Multiple sequence alignment - TraesCS2B01G175700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G175700 chr2B 100.000 3833 0 0 1 3833 150709719 150713551 0.000000e+00 7079
1 TraesCS2B01G175700 chr2A 94.524 3835 132 27 9 3820 98136108 98139887 0.000000e+00 5847
2 TraesCS2B01G175700 chr2D 95.481 2390 80 17 608 2982 99132257 99134633 0.000000e+00 3790
3 TraesCS2B01G175700 chr2D 95.030 845 18 7 2979 3820 99134713 99135536 0.000000e+00 1306
4 TraesCS2B01G175700 chr2D 95.046 323 16 0 234 556 99131542 99131864 3.420000e-140 508
5 TraesCS2B01G175700 chr2D 92.147 191 12 2 87 277 99131367 99131554 2.270000e-67 267
6 TraesCS2B01G175700 chr3D 93.177 894 24 15 1029 1922 284204420 284205276 0.000000e+00 1279
7 TraesCS2B01G175700 chr7B 91.611 894 38 14 1029 1922 29705080 29704224 0.000000e+00 1201
8 TraesCS2B01G175700 chr3B 93.986 582 21 8 1029 1610 245914013 245914580 0.000000e+00 869
9 TraesCS2B01G175700 chr3B 94.979 239 12 0 1684 1922 245921643 245921881 3.620000e-100 375
10 TraesCS2B01G175700 chr6A 89.831 177 7 7 623 799 24832593 24832428 2.320000e-52 217
11 TraesCS2B01G175700 chr6A 92.157 102 7 1 314 414 24832686 24832585 3.990000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G175700 chr2B 150709719 150713551 3832 False 7079.00 7079 100.000 1 3833 1 chr2B.!!$F1 3832
1 TraesCS2B01G175700 chr2A 98136108 98139887 3779 False 5847.00 5847 94.524 9 3820 1 chr2A.!!$F1 3811
2 TraesCS2B01G175700 chr2D 99131367 99135536 4169 False 1467.75 3790 94.426 87 3820 4 chr2D.!!$F1 3733
3 TraesCS2B01G175700 chr3D 284204420 284205276 856 False 1279.00 1279 93.177 1029 1922 1 chr3D.!!$F1 893
4 TraesCS2B01G175700 chr7B 29704224 29705080 856 True 1201.00 1201 91.611 1029 1922 1 chr7B.!!$R1 893
5 TraesCS2B01G175700 chr3B 245914013 245914580 567 False 869.00 869 93.986 1029 1610 1 chr3B.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 1072 0.031043 CTCGCTGCTCCTCATCTCTG 59.969 60.0 0.00 0.0 0.0 3.35 F
695 1073 0.394899 TCGCTGCTCCTCATCTCTGA 60.395 55.0 0.00 0.0 0.0 3.27 F
797 1176 0.527817 GGTCAGGTTGATCGCGGTAG 60.528 60.0 6.13 0.0 0.0 3.18 F
2436 2842 0.178900 AGAGGGTTCCGGGAAGAAGT 60.179 55.0 10.35 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 2101 1.079543 GCAGTCTGGAGCGACACAT 60.080 57.895 1.14 0.0 36.38 3.21 R
1696 2102 1.820010 ATGCAGTCTGGAGCGACACA 61.820 55.000 1.14 0.0 36.38 3.72 R
