00 5.01
3002 3212 1.400846 CTGTGGCTAAGCATGCTTCAG 59.599 52.381 35.10 28.38 37.47 3.02
3010 3220 2.391469 GCATGCTTCAGATGCGTCT 58.609 52.632 11.37 1.48 37.10 4.18
3013 3223 2.096367 GCATGCTTCAGATGCGTCTATG 60.096 50.000 11.37 9.50 37.10 2.23
3035 3245 4.469586 TGTCTAACACTCCCTAATGCATGA 59.530 41.667 0.00 0.00 0.00 3.07
3056 3266 0.610232 AGGCACTAAAGGGCAAGCTG 60.610 55.000 6.54 0.00 36.02 4.24
3057 3267 1.213799 GCACTAAAGGGCAAGCTGC 59.786 57.895 0.00 0.00 44.08 5.25
3098 3308 2.012673 CTGTTCCAGCAGCTAATGGAC 58.987 52.381 16.64 12.70 45.20 4.02
3189 3399 5.174037 TCCACCTTTTGATTCCGAACTAT 57.826 39.130 0.00 0.00 0.00 2.12
3337 3548 6.275494 ACGGGTATGGTATTTTTCCTTTTG 57.725 37.500 0.00 0.00 0.00 2.44
3409 3620 5.372343 AAGATGGATTACTGCATACCACA 57.628 39.130 0.00 0.00 32.99 4.17
3450 3661 1.062810 AGCCCCTGAGGTAAGGACTAG 60.063 57.143 0.00 0.00 40.02 2.57
3500 3711 7.989741 CCTAATACTGGTTCATGATTCTTCTGT 59.010 37.037 0.00 0.00 0.00 3.41
3513 3724 9.605275 CATGATTCTTCTGTTTACTCCATAAGA 57.395 33.333 0.00 0.00 0.00 2.10
3543 3754 6.823182 TGGAATTTCTGATAGTGGTGTATGTG 59.177 38.462 0.00 0.00 0.00 3.21
3751 3964 1.743772 GCGGCCATATCTCACAGTGTT 60.744 52.381 2.24 0.00 0.00 3.32
4086 4302 2.747396 TTGAAGCACAATGGCATTCC 57.253 45.000 10.36 1.91 35.83 3.01
4334 4683 3.136626 GGGCCACACCTGAGATAATAAGT 59.863 47.826 4.39 0.00 39.10 2.24
4350 4699 9.893305 AGATAATAAGTACAGCAAACAACAAAC 57.107 29.630 0.00 0.00 0.00 2.93
4357 4706 6.750039 AGTACAGCAAACAACAAACATGTTAC 59.250 34.615 12.39 0.88 39.98 2.50
4402 4751 2.213499 CAGGAACCAGTGACTGACAAC 58.787 52.381 15.33 1.75 32.44 3.32
4419 4768 0.951558 AACGCCACTGATTGTTGTCC 59.048 50.000 0.00 0.00 0.00 4.02
4444 4793 4.817318 TTATGTACATGTCCTCACTGCA 57.183 40.909 18.81 0.00 0.00 4.41
4468 4817 5.889853 ACATCTGCTATGCCAATATTATGGG 59.110 40.000 0.00 0.00 41.01 4.00
4479 4828 7.846066 TGCCAATATTATGGGGTTATAAATGC 58.154 34.615 0.00 0.00 41.01 3.56
4527 4876 5.117745 CACTAAACTCAGATGTGTGACTTCG 59.882 44.000 0.00 0.00 0.00 3.79
4656 5005 4.761739 CAGAAGAACAATGGCAAGGTTAGA 59.238 41.667 7.06 0.00 0.00 2.10
4677 5026 3.303938 AGACCTCAGATGTGTCTATGGG 58.696 50.000 6.15 0.00 37.58 4.00
4682 5031 4.285517 CCTCAGATGTGTCTATGGGCTAAT 59.714 45.833 0.00 0.00 32.09 1.73
