AutoCloner

Multiple sequence alignment - TraesCS2B01G175000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G175000	chr2B	100.000	3052	0	0	1	3052	150202326	150199275	0.000000e+00	5637.0
1	TraesCS2B01G175000	chr2B	92.877	1446	80	12	909	2351	150142097	150140672	0.000000e+00	2078.0
2	TraesCS2B01G175000	chr2B	89.372	1242	122	4	907	2139	150119191	150117951	0.000000e+00	1554.0
3	TraesCS2B01G175000	chr2B	86.706	1369	156	17	838	2195	150339412	150338059	0.000000e+00	1496.0
4	TraesCS2B01G175000	chr2B	89.655	290	22	4	404	690	150144948	150144664	2.240000e-96	363.0
5	TraesCS2B01G175000	chr2B	83.483	333	39	11	468	786	150339753	150339423	2.300000e-76	296.0
6	TraesCS2B01G175000	chr2B	81.010	416	34	20	1	401	150340238	150339853	3.850000e-74	289.0
7	TraesCS2B01G175000	chr2B	79.562	411	44	23	1	396	150120515	150120130	1.090000e-64	257.0
8	TraesCS2B01G175000	chr2B	85.650	223	22	6	468	680	150388433	150388211	3.060000e-55	226.0
9	TraesCS2B01G175000	chr2B	89.157	166	12	3	677	839	150142378	150142216	5.160000e-48	202.0
10	TraesCS2B01G175000	chr2B	84.500	200	12	10	193	392	150146124	150145944	2.420000e-41	180.0
11	TraesCS2B01G175000	chr2B	81.452	248	16	11	1	236	150394248	150394019	3.130000e-40	176.0
12	TraesCS2B01G175000	chr2B	86.957	115	12	2	716	827	150119335	150119221	3.190000e-25	126.0
13	TraesCS2B01G175000	chr2D	94.982	3029	98	21	1	3019	98674601	98671617	0.000000e+00	4702.0
14	TraesCS2B01G175000	chr2D	91.457	1510	93	16	858	2351	98668434	98666945	0.000000e+00	2041.0
15	TraesCS2B01G175000	chr2D	86.385	1469	167	22	742	2195	98708964	98707514	0.000000e+00	1574.0
16	TraesCS2B01G175000	chr2D	84.674	522	36	20	193	690	98669712	98669211	5.920000e-132	481.0
17	TraesCS2B01G175000	chr2D	78.918	721	65	42	1	680	98709813	98709139	2.830000e-110	409.0
18	TraesCS2B01G175000	chr2D	83.161	386	41	9	2636	3019	98666817	98666454	6.310000e-87	331.0
19	TraesCS2B01G175000	chr2D	89.947	189	15	3	677	861	98668895	98668707	1.090000e-59	241.0
20	TraesCS2B01G175000	chr2D	88.276	145	9	2	691	827	98659907	98659763	1.880000e-37	167.0
21	TraesCS2B01G175000	chr2D	84.706	170	14	8	442	605	98661254	98661091	3.150000e-35	159.0
22	TraesCS2B01G175000	chr2D	89.815	108	9	2	2456	2563	98666943	98666838	1.480000e-28	137.0
23	TraesCS2B01G175000	chr2D	79.851	134	12	7	264	396	98661573	98661454	1.950000e-12	84.2
24	TraesCS2B01G175000	chr2A	90.523	2543	153	36	1	2484	97550465	97547952	0.000000e+00	3280.0
25	TraesCS2B01G175000	chr2A	90.756	2131	118	26	1	2085	97317341	97315244	0.000000e+00	2771.0
26	TraesCS2B01G175000	chr2A	87.556	1342	139	13	909	2234	97308655	97307326	0.000000e+00	1528.0
