Multiple sequence alignment - TraesCS2B01G174200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G174200 chr2B 100.000 3693 0 0 1 3693 148399928 148403620 0.000000e+00 6820.0
1 TraesCS2B01G174200 chr2B 100.000 1408 0 0 4054 5461 148403981 148405388 0.000000e+00 2601.0
2 TraesCS2B01G174200 chr2B 99.324 444 2 1 5019 5461 184641447 184641004 0.000000e+00 802.0
3 TraesCS2B01G174200 chr2B 99.522 209 1 0 4822 5030 184651604 184651396 1.110000e-101 381.0
4 TraesCS2B01G174200 chr2B 97.222 36 0 1 5059 5093 148404951 148404986 5.910000e-05 60.2
5 TraesCS2B01G174200 chr2B 97.222 36 0 1 5024 5059 148404986 148405020 5.910000e-05 60.2
6 TraesCS2B01G174200 chr2B 97.222 36 0 1 5024 5059 184641406 184641372 5.910000e-05 60.2
7 TraesCS2B01G174200 chr2D 89.673 1772 129 27 805 2539 97273046 97274800 0.000000e+00 2209.0
8 TraesCS2B01G174200 chr2D 96.574 613 15 5 3009 3616 97275192 97275803 0.000000e+00 1011.0
9 TraesCS2B01G174200 chr2D 88.466 841 78 10 1709 2539 44656899 44657730 0.000000e+00 998.0
10 TraesCS2B01G174200 chr2D 95.281 445 19 1 2566 3008 97274786 97275230 0.000000e+00 704.0
11 TraesCS2B01G174200 chr2D 91.075 493 33 9 4069 4551 97275905 97276396 0.000000e+00 656.0
12 TraesCS2B01G174200 chr2D 91.685 445 29 4 2566 3008 44657716 44658154 1.300000e-170 610.0
13 TraesCS2B01G174200 chr2D 82.947 475 67 10 167 628 97272527 97273000 3.040000e-112 416.0
14 TraesCS2B01G174200 chr2D 95.679 162 7 0 4662 4823 97276393 97276554 1.510000e-65 261.0
15 TraesCS2B01G174200 chr2D 79.508 122 17 4 689 803 537183537 537183657 4.530000e-11 80.5
16 TraesCS2B01G174200 chr2D 96.875 32 1 0 3662 3693 97275800 97275831 3.000000e-03 54.7
17 TraesCS2B01G174200 chr2A 89.812 1698 112 32 869 2539 96071006 96072669 0.000000e+00 2121.0
18 TraesCS2B01G174200 chr2A 91.775 693 34 7 3009 3685 96073058 96073743 0.000000e+00 942.0
19 TraesCS2B01G174200 chr2A 93.258 445 25 3 2566 3008 96072655 96073096 0.000000e+00 651.0
20 TraesCS2B01G174200 chr2A 90.121 496 29 8 4076 4551 96073954 96074449 1.290000e-175 627.0
21 TraesCS2B01G174200 chr2A 95.480 354 14 1 5108 5461 10554191 10553840 1.030000e-156 564.0
22 TraesCS2B01G174200 chr2A 90.367 218 12 2 4822 5030 10579524 10579307 1.500000e-70 278.0
23 TraesCS2B01G174200 chr2A 98.333 120 2 0 4547 4666 435799806 435799687 1.540000e-50 211.0
24 TraesCS2B01G174200 chr2A 94.118 85 4 1 2 86 96069741 96069824 1.600000e-25 128.0
25 TraesCS2B01G174200 chr2A 88.636 88 8 2 84 169 24117403 24117316 7.480000e-19 106.0
26 TraesCS2B01G174200 chr2A 98.148 54 1 0 5062 5115 10577541 10577488 1.620000e-15 95.3
27 TraesCS2B01G174200 chr2A 97.619 42 1 0 805 846 96070966 96071007 7.590000e-09 73.1
28 TraesCS2B01G174200 chr2A 92.308 39 1 1 4787 4823 96074529 96074567 3.000000e-03 54.7
29 TraesCS2B01G174200 chr4B 86.003 1779 214 22 1596 3356 455596181 455597942 0.000000e+00 1873.0
30 TraesCS2B01G174200 chr4D 90.426 846 68 8 1704 2539 493742201 493741359 0.000000e+00 1101.0
31 TraesCS2B01G174200 chr4D 90.787 445 33 4 2566 3008 493741373 493740935 6.090000e-164 588.0
32 TraesCS2B01G174200 chr4D 89.143 350 35 2 3009 3357 417402266 417402613 3.020000e-117 433.0
33 TraesCS2B01G174200 chr3A 89.138 847 76 11 1704 2539 739538689 739539530 0.000000e+00 1040.0
34 TraesCS2B01G174200 chr3A 91.011 445 33 3 2566 3008 739539516 739539955 1.310000e-165 593.0
35 TraesCS2B01G174200 chr3A 90.583 446 33 5 2566 3008 210098003 210098442 2.840000e-162 582.0
36 TraesCS2B01G174200 chr3A 99.138 116 1 0 4548 4663 521303520 521303635 5.540000e-50 209.0
37 TraesCS2B01G174200 chr5B 88.994 845 79 9 1705 2539 588624510 588623670 0.000000e+00 1033.0
38 TraesCS2B01G174200 chr5B 90.562 445 33 5 2566 3008 588623684 588623247 1.020000e-161 580.0
39 TraesCS2B01G174200 chr5B 95.420 131 5 1 4537 4667 659171608 659171479 1.990000e-49 207.0
40 TraesCS2B01G174200 chr5B 80.892 157 23 6 4823 4972 555215072 555214916 3.460000e-22 117.0
41 TraesCS2B01G174200 chr4A 88.889 846 80 9 1704 2539 32698477 32697636 0.000000e+00 1029.0
42 TraesCS2B01G174200 chr4A 96.509 401 14 0 5061 5461 705322965 705323365 0.000000e+00 664.0
43 TraesCS2B01G174200 chr4A 90.562 445 34 4 2566 3008 32697650 32697212 2.840000e-162 582.0
44 TraesCS2B01G174200 chr4A 94.737 209 8 2 4822 5030 705322007 705322212 6.820000e-84 322.0
45 TraesCS2B01G174200 chr4A 96.774 124 3 1 4547 4670 580709456 580709334 7.170000e-49 206.0
46 TraesCS2B01G174200 chr1B 89.074 842 72 11 1709 2539 565983509 565982677 0.000000e+00 1027.0
47 TraesCS2B01G174200 chr1B 92.340 235 16 1 3009 3243 565978292 565978060 3.150000e-87 333.0
48 TraesCS2B01G174200 chr1B 99.145 117 1 0 4548 4664 654278559 654278675 1.540000e-50 211.0
49 TraesCS2B01G174200 chr1B 77.622 143 19 6 671 801 584116154 584116013 2.110000e-09 75.0
50 TraesCS2B01G174200 chr7D 83.670 1041 118 23 2566 3582 120528335 120529347 0.000000e+00 933.0
51 TraesCS2B01G174200 chr7D 84.941 425 49 10 4132 4551 120529772 120530186 3.040000e-112 416.0
52 TraesCS2B01G174200 chr7B 83.723 1026 109 22 2580 3582 82691265 82692255 0.000000e+00 917.0
53 TraesCS2B01G174200 chr7B 94.568 405 21 1 5057 5461 662205391 662205794 4.640000e-175 625.0
54 TraesCS2B01G174200 chr7B 85.412 425 48 9 4132 4551 82692849 82693264 3.910000e-116 429.0
55 TraesCS2B01G174200 chr7B 94.091 220 12 1 4811 5030 662204425 662204643 3.150000e-87 333.0
56 TraesCS2B01G174200 chr7A 83.105 1024 116 25 2580 3582 125469285 125470272 0.000000e+00 880.0
57 TraesCS2B01G174200 chr7A 84.706 425 51 9 4132 4551 125470705 125471120 3.940000e-111 412.0
58 TraesCS2B01G174200 chr7A 84.810 158 21 1 4818 4972 9192344 9192501 7.320000e-34 156.0
59 TraesCS2B01G174200 chr7A 97.059 34 1 0 135 168 125260879 125260846 2.120000e-04 58.4
60 TraesCS2B01G174200 chrUn 99.324 444 2 1 5019 5461 376737160 376736717 0.000000e+00 802.0
61 TraesCS2B01G174200 chrUn 95.261 211 2 2 4820 5030 295942105 295942307 1.470000e-85 327.0
62 TraesCS2B01G174200 chrUn 90.000 70 4 2 100 168 96234323 96234256 2.710000e-13 87.9
63 TraesCS2B01G174200 chrUn 91.111 45 4 0 124 168 29996627 29996583 1.640000e-05 62.1
64 TraesCS2B01G174200 chrUn 97.222 36 0 1 5024 5059 376737119 376737085 5.910000e-05 60.2
65 TraesCS2B01G174200 chr3B 99.324 444 2 1 5019 5461 728488800 728489243 0.000000e+00 802.0
66 TraesCS2B01G174200 chr3B 99.052 211 2 0 4820 5030 728486839 728487049 3.990000e-101 379.0
67 TraesCS2B01G174200 chr3B 97.222 36 0 1 5024 5059 728488841 728488875 5.910000e-05 60.2
68 TraesCS2B01G174200 chr3B 100.000 28 0 0 141 168 659457747 659457720 1.000000e-02 52.8
69 TraesCS2B01G174200 chr1D 97.250 400 11 0 5062 5461 61773730 61773331 0.000000e+00 678.0
70 TraesCS2B01G174200 chr1D 91.121 214 11 1 4825 5030 61775715 61775502 3.220000e-72 283.0
71 TraesCS2B01G174200 chr1D 95.238 42 1 1 5019 5059 61773740 61773699 1.270000e-06 65.8
72 TraesCS2B01G174200 chr1A 97.000 400 12 0 5062 5461 27244384 27244783 0.000000e+00 673.0
73 TraesCS2B01G174200 chr1A 97.521 121 3 0 4548 4668 62352817 62352697 1.990000e-49 207.0
74 TraesCS2B01G174200 chr1A 95.238 42 1 1 5019 5059 27244374 27244415 1.270000e-06 65.8
75 TraesCS2B01G174200 chr1A 100.000 29 0 0 82 110 532232215 532232187 3.000000e-03 54.7
76 TraesCS2B01G174200 chr6B 91.480 446 29 5 2566 3008 151173738 151173299 6.050000e-169 604.0
77 TraesCS2B01G174200 chr6B 88.927 289 30 2 3070 3357 28989211 28989498 6.730000e-94 355.0
78 TraesCS2B01G174200 chr6B 84.106 151 14 6 662 803 346625034 346625183 2.650000e-28 137.0
79 TraesCS2B01G174200 chr6B 76.961 204 20 17 5144 5346 286709040 286708863 2.090000e-14 91.6
80 TraesCS2B01G174200 chr6B 82.955 88 11 3 85 169 335821450 335821536 5.870000e-10 76.8
81 TraesCS2B01G174200 chr5A 87.919 298 33 2 3102 3399 340394963 340394669 1.130000e-91 348.0
82 TraesCS2B01G174200 chr5A 93.478 46 3 0 123 168 618604662 618604707 9.820000e-08 69.4
83 TraesCS2B01G174200 chr6A 99.145 117 1 0 4548 4664 479391287 479391171 1.540000e-50 211.0
84 TraesCS2B01G174200 chr5D 97.581 124 2 1 4547 4670 140016631 140016509 1.540000e-50 211.0
85 TraesCS2B01G174200 chr3D 93.284 134 7 2 4531 4664 279902195 279902326 4.320000e-46 196.0
86 TraesCS2B01G174200 chr6D 94.444 36 2 0 137 172 147123180 147123215 7.640000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G174200 chr2B 148399928 148405388 5460 False 2385.350000 6820 98.611000 1 5461 4 chr2B.!!$F1 5460
1 TraesCS2B01G174200 chr2D 44656899 44658154 1255 False 804.000000 998 90.075500 1709 3008 2 chr2D.!!$F2 1299
2 TraesCS2B01G174200 chr2D 97272527 97276554 4027 False 758.814286 2209 92.586286 167 4823 7 chr2D.!!$F3 4656
3 TraesCS2B01G174200 chr2A 96069741 96074567 4826 False 656.685714 2121 92.715857 2 4823 7 chr2A.!!$F1 4821