4691 5040 5.180117 GTGTCTATGGGCTAATAACTGCATG 59.820 44.000 0.00 0.00 0.00 4.06
4869 5218 9.905713 TTTCTGCTGAGGTACTTTTATCATATT 57.094 29.630 0.00 0.00 41.55 1.28
4870 5219 8.893219 TCTGCTGAGGTACTTTTATCATATTG 57.107 34.615 0.00 0.00 41.55 1.90
4871 5220 8.704668 TCTGCTGAGGTACTTTTATCATATTGA 58.295 33.333 0.00 0.00 41.55 2.57
4872 5221 9.330063 CTGCTGAGGTACTTTTATCATATTGAA 57.670 33.333 0.00 0.00 41.55 2.69
4873 5222 9.851686 TGCTGAGGTACTTTTATCATATTGAAT 57.148 29.630 0.00 0.00 41.55 2.57
4966 5315 3.058224 GGTGCATTGTGTTCCTGTTAGAC 60.058 47.826 0.00 0.00 0.00 2.59
4967 5316 3.563808 GTGCATTGTGTTCCTGTTAGACA 59.436 43.478 0.00 0.00 0.00 3.41
4968 5317 3.814842 TGCATTGTGTTCCTGTTAGACAG 59.185 43.478 1.14 1.14 45.53 3.51
5045 5394 9.453572 AATGAATCTCTTTATGTTGTTGAGCTA 57.546 29.630 0.00 0.00 0.00 3.32
5086 5436 3.462205 TGCTCCCTATACAGACAGGTAGA 59.538 47.826 0.00 0.00 0.00 2.59
5110 5460 0.895530 CTTCCCTTGCTGAGTCCGTA 59.104 55.000 0.00 0.00 0.00 4.02
5152 5503 2.989909 TGATCATTTCGGTCACAGCAT 58.010 42.857 0.00 0.00 0.00 3.79
5256 5607 2.225467 AGCCAGCAACTTCTGAAGAAC 58.775 47.619 23.36 11.66 36.19 3.01
5331 5683 3.816480 GCCCCCTACCTTTTTCTAGCAAA 60.816 47.826 0.00 0.00 0.00 3.68
5643 5996 5.186198 AGTTTGATGTATACTGGAAGGCAC 58.814 41.667 4.17 0.00 39.30 5.01
5865 6301 7.147514 TGGTACAGAAGGTTCTAAGTTTACCAA 60.148 37.037 0.00 1.70 35.34 3.67
6148 6584 2.936919 TGGCCTATATCCTGCTTGTG 57.063 50.000 3.32 0.00 0.00 3.33
6167 6603 2.752903 GTGTTAACCGGCCAATCATCTT 59.247 45.455 0.00 0.00 0.00 2.40
6255 6691 2.232696 TGTGTTCTCCCATTCGATCGAA 59.767 45.455 30.83 30.83 38.59 3.71
6264 6700 2.866762 CCATTCGATCGAACTTCTTCCC 59.133 50.000 31.27 0.00 36.91 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.914644 TAGCCTTTGCAGAGCCAGAT 59.085 50.000 0.00 0.00 41.13 2.90
23 24 0.251354 TCTAGCCTTTGCAGAGCCAG 59.749 55.000 0.00 0.00 41.13 4.85
31 32 4.494855 CGTTGCTTTCTATCTAGCCTTTGC 60.495 45.833 0.00 0.00 36.56 3.68
145 148 0.390340 GAGAGCTCATGCGTTGGTGA 60.390 55.000 17.77 0.00 45.42 4.02
177 180 2.505337 TATGTGTGTCGCGACCGC 60.505 61.111 34.34 28.82 37.85 5.68
178 181 2.505498 GCTATGTGTGTCGCGACCG 61.505 63.158 34.34 15.21 0.00 4.79