2714 3120 1.672881 GCTTAATCGCTGAATGGCAGT 59.327 47.619 0.00 0.0 46.62 4.40 R
3581 4091 0.895530 CTTCCCTTGCTGAGTCCGTA 59.104 55.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.669353 ATGCTCATTTTGATATCAACGATTTAC 57.331 29.630 17.76 6.16 35.28 2.01
45 46 8.038351 TGATATCAACGATTTACTTGTGGAAGA 58.962 33.333 1.98 0.00 32.98 2.87
220 222 9.464714 GATCAAGCTAAATACTCGTCTAATTGA 57.535 33.333 0.00 0.00 0.00 2.57
256 288 5.705609 ATAACACCATGAACAAGGAACAC 57.294 39.130 3.07 0.00 0.00 3.32
333 366 4.464008 TGACCTGCTTGAATTTTGACTCT 58.536 39.130 0.00 0.00 0.00 3.24
351 384 1.627329 TCTGCTTGAGGCTTCTGATGT 59.373 47.619 0.00 0.00 42.39 3.06
357 390 0.247736 GAGGCTTCTGATGTGTCGGT 59.752 55.000 0.00 0.00 32.33 4.69
411 444 0.464036 TATACGCAGCCTTCACCTGG 59.536 55.000 0.00 0.00 0.00 4.45
433 466 6.053650 TGGAACAGAAGATTCAGAGCATATG 58.946 40.000 0.00 0.00 0.00 1.78
435 468 7.147672 TGGAACAGAAGATTCAGAGCATATGTA 60.148 37.037 4.29 0.00 0.00 2.29
527 560 1.617850 CGGAGCAAGATCTAGCCAGAT 59.382 52.381 0.00 0.00 44.51 2.90
559 592 3.133014 ATCCTGAGATGACCGCCG 58.867 61.111 0.00 0.00 0.00 6.46
562 595 2.579201 CTGAGATGACCGCCGGTT 59.421 61.111 11.54 0.00 35.25 4.44
583 616 0.108585 GATATTCGCAGGGGGAGCAA 59.891 55.000 0.00 0.00 0.00 3.91
584 617 0.550914 ATATTCGCAGGGGGAGCAAA 59.449 50.000 0.00 0.00 0.00 3.68
586 619 1.852157 ATTCGCAGGGGGAGCAAAGA 61.852 55.000 0.00 0.00 0.00 2.52
694 1072 0.031043 CTCGCTGCTCCTCATCTCTG 59.969 60.000 0.00 0.00 0.00 3.35
695 1073 0.394899 TCGCTGCTCCTCATCTCTGA 60.395 55.000 0.00 0.00 0.00 3.27
696 1074 0.675083 CGCTGCTCCTCATCTCTGAT 59.325 55.000 0.00 0.00 0.00 2.90
697 1075 1.336148 CGCTGCTCCTCATCTCTGATC 60.336 57.143 0.00 0.00 0.00 2.92
698 1076 1.965643 GCTGCTCCTCATCTCTGATCT 59.034 52.381 0.00 0.00 0.00 2.75
699 1077 2.029649 GCTGCTCCTCATCTCTGATCTC 60.030 54.545 0.00 0.00 0.00 2.75
700 1078 3.493334 CTGCTCCTCATCTCTGATCTCT 58.507 50.000 0.00 0.00 0.00 3.10
701 1079 3.489355 TGCTCCTCATCTCTGATCTCTC 58.511 50.000 0.00 0.00 0.00 3.20
702 1080 2.821969 GCTCCTCATCTCTGATCTCTCC 59.178 54.545 0.00 0.00 0.00 3.71
708 1086 2.468301 TCTCTGATCTCTCCCCCTTG 57.532 55.000 0.00 0.00 0.00 3.61
737 1115 3.115892 GATCGCGCCGGACAAACA 61.116 61.111 5.05 0.00 0.00 2.83
738 1116 3.362851 GATCGCGCCGGACAAACAC 62.363 63.158 5.05 0.00 0.00 3.32
739 1117 3.876589 ATCGCGCCGGACAAACACT 62.877 57.895 5.05 0.00 0.00 3.55