4 TraesCS2B01G174200 chr4B 455596181 455597942 1761 False 1873.000000 1873 86.003000 1596 3356 1 chr4B.!!$F1 1760
5 TraesCS2B01G174200 chr4D 493740935 493742201 1266 True 844.500000 1101 90.606500 1704 3008 2 chr4D.!!$R1 1304
6 TraesCS2B01G174200 chr3A 739538689 739539955 1266 False 816.500000 1040 90.074500 1704 3008 2 chr3A.!!$F3 1304
7 TraesCS2B01G174200 chr5B 588623247 588624510 1263 True 806.500000 1033 89.778000 1705 3008 2 chr5B.!!$R3 1303
8 TraesCS2B01G174200 chr4A 32697212 32698477 1265 True 805.500000 1029 89.725500 1704 3008 2 chr4A.!!$R2 1304
9 TraesCS2B01G174200 chr4A 705322007 705323365 1358 False 493.000000 664 95.623000 4822 5461 2 chr4A.!!$F1 639
10 TraesCS2B01G174200 chr1B 565982677 565983509 832 True 1027.000000 1027 89.074000 1709 2539 1 chr1B.!!$R2 830
11 TraesCS2B01G174200 chr7D 120528335 120530186 1851 False 674.500000 933 84.305500 2566 4551 2 chr7D.!!$F1 1985
12 TraesCS2B01G174200 chr7B 82691265 82693264 1999 False 673.000000 917 84.567500 2580 4551 2 chr7B.!!$F1 1971
13 TraesCS2B01G174200 chr7B 662204425 662205794 1369 False 479.000000 625 94.329500 4811 5461 2 chr7B.!!$F2 650
14 TraesCS2B01G174200 chr7A 125469285 125471120 1835 False 646.000000 880 83.905500 2580 4551 2 chr7A.!!$F2 1971
15 TraesCS2B01G174200 chr3B 728486839 728489243 2404 False 413.733333 802 98.532667 4820 5461 3 chr3B.!!$F1 641
16 TraesCS2B01G174200 chr1D 61773331 61775715 2384 True 342.266667 678 94.536333 4825 5461 3 chr1D.!!$R1 636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 1408 0.038166 TCTCAATGGCAAGTGGGTCC 59.962 55.000 0.00 0.0 0.00 4.46 F
1348 2059 0.179073 ACTCTTTGCACTGCGTGACT 60.179 50.000 11.94 0.0 35.23 3.41 F
1743 2456 0.046397 AGGTATCCAAGGCCCCTTCT 59.954 55.000 0.00 0.0 33.42 2.85 F
2638 3399 1.272212 CTGCAACCACAACATAACCCC 59.728 52.381 0.00 0.0 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 2265 1.043816 CTGATCGGACTGGCCATACT 58.956 55.000 5.51 0.0 35.94 2.12 R
2596 3357 2.908916 GCACGTAATGGCCTAAAGGTA 58.091 47.619 3.32 0.0 37.57 3.08 R
3393 4239 0.676782 CTGCTTTACCCCCACTTCGG 60.677 60.000 0.00 0.0 0.00 4.30 R
4548 5787 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.0 46.06 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 8.926092 ATTTTAAAATATACTCCCTCTGCCTC 57.074 34.615 11.76 0.00 0.00 4.70
99 100 7.446106 TTTAAAATATACTCCCTCTGCCTCA 57.554 36.000 0.00 0.00 0.00 3.86
100 101 7.633018 TTAAAATATACTCCCTCTGCCTCAT 57.367 36.000 0.00 0.00 0.00 2.90
101 102 8.736097 TTAAAATATACTCCCTCTGCCTCATA 57.264 34.615 0.00 0.00 0.00 2.15
102 103 7.633018 AAAATATACTCCCTCTGCCTCATAA 57.367 36.000 0.00 0.00 0.00 1.90
103 104 7.821134 AAATATACTCCCTCTGCCTCATAAT 57.179 36.000 0.00 0.00 0.00 1.28
104 105 8.917414 AAATATACTCCCTCTGCCTCATAATA 57.083 34.615 0.00 0.00 0.00 0.98
105 106 9.512748 AAATATACTCCCTCTGCCTCATAATAT 57.487 33.333 0.00 0.00 0.00 1.28
108 109 6.865834 ACTCCCTCTGCCTCATAATATAAG 57.134 41.667 0.00 0.00 0.00 1.73
109 110 6.565974 ACTCCCTCTGCCTCATAATATAAGA 58.434 40.000 0.00 0.00 0.00 2.10
110 111 7.195474 ACTCCCTCTGCCTCATAATATAAGAT 58.805 38.462 0.00 0.00 0.00 2.40
111 112 7.682028 ACTCCCTCTGCCTCATAATATAAGATT 59.318 37.037 0.00 0.00 0.00 2.40
112 113 7.855375 TCCCTCTGCCTCATAATATAAGATTG 58.145 38.462 0.00 0.00 0.00 2.67
113 114 7.459125 TCCCTCTGCCTCATAATATAAGATTGT 59.541 37.037 0.00 0.00 0.00 2.71
114 115 8.105829 CCCTCTGCCTCATAATATAAGATTGTT 58.894 37.037 0.00 0.00 0.00 2.83
115 116 9.512588 CCTCTGCCTCATAATATAAGATTGTTT 57.487 33.333 0.00 0.00 0.00 2.83
132 133 8.539770 AGATTGTTTCTGACACTACACTAATG 57.460 34.615 0.00 0.00 38.18 1.90
133 134 8.150945 AGATTGTTTCTGACACTACACTAATGT 58.849 33.333 0.00 0.00 39.44 2.71
134 135 9.419297 GATTGTTTCTGACACTACACTAATGTA 57.581 33.333 0.00 0.00 37.92 2.29
135 136 9.772973 ATTGTTTCTGACACTACACTAATGTAA 57.227 29.630 0.00 0.00 36.82 2.41
136 137 9.602568 TTGTTTCTGACACTACACTAATGTAAA 57.397 29.630 0.00 0.00 36.82 2.01
137 138 9.602568 TGTTTCTGACACTACACTAATGTAAAA 57.397 29.630 0.00 0.00 35.60 1.52
141 142 8.717821 TCTGACACTACACTAATGTAAAAATGC 58.282 33.333 0.00 0.00 40.84 3.56
142 143 8.615878 TGACACTACACTAATGTAAAAATGCT 57.384 30.769 0.00 0.00 40.84 3.79
143 144 8.717821 TGACACTACACTAATGTAAAAATGCTC 58.282 33.333 0.00 0.00 40.84 4.26
144 145 8.848474 ACACTACACTAATGTAAAAATGCTCT 57.152 30.769 0.00 0.00 40.84 4.09
145 146 9.284968 ACACTACACTAATGTAAAAATGCTCTT 57.715 29.630 0.00 0.00 40.84 2.85
146 147 9.546909 CACTACACTAATGTAAAAATGCTCTTG 57.453 33.333 0.00 0.00 40.84 3.02
147 148 9.284968 ACTACACTAATGTAAAAATGCTCTTGT 57.715 29.630 0.00 0.00 40.84 3.16
156 157 8.815565 TGTAAAAATGCTCTTGTATTATGGGA 57.184 30.769 0.00 0.00 0.00 4.37
157 158 9.420118 TGTAAAAATGCTCTTGTATTATGGGAT 57.580 29.630 0.00 0.00 0.00 3.85
158 159 9.683069 GTAAAAATGCTCTTGTATTATGGGATG 57.317 33.333 0.00 0.00 0.00 3.51
159 160 6.906157 AAATGCTCTTGTATTATGGGATGG 57.094 37.500 0.00 0.00 0.00 3.51
160 161 5.848286 ATGCTCTTGTATTATGGGATGGA 57.152 39.130 0.00 0.00 0.00 3.41
161 162 5.233083 TGCTCTTGTATTATGGGATGGAG 57.767 43.478 0.00 0.00 0.00 3.86
162 163 4.042062 TGCTCTTGTATTATGGGATGGAGG 59.958 45.833 0.00 0.00 0.00 4.30
163 164 4.566488 GCTCTTGTATTATGGGATGGAGGG 60.566 50.000 0.00 0.00 0.00 4.30
164 165 4.838403 TCTTGTATTATGGGATGGAGGGA 58.162 43.478 0.00 0.00 0.00 4.20
165 166 4.846367 TCTTGTATTATGGGATGGAGGGAG 59.154 45.833 0.00 0.00 0.00 4.30
186 187 7.885399 AGGGAGTATTTTATGTCCTCAATATGC 59.115 37.037 0.00 0.00 0.00 3.14
212 214 3.516615 TGTTTGTCTTTCTTTTTGGGCG 58.483 40.909 0.00 0.00 0.00 6.13
215 217 1.679153 TGTCTTTCTTTTTGGGCGGTC 59.321 47.619 0.00 0.00 0.00 4.79
216 218 1.679153 GTCTTTCTTTTTGGGCGGTCA 59.321 47.619 0.00 0.00 0.00 4.02
239 241 9.593134 GTCATGTTCTATTTGACTCTTATGACT 57.407 33.333 0.00 0.00 38.26 3.41
299 306 9.814899 CATGCCAACTTAATGGTCAAAATAATA 57.185 29.630 0.00 0.00 42.75 0.98
301 308 9.249053 TGCCAACTTAATGGTCAAAATAATAGA 57.751 29.630 0.00 0.00 42.75 1.98
302 309 9.516314 GCCAACTTAATGGTCAAAATAATAGAC 57.484 33.333 0.00 0.00 42.75 2.59
315 322 9.932207 TCAAAATAATAGACGTTGACTTTCCTA 57.068 29.630 0.00 0.00 0.00 2.94
321 328 2.921754 GACGTTGACTTTCCTATCACGG 59.078 50.000 0.00 0.00 0.00 4.94
330 337 2.109799 CTATCACGGCAGCCCTGG 59.890 66.667 5.63 0.00 0.00 4.45
354 361 1.823899 GGGCCCCGCTTGTCATAAG 60.824 63.158 12.23 0.00 0.00 1.73
374 381 5.613358 AAGCGTGTTCAAATCCTCTAAAG 57.387 39.130 0.00 0.00 0.00 1.85
376 383 3.188460 GCGTGTTCAAATCCTCTAAAGCA 59.812 43.478 0.00 0.00 0.00 3.91
379 386 6.381801 CGTGTTCAAATCCTCTAAAGCAATT 58.618 36.000 0.00 0.00 0.00 2.32
393 400 9.994432 CTCTAAAGCAATTATCAATCGTTTTCT 57.006 29.630 0.00 0.00 0.00 2.52
548 559 4.380531 CAAGTGAAGCACTCAGGTAAGAA 58.619 43.478 0.00 0.00 44.62 2.52
549 560 4.264460 AGTGAAGCACTCAGGTAAGAAG 57.736 45.455 0.00 0.00 41.21 2.85
550 561 2.739379 GTGAAGCACTCAGGTAAGAAGC 59.261 50.000 0.00 0.00 33.60 3.86
564 1224 2.016905 AGAAGCACCAGTCAGTAGGT 57.983 50.000 0.00 0.00 39.10 3.08
568 1228 0.905357 GCACCAGTCAGTAGGTCCAT 59.095 55.000 0.00 0.00 35.52 3.41
576 1236 5.248640 CAGTCAGTAGGTCCATTTGTCATT 58.751 41.667 0.00 0.00 0.00 2.57
584 1244 3.308832 GGTCCATTTGTCATTGGAGGGTA 60.309 47.826 5.48 0.00 42.55 3.69
587 1247 2.107950 TTTGTCATTGGAGGGTAGCG 57.892 50.000 0.00 0.00 0.00 4.26
598 1258 3.646162 TGGAGGGTAGCGACATAATTCAT 59.354 43.478 0.00 0.00 0.00 2.57
632 1305 1.757682 AGGAACGCTACTCCTCTCAG 58.242 55.000 0.00 0.00 39.16 3.35
661 1337 2.494445 CGAGGTACGCATCCTGCA 59.506 61.111 0.00 0.00 45.36 4.41
662 1338 1.068083 CGAGGTACGCATCCTGCAT 59.932 57.895 0.00 0.00 45.36 3.96
663 1339 0.530650 CGAGGTACGCATCCTGCATT 60.531 55.000 0.00 0.00 45.36 3.56
664 1340 0.940126 GAGGTACGCATCCTGCATTG 59.060 55.000 0.00 0.00 45.36 2.82
665 1341 0.541392 AGGTACGCATCCTGCATTGA 59.459 50.000 0.00 0.00 45.36 2.57
666 1342 0.940126 GGTACGCATCCTGCATTGAG 59.060 55.000 0.00 0.00 45.36 3.02
667 1343 1.656652 GTACGCATCCTGCATTGAGT 58.343 50.000 0.00 0.00 45.36 3.41
668 1344 1.594862 GTACGCATCCTGCATTGAGTC 59.405 52.381 4.54 0.00 45.36 3.36
669 1345 0.251354 ACGCATCCTGCATTGAGTCT 59.749 50.000 0.00 0.00 45.36 3.24
670 1346 1.339438 ACGCATCCTGCATTGAGTCTT 60.339 47.619 0.00 0.00 45.36 3.01
671 1347 1.741706 CGCATCCTGCATTGAGTCTTT 59.258 47.619 0.00 0.00 45.36 2.52
672 1348 2.163010 CGCATCCTGCATTGAGTCTTTT 59.837 45.455 0.00 0.00 45.36 2.27
673 1349 3.508762 GCATCCTGCATTGAGTCTTTTG 58.491 45.455 0.00 0.00 44.26 2.44
674 1350 3.508762 CATCCTGCATTGAGTCTTTTGC 58.491 45.455 0.00 5.81 35.67 3.68
675 1351 1.888512 TCCTGCATTGAGTCTTTTGCC 59.111 47.619 9.14 0.00 34.20 4.52
676 1352 1.067354 CCTGCATTGAGTCTTTTGCCC 60.067 52.381 9.14 0.00 34.20 5.36
677 1353 1.614903 CTGCATTGAGTCTTTTGCCCA 59.385 47.619 9.14 0.00 34.20 5.36
678 1354 2.232941 CTGCATTGAGTCTTTTGCCCAT 59.767 45.455 9.14 0.00 34.20 4.00