264 269 4.202131 ACGGCCGTTTATCTTTTTCCAAAA 60.202 37.500 28.70 0.00 0.00 2.44
274 279 0.813184 TTCTCGACGGCCGTTTATCT 59.187 50.000 34.65 8.11 39.75 1.98
323 333 9.378551 TGTCAAATTATTAGAAAGCTGTATCGT 57.621 29.630 0.00 0.00 0.00 3.73
359 370 4.458295 TCGTGTCTTTGGGTGTTTTGTTTA 59.542 37.500 0.00 0.00 0.00 2.01
395 406 1.729284 TGGTCCTTTTATTCGACGGC 58.271 50.000 0.00 0.00 0.00 5.68
397 408 4.142966 GGAGTTTGGTCCTTTTATTCGACG 60.143 45.833 0.00 0.00 33.30 5.12
404 415 4.426736 AAGTCGGAGTTTGGTCCTTTTA 57.573 40.909 0.00 0.00 34.00 1.52
462 482 2.776312 TCCGCAGATCATTCGTACTC 57.224 50.000 0.00 0.00 0.00 2.59
480 500 3.654414 GTGTCTTATCCGGATGGTGATC 58.346 50.000 27.55 14.76 36.30 2.92
729 779 1.264295 GAGAACGTTAGGTGGAGGGT 58.736 55.000 0.00 0.00 0.00 4.34
733 784 1.263356 CTGGGAGAACGTTAGGTGGA 58.737 55.000 0.00 0.00 0.00 4.02
799 854 1.894756 CTAGGACCCGAGAGCGAGG 60.895 68.421 0.00 0.00 40.82 4.63
906 979 3.067040 GGTCAAGAAGGATAGGACTCGAC 59.933 52.174 0.00 0.00 0.00 4.20
917 990 0.036306 GGCGGAAAGGTCAAGAAGGA 59.964 55.000 0.00 0.00 0.00 3.36
1017 1090 2.362760 TTGCCCATCCGCATTGCT 60.363 55.556 7.12 0.00 38.87 3.91
1186 1259 3.515330 CCAGGAAACAATCTTCATGGC 57.485 47.619 4.30 0.00 46.73 4.40
1189 1262 7.362401 CGAAAGAATCCAGGAAACAATCTTCAT 60.362 37.037 0.00 0.00 0.00 2.57
1190 1263 6.072508 CGAAAGAATCCAGGAAACAATCTTCA 60.073 38.462 0.00 0.00 0.00 3.02
1191 1264 6.072452 ACGAAAGAATCCAGGAAACAATCTTC 60.072 38.462 0.00 0.00 0.00 2.87
1193 1266 5.316987 ACGAAAGAATCCAGGAAACAATCT 58.683 37.500 0.00 0.00 0.00 2.40
1198 1280 4.613850 GCAAGACGAAAGAATCCAGGAAAC 60.614 45.833 0.00 0.00 0.00 2.78
1204 1286 5.063438 CGAATAAGCAAGACGAAAGAATCCA 59.937 40.000 0.00 0.00 0.00 3.41
1224 1306 2.258013 CGCCACCACAACCACGAAT 61.258 57.895 0.00 0.00 0.00 3.34
1231 1313 0.878416 TTTATCTGCGCCACCACAAC 59.122 50.000 4.18 0.00 0.00 3.32
1314 1430 0.401395 TGGGGGAGGAGTTGTGAACT 60.401 55.000 0.00 0.00 46.38 3.01
1315 1431 0.476771 TTGGGGGAGGAGTTGTGAAC 59.523 55.000 0.00 0.00 0.00 3.18
1317 1433 1.455822 AATTGGGGGAGGAGTTGTGA 58.544 50.000 0.00 0.00 0.00 3.58
1318 1434 2.309136 AAATTGGGGGAGGAGTTGTG 57.691 50.000 0.00 0.00 0.00 3.33