27	TraesCS2B01G175000	chr2A	87.197	289	27	6	2109	2393	97315066	97314784	1.370000e-83	320.0
28	TraesCS2B01G175000	chr2A	79.279	333	40	20	73	396	97311473	97311161	3.990000e-49	206.0
29	TraesCS2B01G175000	chr2A	86.207	145	12	2	691	827	97308831	97308687	1.900000e-32	150.0
30	TraesCS2B01G175000	chr3B	91.176	102	9	0	2456	2557	383727672	383727571	4.100000e-29	139.0
31	TraesCS2B01G175000	chr3B	97.143	35	1	0	2732	2766	257842955	257842989	3.290000e-05	60.2
32	TraesCS2B01G175000	chr4A	85.455	55	4	2	2729	2780	705641581	705641634	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G175000	chr2B	150199275	150202326	3051	True	5637.000000	5637	100.00000	1	3052	1	chr2B.!!$R1	3051
1	TraesCS2B01G175000	chr2B	150140672	150146124	5452	True	705.750000	2078	89.04725	193	2351	4	chr2B.!!$R5	2158
2	TraesCS2B01G175000	chr2B	150338059	150340238	2179	True	693.666667	1496	83.73300	1	2195	3	chr2B.!!$R6	2194
3	TraesCS2B01G175000	chr2B	150117951	150120515	2564	True	645.666667	1554	85.29700	1	2139	3	chr2B.!!$R4	2138
4	TraesCS2B01G175000	chr2D	98666454	98674601	8147	True	1322.166667	4702	89.00600	1	3019	6	chr2D.!!$R2	3018
5	TraesCS2B01G175000	chr2D	98707514	98709813	2299	True	991.500000	1574	82.65150	1	2195	2	chr2D.!!$R3	2194
6	TraesCS2B01G175000	chr2A	97547952	97550465	2513	True	3280.000000	3280	90.52300	1	2484	1	chr2A.!!$R1	2483
7	TraesCS2B01G175000	chr2A	97307326	97317341	10015	True	995.000000	2771	86.19900	1	2393	5	chr2A.!!$R2	2392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
176	204	0.95104	GGTCGCTGCTTGCAGTTACT	60.951	55.0	21.55	0.00	43.06	2.24	F
1054	5112	0.03659	TCACAATGGCTGCTAGCACA	59.963	50.0	14.93	12.18	44.75	4.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1950	6011	0.107456	ATGTGTGATGGGCTCCGATC	59.893	55.000	4.23	4.23	0.0	3.69	R
3020	7865	1.070758	TCGAGCTTTTCTTGCTGTCCT	59.929	47.619	0.00	0.00	41.3	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
143	163	6.164176	GGTCTAATTTCTGAACTTCGAGGAA	58.836	40.000	0.00	0.00	0.00	3.36
149	169	1.457303	CTGAACTTCGAGGAAGCGTTG	59.543	52.381	0.00	0.00	42.79	4.10
167	195	1.192146	TGAACCCTAGGTCGCTGCTT	61.192	55.000	8.29	0.00	33.12	3.91
170	198	2.265739	CCTAGGTCGCTGCTTGCA	59.734	61.111	0.00	0.00	43.06	4.08
176	204	0.951040	GGTCGCTGCTTGCAGTTACT	60.951	55.000	21.55	0.00	43.06	2.24
177	205	1.671850	GGTCGCTGCTTGCAGTTACTA	60.672	52.381	21.55	3.21	43.06	1.82
178	206	1.390463	GTCGCTGCTTGCAGTTACTAC	59.610	52.381	21.55	10.47	43.06	2.73
179	207	1.272490	TCGCTGCTTGCAGTTACTACT	59.728	47.619	21.55	0.00	43.06	2.57
180	208	2.490509	TCGCTGCTTGCAGTTACTACTA	59.509	45.455	21.55	0.00	43.06	1.82
181	209	2.854777	CGCTGCTTGCAGTTACTACTAG	59.145	50.000	21.55	0.00	43.06	2.57
