Multiple sequence alignment - TraesCS2B01G173400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G173400 chr2B 100.000 3348 0 0 1 3348 147287249 147283902 0.000000e+00 6183.0
1 TraesCS2B01G173400 chr2B 87.160 1215 73 40 686 1875 147409077 147407921 0.000000e+00 1303.0
2 TraesCS2B01G173400 chr2B 82.018 773 131 7 1407 2175 146996625 146995857 0.000000e+00 651.0
3 TraesCS2B01G173400 chr2B 93.538 325 21 0 1868 2192 147405301 147404977 5.020000e-133 484.0
4 TraesCS2B01G173400 chr2B 95.425 153 5 2 348 498 507928950 507928798 3.340000e-60 243.0
5 TraesCS2B01G173400 chr2D 90.000 2050 105 41 494 2499 95655804 95653811 0.000000e+00 2558.0
6 TraesCS2B01G173400 chr2D 87.364 1749 119 47 686 2394 95666914 95668600 0.000000e+00 1912.0
7 TraesCS2B01G173400 chr2D 88.562 1224 75 38 644 1820 95683611 95684816 0.000000e+00 1424.0
8 TraesCS2B01G173400 chr2D 91.568 593 29 13 1810 2388 95685838 95686423 0.000000e+00 798.0
9 TraesCS2B01G173400 chr2D 82.620 771 130 4 1407 2175 95649043 95648275 0.000000e+00 678.0
10 TraesCS2B01G173400 chr2D 92.068 353 18 5 9 351 95656132 95655780 3.880000e-134 488.0
11 TraesCS2B01G173400 chr2D 81.992 261 16 11 2491 2739 95653659 95653418 3.410000e-45 193.0
12 TraesCS2B01G173400 chr2D 93.548 93 4 2 227 319 95683378 95683468 1.620000e-28 137.0
13 TraesCS2B01G173400 chr2D 96.296 54 2 0 2749 2802 534926716 534926663 4.600000e-14 89.8
14 TraesCS2B01G173400 chr2D 97.143 35 1 0 2556 2590 2608232 2608198 3.610000e-05 60.2
15 TraesCS2B01G173400 chr2A 88.966 2021 132 46 494 2465 94205684 94203706 0.000000e+00 2412.0
16 TraesCS2B01G173400 chr2A 86.969 1343 90 44 693 2008 94275309 94276593 0.000000e+00 1432.0
17 TraesCS2B01G173400 chr2A 82.536 773 127 7 1407 2175 94162156 94161388 0.000000e+00 673.0
18 TraesCS2B01G173400 chr2A 93.333 345 21 2 9 351 94206004 94205660 2.980000e-140 508.0
19 TraesCS2B01G173400 chr2A 95.455 154 5 2 347 498 678376407 678376560 9.280000e-61 244.0
20 TraesCS2B01G173400 chr6B 95.841 529 20 2 2821 3348 657761171 657760644 0.000000e+00 854.0
21 TraesCS2B01G173400 chr6B 95.636 527 21 2 2823 3347 576955764 576955238 0.000000e+00 845.0
22 TraesCS2B01G173400 chr6B 95.057 526 25 1 2823 3347 657747589 657747064 0.000000e+00 826.0
23 TraesCS2B01G173400 chr6B 94.697 528 26 2 2823 3348 576968156 576967629 0.000000e+00 819.0
24 TraesCS2B01G173400 chr6B 93.750 160 8 2 347 504 85724141 85723982 4.320000e-59 239.0
25 TraesCS2B01G173400 chr3B 95.066 527 25 1 2823 3348 777251901 777252427 0.000000e+00 828.0
26 TraesCS2B01G173400 chr3B 94.508 528 27 2 2823 3348 631846591 631847118 0.000000e+00 813.0
27 TraesCS2B01G173400 chr3B 93.974 531 25 4 2823 3348 800914838 800915366 0.000000e+00 797.0
28 TraesCS2B01G173400 chr7B 94.151 530 26 5 2823 3348 400234371 400234899 0.000000e+00 802.0