740 1118 4.368808 CGCGCCGGACAAACACTG 62.369 66.667 5.05 0.00 0.00 3.66
741 1119 2.970324 GCGCCGGACAAACACTGA 60.970 61.111 5.05 0.00 0.00 3.41
742 1120 2.325082 GCGCCGGACAAACACTGAT 61.325 57.895 5.05 0.00 0.00 2.90
788 1167 4.329545 GCTGGCCGGTCAGGTTGA 62.330 66.667 35.68 0.00 43.70 3.18
794 1173 2.885644 CGGTCAGGTTGATCGCGG 60.886 66.667 6.13 0.00 44.44 6.46
795 1174 2.264794 GGTCAGGTTGATCGCGGT 59.735 61.111 6.13 0.00 0.00 5.68
796 1175 1.514087 GGTCAGGTTGATCGCGGTA 59.486 57.895 6.13 0.00 0.00 4.02
797 1176 0.527817 GGTCAGGTTGATCGCGGTAG 60.528 60.000 6.13 0.00 0.00 3.18
798 1177 0.527817 GTCAGGTTGATCGCGGTAGG 60.528 60.000 6.13 0.00 0.00 3.18
799 1178 1.227263 CAGGTTGATCGCGGTAGGG 60.227 63.158 6.13 0.00 0.00 3.53
1908 2314 0.604780 GCGCTATGCCTGTGATGGAT 60.605 55.000 0.00 0.00 37.76 3.41
2214 2620 0.969409 GGAGCATGCCTTTTGAGCCT 60.969 55.000 15.66 0.00 0.00 4.58
2427 2833 2.622436 GAGAACATTCAGAGGGTTCCG 58.378 52.381 10.93 0.00 41.32 4.30
2436 2842 0.178900 AGAGGGTTCCGGGAAGAAGT 60.179 55.000 10.35 0.00 0.00 3.01
2524 2930 7.230747 TGAGGAGATCTACAAAATGTTGGAAA 58.769 34.615 7.93 0.00 39.22 3.13
2543 2949 4.421058 GAAAAGATGATTGGCCGGTTAAC 58.579 43.478 1.90 0.00 0.00 2.01
2714 3120 2.968574 AGAACCTCAGAGCTTGTGAAGA 59.031 45.455 3.33 0.00 0.00 2.87
2715 3121 2.829741 ACCTCAGAGCTTGTGAAGAC 57.170 50.000 3.33 0.00 0.00 3.01
2716 3122 2.324541 ACCTCAGAGCTTGTGAAGACT 58.675 47.619 3.33 0.00 0.00 3.24
2717 3123 2.036992 ACCTCAGAGCTTGTGAAGACTG 59.963 50.000 3.33 0.00 36.51 3.51
2718 3124 2.067766 CTCAGAGCTTGTGAAGACTGC 58.932 52.381 0.00 0.00 35.76 4.40
2719 3125 1.155042 CAGAGCTTGTGAAGACTGCC 58.845 55.000 0.00 0.00 31.66 4.85
2720 3126 0.761187 AGAGCTTGTGAAGACTGCCA 59.239 50.000 0.00 0.00 0.00 4.92
2721 3127 1.350351 AGAGCTTGTGAAGACTGCCAT 59.650 47.619 0.00 0.00 0.00 4.40
2722 3128 2.157738 GAGCTTGTGAAGACTGCCATT 58.842 47.619 0.00 0.00 0.00 3.16
2723 3129 2.157738 AGCTTGTGAAGACTGCCATTC 58.842 47.619 0.00 0.00 0.00 2.67
2724 3130 1.881973 GCTTGTGAAGACTGCCATTCA 59.118 47.619 0.00 0.00 33.16 2.57
2726 3132 1.527034 TGTGAAGACTGCCATTCAGC 58.473 50.000 0.00 0.00 46.76 4.26
2727 3133 0.445436 GTGAAGACTGCCATTCAGCG 59.555 55.000 0.00 0.00 46.76 5.18
2728 3134 0.321346 TGAAGACTGCCATTCAGCGA 59.679 50.000 0.00 0.00 46.76 4.93
2729 3135 1.065926 TGAAGACTGCCATTCAGCGAT 60.066 47.619 0.00 0.00 46.76 4.58