679 1355 2.633967 TGCATTGAGTCTTTTGCCCATT 59.366 40.909 9.14 0.00 34.20 3.16
680 1356 3.071312 TGCATTGAGTCTTTTGCCCATTT 59.929 39.130 9.14 0.00 34.20 2.32
681 1357 4.067192 GCATTGAGTCTTTTGCCCATTTT 58.933 39.130 0.00 0.00 0.00 1.82
682 1358 5.221601 TGCATTGAGTCTTTTGCCCATTTTA 60.222 36.000 9.14 0.00 34.20 1.52
683 1359 5.120674 GCATTGAGTCTTTTGCCCATTTTAC 59.879 40.000 0.00 0.00 0.00 2.01
684 1360 5.860941 TTGAGTCTTTTGCCCATTTTACA 57.139 34.783 0.00 0.00 0.00 2.41
685 1361 6.418057 TTGAGTCTTTTGCCCATTTTACAT 57.582 33.333 0.00 0.00 0.00 2.29
686 1362 5.782047 TGAGTCTTTTGCCCATTTTACATG 58.218 37.500 0.00 0.00 0.00 3.21
687 1363 5.538053 TGAGTCTTTTGCCCATTTTACATGA 59.462 36.000 0.00 0.00 0.00 3.07
688 1364 6.029346 AGTCTTTTGCCCATTTTACATGAG 57.971 37.500 0.00 0.00 0.00 2.90
689 1365 5.047092 AGTCTTTTGCCCATTTTACATGAGG 60.047 40.000 0.00 0.00 0.00 3.86
690 1366 4.837860 TCTTTTGCCCATTTTACATGAGGT 59.162 37.500 0.00 0.00 0.00 3.85
691 1367 5.306678 TCTTTTGCCCATTTTACATGAGGTT 59.693 36.000 0.00 0.00 0.00 3.50
692 1368 5.559148 TTTGCCCATTTTACATGAGGTTT 57.441 34.783 0.00 0.00 0.00 3.27
693 1369 4.533919 TGCCCATTTTACATGAGGTTTG 57.466 40.909 0.00 0.00 0.00 2.93
694 1370 4.155709 TGCCCATTTTACATGAGGTTTGA 58.844 39.130 0.00 0.00 0.00 2.69
695 1371 4.776837 TGCCCATTTTACATGAGGTTTGAT 59.223 37.500 0.00 0.00 0.00 2.57
696 1372 5.111293 GCCCATTTTACATGAGGTTTGATG 58.889 41.667 0.00 0.00 0.00 3.07
697 1373 5.105392 GCCCATTTTACATGAGGTTTGATGA 60.105 40.000 0.00 0.00 0.00 2.92
698 1374 6.407299 GCCCATTTTACATGAGGTTTGATGAT 60.407 38.462 0.00 0.00 0.00 2.45
699 1375 7.558604 CCCATTTTACATGAGGTTTGATGATT 58.441 34.615 0.00 0.00 0.00 2.57
700 1376 8.042515 CCCATTTTACATGAGGTTTGATGATTT 58.957 33.333 0.00 0.00 0.00 2.17
701 1377 8.875803 CCATTTTACATGAGGTTTGATGATTTG 58.124 33.333 0.00 0.00 0.00 2.32
702 1378 7.887996 TTTTACATGAGGTTTGATGATTTGC 57.112 32.000 0.00 0.00 0.00 3.68
703 1379 6.839124 TTACATGAGGTTTGATGATTTGCT 57.161 33.333 0.00 0.00 0.00 3.91
704 1380 5.320549 ACATGAGGTTTGATGATTTGCTC 57.679 39.130 0.00 0.00 0.00 4.26
705 1381 4.768448 ACATGAGGTTTGATGATTTGCTCA 59.232 37.500 0.00 0.00 38.53 4.26
706 1382 5.244402 ACATGAGGTTTGATGATTTGCTCAA 59.756 36.000 0.00 0.00 37.44 3.02
707 1383 5.988310 TGAGGTTTGATGATTTGCTCAAT 57.012 34.783 0.00 0.00 37.44 2.57
708 1384 6.349243 TGAGGTTTGATGATTTGCTCAATT 57.651 33.333 0.00 0.00 37.44 2.32
709 1385 7.465353 TGAGGTTTGATGATTTGCTCAATTA 57.535 32.000 0.00 0.00 37.44 1.40
710 1386 8.070034 TGAGGTTTGATGATTTGCTCAATTAT 57.930 30.769 0.00 0.00 37.44 1.28
711 1387 8.533657 TGAGGTTTGATGATTTGCTCAATTATT 58.466 29.630 0.00 0.00 37.44 1.40
712 1388 8.712285 AGGTTTGATGATTTGCTCAATTATTG 57.288 30.769 0.00 0.00 37.44 1.90
713 1389 8.316214 AGGTTTGATGATTTGCTCAATTATTGT 58.684 29.630 4.77 0.00 37.44 2.71
714 1390 8.598075 GGTTTGATGATTTGCTCAATTATTGTC 58.402 33.333 4.77 0.00 37.44 3.18
715 1391 9.362539 GTTTGATGATTTGCTCAATTATTGTCT 57.637 29.630 4.77 0.00 37.44 3.41
716 1392 9.577110 TTTGATGATTTGCTCAATTATTGTCTC 57.423 29.630 4.77 0.00 37.44 3.36
717 1393 8.283699 TGATGATTTGCTCAATTATTGTCTCA 57.716 30.769 4.77 0.00 37.44 3.27
718 1394 8.741841 TGATGATTTGCTCAATTATTGTCTCAA 58.258 29.630 4.77 5.31 37.44 3.02
719 1395 9.745880 GATGATTTGCTCAATTATTGTCTCAAT 57.254 29.630 4.77 0.80 37.44 2.57
720 1396 8.920509 TGATTTGCTCAATTATTGTCTCAATG 57.079 30.769 4.77 0.00 0.00 2.82
721 1397 7.977293 TGATTTGCTCAATTATTGTCTCAATGG 59.023 33.333 4.77 0.00 0.00 3.16
722 1398 5.252969 TGCTCAATTATTGTCTCAATGGC 57.747 39.130 4.77 0.00 0.00 4.40
723 1399 4.705991 TGCTCAATTATTGTCTCAATGGCA 59.294 37.500 4.77 0.00 0.00 4.92
724 1400 5.185442 TGCTCAATTATTGTCTCAATGGCAA 59.815 36.000 4.77 0.00 45.03 4.52
725 1401 5.747197 GCTCAATTATTGTCTCAATGGCAAG 59.253 40.000 4.77 0.00 44.09 4.01
726 1402 6.626623 GCTCAATTATTGTCTCAATGGCAAGT 60.627 38.462 4.77 0.00 44.09 3.16
727 1403 6.623486 TCAATTATTGTCTCAATGGCAAGTG 58.377 36.000 4.77 0.00 44.09 3.16
728 1404 5.587388 ATTATTGTCTCAATGGCAAGTGG 57.413 39.130 0.00 0.00 44.09 4.00
729 1405 1.619654 TTGTCTCAATGGCAAGTGGG 58.380 50.000 0.00 0.00 35.04 4.61
730 1406 0.478072 TGTCTCAATGGCAAGTGGGT 59.522 50.000 0.00 0.00 0.00 4.51
731 1407 1.168714 GTCTCAATGGCAAGTGGGTC 58.831 55.000 0.00 0.00 0.00 4.46
732 1408 0.038166 TCTCAATGGCAAGTGGGTCC 59.962 55.000 0.00 0.00 0.00 4.46
733 1409 1.303236 TCAATGGCAAGTGGGTCCG 60.303 57.895 0.00 0.00 0.00 4.79
734 1410 2.035626 AATGGCAAGTGGGTCCGG 59.964 61.111 0.00 0.00 0.00 5.14
735 1411 4.740822 ATGGCAAGTGGGTCCGGC 62.741 66.667 0.00 0.00 0.00 6.13
739 1415 3.636231 CAAGTGGGTCCGGCTCCA 61.636 66.667 15.44 13.30 0.00 3.86
740 1416 2.610859 AAGTGGGTCCGGCTCCAT 60.611 61.111 16.69 1.80 35.28 3.41
741 1417 2.971598 AAGTGGGTCCGGCTCCATG 61.972 63.158 16.69 0.00 35.28 3.66
752 1428 4.559063 CTCCATGCGGCAGGAGGG 62.559 72.222 27.08 18.19 46.11 4.30
754 1430 4.559063 CCATGCGGCAGGAGGGAG 62.559 72.222 17.22 0.00 42.52 4.30
755 1431 4.559063 CATGCGGCAGGAGGGAGG 62.559 72.222 9.35 0.00 0.00 4.30
759 1435 4.033776 CGGCAGGAGGGAGGCAAA 62.034 66.667 0.00 0.00 0.00 3.68
760 1436 2.685999 GGCAGGAGGGAGGCAAAT 59.314 61.111 0.00 0.00 0.00 2.32
761 1437 1.000866 GGCAGGAGGGAGGCAAATT 59.999 57.895 0.00 0.00 0.00 1.82
762 1438 0.258774 GGCAGGAGGGAGGCAAATTA 59.741 55.000 0.00 0.00 0.00 1.40
763 1439 1.133356 GGCAGGAGGGAGGCAAATTAT 60.133 52.381 0.00 0.00 0.00 1.28
764 1440 2.670939 GCAGGAGGGAGGCAAATTATT 58.329 47.619 0.00 0.00 0.00 1.40
765 1441 3.436470 GGCAGGAGGGAGGCAAATTATTA 60.436 47.826 0.00 0.00 0.00 0.98
766 1442 4.215109 GCAGGAGGGAGGCAAATTATTAA 58.785 43.478 0.00 0.00 0.00 1.40
767 1443 4.649218 GCAGGAGGGAGGCAAATTATTAAA 59.351 41.667 0.00 0.00 0.00 1.52
768 1444 5.305386 GCAGGAGGGAGGCAAATTATTAAAT 59.695 40.000 0.00 0.00 0.00 1.40
769 1445 6.493458 GCAGGAGGGAGGCAAATTATTAAATA 59.507 38.462 0.00 0.00 0.00 1.40
770 1446 7.309438 GCAGGAGGGAGGCAAATTATTAAATAG 60.309 40.741 0.00 0.00 0.00 1.73
771 1447 7.944554 CAGGAGGGAGGCAAATTATTAAATAGA 59.055 37.037 0.00 0.00 0.00 1.98
772 1448 8.166726 AGGAGGGAGGCAAATTATTAAATAGAG 58.833 37.037 0.00 0.00 0.00 2.43
773 1449 8.164070 GGAGGGAGGCAAATTATTAAATAGAGA 58.836 37.037 0.00 0.00 0.00 3.10
774 1450 9.574516 GAGGGAGGCAAATTATTAAATAGAGAA 57.425 33.333 0.00 0.00 0.00 2.87
775 1451 9.579932 AGGGAGGCAAATTATTAAATAGAGAAG 57.420 33.333 0.00 0.00 0.00 2.85
776 1452 9.355916 GGGAGGCAAATTATTAAATAGAGAAGT 57.644 33.333 0.00 0.00 0.00 3.01
788 1464 8.911918 TTAAATAGAGAAGTAAAGTGTGGCAA 57.088 30.769 0.00 0.00 0.00 4.52
789 1465 7.817418 AAATAGAGAAGTAAAGTGTGGCAAA 57.183 32.000 0.00 0.00 0.00 3.68
790 1466 7.817418 AATAGAGAAGTAAAGTGTGGCAAAA 57.183 32.000 0.00 0.00 0.00 2.44
791 1467 5.757850 AGAGAAGTAAAGTGTGGCAAAAG 57.242 39.130 0.00 0.00 0.00 2.27
792 1468 5.437060 AGAGAAGTAAAGTGTGGCAAAAGA 58.563 37.500 0.00 0.00 0.00 2.52
793 1469 6.064717 AGAGAAGTAAAGTGTGGCAAAAGAT 58.935 36.000 0.00 0.00 0.00 2.40
794 1470 6.547510 AGAGAAGTAAAGTGTGGCAAAAGATT 59.452 34.615 0.00 0.00 0.00 2.40
795 1471 6.739112 AGAAGTAAAGTGTGGCAAAAGATTC 58.261 36.000 0.00 0.00 0.00 2.52
796 1472 6.321181 AGAAGTAAAGTGTGGCAAAAGATTCA 59.679 34.615 0.00 0.00 0.00 2.57
797 1473 6.463995 AGTAAAGTGTGGCAAAAGATTCAA 57.536 33.333 0.00 0.00 0.00 2.69
798 1474 7.054491 AGTAAAGTGTGGCAAAAGATTCAAT 57.946 32.000 0.00 0.00 0.00 2.57
799 1475 7.500141 AGTAAAGTGTGGCAAAAGATTCAATT 58.500 30.769 0.00 0.00 0.00 2.32
800 1476 7.986889 AGTAAAGTGTGGCAAAAGATTCAATTT 59.013 29.630 0.00 0.00 0.00 1.82
801 1477 6.849588 AAGTGTGGCAAAAGATTCAATTTC 57.150 33.333 0.00 0.00 0.00 2.17
802 1478 6.165700 AGTGTGGCAAAAGATTCAATTTCT 57.834 33.333 0.00 0.00 0.00 2.52
803 1479 5.987347 AGTGTGGCAAAAGATTCAATTTCTG 59.013 36.000 0.00 0.00 0.00 3.02
807 1483 3.368843 GCAAAAGATTCAATTTCTGGCCG 59.631 43.478 0.00 0.00 0.00 6.13
849 1525 1.405821 CGGCAAGGAGATCTTACGAGT 59.594 52.381 0.00 0.00 37.27 4.18
857 1533 3.749609 GGAGATCTTACGAGTAGAGAGCC 59.250 52.174 0.00 0.00 0.00 4.70
858 1534 3.395639 AGATCTTACGAGTAGAGAGCCG 58.604 50.000 0.00 0.00 0.00 5.52
862 1538 0.457443 TACGAGTAGAGAGCCGTCGA 59.543 55.000 0.00 0.00 36.58 4.20
866 1548 0.938713 AGTAGAGAGCCGTCGAATCG 59.061 55.000 0.00 0.00 0.00 3.34
936 1618 1.086634 GCGTGAGTGCCCAGATCTTC 61.087 60.000 0.00 0.00 0.00 2.87
974 1660 3.134623 TGCTACTCCGATTTCATCCATGT 59.865 43.478 0.00 0.00 0.00 3.21
979 1665 1.143684 CCGATTTCATCCATGTCCCCT 59.856 52.381 0.00 0.00 0.00 4.79
981 1667 2.620115 CGATTTCATCCATGTCCCCTTG 59.380 50.000 0.00 0.00 0.00 3.61
1016 1702 2.494445 CATGGGCGCGACTAGTGA 59.506 61.111 13.91 0.00 0.00 3.41
1017 1703 1.589993 CATGGGCGCGACTAGTGAG 60.590 63.158 13.91 0.00 0.00 3.51
1018 1704 2.052690 ATGGGCGCGACTAGTGAGT 61.053 57.895 13.91 0.00 39.20 3.41