29 TraesCS2B01G173400 chr7B 75.990 783 162 19 1399 2168 535614580 535615349 6.780000e-102 381.0
30 TraesCS2B01G173400 chr7B 75.831 782 165 18 1399 2168 535506321 535507090 3.150000e-100 375.0
31 TraesCS2B01G173400 chr7B 75.734 783 164 20 1399 2168 535518363 535519132 1.470000e-98 370.0
32 TraesCS2B01G173400 chr4B 93.785 531 28 5 2819 3347 373172573 373173100 0.000000e+00 793.0
33 TraesCS2B01G173400 chr4B 91.803 183 9 6 331 510 316805778 316805599 1.990000e-62 250.0
34 TraesCS2B01G173400 chr7D 76.982 782 156 19 1399 2168 506882887 506883656 3.090000e-115 425.0
35 TraesCS2B01G173400 chr7A 76.117 783 161 19 1399 2168 574754109 574754878 1.460000e-103 387.0
36 TraesCS2B01G173400 chr3A 94.904 157 6 2 347 501 225897018 225896862 9.280000e-61 244.0
37 TraesCS2B01G173400 chr5A 95.425 153 5 2 348 498 33872995 33873147 3.340000e-60 243.0
38 TraesCS2B01G173400 chr5A 93.750 160 8 2 341 498 437033859 437034018 4.320000e-59 239.0
39 TraesCS2B01G173400 chr5A 94.304 158 6 3 343 498 472588242 472588398 4.320000e-59 239.0
40 TraesCS2B01G173400 chr1B 95.395 152 5 2 349 498 600258947 600259098 1.200000e-59 241.0
41 TraesCS2B01G173400 chr1B 94.828 58 2 1 2749 2805 377924680 377924623 4.600000e-14 89.8
42 TraesCS2B01G173400 chr5B 96.364 55 2 0 2749 2803 543784467 543784413 1.280000e-14 91.6
43 TraesCS2B01G173400 chr1A 96.296 54 2 0 2749 2802 49302122 49302069 4.600000e-14 89.8
44 TraesCS2B01G173400 chr1A 96.296 54 2 0 2749 2802 556416511 556416458 4.600000e-14 89.8
45 TraesCS2B01G173400 chr1A 96.296 54 2 0 2749 2802 556419061 556419008 4.600000e-14 89.8
46 TraesCS2B01G173400 chr1A 96.296 54 2 0 2749 2802 556421338 556421285 4.600000e-14 89.8
47 TraesCS2B01G173400 chr1A 96.296 54 2 0 2749 2802 556422209 556422156 4.600000e-14 89.8
48 TraesCS2B01G173400 chr1A 96.296 54 2 0 2749 2802 556423079 556423026 4.600000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G173400 chr2B 147283902 147287249 3347 True 6183.000000 6183 100.0000 1 3348 1 chr2B.!!$R2 3347
1 TraesCS2B01G173400 chr2B 147404977 147409077 4100 True 893.500000 1303 90.3490 686 2192 2 chr2B.!!$R4 1506
2 TraesCS2B01G173400 chr2B 146995857 146996625 768 True 651.000000 651 82.0180 1407 2175 1 chr2B.!!$R1 768
3 TraesCS2B01G173400 chr2D 95666914 95668600 1686 False 1912.000000 1912 87.3640 686 2394 1 chr2D.!!$F1 1708
4 TraesCS2B01G173400 chr2D 95653418 95656132 2714 True 1079.666667 2558 88.0200 9 2739 3 chr2D.!!$R4 2730
5 TraesCS2B01G173400 chr2D 95683378 95686423 3045 False 786.333333 1424 91.2260 227 2388 3 chr2D.!!$F2 2161
6 TraesCS2B01G173400 chr2D 95648275 95649043 768 True 678.000000 678 82.6200 1407 2175 1 chr2D.!!$R2 768
7 TraesCS2B01G173400 chr2A 94203706 94206004 2298 True 1460.000000 2412 91.1495 9 2465 2 chr2A.!!$R2 2456