2730 3136 2.012673 GAAGACTGCCATTCAGCGATT 58.987 47.619 0.00 0.00 46.76 3.34
2731 3137 2.988010 AGACTGCCATTCAGCGATTA 57.012 45.000 0.00 0.00 46.76 1.75
2826 3250 4.392940 GGCAGTGCTCATGTAAGGATTAT 58.607 43.478 16.11 0.00 30.46 1.28
2845 3269 9.682465 AGGATTATTGGTAAACTTAGAACCTTC 57.318 33.333 0.00 0.00 34.23 3.46
3048 3555 4.096081 GCTGAAGGATTTGGACAGAAGATG 59.904 45.833 0.00 0.00 0.00 2.90
3130 3638 6.491394 TGCACACTTCAACTGTTTACATAAC 58.509 36.000 0.00 0.00 0.00 1.89
3360 3868 5.603395 GGATCCTTTTACCTAGTAGGCTCTT 59.397 44.000 16.61 0.00 39.63 2.85
3384 3893 0.913924 TAGAAAAAGGTAGGGGGCCG 59.086 55.000 0.00 0.00 0.00 6.13
3435 3944 3.791973 AGCTCTTGTCTTATGGAGTCG 57.208 47.619 0.00 0.00 0.00 4.18
3509 4018 0.596577 CACAGCTGCAGCAAGAATGT 59.403 50.000 38.24 29.13 45.16 2.71
3605 4115 2.303311 GGACTCAGCAAGGGAAGTAACT 59.697 50.000 0.00 0.00 0.00 2.24
3646 4156 2.887152 GCAGTCTCCACATGACCTTTTT 59.113 45.455 0.00 0.00 35.21 1.94
3712 4222 3.000041 TCACAGCGCAACTATGTTAAGG 59.000 45.455 11.47 0.00 0.00 2.69
3723 4233 2.660189 ATGTTAAGGTGCAGCAATGC 57.340 45.000 19.63 0.00 0.00 3.56
3724 4234 1.619654 TGTTAAGGTGCAGCAATGCT 58.380 45.000 19.63 0.00 40.77 3.79
3741 4251 3.552132 TGCTGTCTAACAGGAACACAA 57.448 42.857 9.01 0.00 43.66 3.33
3782 4293 8.950208 AAGCTGTATTGGATAGTTACTTCTTC 57.050 34.615 0.00 0.00 0.00 2.87
3783 4294 8.312669 AGCTGTATTGGATAGTTACTTCTTCT 57.687 34.615 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.358406 TGATATCAAAATGAGCATAGGTTTGAT 57.642 29.630 18.22 18.22 45.82 2.57
1 2 8.750515 TGATATCAAAATGAGCATAGGTTTGA 57.249 30.769 1.98 9.80 41.12 2.69
2 3 9.241317 GTTGATATCAAAATGAGCATAGGTTTG 57.759 33.333 19.55 0.00 37.63 2.93
3 4 8.131100 CGTTGATATCAAAATGAGCATAGGTTT 58.869 33.333 19.55 0.00 37.63 3.27
4 5 7.498900 TCGTTGATATCAAAATGAGCATAGGTT 59.501 33.333 19.55 0.00 37.63 3.50
5 6 6.992123 TCGTTGATATCAAAATGAGCATAGGT 59.008 34.615 19.55 0.00 37.63 3.08
6 7 7.425577 TCGTTGATATCAAAATGAGCATAGG 57.574 36.000 19.55 0.42 37.63 2.57
7 8 9.888878 AAATCGTTGATATCAAAATGAGCATAG 57.111 29.630 19.55 2.61 37.63 2.23
15 16 9.787532 CCACAAGTAAATCGTTGATATCAAAAT 57.212 29.630 19.55 13.06 37.63 1.82
35 36 4.439700 CCATGCTAATTGCTCTTCCACAAG 60.440 45.833 0.00 0.00 43.37 3.16
45 46 2.025981 TGGAGTCACCATGCTAATTGCT 60.026 45.455 0.00 0.00 44.64 3.91
256 288 5.276489 GGCATCATGATGTTTGTTATTTGCG 60.276 40.000 31.09 6.55 40.80 4.85