1019 1705 2.202623 GGGCGCGACTAGTGAGTG 60.203 66.667 13.91 1.81 35.45 3.51
1112 1805 1.520120 CGCCGTCTGATGTGATGCT 60.520 57.895 0.00 0.00 0.00 3.79
1115 1808 0.531532 CCGTCTGATGTGATGCTCCC 60.532 60.000 0.00 0.00 0.00 4.30
1155 1860 4.087892 CAGCGTGAGGAGGGTGGG 62.088 72.222 0.00 0.00 32.92 4.61
1157 1862 4.394712 GCGTGAGGAGGGTGGGTG 62.395 72.222 0.00 0.00 0.00 4.61
1158 1863 4.394712 CGTGAGGAGGGTGGGTGC 62.395 72.222 0.00 0.00 0.00 5.01
1159 1864 3.249189 GTGAGGAGGGTGGGTGCA 61.249 66.667 0.00 0.00 0.00 4.57
1160 1865 2.930019 TGAGGAGGGTGGGTGCAG 60.930 66.667 0.00 0.00 0.00 4.41
1187 1892 3.145551 CACGGTAGAGGACGGGGG 61.146 72.222 0.00 0.00 32.75 5.40
1224 1931 3.525537 CAGTCAGCAATCTGTTATCGGT 58.474 45.455 0.00 0.00 41.10 4.69
1231 1938 4.813161 AGCAATCTGTTATCGGTGAAGATG 59.187 41.667 0.00 0.00 32.39 2.90
1233 1940 5.065218 GCAATCTGTTATCGGTGAAGATGTT 59.935 40.000 0.00 0.00 32.39 2.71
1238 1945 4.868171 TGTTATCGGTGAAGATGTTGTAGC 59.132 41.667 0.00 0.00 32.39 3.58
1247 1954 2.611518 AGATGTTGTAGCGCTCAACTC 58.388 47.619 32.72 28.01 43.54 3.01
1265 1972 0.953727 TCATGCTGTTGCCTGTTGTC 59.046 50.000 0.00 0.00 36.44 3.18
1270 1977 1.200020 GCTGTTGCCTGTTGTCCATAC 59.800 52.381 0.00 0.00 0.00 2.39
1271 1978 1.464608 CTGTTGCCTGTTGTCCATACG 59.535 52.381 0.00 0.00 0.00 3.06
1320 2027 5.874895 AGTTTAATTTTAGTCCTGCGTCC 57.125 39.130 0.00 0.00 0.00 4.79
1329 2036 2.594303 CCTGCGTCCTGTTTGCCA 60.594 61.111 0.00 0.00 0.00 4.92
1348 2059 0.179073 ACTCTTTGCACTGCGTGACT 60.179 50.000 11.94 0.00 35.23 3.41
1427 2138 4.118584 GCTGGGCCATGTCCTTTT 57.881 55.556 6.72 0.00 0.00 2.27
1446 2159 2.051345 CCGGTCGCTGCAACAAAC 60.051 61.111 0.00 0.00 0.00 2.93
1484 2197 4.637534 AGTTGCCTACAGTAAAGCATGATG 59.362 41.667 0.00 0.00 34.72 3.07
1500 2213 7.348080 AGCATGATGTTGAATTCTTGATGAT 57.652 32.000 7.05 0.00 0.00 2.45
1507 2220 5.123820 TGTTGAATTCTTGATGATCGGGTTC 59.876 40.000 7.05 0.00 0.00 3.62
1532 2245 7.230712 TCTCTCTAATTTGGTGTTTCCTTTTCC 59.769 37.037 0.00 0.00 37.07 3.13
1584 2297 0.109272 CGATCAGTGTACGCACCAGT 60.109 55.000 9.48 0.00 46.35 4.00
1590 2303 1.601477 TGTACGCACCAGTCCGAGA 60.601 57.895 0.00 0.00 0.00 4.04
1610 2323 0.684479 CATCCTCTGTCCGTCCCTCA 60.684 60.000 0.00 0.00 0.00 3.86
1635 2348 1.067142 TCTTTAGTTCGAGCCGCACAT 60.067 47.619 0.00 0.00 0.00 3.21
1649 2362 2.179589 CGCACATGCTTCACATTTAGC 58.820 47.619 1.82 0.00 36.64 3.09
1720 2433 4.631773 CTGTAGTGGCAGCAGCAT 57.368 55.556 2.65 0.00 44.61 3.79
1728 2441 1.077501 GGCAGCAGCATTGGAGGTA 60.078 57.895 2.65 0.00 44.61 3.08
1743 2456 0.046397 AGGTATCCAAGGCCCCTTCT 59.954 55.000 0.00 0.00 33.42 2.85
1773 2486 4.481112 GCAAACCGCCAGCCATCG 62.481 66.667 0.00 0.00 32.94 3.84
1776 2489 2.040544 AAACCGCCAGCCATCGAAG 61.041 57.895 0.00 0.00 0.00 3.79
1808 2524 7.845066 ACTAATCACCGAGAATTCCTTTTAC 57.155 36.000 0.65 0.00 0.00 2.01
2085 2802 3.089284 CCGGAAAACTAATCTTGGCCTT 58.911 45.455 3.32 0.00 0.00 4.35
2134 2851 3.795688 TCCATTTGAAGAGGCTCTTGT 57.204 42.857 33.05 11.84 36.73 3.16
2135 2852 3.415212 TCCATTTGAAGAGGCTCTTGTG 58.585 45.455 33.05 22.65 36.73 3.33
2165 2882 7.290948 TGGATCTCTTTAATCAAGCCATCTCTA 59.709 37.037 0.00 0.00 31.70 2.43
2319 3040 9.905713 TTCCACAGCTCTGTTATTCTTATATTT 57.094 29.630 0.00 0.00 42.83 1.40
2347 3068 6.338146 TGGTTAGATATGTGCTACTGAACAC 58.662 40.000 0.00 0.00 33.95 3.32
2398 3120 4.062991 GGTTTCACTCGGCTTCTCTTTTA 58.937 43.478 0.00 0.00 0.00 1.52
2475 3201 9.840427 ACAATAAAAACACGATTTCAGAATAGG 57.160 29.630 0.00 0.00 0.00 2.57
2540 3301 9.982651 TGAGACATTAAAATACTATCTACCTGC 57.017 33.333 0.00 0.00 0.00 4.85
2541 3302 9.425577 GAGACATTAAAATACTATCTACCTGCC 57.574 37.037 0.00 0.00 0.00 4.85
2542 3303 8.934697 AGACATTAAAATACTATCTACCTGCCA 58.065 33.333 0.00 0.00 0.00 4.92
2543 3304 9.726438 GACATTAAAATACTATCTACCTGCCAT 57.274 33.333 0.00 0.00 0.00 4.40
2547 3308 9.998106 TTAAAATACTATCTACCTGCCATTCTC 57.002 33.333 0.00 0.00 0.00 2.87
2548 3309 7.618019 AAATACTATCTACCTGCCATTCTCA 57.382 36.000 0.00 0.00 0.00 3.27
2549 3310 7.618019 AATACTATCTACCTGCCATTCTCAA 57.382 36.000 0.00 0.00 0.00 3.02
2550 3311 5.957771 ACTATCTACCTGCCATTCTCAAA 57.042 39.130 0.00 0.00 0.00 2.69
2551 3312 6.313519 ACTATCTACCTGCCATTCTCAAAA 57.686 37.500 0.00 0.00 0.00 2.44
2552 3313 6.721318 ACTATCTACCTGCCATTCTCAAAAA 58.279 36.000 0.00 0.00 0.00 1.94
2638 3399 1.272212 CTGCAACCACAACATAACCCC 59.728 52.381 0.00 0.00 0.00 4.95
2802 3593 7.552459 TCTTGGTTCATCGACATGTTTATCTA 58.448 34.615 0.00 0.00 0.00 1.98
2938 3729 3.114668 TCACTAAACGGCTGCACTAAA 57.885 42.857 0.50 0.00 0.00 1.85
2946 3737 3.522553 ACGGCTGCACTAAAGATACTTC 58.477 45.455 0.50 0.00 0.00 3.01
2975 3766 9.770097 GAATCTGGATTATCAGAACATAGTCAA 57.230 33.333 0.00 0.00 45.54 3.18
2981 3772 9.455847 GGATTATCAGAACATAGTCAAATTTGC 57.544 33.333 13.54 8.67 0.00 3.68
2982 3773 9.455847 GATTATCAGAACATAGTCAAATTTGCC 57.544 33.333 13.54 1.58 0.00 4.52
2983 3774 8.579850 TTATCAGAACATAGTCAAATTTGCCT 57.420 30.769 13.54 10.21 0.00 4.75
2984 3775 6.258230 TCAGAACATAGTCAAATTTGCCTG 57.742 37.500 11.87 9.12 0.00 4.85
2985 3776 5.769662 TCAGAACATAGTCAAATTTGCCTGT 59.230 36.000 11.87 2.18 0.00 4.00
2986 3777 6.072508 TCAGAACATAGTCAAATTTGCCTGTC 60.073 38.462 11.87 4.45 0.00 3.51
2987 3778 5.183904 AGAACATAGTCAAATTTGCCTGTCC 59.816 40.000 11.87 2.04 0.00 4.02
2988 3779 4.666512 ACATAGTCAAATTTGCCTGTCCT 58.333 39.130 11.87 4.36 0.00 3.85
2989 3780 5.079643 ACATAGTCAAATTTGCCTGTCCTT 58.920 37.500 11.87 0.00 0.00 3.36
2990 3781 5.047802 ACATAGTCAAATTTGCCTGTCCTTG 60.048 40.000 11.87 4.72 0.00 3.61
2991 3782 3.565307 AGTCAAATTTGCCTGTCCTTGA 58.435 40.909 13.54 0.00 0.00 3.02
2992 3783 3.960102 AGTCAAATTTGCCTGTCCTTGAA 59.040 39.130 13.54 0.00 0.00 2.69
2993 3784 4.405358 AGTCAAATTTGCCTGTCCTTGAAA 59.595 37.500 13.54 0.00 0.00 2.69
2994 3785 5.104982 AGTCAAATTTGCCTGTCCTTGAAAA 60.105 36.000 13.54 0.00 0.00 2.29
2995 3786 5.584251 GTCAAATTTGCCTGTCCTTGAAAAA 59.416 36.000 13.54 0.00 0.00 1.94
2996 3787 6.260714 GTCAAATTTGCCTGTCCTTGAAAAAT 59.739 34.615 13.54 0.00 0.00 1.82
2997 3788 6.482973 TCAAATTTGCCTGTCCTTGAAAAATC 59.517 34.615 13.54 0.00 0.00 2.17
2998 3789 5.813513 ATTTGCCTGTCCTTGAAAAATCT 57.186 34.783 0.00 0.00 0.00 2.40
2999 3790 5.612725 TTTGCCTGTCCTTGAAAAATCTT 57.387 34.783 0.00 0.00 0.00 2.40
3000 3791 4.853924 TGCCTGTCCTTGAAAAATCTTC 57.146 40.909 0.00 0.00 0.00 2.87
3001 3792 4.214310 TGCCTGTCCTTGAAAAATCTTCA 58.786 39.130 0.00 0.00 0.00 3.02
3002 3793 4.648762 TGCCTGTCCTTGAAAAATCTTCAA 59.351 37.500 0.43 0.43 36.98 2.69
3003 3794 5.128499 TGCCTGTCCTTGAAAAATCTTCAAA 59.872 36.000 1.94 0.00 37.89 2.69
3004 3795 6.183360 TGCCTGTCCTTGAAAAATCTTCAAAT 60.183 34.615 1.94 0.00 37.89 2.32
3005 3796 6.707608 GCCTGTCCTTGAAAAATCTTCAAATT 59.292 34.615 1.94 0.00 37.89 1.82
3006 3797 7.227314 GCCTGTCCTTGAAAAATCTTCAAATTT 59.773 33.333 1.94 0.00 37.89 1.82
3007 3798 9.112725 CCTGTCCTTGAAAAATCTTCAAATTTT 57.887 29.630 1.94 0.00 39.83 1.82
3186 4030 7.394816 TCCCTCGATCTAAAAACAAGAATTCT 58.605 34.615 0.88 0.88 0.00 2.40
3267 4113 6.553476 ACATGCTTAAAGGGTCCTTAGTTTTT 59.447 34.615 2.30 0.00 34.84 1.94
3393 4239 1.566298 ATCCCACAGAGCCCACTTCC 61.566 60.000 0.00 0.00 0.00 3.46
3441 4287 6.204688 CAGTGCAACAAATAAGACAGGTCTAA 59.795 38.462 1.78 0.00 41.43 2.10
3582 4428 6.014669 GCCACTGATCTTGAGGTATATCTCTT 60.015 42.308 14.10 0.00 34.98 2.85
3610 4812 7.512130 TGCATGATAAATAACAGGAGAGTGAT 58.488 34.615 0.00 0.00 0.00 3.06
3689 4901 4.273724 CAGATCCTGAATTCTGTGATGCAG 59.726 45.833 15.81 0.00 38.99 4.41
4106 5318 4.574674 TCATGCTGTAGAAATGAAGGGT 57.425 40.909 0.00 0.00 0.00 4.34
4108 5320 4.701651 TCATGCTGTAGAAATGAAGGGTTG 59.298 41.667 0.00 0.00 0.00 3.77
4110 5322 3.073798 TGCTGTAGAAATGAAGGGTTGGA 59.926 43.478 0.00 0.00 0.00 3.53
4111 5323 3.691609 GCTGTAGAAATGAAGGGTTGGAG 59.308 47.826 0.00 0.00 0.00 3.86
4112 5324 4.565652 GCTGTAGAAATGAAGGGTTGGAGA 60.566 45.833 0.00 0.00 0.00 3.71
4113 5325 5.165961 TGTAGAAATGAAGGGTTGGAGAG 57.834 43.478 0.00 0.00 0.00 3.20
4246 5476 8.651588 CAGCATATTAATCGATTAGGAGTGTTC 58.348 37.037 16.89 4.82 0.00 3.18
4270 5507 7.601856 TCTTAATTTTCAATGCGATGGAGTTT 58.398 30.769 0.00 0.00 0.00 2.66
4340 5578 2.046892 GTGTCCATGCAGGCTCGT 60.047 61.111 0.00 0.00 37.29 4.18
4379 5617 1.017177 TGTTCATCTGTTACGCCGGC 61.017 55.000 19.07 19.07 0.00 6.13
4475 5713 9.553064 GAATTGTCATAATTCTGATACCTCACT 57.447 33.333 0.00 0.00 34.65 3.41
4504 5742 3.466836 TGAATCTTTCGCTGTTCACACT 58.533 40.909 0.00 0.00 0.00 3.55
4525 5764 7.493645 CACACTATGACAGATGATTGTATGTGT 59.506 37.037 0.00 0.00 37.28 3.72
4537 5776 3.557577 TGTATGTGTTCATGCTTGTGC 57.442 42.857 0.00 0.00 37.52 4.57
4548 5787 2.112380 TGCTTGTGCTTAGCTGCATA 57.888 45.000 5.60 0.00 45.23 3.14
4549 5788 1.739466 TGCTTGTGCTTAGCTGCATAC 59.261 47.619 5.60 0.00 45.23 2.39