244	275	1.822990	TCAATACTCTCCTTCGCCGTT	59.177	47.619	0.00	0.00	0.00	4.44
317	358	1.344438	TCTCAAACTGCATCACCGACT	59.656	47.619	0.00	0.00	0.00	4.18
381	422	1.506493	GGCTCCATCTTCTGCATACG	58.494	55.000	0.00	0.00	0.00	3.06
440	1521	7.793902	AGTCACTACTTAAGCAAAAACATACG	58.206	34.615	1.29	0.00	29.00	3.06
579	1711	4.832266	TGGTCAAGTGGCATTCATTAAGTT	59.168	37.500	0.00	0.00	0.00	2.66
606	1738	2.717639	AAAGGATTCCCTGTGATCCG	57.282	50.000	0.00	0.00	43.48	4.18
667	1859	0.951558	GCGTTCTTTCATGTGGTGGT	59.048	50.000	0.00	0.00	0.00	4.16
1054	5112	0.036590	TCACAATGGCTGCTAGCACA	59.963	50.000	14.93	12.18	44.75	4.57
1441	5502	2.286121	GATGGTCAGGGTGGGGGA	60.286	66.667	0.00	0.00	0.00	4.81
1522	5583	2.022718	AAGGAGAAGCTGAGAGTGGT	57.977	50.000	0.00	0.00	0.00	4.16
1537	5598	0.254747	GTGGTATAGCAACTGCCCCA	59.745	55.000	6.12	0.00	43.38	4.96
1619	5680	2.436646	GTGGCGGTGATGGTGGAG	60.437	66.667	0.00	0.00	0.00	3.86
1620	5681	2.927856	TGGCGGTGATGGTGGAGT	60.928	61.111	0.00	0.00	0.00	3.85
1777	5838	4.066139	GGCTCTGGCATTGGGGGT	62.066	66.667	0.00	0.00	40.87	4.95
1801	5862	1.620819	CAGACTGGTAGCACTGGTTCT	59.379	52.381	4.96	0.00	0.00	3.01
1900	5961	0.398522	ATGGTGGAGGTAGCGGATCA	60.399	55.000	0.00	0.00	0.00	2.92
1997	6060	8.816894	TCTAGTCTCTTCATTTTACTGTTCCAT	58.183	33.333	0.00	0.00	0.00	3.41
2254	6491	3.319122	GTCAATTGTTCTGGTTGCCTCTT	59.681	43.478	5.13	0.00	0.00	2.85
2324	6562	3.058501	ACGTGGCGGTTTTTATGAGAAAG	60.059	43.478	0.00	0.00	0.00	2.62
2365	6611	6.594788	AGGACAAATTGCACAAATACAGAT	57.405	33.333	0.00	0.00	0.00	2.90
2370	6616	6.646240	ACAAATTGCACAAATACAGATCCAAC	59.354	34.615	0.00	0.00	0.00	3.77
2376	6622	3.188460	ACAAATACAGATCCAACGCACAC	59.812	43.478	0.00	0.00	0.00	3.82
2379	6625	0.603707	ACAGATCCAACGCACACAGG	60.604	55.000	0.00	0.00	0.00	4.00
2413	7252	4.739716	CGTTGACAATAATTTAGGCATGCC	59.260	41.667	30.12	30.12	0.00	4.40
2466	7306	9.706691	CTGTATCTGGTTATTTTGATATACGGT	57.293	33.333	0.00	0.00	0.00	4.83
2490	7330	4.649267	TGATCCAGGTTGTTTATGGACA	57.351	40.909	0.00	0.00	45.53	4.02
2492	7332	5.009631	TGATCCAGGTTGTTTATGGACAAG	58.990	41.667	0.00	0.00	45.53	3.16
2526	7366	8.021973	GTCGTACTCTTATGTTTCTCTCTCAAA	58.978	37.037	0.00	0.00	0.00	2.69
2539	7379	9.080915	GTTTCTCTCTCAAATTTATTCAATGCC	57.919	33.333	0.00	0.00	0.00	4.40
2600	7440	7.118101	CCACAATATGTTAGTTTGCAAAAGCAT	59.882	33.333	14.67	14.82	0.00	3.79
2605	7445	7.873739	ATGTTAGTTTGCAAAAGCATCTTAC	57.126	32.000	14.67	10.63	0.00	2.34
2606	7446	6.800543	TGTTAGTTTGCAAAAGCATCTTACA	58.199	32.000	14.67	13.00	0.00	2.41
2607	7447	7.432869	TGTTAGTTTGCAAAAGCATCTTACAT	58.567	30.769	14.67	0.00	0.00	2.29
2608	7448	7.925483	TGTTAGTTTGCAAAAGCATCTTACATT	59.075	29.630	14.67	0.00	0.00	2.71