357 390 0.106369 AGTCCCATCCCGATCGTGTA 60.106 55.000 15.09 0.00 0.00 2.90
411 444 8.654230 TTACATATGCTCTGAATCTTCTGTTC 57.346 34.615 1.58 0.00 0.00 3.18
433 466 5.800438 GCCAATCTCCGAAATTTGAGTTTAC 59.200 40.000 0.00 0.00 0.00 2.01
435 468 4.280677 TGCCAATCTCCGAAATTTGAGTTT 59.719 37.500 0.00 0.00 0.00 2.66
556 589 1.507141 CCTGCGAATATCCAACCGGC 61.507 60.000 0.00 0.00 0.00 6.13
557 590 0.884704 CCCTGCGAATATCCAACCGG 60.885 60.000 0.00 0.00 0.00 5.28
559 592 0.537371 CCCCCTGCGAATATCCAACC 60.537 60.000 0.00 0.00 0.00 3.77
562 595 1.768684 GCTCCCCCTGCGAATATCCA 61.769 60.000 0.00 0.00 0.00 3.41
583 616 1.229984 CCCCCTTCCTCCCTGTCTT 60.230 63.158 0.00 0.00 0.00 3.01
584 617 2.456840 CCCCCTTCCTCCCTGTCT 59.543 66.667 0.00 0.00 0.00 3.41
639 1017 2.441532 TTCGCTCCCTACTCCCGG 60.442 66.667 0.00 0.00 0.00 5.73
694 1072 0.472044 GGAAGCAAGGGGGAGAGATC 59.528 60.000 0.00 0.00 0.00 2.75
695 1073 0.045469 AGGAAGCAAGGGGGAGAGAT 59.955 55.000 0.00 0.00 0.00 2.75
696 1074 0.618968 GAGGAAGCAAGGGGGAGAGA 60.619 60.000 0.00 0.00 0.00 3.10
697 1075 1.911471 GAGGAAGCAAGGGGGAGAG 59.089 63.158 0.00 0.00 0.00 3.20
698 1076 1.990060 CGAGGAAGCAAGGGGGAGA 60.990 63.158 0.00 0.00 0.00 3.71
699 1077 2.294078 ACGAGGAAGCAAGGGGGAG 61.294 63.158 0.00 0.00 0.00 4.30
700 1078 2.203938 ACGAGGAAGCAAGGGGGA 60.204 61.111 0.00 0.00 0.00 4.81
701 1079 2.045926 CACGAGGAAGCAAGGGGG 60.046 66.667 0.00 0.00 0.00 5.40
702 1080 2.747855 GCACGAGGAAGCAAGGGG 60.748 66.667 0.00 0.00 0.00 4.79
708 1086 3.621394 GCGATCGCACGAGGAAGC 61.621 66.667 33.89 0.18 41.49 3.86
788 1167 2.203596 CCTACCCCCTACCGCGAT 60.204 66.667 8.23 0.00 0.00 4.58
793 1172 3.547513 CTGCGCCTACCCCCTACC 61.548 72.222 4.18 0.00 0.00 3.18
794 1173 4.237207 GCTGCGCCTACCCCCTAC 62.237 72.222 4.18 0.00 0.00 3.18
892 1278 2.746359 GGCGGATCCTGGATCTGG 59.254 66.667 35.10 26.37 43.46 3.86
1416 1822 0.874175 CGTTGCAGAGGAACACGTCA 60.874 55.000 2.49 0.00 0.00 4.35
1695 2101 1.079543 GCAGTCTGGAGCGACACAT 60.080 57.895 1.14 0.00 36.38 3.21
1696 2102 1.820010 ATGCAGTCTGGAGCGACACA 61.820 55.000 1.14 0.00 36.38 3.72
1860 2266 5.063186 CACCTTCAGAGAATTCTCAATGTCG 59.937 44.000 31.79 18.36 45.21 4.35
1908 2314 4.713553 TCATTGAACTCCAAGTAAGCACA 58.286 39.130 0.00 0.00 38.31 4.57
2214 2620 5.185454 AGTGTTCTCCAAATAATCGCATCA 58.815 37.500 0.00 0.00 0.00 3.07