4550 5789 2.012673 GCTTGTGCTTAGCTGCATACT 58.987 47.619 5.60 0.00 45.23 2.12
4551 5790 2.031437 GCTTGTGCTTAGCTGCATACTC 59.969 50.000 5.60 0.00 45.23 2.59
4552 5791 2.315925 TGTGCTTAGCTGCATACTCC 57.684 50.000 5.60 0.00 45.23 3.85
4553 5792 1.134401 TGTGCTTAGCTGCATACTCCC 60.134 52.381 5.60 0.00 45.23 4.30
4554 5793 1.139853 GTGCTTAGCTGCATACTCCCT 59.860 52.381 5.60 0.00 45.23 4.20
4555 5794 1.414181 TGCTTAGCTGCATACTCCCTC 59.586 52.381 5.60 0.00 38.12 4.30
4556 5795 1.270571 GCTTAGCTGCATACTCCCTCC 60.271 57.143 1.02 0.00 0.00 4.30
4557 5796 1.000283 CTTAGCTGCATACTCCCTCCG 60.000 57.143 1.02 0.00 0.00 4.63
4558 5797 0.106167 TAGCTGCATACTCCCTCCGT 60.106 55.000 1.02 0.00 0.00 4.69
4559 5798 1.068250 GCTGCATACTCCCTCCGTC 59.932 63.158 0.00 0.00 0.00 4.79
4560 5799 1.742768 CTGCATACTCCCTCCGTCC 59.257 63.158 0.00 0.00 0.00 4.79
4561 5800 2.076622 CTGCATACTCCCTCCGTCCG 62.077 65.000 0.00 0.00 0.00 4.79
4562 5801 2.857744 GCATACTCCCTCCGTCCGG 61.858 68.421 0.00 0.00 0.00 5.14
4563 5802 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
4564 5803 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
4565 5804 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
4566 5805 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4567 5806 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4568 5807 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4569 5808 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4570 5809 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4571 5810 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4572 5811 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4573 5812 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4574 5813 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
4575 5814 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
4576 5815 2.537401 CGTCCGGAAATACTTGTCCTC 58.463 52.381 5.23 0.00 0.00 3.71
4577 5816 2.537401 GTCCGGAAATACTTGTCCTCG 58.463 52.381 5.23 0.00 0.00 4.63
4578 5817 2.165030 GTCCGGAAATACTTGTCCTCGA 59.835 50.000 5.23 0.00 0.00 4.04
4579 5818 2.827322 TCCGGAAATACTTGTCCTCGAA 59.173 45.455 0.00 0.00 0.00 3.71
4580 5819 3.258872 TCCGGAAATACTTGTCCTCGAAA 59.741 43.478 0.00 0.00 0.00 3.46
4581 5820 4.081309 TCCGGAAATACTTGTCCTCGAAAT 60.081 41.667 0.00 0.00 0.00 2.17
4582 5821 4.034048 CCGGAAATACTTGTCCTCGAAATG 59.966 45.833 0.00 0.00 0.00 2.32
4583 5822 4.034048 CGGAAATACTTGTCCTCGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
4584 5823 5.183228 GGAAATACTTGTCCTCGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
4585 5824 5.823045 GGAAATACTTGTCCTCGAAATGGAT 59.177 40.000 0.00 0.00 35.87 3.41
4586 5825 6.990349 GGAAATACTTGTCCTCGAAATGGATA 59.010 38.462 0.00 0.00 35.87 2.59
4587 5826 7.497909 GGAAATACTTGTCCTCGAAATGGATAA 59.502 37.037 0.00 0.00 35.87 1.75
4588 5827 8.801882 AAATACTTGTCCTCGAAATGGATAAA 57.198 30.769 3.54 0.00 34.98 1.40
4589 5828 8.801882 AATACTTGTCCTCGAAATGGATAAAA 57.198 30.769 3.54 0.00 34.98 1.52
4590 5829 8.980481 ATACTTGTCCTCGAAATGGATAAAAT 57.020 30.769 3.54 0.00 34.98 1.82
4591 5830 7.088589 ACTTGTCCTCGAAATGGATAAAATG 57.911 36.000 3.54 0.00 34.98 2.32
4592 5831 6.095440 ACTTGTCCTCGAAATGGATAAAATGG 59.905 38.462 3.54 0.00 34.98 3.16
4593 5832 5.750524 TGTCCTCGAAATGGATAAAATGGA 58.249 37.500 0.00 0.00 35.87 3.41
4594 5833 6.364701 TGTCCTCGAAATGGATAAAATGGAT 58.635 36.000 0.00 0.00 35.87 3.41
4595 5834 6.262944 TGTCCTCGAAATGGATAAAATGGATG 59.737 38.462 0.00 0.00 35.87 3.51
4596 5835 6.263168 GTCCTCGAAATGGATAAAATGGATGT 59.737 38.462 0.00 0.00 35.87 3.06
4597 5836 7.444183 GTCCTCGAAATGGATAAAATGGATGTA 59.556 37.037 0.00 0.00 35.87 2.29
4598 5837 8.163408 TCCTCGAAATGGATAAAATGGATGTAT 58.837 33.333 0.00 0.00 0.00 2.29
4599 5838 8.454106 CCTCGAAATGGATAAAATGGATGTATC 58.546 37.037 0.00 0.00 0.00 2.24
4600 5839 9.224267 CTCGAAATGGATAAAATGGATGTATCT 57.776 33.333 0.00 0.00 0.00 1.98
4636 5875 9.838339 ATAAGTCTAGATACAACCATTTTGAGG 57.162 33.333 0.00 0.00 0.00 3.86
4637 5876 7.496346 AGTCTAGATACAACCATTTTGAGGA 57.504 36.000 0.00 0.00 0.00 3.71
4638 5877 7.331791 AGTCTAGATACAACCATTTTGAGGAC 58.668 38.462 0.00 0.00 0.00 3.85
4639 5878 7.038302 AGTCTAGATACAACCATTTTGAGGACA 60.038 37.037 0.00 0.00 0.00 4.02
4640 5879 7.606456 GTCTAGATACAACCATTTTGAGGACAA 59.394 37.037 0.00 0.00 0.00 3.18
4641 5880 6.824305 AGATACAACCATTTTGAGGACAAG 57.176 37.500 0.00 0.00 37.32 3.16
4642 5881 6.306987 AGATACAACCATTTTGAGGACAAGT 58.693 36.000 0.00 0.00 37.32 3.16
4643 5882 7.458397 AGATACAACCATTTTGAGGACAAGTA 58.542 34.615 0.00 0.00 37.32 2.24
4644 5883 8.109634 AGATACAACCATTTTGAGGACAAGTAT 58.890 33.333 0.00 0.00 37.32 2.12
4645 5884 6.976934 ACAACCATTTTGAGGACAAGTATT 57.023 33.333 0.00 0.00 37.32 1.89
4646 5885 7.360113 ACAACCATTTTGAGGACAAGTATTT 57.640 32.000 0.00 0.00 37.32 1.40
4647 5886 7.433680 ACAACCATTTTGAGGACAAGTATTTC 58.566 34.615 0.00 0.00 37.32 2.17
4648 5887 6.590234 ACCATTTTGAGGACAAGTATTTCC 57.410 37.500 0.00 0.00 37.32 3.13
4649 5888 5.183140 ACCATTTTGAGGACAAGTATTTCCG 59.817 40.000 0.00 0.00 36.95 4.30
4650 5889 5.393027 CCATTTTGAGGACAAGTATTTCCGG 60.393 44.000 0.00 0.00 36.95 5.14
4651 5890 4.627284 TTTGAGGACAAGTATTTCCGGA 57.373 40.909 0.00 0.00 36.95 5.14
4652 5891 3.604875 TGAGGACAAGTATTTCCGGAC 57.395 47.619 1.83 0.00 36.95 4.79
4653 5892 2.094390 TGAGGACAAGTATTTCCGGACG 60.094 50.000 1.83 0.00 36.95 4.79
4654 5893 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
4655 5894 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
4656 5895 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4657 5896 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4658 5897 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4659 5898 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4660 5899 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4777 6016 6.531503 TGGTGGTTATGTTTTCTGTTTTCA 57.468 33.333 0.00 0.00 0.00 2.69
4936 6175 6.138761 CAGTGAATTAGTCTTGTGAAAGCAC 58.861 40.000 0.00 0.00 45.35 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 8.736097 TTATGAGGCAGAGGGAGTATATTTTA 57.264 34.615 0.00 0.00 0.00 1.52
86 87 7.673641 ATCTTATATTATGAGGCAGAGGGAG 57.326 40.000 0.00 0.00 0.00 4.30
87 88 7.459125 ACAATCTTATATTATGAGGCAGAGGGA 59.541 37.037 0.00 0.00 0.00 4.20
88 89 7.628234 ACAATCTTATATTATGAGGCAGAGGG 58.372 38.462 0.00 0.00 0.00 4.30
89 90 9.512588 AAACAATCTTATATTATGAGGCAGAGG 57.487 33.333 0.00 0.00 0.00 3.69
106 107 8.993121 CATTAGTGTAGTGTCAGAAACAATCTT 58.007 33.333 0.00 0.00 40.31 2.40
107 108 8.150945 ACATTAGTGTAGTGTCAGAAACAATCT 58.849 33.333 0.00 0.00 36.79 2.40
108 109 8.311650 ACATTAGTGTAGTGTCAGAAACAATC 57.688 34.615 0.00 0.00 36.79 2.67
109 110 9.772973 TTACATTAGTGTAGTGTCAGAAACAAT 57.227 29.630 0.00 0.00 41.56 2.71
110 111 9.602568 TTTACATTAGTGTAGTGTCAGAAACAA 57.397 29.630 0.00 0.00 41.56 2.83
111 112 9.602568 TTTTACATTAGTGTAGTGTCAGAAACA 57.397 29.630 0.00 0.00 41.56 2.83
115 116 8.717821 GCATTTTTACATTAGTGTAGTGTCAGA 58.282 33.333 0.00 0.00 41.56 3.27
116 117 8.721478 AGCATTTTTACATTAGTGTAGTGTCAG 58.279 33.333 0.00 0.00 41.56 3.51
117 118 8.615878 AGCATTTTTACATTAGTGTAGTGTCA 57.384 30.769 0.00 0.00 41.56 3.58
118 119 8.936864 AGAGCATTTTTACATTAGTGTAGTGTC 58.063 33.333 0.00 0.41 41.56 3.67
119 120 8.848474 AGAGCATTTTTACATTAGTGTAGTGT 57.152 30.769 0.00 0.00 41.56 3.55
120 121 9.546909 CAAGAGCATTTTTACATTAGTGTAGTG 57.453 33.333 0.00 0.00 41.56 2.74
121 122 9.284968 ACAAGAGCATTTTTACATTAGTGTAGT 57.715 29.630 0.00 0.00 41.56 2.73
130 131 9.420118 TCCCATAATACAAGAGCATTTTTACAT 57.580 29.630 0.00 0.00 0.00 2.29
131 132 8.815565 TCCCATAATACAAGAGCATTTTTACA 57.184 30.769 0.00 0.00 0.00 2.41
132 133 9.683069 CATCCCATAATACAAGAGCATTTTTAC 57.317 33.333 0.00 0.00 0.00 2.01
133 134 8.859090 CCATCCCATAATACAAGAGCATTTTTA 58.141 33.333 0.00 0.00 0.00 1.52
134 135 7.564660 TCCATCCCATAATACAAGAGCATTTTT 59.435 33.333 0.00 0.00 0.00 1.94
135 136 7.068702 TCCATCCCATAATACAAGAGCATTTT 58.931 34.615 0.00 0.00 0.00 1.82
136 137 6.613699 TCCATCCCATAATACAAGAGCATTT 58.386 36.000 0.00 0.00 0.00 2.32
137 138 6.204852 TCCATCCCATAATACAAGAGCATT 57.795 37.500 0.00 0.00 0.00 3.56
138 139 5.280882 CCTCCATCCCATAATACAAGAGCAT 60.281 44.000 0.00 0.00 0.00 3.79
139 140 4.042062 CCTCCATCCCATAATACAAGAGCA 59.958 45.833 0.00 0.00 0.00 4.26
140 141 4.566488 CCCTCCATCCCATAATACAAGAGC 60.566 50.000 0.00 0.00 0.00 4.09
141 142 4.846367 TCCCTCCATCCCATAATACAAGAG 59.154 45.833 0.00 0.00 0.00 2.85
142 143 4.838403 TCCCTCCATCCCATAATACAAGA 58.162 43.478 0.00 0.00 0.00 3.02
143 144 4.599241 ACTCCCTCCATCCCATAATACAAG 59.401 45.833 0.00 0.00 0.00 3.16
144 145 4.577096 ACTCCCTCCATCCCATAATACAA 58.423 43.478 0.00 0.00 0.00 2.41