1319 1435 3.344535 AAAAATTGGGGGAGGAGTTGT 57.655 42.857 0.00 0.00 0.00 3.32
1336 1452 6.945938 TTACCGAACAATCTGAAGGAAAAA 57.054 33.333 0.00 0.00 0.00 1.94
1337 1453 6.945938 TTTACCGAACAATCTGAAGGAAAA 57.054 33.333 0.00 0.00 0.00 2.29
1338 1454 7.519032 AATTTACCGAACAATCTGAAGGAAA 57.481 32.000 0.00 0.00 0.00 3.13
1339 1455 6.128391 CGAATTTACCGAACAATCTGAAGGAA 60.128 38.462 0.00 0.00 0.00 3.36
1340 1456 5.350365 CGAATTTACCGAACAATCTGAAGGA 59.650 40.000 0.00 0.00 0.00 3.36
1343 1459 6.017770 ACAACGAATTTACCGAACAATCTGAA 60.018 34.615 0.00 0.00 0.00 3.02
1344 1460 5.467399 ACAACGAATTTACCGAACAATCTGA 59.533 36.000 0.00 0.00 0.00 3.27
1349 1471 5.738118 AAGACAACGAATTTACCGAACAA 57.262 34.783 0.00 0.00 0.00 2.83
1350 1472 5.738118 AAAGACAACGAATTTACCGAACA 57.262 34.783 0.00 0.00 0.00 3.18
1378 1500 5.906073 ACATTTCAACAAGAAGAAACCAGG 58.094 37.500 0.00 0.00 37.57 4.45
1381 1503 7.010460 CCAAGAACATTTCAACAAGAAGAAACC 59.990 37.037 0.00 0.00 37.57 3.27
1382 1504 7.010460 CCCAAGAACATTTCAACAAGAAGAAAC 59.990 37.037 0.00 0.00 37.57 2.78
1383 1505 7.041107 CCCAAGAACATTTCAACAAGAAGAAA 58.959 34.615 0.00 0.00 37.57 2.52
1385 1507 5.068987 CCCCAAGAACATTTCAACAAGAAGA 59.931 40.000 0.00 0.00 37.57 2.87
1386 1508 5.068987 TCCCCAAGAACATTTCAACAAGAAG 59.931 40.000 0.00 0.00 37.57 2.85
1387 1509 4.959210 TCCCCAAGAACATTTCAACAAGAA 59.041 37.500 0.00 0.00 0.00 2.52
1388 1510 4.541705 TCCCCAAGAACATTTCAACAAGA 58.458 39.130 0.00 0.00 0.00 3.02
1390 1512 3.640967 CCTCCCCAAGAACATTTCAACAA 59.359 43.478 0.00 0.00 0.00 2.83
1391 1513 3.230134 CCTCCCCAAGAACATTTCAACA 58.770 45.455 0.00 0.00 0.00 3.33
1392 1514 2.562738 CCCTCCCCAAGAACATTTCAAC 59.437 50.000 0.00 0.00 0.00 3.18
1393 1515 2.888212 CCCTCCCCAAGAACATTTCAA 58.112 47.619 0.00 0.00 0.00 2.69
1421 1543 3.484208 CCAATCCATTGTGCCTTCGGC 62.484 57.143 0.00 0.00 40.92 5.54
1422 1544 0.457035 CCAATCCATTGTGCCTTCGG 59.543 55.000 0.00 0.00 36.06 4.30
1423 1545 0.457035 CCCAATCCATTGTGCCTTCG 59.543 55.000 0.00 0.00 36.06 3.79
1424 1546 1.560505 ACCCAATCCATTGTGCCTTC 58.439 50.000 0.00 0.00 36.06 3.46
1425 1547 2.042979 AGTACCCAATCCATTGTGCCTT 59.957 45.455 0.00 0.00 36.06 4.35
1426 1548 1.640670 AGTACCCAATCCATTGTGCCT 59.359 47.619 0.00 0.00 36.06 4.75