2220 2626 6.325596 GCCAAGAAGTGTTCTCCAAATAATC 58.674 40.000 0.00 0.00 39.61 1.75
2427 2833 2.866762 CCATTCGATCGAACTTCTTCCC 59.133 50.000 31.27 0.00 36.91 3.97
2436 2842 2.232696 TGTGTTCTCCCATTCGATCGAA 59.767 45.455 30.83 30.83 38.59 3.71
2524 2930 2.752903 GTGTTAACCGGCCAATCATCTT 59.247 45.455 0.00 0.00 0.00 2.40
2543 2949 2.936919 TGGCCTATATCCTGCTTGTG 57.063 50.000 3.32 0.00 0.00 3.33
2714 3120 1.672881 GCTTAATCGCTGAATGGCAGT 59.327 47.619 0.00 0.00 46.62 4.40
2716 3122 2.042686 AGCTTAATCGCTGAATGGCA 57.957 45.000 0.00 0.00 39.16 4.92
2717 3123 4.756084 ATAAGCTTAATCGCTGAATGGC 57.244 40.909 10.85 0.00 40.79 4.40
2718 3124 6.820656 AGGATATAAGCTTAATCGCTGAATGG 59.179 38.462 10.85 0.00 40.79 3.16
2719 3125 7.840342 AGGATATAAGCTTAATCGCTGAATG 57.160 36.000 10.85 0.00 40.79 2.67
2720 3126 7.335422 CCAAGGATATAAGCTTAATCGCTGAAT 59.665 37.037 10.85 0.00 40.79 2.57
2721 3127 6.650807 CCAAGGATATAAGCTTAATCGCTGAA 59.349 38.462 10.85 0.00 40.79 3.02
2722 3128 6.166279 CCAAGGATATAAGCTTAATCGCTGA 58.834 40.000 10.85 0.00 40.79 4.26
2723 3129 5.934625 ACCAAGGATATAAGCTTAATCGCTG 59.065 40.000 10.85 13.03 40.79 5.18
2724 3130 6.115448 ACCAAGGATATAAGCTTAATCGCT 57.885 37.500 10.85 10.50 43.31 4.93
2725 3131 9.765795 ATATACCAAGGATATAAGCTTAATCGC 57.234 33.333 10.85 8.81 0.00 4.58
2730 3136 8.692710 CGACCATATACCAAGGATATAAGCTTA 58.307 37.037 8.99 8.99 0.00 3.09
2731 3137 7.556844 CGACCATATACCAAGGATATAAGCTT 58.443 38.462 3.48 3.48 0.00 3.74
2826 3250 7.147514 TGGTACAGAAGGTTCTAAGTTTACCAA 60.148 37.037 0.00 1.70 35.34 3.67
3048 3555 5.186198 AGTTTGATGTATACTGGAAGGCAC 58.814 41.667 4.17 0.00 39.30 5.01
3360 3868 3.816480 GCCCCCTACCTTTTTCTAGCAAA 60.816 47.826 0.00 0.00 0.00 3.68
3435 3944 2.225467 AGCCAGCAACTTCTGAAGAAC 58.775 47.619 23.36 11.66 36.19 3.01
3539 4048 2.989909 TGATCATTTCGGTCACAGCAT 58.010 42.857 0.00 0.00 0.00 3.79
3581 4091 0.895530 CTTCCCTTGCTGAGTCCGTA 59.104 55.000 0.00 0.00 0.00 4.02
3605 4115 3.462205 TGCTCCCTATACAGACAGGTAGA 59.538 47.826 0.00 0.00 0.00 2.59
3646 4156 9.453572 AATGAATCTCTTTATGTTGTTGAGCTA 57.546 29.630 0.00 0.00 0.00 3.32
3723 4233 3.814842 TGCATTGTGTTCCTGTTAGACAG 59.185 43.478 1.14 1.14 45.53 3.51
3724 4234 3.563808 GTGCATTGTGTTCCTGTTAGACA 59.436 43.478 0.00 0.00 0.00 3.41
3725 4235 3.058224 GGTGCATTGTGTTCCTGTTAGAC 60.058 47.826 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.