145 146 4.228237 ACTCCCTCCATCCCATAATACA 57.772 45.455 0.00 0.00 0.00 2.29
146 147 6.893020 AATACTCCCTCCATCCCATAATAC 57.107 41.667 0.00 0.00 0.00 1.89
147 148 7.905144 AAAATACTCCCTCCATCCCATAATA 57.095 36.000 0.00 0.00 0.00 0.98
148 149 6.803587 AAAATACTCCCTCCATCCCATAAT 57.196 37.500 0.00 0.00 0.00 1.28
149 150 7.297108 ACATAAAATACTCCCTCCATCCCATAA 59.703 37.037 0.00 0.00 0.00 1.90
150 151 6.797540 ACATAAAATACTCCCTCCATCCCATA 59.202 38.462 0.00 0.00 0.00 2.74
151 152 5.616986 ACATAAAATACTCCCTCCATCCCAT 59.383 40.000 0.00 0.00 0.00 4.00
152 153 4.981647 ACATAAAATACTCCCTCCATCCCA 59.018 41.667 0.00 0.00 0.00 4.37
153 154 5.515008 GGACATAAAATACTCCCTCCATCCC 60.515 48.000 0.00 0.00 0.00 3.85
154 155 5.310857 AGGACATAAAATACTCCCTCCATCC 59.689 44.000 0.00 0.00 0.00 3.51
155 156 6.043243 TGAGGACATAAAATACTCCCTCCATC 59.957 42.308 0.00 0.00 38.27 3.51
156 157 5.911178 TGAGGACATAAAATACTCCCTCCAT 59.089 40.000 0.00 0.00 38.27 3.41
157 158 5.285401 TGAGGACATAAAATACTCCCTCCA 58.715 41.667 0.00 0.00 38.27 3.86
158 159 5.888982 TGAGGACATAAAATACTCCCTCC 57.111 43.478 0.00 0.00 38.27 4.30
159 160 9.442047 CATATTGAGGACATAAAATACTCCCTC 57.558 37.037 0.00 0.00 39.20 4.30
160 161 7.885399 GCATATTGAGGACATAAAATACTCCCT 59.115 37.037 0.00 0.00 0.00 4.20
161 162 7.885399 AGCATATTGAGGACATAAAATACTCCC 59.115 37.037 0.00 0.00 0.00 4.30
162 163 8.854614 AGCATATTGAGGACATAAAATACTCC 57.145 34.615 0.00 0.00 0.00 3.85
186 187 6.801377 GCCCAAAAAGAAAGACAAACAAAAAG 59.199 34.615 0.00 0.00 0.00 2.27
212 214 8.821894 GTCATAAGAGTCAAATAGAACATGACC 58.178 37.037 0.00 0.00 43.46 4.02
277 283 9.716507 CGTCTATTATTTTGACCATTAAGTTGG 57.283 33.333 0.00 0.00 42.82 3.77
299 306 3.367087 CCGTGATAGGAAAGTCAACGTCT 60.367 47.826 0.00 0.00 0.00 4.18
301 308 2.929592 GCCGTGATAGGAAAGTCAACGT 60.930 50.000 0.00 0.00 0.00 3.99
302 309 1.659098 GCCGTGATAGGAAAGTCAACG 59.341 52.381 0.00 0.00 0.00 4.10
315 322 4.415150 CACCAGGGCTGCCGTGAT 62.415 66.667 35.58 22.12 41.36 3.06
321 328 4.828296 CCCATCCACCAGGGCTGC 62.828 72.222 0.00 0.00 38.44 5.25
334 341 1.932156 TTATGACAAGCGGGGCCCAT 61.932 55.000 26.86 7.56 0.00 4.00
354 361 3.188460 TGCTTTAGAGGATTTGAACACGC 59.812 43.478 0.00 0.00 0.00 5.34
361 368 9.390795 CGATTGATAATTGCTTTAGAGGATTTG 57.609 33.333 0.00 0.00 0.00 2.32
379 386 9.168451 TGCCAAAACTATAGAAAACGATTGATA 57.832 29.630 6.78 0.00 0.00 2.15
447 458 4.271533 TCGTCGCATTGAACTACAACTTTT 59.728 37.500 0.00 0.00 41.52 2.27
462 473 0.108804 AATTGAGGTCGTCGTCGCAT 60.109 50.000 0.00 0.00 36.96 4.73
465 476 2.117137 CCATAATTGAGGTCGTCGTCG 58.883 52.381 0.00 0.00 38.55 5.12
503 514 4.504097 GCAACTTTTCAAGTCGAGCATTTT 59.496 37.500 0.00 0.00 41.91 1.82
508 519 2.755836 TGCAACTTTTCAAGTCGAGC 57.244 45.000 0.00 0.00 41.91 5.03
515 526 3.925913 GTGCTTCACTTGCAACTTTTCAA 59.074 39.130 0.00 0.00 42.41 2.69
524 535 0.181114 ACCTGAGTGCTTCACTTGCA 59.819 50.000 0.66 0.00 45.44 4.08
532 543 2.551071 GGTGCTTCTTACCTGAGTGCTT 60.551 50.000 0.00 0.00 35.30 3.91
548 559 0.178932 TGGACCTACTGACTGGTGCT 60.179 55.000 5.37 0.00 43.68 4.40
549 560 0.905357 ATGGACCTACTGACTGGTGC 59.095 55.000 0.00 0.00 43.61 5.01
550 561 3.244561 ACAAATGGACCTACTGACTGGTG 60.245 47.826 0.00 0.00 36.59 4.17
564 1224 3.624707 GCTACCCTCCAATGACAAATGGA 60.625 47.826 11.61 11.61 43.32 3.41
568 1228 1.626321 TCGCTACCCTCCAATGACAAA 59.374 47.619 0.00 0.00 0.00 2.83
576 1236 3.035363 TGAATTATGTCGCTACCCTCCA 58.965 45.455 0.00 0.00 0.00 3.86
598 1258 2.421073 CGTTCCTCACCTATCACGTACA 59.579 50.000 0.00 0.00 0.00 2.90
606 1269 2.091775 AGGAGTAGCGTTCCTCACCTAT 60.092 50.000 1.42 0.00 41.18 2.57
654 1330 2.494870 GGCAAAAGACTCAATGCAGGAT 59.505 45.455 0.00 0.00 40.51 3.24
655 1331 1.888512 GGCAAAAGACTCAATGCAGGA 59.111 47.619 0.00 0.00 40.51 3.86
657 1333 1.614903 TGGGCAAAAGACTCAATGCAG 59.385 47.619 0.00 0.00 40.51 4.41
658 1334 1.702182 TGGGCAAAAGACTCAATGCA 58.298 45.000 0.00 0.00 40.51 3.96
659 1335 3.323751 AATGGGCAAAAGACTCAATGC 57.676 42.857 0.00 0.00 38.06 3.56
660 1336 6.222389 TGTAAAATGGGCAAAAGACTCAATG 58.778 36.000 0.00 0.00 0.00 2.82
661 1337 6.418057 TGTAAAATGGGCAAAAGACTCAAT 57.582 33.333 0.00 0.00 0.00 2.57
662 1338 5.860941 TGTAAAATGGGCAAAAGACTCAA 57.139 34.783 0.00 0.00 0.00 3.02
663 1339 5.538053 TCATGTAAAATGGGCAAAAGACTCA 59.462 36.000 0.00 0.00 0.00 3.41
664 1340 6.024552 TCATGTAAAATGGGCAAAAGACTC 57.975 37.500 0.00 0.00 0.00 3.36
665 1341 5.047092 CCTCATGTAAAATGGGCAAAAGACT 60.047 40.000 0.00 0.00 0.00 3.24
666 1342 5.170748 CCTCATGTAAAATGGGCAAAAGAC 58.829 41.667 0.00 0.00 0.00 3.01
667 1343 4.837860 ACCTCATGTAAAATGGGCAAAAGA 59.162 37.500 0.00 0.00 0.00 2.52
668 1344 5.151297 ACCTCATGTAAAATGGGCAAAAG 57.849 39.130 0.00 0.00 0.00 2.27
669 1345 5.559148 AACCTCATGTAAAATGGGCAAAA 57.441 34.783 0.00 0.00 0.00 2.44
670 1346 5.070981 TCAAACCTCATGTAAAATGGGCAAA 59.929 36.000 0.00 0.00 0.00 3.68
671 1347 4.590647 TCAAACCTCATGTAAAATGGGCAA 59.409 37.500 0.00 0.00 0.00 4.52
672 1348 4.155709 TCAAACCTCATGTAAAATGGGCA 58.844 39.130 0.00 0.00 0.00 5.36
673 1349 4.799564 TCAAACCTCATGTAAAATGGGC 57.200 40.909 0.00 0.00 0.00 5.36
674 1350 6.528537 TCATCAAACCTCATGTAAAATGGG 57.471 37.500 0.00 0.00 0.00 4.00
675 1351 8.875803 CAAATCATCAAACCTCATGTAAAATGG 58.124 33.333 0.00 0.00 0.00 3.16
676 1352 8.385111 GCAAATCATCAAACCTCATGTAAAATG 58.615 33.333 0.00 0.00 0.00 2.32
677 1353 8.316214 AGCAAATCATCAAACCTCATGTAAAAT 58.684 29.630 0.00 0.00 0.00 1.82
678 1354 7.669427 AGCAAATCATCAAACCTCATGTAAAA 58.331 30.769 0.00 0.00 0.00 1.52
679 1355 7.039853 TGAGCAAATCATCAAACCTCATGTAAA 60.040 33.333 0.00 0.00 31.12 2.01
680 1356 6.433716 TGAGCAAATCATCAAACCTCATGTAA 59.566 34.615 0.00 0.00 31.12 2.41
681 1357 5.945191 TGAGCAAATCATCAAACCTCATGTA 59.055 36.000 0.00 0.00 31.12 2.29
682 1358 4.768448 TGAGCAAATCATCAAACCTCATGT 59.232 37.500 0.00 0.00 31.12 3.21
683 1359 5.319140 TGAGCAAATCATCAAACCTCATG 57.681 39.130 0.00 0.00 31.12 3.07
684 1360 5.988310 TTGAGCAAATCATCAAACCTCAT 57.012 34.783 0.00 0.00 37.89 2.90
685 1361 5.988310 ATTGAGCAAATCATCAAACCTCA 57.012 34.783 0.00 0.00 38.80 3.86
686 1362 8.814235 CAATAATTGAGCAAATCATCAAACCTC 58.186 33.333 0.00 0.00 38.80 3.85
687 1363 8.316214 ACAATAATTGAGCAAATCATCAAACCT 58.684 29.630 0.00 0.00 38.80 3.50
688 1364 8.483307 ACAATAATTGAGCAAATCATCAAACC 57.517 30.769 0.00 0.00 38.80 3.27
689 1365 9.362539 AGACAATAATTGAGCAAATCATCAAAC 57.637 29.630 0.00 0.00 38.80 2.93
690 1366 9.577110 GAGACAATAATTGAGCAAATCATCAAA 57.423 29.630 0.00 0.00 38.80 2.69
691 1367 8.741841 TGAGACAATAATTGAGCAAATCATCAA 58.258 29.630 0.00 0.00 37.89 2.57
692 1368 8.283699 TGAGACAATAATTGAGCAAATCATCA 57.716 30.769 0.00 0.00 37.89 3.07
693 1369 9.745880 ATTGAGACAATAATTGAGCAAATCATC 57.254 29.630 0.00 0.00 37.89 2.92
694 1370 9.529325 CATTGAGACAATAATTGAGCAAATCAT 57.471 29.630 0.00 0.00 37.89 2.45
695 1371 7.977293 CCATTGAGACAATAATTGAGCAAATCA 59.023 33.333 0.00 0.00 35.62 2.57
696 1372 7.042925 GCCATTGAGACAATAATTGAGCAAATC 60.043 37.037 0.00 0.00 0.00 2.17
697 1373 6.759827 GCCATTGAGACAATAATTGAGCAAAT 59.240 34.615 0.00 0.00 0.00 2.32
698 1374 6.101332 GCCATTGAGACAATAATTGAGCAAA 58.899 36.000 0.00 0.00 0.00 3.68
699 1375 5.185442 TGCCATTGAGACAATAATTGAGCAA 59.815 36.000 0.00 0.00 0.00 3.91
700 1376 4.705991 TGCCATTGAGACAATAATTGAGCA 59.294 37.500 0.00 0.00 0.00 4.26
701 1377 5.252969 TGCCATTGAGACAATAATTGAGC 57.747 39.130 0.00 0.00 0.00 4.26
702 1378 6.750501 CACTTGCCATTGAGACAATAATTGAG 59.249 38.462 0.00 0.00 0.00 3.02
703 1379 6.350361 CCACTTGCCATTGAGACAATAATTGA 60.350 38.462 0.00 0.00 0.00 2.57
704 1380 5.808540 CCACTTGCCATTGAGACAATAATTG 59.191 40.000 0.00 0.00 0.00 2.32
705 1381 5.105228 CCCACTTGCCATTGAGACAATAATT 60.105 40.000 0.00 0.00 0.00 1.40
706 1382 4.403432 CCCACTTGCCATTGAGACAATAAT 59.597 41.667 0.00 0.00 0.00 1.28
707 1383 3.763360 CCCACTTGCCATTGAGACAATAA 59.237 43.478 0.00 0.00 0.00 1.40
708 1384 3.245229 ACCCACTTGCCATTGAGACAATA 60.245 43.478 0.00 0.00 0.00 1.90
709 1385 2.173519 CCCACTTGCCATTGAGACAAT 58.826 47.619 0.00 0.00 0.00 2.71
710 1386 1.133513 ACCCACTTGCCATTGAGACAA 60.134 47.619 0.00 0.00 0.00 3.18
711 1387 0.478072 ACCCACTTGCCATTGAGACA 59.522 50.000 0.00 0.00 0.00 3.41
712 1388 1.168714 GACCCACTTGCCATTGAGAC 58.831 55.000 0.00 0.00 0.00 3.36
713 1389 0.038166 GGACCCACTTGCCATTGAGA 59.962 55.000 0.00 0.00 0.00 3.27
714 1390 1.308069 CGGACCCACTTGCCATTGAG 61.308 60.000 0.00 0.00 0.00 3.02
715 1391 1.303236 CGGACCCACTTGCCATTGA 60.303 57.895 0.00 0.00 0.00 2.57
716 1392 2.342650 CCGGACCCACTTGCCATTG 61.343 63.158 0.00 0.00 0.00 2.82
717 1393 2.035626 CCGGACCCACTTGCCATT 59.964 61.111 0.00 0.00 0.00 3.16
718 1394 4.740822 GCCGGACCCACTTGCCAT 62.741 66.667 5.05 0.00 0.00 4.40
722 1398 2.971598 ATGGAGCCGGACCCACTTG 61.972 63.158 16.15 0.00 34.92 3.16