1427 1549 2.024414 GAGTACCCAATCCATTGTGCC 58.976 52.381 0.00 0.00 36.06 5.01
1428 1550 1.670811 CGAGTACCCAATCCATTGTGC 59.329 52.381 0.00 0.00 36.06 4.57
1429 1551 2.288666 CCGAGTACCCAATCCATTGTG 58.711 52.381 0.00 0.00 36.06 3.33
1430 1552 1.211949 CCCGAGTACCCAATCCATTGT 59.788 52.381 0.00 0.00 36.06 2.71
1431 1553 1.211949 ACCCGAGTACCCAATCCATTG 59.788 52.381 0.00 0.00 37.52 2.82
1432 1554 1.211949 CACCCGAGTACCCAATCCATT 59.788 52.381 0.00 0.00 0.00 3.16
1433 1555 0.837272 CACCCGAGTACCCAATCCAT 59.163 55.000 0.00 0.00 0.00 3.41
1434 1556 1.268992 CCACCCGAGTACCCAATCCA 61.269 60.000 0.00 0.00 0.00 3.41
1435 1557 1.269703 ACCACCCGAGTACCCAATCC 61.270 60.000 0.00 0.00 0.00 3.01
1436 1558 0.616891 AACCACCCGAGTACCCAATC 59.383 55.000 0.00 0.00 0.00 2.67
1437 1559 0.326927 CAACCACCCGAGTACCCAAT 59.673 55.000 0.00 0.00 0.00 3.16
1438 1560 1.756024 CAACCACCCGAGTACCCAA 59.244 57.895 0.00 0.00 0.00 4.12
1439 1561 2.218454 CCAACCACCCGAGTACCCA 61.218 63.158 0.00 0.00 0.00 4.51
1440 1562 2.666812 CCAACCACCCGAGTACCC 59.333 66.667 0.00 0.00 0.00 3.69
1441 1563 2.219164 ACCCAACCACCCGAGTACC 61.219 63.158 0.00 0.00 0.00 3.34
1442 1564 1.004200 CACCCAACCACCCGAGTAC 60.004 63.158 0.00 0.00 0.00 2.73
1443 1565 2.218454 CCACCCAACCACCCGAGTA 61.218 63.158 0.00 0.00 0.00 2.59
1444 1566 3.566210 CCACCCAACCACCCGAGT 61.566 66.667 0.00 0.00 0.00 4.18
1445 1567 4.344865 CCCACCCAACCACCCGAG 62.345 72.222 0.00 0.00 0.00 4.63
1446 1568 4.902258 TCCCACCCAACCACCCGA 62.902 66.667 0.00 0.00 0.00 5.14
1460 1583 1.604278 GATTGGCGCTCATTTACTCCC 59.396 52.381 7.64 0.00 0.00 4.30
1512 1635 1.007502 GCAACTTCAATGGCGCACA 60.008 52.632 10.83 5.20 0.00 4.57
1721 1855 0.038526 TCACCTCGAGCGTTCCTTTC 60.039 55.000 6.99 0.00 0.00 2.62
1824 1969 8.900983 AAAATAGTGCAAGGCAGAAAATTAAA 57.099 26.923 0.00 0.00 40.08 1.52
1940 2085 3.380479 TCTTTGCTGCACGTAACTAGT 57.620 42.857 0.00 0.00 0.00 2.57
1941 2086 4.025229 TGTTTCTTTGCTGCACGTAACTAG 60.025 41.667 0.00 0.00 0.00 2.57
1942 2087 3.872182 TGTTTCTTTGCTGCACGTAACTA 59.128 39.130 0.00 0.00 0.00 2.24
1958 2103 2.722094 TGACAGCCAGTGTTTGTTTCT 58.278 42.857 0.00 0.00 40.56 2.52
1959 2104 3.179048 GTTGACAGCCAGTGTTTGTTTC 58.821 45.455 0.00 0.00 40.56 2.78