2609	7449	9.405587	GTTAGTTTGCAAAAGCATCTTACATTA	57.594	29.630	14.67	0.00	0.00	1.90
2623	7463	6.001449	TCTTACATTATGGGTTGAAGGGAG	57.999	41.667	0.00	0.00	0.00	4.30
2630	7470	3.782656	TGGGTTGAAGGGAGTAGTTTC	57.217	47.619	0.00	0.00	0.00	2.78
2661	7501	3.845860	AGACAGAGGGAGTAGTTGACAA	58.154	45.455	0.00	0.00	0.00	3.18
2682	7522	7.067981	TGACAATGCAATATTGTATGTGGCTAA	59.932	33.333	18.24	5.53	41.76	3.09
2780	7620	9.453325	GTGGTTTTAGTTTGAATTATGAAACGA	57.547	29.630	0.00	0.00	37.19	3.85
2784	7624	9.737427	TTTTAGTTTGAATTATGAAACGAAGCA	57.263	25.926	0.00	0.00	37.19	3.91
2829	7669	4.675029	AACGGCCGGGTCGAAGTG	62.675	66.667	29.91	0.00	33.65	3.16
2979	7820	9.772973	ACAAAAGTCCCCTTTTTATTTTATGAC	57.227	29.630	0.00	0.00	46.27	3.06
2980	7821	9.771534	CAAAAGTCCCCTTTTTATTTTATGACA	57.228	29.630	0.00	0.00	46.27	3.58
3023	7868	7.539034	TGCTTATAGTGCATCATACTTAGGA	57.461	36.000	0.00	0.00	35.31	2.94
3025	7870	7.015195	TGCTTATAGTGCATCATACTTAGGACA	59.985	37.037	0.00	0.00	35.31	4.02
3026	7871	7.543868	GCTTATAGTGCATCATACTTAGGACAG	59.456	40.741	0.00	0.00	0.00	3.51
3027	7872	4.065321	AGTGCATCATACTTAGGACAGC	57.935	45.455	0.00	0.00	0.00	4.40
3028	7873	3.452264	AGTGCATCATACTTAGGACAGCA	59.548	43.478	0.00	0.00	31.18	4.41
3029	7874	4.080919	AGTGCATCATACTTAGGACAGCAA	60.081	41.667	0.00	0.00	34.03	3.91
3030	7875	4.272018	GTGCATCATACTTAGGACAGCAAG	59.728	45.833	0.00	0.00	34.03	4.01
3031	7876	4.162131	TGCATCATACTTAGGACAGCAAGA	59.838	41.667	0.00	0.00	30.88	3.02
3032	7877	5.118990	GCATCATACTTAGGACAGCAAGAA	58.881	41.667	0.00	0.00	0.00	2.52
3033	7878	5.586243	GCATCATACTTAGGACAGCAAGAAA	59.414	40.000	0.00	0.00	0.00	2.52
3034	7879	6.094048	GCATCATACTTAGGACAGCAAGAAAA	59.906	38.462	0.00	0.00	0.00	2.29
3035	7880	7.678218	GCATCATACTTAGGACAGCAAGAAAAG	60.678	40.741	0.00	0.00	0.00	2.27
3036	7881	5.643777	TCATACTTAGGACAGCAAGAAAAGC	59.356	40.000	0.00	0.00	0.00	3.51
3038	7883	4.068599	ACTTAGGACAGCAAGAAAAGCTC	58.931	43.478	0.00	0.00	41.14	4.09
3041	7886	1.873591	GGACAGCAAGAAAAGCTCGAA	59.126	47.619	0.00	0.00	41.14	3.71
3042	7887	2.290641	GGACAGCAAGAAAAGCTCGAAA	59.709	45.455	0.00	0.00	41.14	3.46
3044	7889	2.945668	ACAGCAAGAAAAGCTCGAAACT	59.054	40.909	0.00	0.00	41.14	2.66
3045	7890	3.002759	ACAGCAAGAAAAGCTCGAAACTC	59.997	43.478	0.00	0.00	41.14	3.01
3046	7891	2.221981	AGCAAGAAAAGCTCGAAACTCG	59.778	45.455	0.00	0.00	38.01	4.18
3048	7893	3.535860	CAAGAAAAGCTCGAAACTCGTG	58.464	45.455	0.00	0.00	41.35	4.35
3050	7895	3.053455	AGAAAAGCTCGAAACTCGTGAG	58.947	45.455	2.57	0.00	41.35	3.51

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
117	137	4.828829	TCGAAGTTCAGAAATTAGACCCC	58.171	43.478	3.32	0.00	0.00	4.95