723 1399 2.610859 ATGGAGCCGGACCCACTT 60.611 61.111 16.15 0.70 34.92 3.16
724 1400 3.402681 CATGGAGCCGGACCCACT 61.403 66.667 16.15 0.00 34.92 4.00
735 1411 4.559063 CCCTCCTGCCGCATGGAG 62.559 72.222 22.39 22.39 46.91 3.86
737 1413 4.559063 CTCCCTCCTGCCGCATGG 62.559 72.222 0.00 0.00 38.77 3.66
738 1414 4.559063 CCTCCCTCCTGCCGCATG 62.559 72.222 0.00 0.00 0.00 4.06
742 1418 2.843912 AATTTGCCTCCCTCCTGCCG 62.844 60.000 0.00 0.00 0.00 5.69
743 1419 0.258774 TAATTTGCCTCCCTCCTGCC 59.741 55.000 0.00 0.00 0.00 4.85
744 1420 2.371658 ATAATTTGCCTCCCTCCTGC 57.628 50.000 0.00 0.00 0.00 4.85
745 1421 6.983906 ATTTAATAATTTGCCTCCCTCCTG 57.016 37.500 0.00 0.00 0.00 3.86
746 1422 8.057246 TCTATTTAATAATTTGCCTCCCTCCT 57.943 34.615 0.00 0.00 0.00 3.69
747 1423 8.164070 TCTCTATTTAATAATTTGCCTCCCTCC 58.836 37.037 0.00 0.00 0.00 4.30
748 1424 9.574516 TTCTCTATTTAATAATTTGCCTCCCTC 57.425 33.333 0.00 0.00 0.00 4.30
749 1425 9.579932 CTTCTCTATTTAATAATTTGCCTCCCT 57.420 33.333 0.00 0.00 0.00 4.20
750 1426 9.355916 ACTTCTCTATTTAATAATTTGCCTCCC 57.644 33.333 0.00 0.00 0.00 4.30
762 1438 9.515226 TTGCCACACTTTACTTCTCTATTTAAT 57.485 29.630 0.00 0.00 0.00 1.40
763 1439 8.911918 TTGCCACACTTTACTTCTCTATTTAA 57.088 30.769 0.00 0.00 0.00 1.52
764 1440 8.911918 TTTGCCACACTTTACTTCTCTATTTA 57.088 30.769 0.00 0.00 0.00 1.40
765 1441 7.817418 TTTGCCACACTTTACTTCTCTATTT 57.183 32.000 0.00 0.00 0.00 1.40
766 1442 7.719633 TCTTTTGCCACACTTTACTTCTCTATT 59.280 33.333 0.00 0.00 0.00 1.73
767 1443 7.224297 TCTTTTGCCACACTTTACTTCTCTAT 58.776 34.615 0.00 0.00 0.00 1.98
768 1444 6.588204 TCTTTTGCCACACTTTACTTCTCTA 58.412 36.000 0.00 0.00 0.00 2.43
769 1445 5.437060 TCTTTTGCCACACTTTACTTCTCT 58.563 37.500 0.00 0.00 0.00 3.10
770 1446 5.751243 TCTTTTGCCACACTTTACTTCTC 57.249 39.130 0.00 0.00 0.00 2.87
771 1447 6.321181 TGAATCTTTTGCCACACTTTACTTCT 59.679 34.615 0.00 0.00 0.00 2.85
772 1448 6.503524 TGAATCTTTTGCCACACTTTACTTC 58.496 36.000 0.00 0.00 0.00 3.01
773 1449 6.463995 TGAATCTTTTGCCACACTTTACTT 57.536 33.333 0.00 0.00 0.00 2.24
774 1450 6.463995 TTGAATCTTTTGCCACACTTTACT 57.536 33.333 0.00 0.00 0.00 2.24
775 1451 7.713764 AATTGAATCTTTTGCCACACTTTAC 57.286 32.000 0.00 0.00 0.00 2.01
776 1452 8.203485 AGAAATTGAATCTTTTGCCACACTTTA 58.797 29.630 0.00 0.00 0.00 1.85
777 1453 7.011669 CAGAAATTGAATCTTTTGCCACACTTT 59.988 33.333 0.00 0.00 0.00 2.66
778 1454 6.480981 CAGAAATTGAATCTTTTGCCACACTT 59.519 34.615 0.00 0.00 0.00 3.16
779 1455 5.987347 CAGAAATTGAATCTTTTGCCACACT 59.013 36.000 0.00 0.00 0.00 3.55
780 1456 5.178067 CCAGAAATTGAATCTTTTGCCACAC 59.822 40.000 0.00 0.00 0.00 3.82
781 1457 5.299148 CCAGAAATTGAATCTTTTGCCACA 58.701 37.500 0.00 0.00 0.00 4.17
782 1458 4.152938 GCCAGAAATTGAATCTTTTGCCAC 59.847 41.667 0.00 0.00 0.00 5.01
783 1459 4.317488 GCCAGAAATTGAATCTTTTGCCA 58.683 39.130 0.00 0.00 0.00 4.92
784 1460 3.686241 GGCCAGAAATTGAATCTTTTGCC 59.314 43.478 0.00 0.00 0.00 4.52
785 1461 3.368843 CGGCCAGAAATTGAATCTTTTGC 59.631 43.478 2.24 0.00 0.00 3.68
786 1462 3.928375 CCGGCCAGAAATTGAATCTTTTG 59.072 43.478 2.24 0.00 0.00 2.44
787 1463 3.578282 ACCGGCCAGAAATTGAATCTTTT 59.422 39.130 0.00 0.00 0.00 2.27
788 1464 3.165071 ACCGGCCAGAAATTGAATCTTT 58.835 40.909 0.00 0.00 0.00 2.52
789 1465 2.755103 GACCGGCCAGAAATTGAATCTT 59.245 45.455 0.00 0.00 0.00 2.40
790 1466 2.290896 TGACCGGCCAGAAATTGAATCT 60.291 45.455 0.00 0.00 0.00 2.40
791 1467 2.091541 TGACCGGCCAGAAATTGAATC 58.908 47.619 0.00 0.00 0.00 2.52
792 1468 1.818674 GTGACCGGCCAGAAATTGAAT 59.181 47.619 0.00 0.00 0.00 2.57
793 1469 1.243902 GTGACCGGCCAGAAATTGAA 58.756 50.000 0.00 0.00 0.00 2.69
794 1470 0.608035 GGTGACCGGCCAGAAATTGA 60.608 55.000 0.00 0.00 0.00 2.57
795 1471 0.893270 TGGTGACCGGCCAGAAATTG 60.893 55.000 0.00 0.00 0.00 2.32
796 1472 1.458486 TGGTGACCGGCCAGAAATT 59.542 52.632 0.00 0.00 0.00 1.82
797 1473 3.166434 TGGTGACCGGCCAGAAAT 58.834 55.556 0.00 0.00 0.00 2.17
807 1483 1.152756 AGTGGTTTGGCTGGTGACC 60.153 57.895 0.00 0.00 0.00 4.02
849 1525 1.093496 TGCGATTCGACGGCTCTCTA 61.093 55.000 10.88 0.00 0.00 2.43
857 1533 2.885644 CCCAGGTGCGATTCGACG 60.886 66.667 10.88 0.00 0.00 5.12
858 1534 3.195698 GCCCAGGTGCGATTCGAC 61.196 66.667 10.88 5.27 0.00 4.20
891 1573 3.396260 AAACGGAAGGATGTTCTTCGA 57.604 42.857 0.00 0.00 42.88 3.71
902 1584 0.934436 CACGCTTGCAAAACGGAAGG 60.934 55.000 21.37 7.92 42.99 3.46
936 1618 1.203313 GCAACGAACGAAGGAACGG 59.797 57.895 0.14 0.00 37.61 4.44
974 1660 2.840640 TAGAGAATCGGACAAGGGGA 57.159 50.000 0.00 0.00 42.67 4.81
979 1665 1.340248 GGCGGATAGAGAATCGGACAA 59.660 52.381 0.00 0.00 41.50 3.18
981 1667 0.959553 TGGCGGATAGAGAATCGGAC 59.040 55.000 0.00 0.00 42.07 4.79
1009 1695 1.802337 TTCGCGTGCCACTCACTAGT 61.802 55.000 5.77 0.00 43.46 2.57
1027 1714 3.322466 CTGCTCGGAGGGTGGGTT 61.322 66.667 7.20 0.00 0.00 4.11
1065 1752 1.377333 GCAGAGCAGGGTTACCACC 60.377 63.158 2.98 0.00 43.37 4.61
1091 1784 1.141881 ATCACATCAGACGGCGACC 59.858 57.895 16.62 4.70 0.00 4.79
1101 1794 2.190313 GCGGGGAGCATCACATCA 59.810 61.111 0.00 0.00 43.69 3.07
1166 1871 4.849329 CGTCCTCTACCGTGCGCC 62.849 72.222 4.18 0.00 0.00 6.53
1212 1917 5.734720 ACAACATCTTCACCGATAACAGAT 58.265 37.500 0.00 0.00 0.00 2.90
1224 1931 2.736721 GTTGAGCGCTACAACATCTTCA 59.263 45.455 30.57 13.91 44.49 3.02
1231 1938 1.201965 GCATGAGTTGAGCGCTACAAC 60.202 52.381 29.42 29.42 45.15 3.32
1233 1940 0.247460 AGCATGAGTTGAGCGCTACA 59.753 50.000 11.50 7.79 0.00 2.74
1247 1954 0.038892 GGACAACAGGCAACAGCATG 60.039 55.000 0.16 0.16 44.94 4.06
1271 1978 3.814945 CAAGTGGAGCACGAAGAAATTC 58.185 45.455 0.00 0.00 39.64 2.17
1290 1997 7.213678 CAGGACTAAAATTAAACTTTGGGCAA 58.786 34.615 5.38 0.00 0.00 4.52
1291 1998 6.740122 GCAGGACTAAAATTAAACTTTGGGCA 60.740 38.462 5.38 0.00 0.00 5.36
1300 2007 5.310451 ACAGGACGCAGGACTAAAATTAAA 58.690 37.500 0.00 0.00 0.00 1.52
1306 2013 2.489971 CAAACAGGACGCAGGACTAAA 58.510 47.619 0.00 0.00 0.00 1.85
1320 2027 1.406539 AGTGCAAAGAGTGGCAAACAG 59.593 47.619 0.00 0.00 42.45 3.16
1348 2059 3.609853 GTCAAACACTCTATGGGCATGA 58.390 45.455 0.00 0.00 0.00 3.07
1382 2093 3.767806 CAGGCCTGCTCGAGCTCA 61.768 66.667 35.27 17.61 42.66 4.26
1415 2126 2.212900 GACCGGCAAAAGGACATGGC 62.213 60.000 0.00 0.00 38.62 4.40
1446 2159 1.069636 GCAACTCAAGAGAAGGCAACG 60.070 52.381 3.73 0.00 46.39 4.10
1484 2197 5.355350 AGAACCCGATCATCAAGAATTCAAC 59.645 40.000 8.44 0.00 0.00 3.18
1500 2213 3.581332 ACACCAAATTAGAGAGAACCCGA 59.419 43.478 0.00 0.00 0.00 5.14
1507 2220 7.231519 AGGAAAAGGAAACACCAAATTAGAGAG 59.768 37.037 0.00 0.00 42.04 3.20
1532 2245 4.904466 GCATGCCTGCCTGAAAAG 57.096 55.556 6.36 0.00 42.88 2.27
1552 2265 1.043816 CTGATCGGACTGGCCATACT 58.956 55.000 5.51 0.00 35.94 2.12
1610 2323 2.735762 GCGGCTCGAACTAAAGATGACT 60.736 50.000 0.00 0.00 0.00 3.41
1635 2348 5.419542 ACTCTTATCGCTAAATGTGAAGCA 58.580 37.500 0.00 0.00 38.70 3.91
1649 2362 7.148507 GGAATAATGGATCTGCAACTCTTATCG 60.149 40.741 0.00 0.00 0.00 2.92
1707 2420 1.677966 CTCCAATGCTGCTGCCACT 60.678 57.895 13.47 0.00 38.71 4.00
1728 2441 1.286257 GAAGAAGAAGGGGCCTTGGAT 59.714 52.381 0.84 0.00 36.26 3.41
1773 2486 5.591877 TCTCGGTGATTAGTACTAACCCTTC 59.408 44.000 17.45 11.47 0.00 3.46
1776 2489 5.841957 TTCTCGGTGATTAGTACTAACCC 57.158 43.478 17.45 15.33 0.00 4.11
1808 2524 2.535984 GAGACGCACATCGATTAACCAG 59.464 50.000 0.00 0.00 41.67 4.00
2085 2802 1.071542 TGTCATCGCCCTGAGAACAAA 59.928 47.619 0.00 0.00 0.00 2.83
2134 2851 4.785301 CTTGATTAAAGAGATCCAGGCCA 58.215 43.478 5.01 0.00 38.24 5.36
2135 2852 3.567585 GCTTGATTAAAGAGATCCAGGCC 59.432 47.826 0.00 0.00 38.24 5.19
2165 2882 3.490348 CAAACAGTCCTCAACTTGGGAT 58.510 45.455 0.00 0.00 35.45 3.85
2319 3040 7.360113 TCAGTAGCACATATCTAACCATTCA 57.640 36.000 0.00 0.00 0.00 2.57
2347 3068 5.124645 AGCATTCCTAAGAGCATTCTTCTG 58.875 41.667 0.00 0.00 42.60 3.02
2475 3201 9.046296 CAAATGAACTTAGACTATATGGTGGTC 57.954 37.037 0.00 0.00 38.51 4.02
2573 3334 9.413734 GGTAAAGACTAAACTGGTATAGGTAGA 57.586 37.037 0.00 0.00 0.00 2.59
2576 3337 8.676397 AAGGTAAAGACTAAACTGGTATAGGT 57.324 34.615 0.00 0.00 0.00 3.08
2586 3347 7.698506 AATGGCCTAAAGGTAAAGACTAAAC 57.301 36.000 3.32 0.00 37.57 2.01
2596 3357 2.908916 GCACGTAATGGCCTAAAGGTA 58.091 47.619 3.32 0.00 37.57 3.08
2638 3399 4.024048 ACACACGAGGCAAATAAGTCAAAG 60.024 41.667 0.00 0.00 0.00 2.77
2715 3493 7.028962 TGTTGCAGTGCTGAATAAATGATTAC 58.971 34.615 17.60 0.00 0.00 1.89
2802 3593 6.011122 AGGAGAAATCCTGCAGATACAAAT 57.989 37.500 17.39 0.00 38.98 2.32
2938 3729 8.733092 TGATAATCCAGATTCCAGAAGTATCT 57.267 34.615 0.00 0.00 32.32 1.98
2946 3737 8.373981 ACTATGTTCTGATAATCCAGATTCCAG 58.626 37.037 12.74 12.74 42.18 3.86
2975 3766 6.178607 AGATTTTTCAAGGACAGGCAAATT 57.821 33.333 0.00 0.00 0.00 1.82