1979 2143 2.420547 CCCAATGGACGTCATCAGATGT 60.421 50.000 18.91 0.00 46.42 3.06
2122 2309 1.003718 GCTAACACAGGGCGTCCTT 60.004 57.895 5.38 0.00 42.67 3.36
2173 2368 1.830847 GTTCCGTTTTGGGGGCACT 60.831 57.895 0.00 0.00 38.76 4.40
2178 2373 1.683917 TGATTGTGTTCCGTTTTGGGG 59.316 47.619 0.00 0.00 38.76 4.96
2232 2427 3.044305 GAGCTGCCTGAAACGCGT 61.044 61.111 5.58 5.58 0.00 6.01
2233 2428 3.793144 GGAGCTGCCTGAAACGCG 61.793 66.667 3.53 3.53 0.00 6.01
2272 2467 4.131596 CAGTATGTGATGTGATGATGCCA 58.868 43.478 0.00 0.00 0.00 4.92
2274 2469 5.996669 TTCAGTATGTGATGTGATGATGC 57.003 39.130 0.00 0.00 37.40 3.91
2277 2472 7.094291 TGCATTTTTCAGTATGTGATGTGATGA 60.094 33.333 0.00 0.00 37.40 2.92
2295 2491 4.158025 CCTCTCTCTCTGCATTGCATTTTT 59.842 41.667 12.53 0.00 38.13 1.94
2318 2514 3.501950 CCGCTTTGCTTTGGTTCTTATC 58.498 45.455 0.00 0.00 0.00 1.75
2319 2515 2.352715 GCCGCTTTGCTTTGGTTCTTAT 60.353 45.455 0.00 0.00 0.00 1.73
2320 2516 1.000717 GCCGCTTTGCTTTGGTTCTTA 60.001 47.619 0.00 0.00 0.00 2.10
2321 2517 0.249447 GCCGCTTTGCTTTGGTTCTT 60.249 50.000 0.00 0.00 0.00 2.52
2322 2518 1.109323 AGCCGCTTTGCTTTGGTTCT 61.109 50.000 0.00 0.00 38.85 3.01
2323 2519 0.596082 TAGCCGCTTTGCTTTGGTTC 59.404 50.000 0.00 0.00 42.75 3.62
2324 2520 0.313987 GTAGCCGCTTTGCTTTGGTT 59.686 50.000 0.00 0.00 42.75 3.67
2326 2522 0.387239 GTGTAGCCGCTTTGCTTTGG 60.387 55.000 0.00 0.00 42.75 3.28
2327 2523 0.725784 CGTGTAGCCGCTTTGCTTTG 60.726 55.000 0.00 0.00 42.75 2.77
2328 2524 0.882927 TCGTGTAGCCGCTTTGCTTT 60.883 50.000 0.00 0.00 42.75 3.51
2331 2527 0.577269 CTATCGTGTAGCCGCTTTGC 59.423 55.000 0.00 0.00 0.00 3.68
2336 2532 1.419374 CAATCCTATCGTGTAGCCGC 58.581 55.000 0.00 0.00 0.00 6.53
2412 2608 2.038659 CAACAAGCCTCCCTTTTCCAA 58.961 47.619 0.00 0.00 0.00 3.53
2470 2666 2.027625 ACTAACGCAAGCAGTCGGC 61.028 57.895 0.00 0.00 45.62 5.54
2642 2843 5.058149 TGCAGTTTCATCGTTAATGCATT 57.942 34.783 17.56 17.56 37.28 3.56
2655 2856 4.890158 TCTCCACTAGATTGCAGTTTCA 57.110 40.909 0.00 0.00 0.00 2.69
2715 2918 5.467035 TCCAGGGAAATCACATTTTCAAC 57.533 39.130 0.00 0.00 37.34 3.18
2729 2932 5.068460 CCGTGCAATTTTATATTCCAGGGAA 59.932 40.000 2.75 2.75 38.59 3.97