8 TraesCS2B01G173400 chr2A 94275309 94276593 1284 False 1432.000000 1432 86.9690 693 2008 1 chr2A.!!$F1 1315
9 TraesCS2B01G173400 chr2A 94161388 94162156 768 True 673.000000 673 82.5360 1407 2175 1 chr2A.!!$R1 768
10 TraesCS2B01G173400 chr6B 657760644 657761171 527 True 854.000000 854 95.8410 2821 3348 1 chr6B.!!$R5 527
11 TraesCS2B01G173400 chr6B 576955238 576955764 526 True 845.000000 845 95.6360 2823 3347 1 chr6B.!!$R2 524
12 TraesCS2B01G173400 chr6B 657747064 657747589 525 True 826.000000 826 95.0570 2823 3347 1 chr6B.!!$R4 524
13 TraesCS2B01G173400 chr6B 576967629 576968156 527 True 819.000000 819 94.6970 2823 3348 1 chr6B.!!$R3 525
14 TraesCS2B01G173400 chr3B 777251901 777252427 526 False 828.000000 828 95.0660 2823 3348 1 chr3B.!!$F2 525
15 TraesCS2B01G173400 chr3B 631846591 631847118 527 False 813.000000 813 94.5080 2823 3348 1 chr3B.!!$F1 525
16 TraesCS2B01G173400 chr3B 800914838 800915366 528 False 797.000000 797 93.9740 2823 3348 1 chr3B.!!$F3 525
17 TraesCS2B01G173400 chr7B 400234371 400234899 528 False 802.000000 802 94.1510 2823 3348 1 chr7B.!!$F1 525
18 TraesCS2B01G173400 chr7B 535614580 535615349 769 False 381.000000 381 75.9900 1399 2168 1 chr7B.!!$F4 769
19 TraesCS2B01G173400 chr7B 535506321 535507090 769 False 375.000000 375 75.8310 1399 2168 1 chr7B.!!$F2 769
20 TraesCS2B01G173400 chr7B 535518363 535519132 769 False 370.000000 370 75.7340 1399 2168 1 chr7B.!!$F3 769
21 TraesCS2B01G173400 chr4B 373172573 373173100 527 False 793.000000 793 93.7850 2819 3347 1 chr4B.!!$F1 528
22 TraesCS2B01G173400 chr7D 506882887 506883656 769 False 425.000000 425 76.9820 1399 2168 1 chr7D.!!$F1 769
23 TraesCS2B01G173400 chr7A 574754109 574754878 769 False 387.000000 387 76.1170 1399 2168 1 chr7A.!!$F1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
492 494 0.035056 GGGTGCTAGTGCCATGAGTT 60.035 55.0 0.0 0.0 38.71 3.01 F
1059 1120 0.037232 TCAACCACACGACACACACA 60.037 50.0 0.0 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 1819 1.210413 GAAGCTGTCGACGAGCTGA 59.790 57.895 30.08 6.99 46.32 4.26 R
2789 6760 0.106868 GGACCCATACCGAAAAGGGG 60.107 60.000 0.00 0.00 45.83 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.863049 CATGCTAAAAATCCATGTAAGTTCAAC 58.137 33.333 0.00 0.00 33.46 3.18
91 92 1.372997 CGACCGTGACTGGTGAAGG 60.373 63.158 3.96 0.00 44.01 3.46
173 174 7.475015 CCCATCGACAATTATAAGGCATTATG 58.525 38.462 13.68 1.04 33.58 1.90
224 225 4.082571 GCATAGATCACACTGGCTTTGTTT 60.083 41.667 0.00 0.00 0.00 2.83
317 319 2.627737 GCGCTCCCCGACGATCTAT 61.628 63.158 0.00 0.00 40.02 1.98
318 320 1.502640 CGCTCCCCGACGATCTATC 59.497 63.158 0.00 0.00 40.02 2.08
319 321 0.956410 CGCTCCCCGACGATCTATCT 60.956 60.000 0.00 0.00 40.02 1.98
320 322 1.675116 CGCTCCCCGACGATCTATCTA 60.675 57.143 0.00 0.00 40.02 1.98