2976 3767 5.813513 AGATTTTTCAAGGACAGGCAAAT 57.186 34.783 0.00 0.00 0.00 2.32
2977 3768 5.128499 TGAAGATTTTTCAAGGACAGGCAAA 59.872 36.000 0.00 0.00 0.00 3.68
2978 3769 4.648762 TGAAGATTTTTCAAGGACAGGCAA 59.351 37.500 0.00 0.00 0.00 4.52
2979 3770 4.214310 TGAAGATTTTTCAAGGACAGGCA 58.786 39.130 0.00 0.00 0.00 4.75
2980 3771 4.853924 TGAAGATTTTTCAAGGACAGGC 57.146 40.909 0.00 0.00 0.00 4.85
2981 3772 8.667076 AAATTTGAAGATTTTTCAAGGACAGG 57.333 30.769 3.01 0.00 39.30 4.00
3010 3801 4.320608 TTCAAGGACAGGCAAATTTGAC 57.679 40.909 22.31 19.61 36.08 3.18
3011 3802 5.350504 TTTTCAAGGACAGGCAAATTTGA 57.649 34.783 22.31 0.00 0.00 2.69
3012 3803 6.484308 AGATTTTTCAAGGACAGGCAAATTTG 59.516 34.615 14.03 14.03 0.00 2.32
3013 3804 6.594744 AGATTTTTCAAGGACAGGCAAATTT 58.405 32.000 0.00 0.00 0.00 1.82
3149 3993 3.772025 AGATCGAGGGAAGAAACATGTCT 59.228 43.478 0.00 0.00 0.00 3.41
3152 3996 6.985188 TTTTAGATCGAGGGAAGAAACATG 57.015 37.500 0.00 0.00 0.00 3.21
3267 4113 6.279882 CACAGGCTGGAAACAAGAAAAATAA 58.720 36.000 20.34 0.00 42.06 1.40
3393 4239 0.676782 CTGCTTTACCCCCACTTCGG 60.677 60.000 0.00 0.00 0.00 4.30
3496 4342 2.738846 CTGAACACATGGAAGAAGGTCG 59.261 50.000 0.00 0.00 0.00 4.79
3582 4428 7.066163 CACTCTCCTGTTATTTATCATGCAACA 59.934 37.037 0.00 0.00 0.00 3.33
3628 4839 3.000724 CGCAGTTTGCACTTATAGCTCTC 59.999 47.826 0.00 0.00 45.36 3.20
3631 4842 1.398390 GCGCAGTTTGCACTTATAGCT 59.602 47.619 0.30 0.00 45.36 3.32
4064 5276 8.997323 GCATGATAAAGTACTAGATTGCTCATT 58.003 33.333 0.00 0.00 0.00 2.57
4065 5277 8.373981 AGCATGATAAAGTACTAGATTGCTCAT 58.626 33.333 0.00 0.00 31.54 2.90
4066 5278 7.654923 CAGCATGATAAAGTACTAGATTGCTCA 59.345 37.037 12.34 5.62 39.69 4.26
4067 5279 7.655328 ACAGCATGATAAAGTACTAGATTGCTC 59.345 37.037 12.34 1.31 39.69 4.26
4121 5338 4.747108 GTCCTCATGAAGTCCATACGATTG 59.253 45.833 0.00 0.00 33.31 2.67
4246 5476 7.816945 AAACTCCATCGCATTGAAAATTAAG 57.183 32.000 0.00 0.00 0.00 1.85
4299 5536 9.958285 CACATGTATATAAATTAAGCTACGCAG 57.042 33.333 0.00 0.00 0.00 5.18
4340 5578 0.764369 AGTCTGCTCCACCAGGTTGA 60.764 55.000 0.00 0.00 35.89 3.18
4379 5617 1.476085 ACTGCTTCTCTCATCTGGACG 59.524 52.381 0.00 0.00 0.00 4.79
4475 5713 4.318332 ACAGCGAAAGATTCAGAATCACA 58.682 39.130 22.70 0.00 40.42 3.58
4504 5742 9.048446 CATGAACACATACAATCATCTGTCATA 57.952 33.333 0.00 0.00 30.39 2.15
4525 5764 1.200716 GCAGCTAAGCACAAGCATGAA 59.799 47.619 0.00 0.00 45.49 2.57
4537 5776 1.000283 CGGAGGGAGTATGCAGCTAAG 60.000 57.143 0.00 0.00 0.00 2.18
4548 5787 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4549 5788 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4550 5789 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4551 5790 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4552 5791 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4553 5792 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4554 5793 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
4555 5794 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
4556 5795 2.537401 GAGGACAAGTATTTCCGGACG 58.463 52.381 1.83 0.00 36.95 4.79
4557 5796 2.165030 TCGAGGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 36.95 4.79
4558 5797 2.449464 TCGAGGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 36.95 5.14
4559 5798 2.953466 TCGAGGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 36.95 5.14
4560 5799 4.034048 CCATTTCGAGGACAAGTATTTCCG 59.966 45.833 0.00 0.00 36.95 4.30
4561 5800 5.183228 TCCATTTCGAGGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
4562 5801 6.927294 ATCCATTTCGAGGACAAGTATTTC 57.073 37.500 0.00 0.00 38.13 2.17
4563 5802 8.801882 TTTATCCATTTCGAGGACAAGTATTT 57.198 30.769 0.00 0.00 38.13 1.40
4564 5803 8.801882 TTTTATCCATTTCGAGGACAAGTATT 57.198 30.769 0.00 0.00 38.13 1.89
4565 5804 8.840321 CATTTTATCCATTTCGAGGACAAGTAT 58.160 33.333 0.00 0.00 38.13 2.12
4566 5805 7.282224 CCATTTTATCCATTTCGAGGACAAGTA 59.718 37.037 0.00 0.00 38.13 2.24
4567 5806 6.095440 CCATTTTATCCATTTCGAGGACAAGT 59.905 38.462 0.00 0.00 38.13 3.16
4568 5807 6.318648 TCCATTTTATCCATTTCGAGGACAAG 59.681 38.462 0.00 0.00 38.13 3.16
4569 5808 6.184068 TCCATTTTATCCATTTCGAGGACAA 58.816 36.000 0.00 0.00 38.13 3.18
4570 5809 5.750524 TCCATTTTATCCATTTCGAGGACA 58.249 37.500 0.00 0.00 38.13 4.02
4571 5810 6.263168 ACATCCATTTTATCCATTTCGAGGAC 59.737 38.462 0.00 0.00 38.13 3.85
4572 5811 6.364701 ACATCCATTTTATCCATTTCGAGGA 58.635 36.000 0.00 0.00 39.97 3.71
4573 5812 6.639632 ACATCCATTTTATCCATTTCGAGG 57.360 37.500 0.00 0.00 0.00 4.63
4574 5813 9.224267 AGATACATCCATTTTATCCATTTCGAG 57.776 33.333 0.00 0.00 0.00 4.04
4610 5849 9.838339 CCTCAAAATGGTTGTATCTAGACTTAT 57.162 33.333 0.00 0.00 0.00 1.73
4611 5850 9.042450 TCCTCAAAATGGTTGTATCTAGACTTA 57.958 33.333 0.00 0.00 0.00 2.24
4612 5851 7.824779 GTCCTCAAAATGGTTGTATCTAGACTT 59.175 37.037 0.00 0.00 0.00 3.01
4613 5852 7.038302 TGTCCTCAAAATGGTTGTATCTAGACT 60.038 37.037 0.00 0.00 0.00 3.24
4614 5853 7.103641 TGTCCTCAAAATGGTTGTATCTAGAC 58.896 38.462 0.00 0.00 0.00 2.59
4615 5854 7.252612 TGTCCTCAAAATGGTTGTATCTAGA 57.747 36.000 0.00 0.00 0.00 2.43
4616 5855 7.607991 ACTTGTCCTCAAAATGGTTGTATCTAG 59.392 37.037 0.00 0.00 32.87 2.43
4617 5856 7.458397 ACTTGTCCTCAAAATGGTTGTATCTA 58.542 34.615 0.00 0.00 32.87 1.98
4618 5857 6.306987 ACTTGTCCTCAAAATGGTTGTATCT 58.693 36.000 0.00 0.00 32.87 1.98
4619 5858 6.575162 ACTTGTCCTCAAAATGGTTGTATC 57.425 37.500 0.00 0.00 32.87 2.24
4620 5859 8.650143 AATACTTGTCCTCAAAATGGTTGTAT 57.350 30.769 0.00 0.00 32.87 2.29
4621 5860 8.472007 AAATACTTGTCCTCAAAATGGTTGTA 57.528 30.769 0.00 0.00 32.87 2.41
4622 5861 6.976934 AATACTTGTCCTCAAAATGGTTGT 57.023 33.333 0.00 0.00 32.87 3.32
4623 5862 6.868339 GGAAATACTTGTCCTCAAAATGGTTG 59.132 38.462 0.00 0.00 32.87 3.77
4624 5863 6.294508 CGGAAATACTTGTCCTCAAAATGGTT 60.295 38.462 0.00 0.00 32.87 3.67
4625 5864 5.183140 CGGAAATACTTGTCCTCAAAATGGT 59.817 40.000 0.00 0.00 32.87 3.55
4626 5865 5.393027 CCGGAAATACTTGTCCTCAAAATGG 60.393 44.000 0.00 0.00 32.87 3.16
4627 5866 5.414454 TCCGGAAATACTTGTCCTCAAAATG 59.586 40.000 0.00 0.00 32.87 2.32
4628 5867 5.414765 GTCCGGAAATACTTGTCCTCAAAAT 59.585 40.000 5.23 0.00 32.87 1.82
4629 5868 4.758165 GTCCGGAAATACTTGTCCTCAAAA 59.242 41.667 5.23 0.00 32.87 2.44
4630 5869 4.320870 GTCCGGAAATACTTGTCCTCAAA 58.679 43.478 5.23 0.00 32.87 2.69
4631 5870 3.615592 CGTCCGGAAATACTTGTCCTCAA 60.616 47.826 5.23 0.00 0.00 3.02
4632 5871 2.094390 CGTCCGGAAATACTTGTCCTCA 60.094 50.000 5.23 0.00 0.00 3.86
4633 5872 2.537401 CGTCCGGAAATACTTGTCCTC 58.463 52.381 5.23 0.00 0.00 3.71
4634 5873 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
4635 5874 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
4636 5875 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4637 5876 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4638 5877 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4639 5878 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4640 5879 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4641 5880 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4642 5881 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4643 5882 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4644 5883 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
4645 5884 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
4646 5885 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
4647 5886 0.107017 TAAGTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
4648 5887 1.755179 TTAAGTACTCCCTCCGTCCG 58.245 55.000 0.00 0.00 0.00 4.79
4649 5888 3.450096 ACAATTAAGTACTCCCTCCGTCC 59.550 47.826 0.00 0.00 0.00 4.79
4650 5889 4.732672 ACAATTAAGTACTCCCTCCGTC 57.267 45.455 0.00 0.00 0.00 4.79
4651 5890 4.648307 CCTACAATTAAGTACTCCCTCCGT 59.352 45.833 0.00 0.00 0.00 4.69
4652 5891 4.648307 ACCTACAATTAAGTACTCCCTCCG 59.352 45.833 0.00 0.00 0.00 4.63
4653 5892 7.852550 ATACCTACAATTAAGTACTCCCTCC 57.147 40.000 0.00 0.00 0.00 4.30
4654 5893 9.761504 GAAATACCTACAATTAAGTACTCCCTC 57.238 37.037 0.00 0.00 0.00 4.30
4655 5894 9.275572 TGAAATACCTACAATTAAGTACTCCCT 57.724 33.333 0.00 0.00 0.00 4.20
4682 5921 6.884295 ACCTCACGAAAGGAATGATTGAAATA 59.116 34.615 13.56 0.00 38.87 1.40
4688 5927 3.244911 ACCACCTCACGAAAGGAATGATT 60.245 43.478 13.56 0.00 38.87 2.57
4701 5940 2.359230 GCTCCAGCACCACCTCAC 60.359 66.667 0.00 0.00 41.59 3.51
4753 5992 7.118496 TGAAAACAGAAAACATAACCACCAT 57.882 32.000 0.00 0.00 0.00 3.55
4769 6008 3.306225 CCACCAACCCATGATGAAAACAG 60.306 47.826 0.00 0.00 0.00 3.16
4777 6016 3.756082 ACATAACCACCAACCCATGAT 57.244 42.857 0.00 0.00 0.00 2.45
5196 8221 0.976641 TTGGAGATGTTCTCGCAGGT 59.023 50.000 0.00 0.00 44.28 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.