2736 2939 9.134734 TCTGTTTTTCCGTGCAATTTTATATTC 57.865 29.630 0.00 0.00 0.00 1.75
2739 2942 8.873215 TTTCTGTTTTTCCGTGCAATTTTATA 57.127 26.923 0.00 0.00 0.00 0.98
2816 3026 4.341520 AGGATAAAGTGGACGTGGATAGTC 59.658 45.833 0.00 0.00 37.86 2.59
2827 3037 1.340991 GCTGGCCAAGGATAAAGTGGA 60.341 52.381 7.01 0.00 34.05 4.02
2924 3134 4.464951 TCAAATAGCTCTCCTCCGTTTACA 59.535 41.667 0.00 0.00 0.00 2.41
2970 3180 2.687700 AGCCACAGTGAGAGCATAAG 57.312 50.000 0.62 0.00 0.00 1.73
2971 3181 3.679917 GCTTAGCCACAGTGAGAGCATAA 60.680 47.826 0.62 0.00 0.00 1.90
2974 3184 0.036952 GCTTAGCCACAGTGAGAGCA 60.037 55.000 0.62 0.00 0.00 4.26
2979 3189 0.325933 AGCATGCTTAGCCACAGTGA 59.674 50.000 16.30 0.00 0.00 3.41
2987 3197 1.333881 CGCATCTGAAGCATGCTTAGC 60.334 52.381 32.02 25.53 43.90 3.09
2988 3198 1.938577 ACGCATCTGAAGCATGCTTAG 59.061 47.619 32.02 25.51 43.90 2.18
3002 3212 4.291783 GGAGTGTTAGACATAGACGCATC 58.708 47.826 0.00 0.00 0.00 3.91
3007 3217 6.183360 TGCATTAGGGAGTGTTAGACATAGAC 60.183 42.308 0.00 0.00 0.00 2.59
3010 3220 6.326323 TCATGCATTAGGGAGTGTTAGACATA 59.674 38.462 0.00 0.00 0.00 2.29
3013 3223 4.811557 GTCATGCATTAGGGAGTGTTAGAC 59.188 45.833 0.00 0.00 0.00 2.59
3035 3245 0.895559 GCTTGCCCTTTAGTGCCTGT 60.896 55.000 0.00 0.00 0.00 4.00
3056 3266 2.736826 CCTCCCTTCCTTCTCCGGC 61.737 68.421 0.00 0.00 0.00 6.13
3057 3267 0.617820 TTCCTCCCTTCCTTCTCCGG 60.618 60.000 0.00 0.00 0.00 5.14
3059 3269 2.026729 CAGTTTCCTCCCTTCCTTCTCC 60.027 54.545 0.00 0.00 0.00 3.71
3189 3399 6.097696 TCAGGTCTTAATCACGTATCCATTCA 59.902 38.462 0.00 0.00 0.00 2.57
3337 3548 1.777272 AGGGGAATGATTCAGCTACCC 59.223 52.381 7.56 9.89 37.17 3.69
3409 3620 1.285280 TGTAGTTAGGGCTGCCACAT 58.715 50.000 22.05 8.27 0.00 3.21
3450 3661 2.883386 CAGAGCCAGAGGAAATAATGCC 59.117 50.000 0.00 0.00 0.00 4.40
3513 3724 6.125029 CACCACTATCAGAAATTCCATCCTT 58.875 40.000 0.00 0.00 0.00 3.36
3543 3754 4.065789 CCTTTGTTGAGAAGGACCTACAC 58.934 47.826 0.00 0.00 45.25 2.90
4086 4302 0.240945 GTTGATTGCGGGGTTGTCTG 59.759 55.000 0.00 0.00 0.00 3.51
4334 4683 5.739630 CGTAACATGTTTGTTGTTTGCTGTA 59.260 36.000 17.78 0.00 45.56 2.74
4357 4706 8.122330 TGTCTGCTATTATTTTCTTACATTGCG 58.878 33.333 0.00 0.00 0.00 4.85