118	138	4.870991	CCTCGAAGTTCAGAAATTAGACCC	59.129	45.833	3.32	0.00	0.00	4.46
143	163	1.590147	CGACCTAGGGTTCAACGCT	59.410	57.895	14.81	12.38	44.07	5.07
149	169	0.741221	CAAGCAGCGACCTAGGGTTC	60.741	60.000	14.81	1.01	35.25	3.62
167	195	7.934855	AAAGCTAGTACTAGTAGTAACTGCA	57.065	36.000	26.76	0.00	36.36	4.41
176	204	8.781951	TCCTAGGGTTTAAAGCTAGTACTAGTA	58.218	37.037	26.76	12.04	35.65	1.82
177	205	7.646884	TCCTAGGGTTTAAAGCTAGTACTAGT	58.353	38.462	26.76	12.96	35.65	2.57
178	206	7.779326	ACTCCTAGGGTTTAAAGCTAGTACTAG	59.221	40.741	23.25	23.25	36.29	2.57
179	207	7.646884	ACTCCTAGGGTTTAAAGCTAGTACTA	58.353	38.462	16.40	1.89	0.00	1.82
180	208	6.501237	ACTCCTAGGGTTTAAAGCTAGTACT	58.499	40.000	16.40	0.00	0.00	2.73
181	209	6.788598	ACTCCTAGGGTTTAAAGCTAGTAC	57.211	41.667	16.40	0.41	0.00	2.73
228	259	1.474077	GGTAAACGGCGAAGGAGAGTA	59.526	52.381	16.62	0.00	0.00	2.59
244	275	7.201974	GCCACTAGGTGAGTAATCTTATGGTAA	60.202	40.741	0.00	0.00	35.64	2.85
317	358	0.163788	GTTCTTCGTCGTCGTCCGTA	59.836	55.000	1.33	0.00	37.94	4.02
381	422	1.338200	ACCGAGAACCACATGAGCTTC	60.338	52.381	0.00	0.00	0.00	3.86
579	1711	4.081406	CACAGGGAATCCTTTGACATTGA	58.919	43.478	10.41	0.00	42.06	2.57
606	1738	1.237285	ACGCATGAACTGGAAGCCAC	61.237	55.000	0.00	0.00	37.60	5.01
689	4506	6.639123	AGATTCCATCTCCTGACAGACAGATA	60.639	42.308	13.61	3.48	41.40	1.98
801	4744	2.227149	GCATGCATCGATCAGGCAAATA	59.773	45.455	21.31	0.00	41.43	1.40
1411	5472	1.339535	TGACCATCAGCGTTGGCATAA	60.340	47.619	0.00	0.00	43.41	1.90
1441	5502	3.889692	CCACCACCTGCACCACCT	61.890	66.667	0.00	0.00	0.00	4.00
1522	5583	0.181114	CAGCTGGGGCAGTTGCTATA	59.819	55.000	5.57	0.00	36.07	1.31
1619	5680	1.173913	GCACCATTACCACCTCCAAC	58.826	55.000	0.00	0.00	0.00	3.77
1620	5681	1.072266	AGCACCATTACCACCTCCAA	58.928	50.000	0.00	0.00	0.00	3.53
1777	5838	0.969149	CAGTGCTACCAGTCTGTCCA	59.031	55.000	0.00	0.00	0.00	4.02
1950	6011	0.107456	ATGTGTGATGGGCTCCGATC	59.893	55.000	4.23	4.23	0.00	3.69
1991	6054	9.474920	TGAAAAGAAACATAAATGACATGGAAC	57.525	29.630	0.00	0.00	0.00	3.62
2005	6068	9.710900	GAAAACCCTATGAATGAAAAGAAACAT	57.289	29.630	0.00	0.00	0.00	2.71
2220	6457	6.095377	CAGAACAATTGACCATTAGCTTTCC	58.905	40.000	13.59	0.00	0.00	3.13
2254	6491	3.593942	TCCCCAACAGAGAAGGAAGTTA	58.406	45.455	0.00	0.00	0.00	2.24
2324	6562	7.803279	TTGTCCTTTTCTTCTTCTTCTTACC	57.197	36.000	0.00	0.00	0.00	2.85
2365	6611	1.346395	ACTAATCCTGTGTGCGTTGGA	59.654	47.619	0.00	0.00	0.00	3.53
2370	6616	2.277084	GGGTTACTAATCCTGTGTGCG	58.723	52.381	0.00	0.00	0.00	5.34
2376	6622	4.196626	TGTCAACGGGTTACTAATCCTG	57.803	45.455	0.00	0.00	36.29	3.86
2413	7252	1.714794	CAAGGTCGTCAAGCCTACAG	58.285	55.000	0.00	0.00	34.15	2.74