4402 4751 2.093306 TAGGACAACAATCAGTGGCG 57.907 50.000 0.00 0.00 0.00 5.69
4419 4768 6.986231 TGCAGTGAGGACATGTACATAATTAG 59.014 38.462 11.55 0.00 0.00 1.73
4444 4793 5.889853 CCCATAATATTGGCATAGCAGATGT 59.110 40.000 0.00 0.00 35.29 3.06
4468 4817 7.582667 ACTACAATGAAGGGCATTTATAACC 57.417 36.000 0.00 0.00 44.68 2.85
4479 4828 3.775316 AGGGTCACTACTACAATGAAGGG 59.225 47.826 0.00 0.00 0.00 3.95
4527 4876 3.668447 TCTTTCTGAGACATCCTGCAAC 58.332 45.455 0.00 0.00 0.00 4.17
4656 5005 3.303938 CCCATAGACACATCTGAGGTCT 58.696 50.000 12.18 12.18 43.76 3.85
4677 5026 9.226345 GAGTTTTAACATCATGCAGTTATTAGC 57.774 33.333 9.61 0.00 31.01 3.09
4682 5031 9.409312 CAATTGAGTTTTAACATCATGCAGTTA 57.591 29.630 0.00 5.92 0.00 2.24
4950 5299 3.552132 TGCTGTCTAACAGGAACACAA 57.448 42.857 9.01 0.00 43.66 3.33
4967 5316 1.619654 TGTTAAGGTGCAGCAATGCT 58.380 45.000 19.63 0.00 40.77 3.79
4968 5317 2.660189 ATGTTAAGGTGCAGCAATGC 57.340 45.000 19.63 0.00 0.00 3.56
4979 5328 3.000041 TCACAGCGCAACTATGTTAAGG 59.000 45.455 11.47 0.00 0.00 2.69
5045 5394 2.887152 GCAGTCTCCACATGACCTTTTT 59.113 45.455 0.00 0.00 35.21 1.94
5086 5436 2.303311 GGACTCAGCAAGGGAAGTAACT 59.697 50.000 0.00 0.00 0.00 2.24
5182 5533 0.596577 CACAGCTGCAGCAAGAATGT 59.403 50.000 38.24 29.13 45.16 2.71
5256 5607 3.791973 AGCTCTTGTCTTATGGAGTCG 57.208 47.619 0.00 0.00 0.00 4.18
5307 5658 0.913924 TAGAAAAAGGTAGGGGGCCG 59.086 55.000 0.00 0.00 0.00 6.13
5331 5683 5.603395 GGATCCTTTTACCTAGTAGGCTCTT 59.397 44.000 16.61 0.00 39.63 2.85
5561 5913 6.491394 TGCACACTTCAACTGTTTACATAAC 58.509 36.000 0.00 0.00 0.00 1.89
5643 5996 4.096081 GCTGAAGGATTTGGACAGAAGATG 59.904 45.833 0.00 0.00 0.00 2.90
5846 6282 9.682465 AGGATTATTGGTAAACTTAGAACCTTC 57.318 33.333 0.00 0.00 34.23 3.46
5865 6301 4.392940 GGCAGTGCTCATGTAAGGATTAT 58.607 43.478 16.11 0.00 30.46 1.28
6148 6584 4.421058 GAAAAGATGATTGGCCGGTTAAC 58.579 43.478 1.90 0.00 0.00 2.01
6167 6603 7.230747 TGAGGAGATCTACAAAATGTTGGAAA 58.769 34.615 7.93 0.00 39.22 3.13
6255 6691 0.178900 AGAGGGTTCCGGGAAGAAGT 60.179 55.000 10.35 0.00 0.00 3.01
6264 6700 2.622436 GAGAACATTCAGAGGGTTCCG 58.378 52.381 10.93 0.00 41.32 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.