2466	7306	5.222027	TGTCCATAAACAACCTGGATCAAGA	60.222	40.000	0.00	0.00	0.00	3.02
2600	7440	5.491078	ACTCCCTTCAACCCATAATGTAAGA	59.509	40.000	0.00	0.00	0.00	2.10
2605	7445	5.373812	ACTACTCCCTTCAACCCATAATG	57.626	43.478	0.00	0.00	0.00	1.90
2606	7446	6.217693	AGAAACTACTCCCTTCAACCCATAAT	59.782	38.462	0.00	0.00	0.00	1.28
2607	7447	5.550403	AGAAACTACTCCCTTCAACCCATAA	59.450	40.000	0.00	0.00	0.00	1.90
2608	7448	5.098663	AGAAACTACTCCCTTCAACCCATA	58.901	41.667	0.00	0.00	0.00	2.74
2609	7449	3.916989	AGAAACTACTCCCTTCAACCCAT	59.083	43.478	0.00	0.00	0.00	4.00
2623	7463	8.245491	CCCTCTGTCTACTCTAAAAGAAACTAC	58.755	40.741	0.00	0.00	0.00	2.73
2630	7470	7.114095	ACTACTCCCTCTGTCTACTCTAAAAG	58.886	42.308	0.00	0.00	0.00	2.27
2661	7501	7.587037	AGTTTAGCCACATACAATATTGCAT	57.413	32.000	15.48	5.30	0.00	3.96
2682	7522	1.678728	CCACGGTGGTGCATCATAGTT	60.679	52.381	19.15	0.00	43.00	2.24
2726	7566	9.762381	ACAAAAATTATGGAATAGAGGGTACAA	57.238	29.630	0.00	0.00	0.00	2.41
2730	7570	7.067008	CACGACAAAAATTATGGAATAGAGGGT	59.933	37.037	0.00	0.00	0.00	4.34
2780	7620	4.520492	CCTGACCTTGTTCAATACTTGCTT	59.480	41.667	0.00	0.00	0.00	3.91
2784	7624	7.057894	TGTAAACCTGACCTTGTTCAATACTT	58.942	34.615	0.00	0.00	0.00	2.24
2829	7669	6.879458	AGTGTAGTAATGACTTCATTTGGTCC	59.121	38.462	9.68	0.00	43.48	4.46
2979	7820	2.036958	TCCACATATTTGGACGGCTG	57.963	50.000	6.50	0.00	41.00	4.85
3014	7859	5.810095	AGCTTTTCTTGCTGTCCTAAGTAT	58.190	37.500	0.00	0.00	39.56	2.12
3019	7864	2.299013	TCGAGCTTTTCTTGCTGTCCTA	59.701	45.455	0.00	0.00	41.30	2.94
3020	7865	1.070758	TCGAGCTTTTCTTGCTGTCCT	59.929	47.619	0.00	0.00	41.30	3.85
3021	7866	1.512926	TCGAGCTTTTCTTGCTGTCC	58.487	50.000	0.00	0.00	41.30	4.02
3022	7867	3.002759	AGTTTCGAGCTTTTCTTGCTGTC	59.997	43.478	0.00	0.00	41.30	3.51
3023	7868	2.945668	AGTTTCGAGCTTTTCTTGCTGT	59.054	40.909	0.00	0.00	41.30	4.40
3025	7870	2.221981	CGAGTTTCGAGCTTTTCTTGCT	59.778	45.455	0.00	0.00	43.74	3.91
3026	7871	2.032808	ACGAGTTTCGAGCTTTTCTTGC	60.033	45.455	5.38	0.00	43.74	4.01
3027	7872	3.245284	TCACGAGTTTCGAGCTTTTCTTG	59.755	43.478	5.38	0.00	43.74	3.02
3028	7873	3.454375	TCACGAGTTTCGAGCTTTTCTT	58.546	40.909	5.38	0.00	43.74	2.52
3029	7874	3.053455	CTCACGAGTTTCGAGCTTTTCT	58.947	45.455	5.38	0.00	43.74	2.52
3030	7875	2.410389	GCTCACGAGTTTCGAGCTTTTC	60.410	50.000	5.38	0.00	43.74	2.29
3031	7876	1.527311	GCTCACGAGTTTCGAGCTTTT	59.473	47.619	5.38	0.00	43.74	2.27
3032	7877	1.140816	GCTCACGAGTTTCGAGCTTT	58.859	50.000	5.38	0.00	43.74	3.51
3033	7878	2.815722	GCTCACGAGTTTCGAGCTT	58.184	52.632	5.38	0.00	43.74	3.74
3034	7879	4.561731	GCTCACGAGTTTCGAGCT	57.438	55.556	5.38	0.00	43.74	4.09

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.