321 323 2.011222 GCTCCCCGACGATCTATCTAG 58.989 57.143 0.00 0.00 0.00 2.43
325 327 4.767478 TCCCCGACGATCTATCTAGTATG 58.233 47.826 0.00 0.00 0.00 2.39
326 328 4.468868 TCCCCGACGATCTATCTAGTATGA 59.531 45.833 0.00 0.00 0.00 2.15
327 329 5.130643 TCCCCGACGATCTATCTAGTATGAT 59.869 44.000 0.00 0.00 0.00 2.45
328 330 5.467399 CCCCGACGATCTATCTAGTATGATC 59.533 48.000 0.00 9.75 33.88 2.92
335 337 9.337396 ACGATCTATCTAGTATGATCATCCTTC 57.663 37.037 12.53 0.00 36.16 3.46
348 350 3.743521 TCATCCTTCTGTGTGGACTTTG 58.256 45.455 0.00 0.00 34.90 2.77
349 351 3.390967 TCATCCTTCTGTGTGGACTTTGA 59.609 43.478 0.00 0.00 34.90 2.69
350 352 3.475566 TCCTTCTGTGTGGACTTTGAG 57.524 47.619 0.00 0.00 0.00 3.02
351 353 3.038280 TCCTTCTGTGTGGACTTTGAGA 58.962 45.455 0.00 0.00 0.00 3.27
352 354 3.454447 TCCTTCTGTGTGGACTTTGAGAA 59.546 43.478 0.00 0.00 0.00 2.87
353 355 3.561725 CCTTCTGTGTGGACTTTGAGAAC 59.438 47.826 0.00 0.00 0.00 3.01
354 356 4.446371 CTTCTGTGTGGACTTTGAGAACT 58.554 43.478 0.00 0.00 0.00 3.01
355 357 5.453339 CCTTCTGTGTGGACTTTGAGAACTA 60.453 44.000 0.00 0.00 0.00 2.24
356 358 5.201713 TCTGTGTGGACTTTGAGAACTAG 57.798 43.478 0.00 0.00 0.00 2.57
357 359 4.039245 TCTGTGTGGACTTTGAGAACTAGG 59.961 45.833 0.00 0.00 0.00 3.02
358 360 3.709653 TGTGTGGACTTTGAGAACTAGGT 59.290 43.478 0.00 0.00 0.00 3.08
359 361 4.163458 TGTGTGGACTTTGAGAACTAGGTT 59.837 41.667 0.00 0.00 0.00 3.50
360 362 4.511826 GTGTGGACTTTGAGAACTAGGTTG 59.488 45.833 0.00 0.00 0.00 3.77
361 363 4.163458 TGTGGACTTTGAGAACTAGGTTGT 59.837 41.667 0.00 0.00 0.00 3.32
362 364 5.364446 TGTGGACTTTGAGAACTAGGTTGTA 59.636 40.000 0.00 0.00 0.00 2.41
363 365 5.927115 GTGGACTTTGAGAACTAGGTTGTAG 59.073 44.000 0.00 0.00 0.00 2.74
364 366 4.930405 GGACTTTGAGAACTAGGTTGTAGC 59.070 45.833 0.00 0.00 0.00 3.58
365 367 4.895961 ACTTTGAGAACTAGGTTGTAGCC 58.104 43.478 0.00 0.00 0.00 3.93
366 368 4.593634 ACTTTGAGAACTAGGTTGTAGCCT 59.406 41.667 0.00 0.00 42.43 4.58
367 369 5.778750 ACTTTGAGAACTAGGTTGTAGCCTA 59.221 40.000 0.00 0.00 39.94 3.93
376 378 3.105283 AGGTTGTAGCCTAGTGGTAAGG 58.895 50.000 0.00 0.00 37.04 2.69
381 383 1.043673 AGCCTAGTGGTAAGGGAGCG 61.044 60.000 0.00 0.00 34.46 5.03
384 386 0.103208 CTAGTGGTAAGGGAGCGCAG 59.897 60.000 11.47 0.00 38.57 5.18
400 402 2.974698 AGTGGCGTCTGCAGCAAC 60.975 61.111 9.47 1.72 45.35 4.17
401 403 4.374702 GTGGCGTCTGCAGCAACG 62.375 66.667 20.28 20.28 45.35 4.10
403 405 3.782244 GGCGTCTGCAGCAACGAG 61.782 66.667 26.63 8.41 45.35 4.18
404 406 3.782244 GCGTCTGCAGCAACGAGG 61.782 66.667 26.63 14.43 41.29 4.63
405 407 3.114616 CGTCTGCAGCAACGAGGG 61.115 66.667 20.01 0.00 41.29 4.30
406 408 2.031163 GTCTGCAGCAACGAGGGT 59.969 61.111 9.47 0.00 0.00 4.34
407 409 1.598130 GTCTGCAGCAACGAGGGTT 60.598 57.895 9.47 0.00 36.63 4.11
408 410 1.301716 TCTGCAGCAACGAGGGTTC 60.302 57.895 9.47 0.00 32.98 3.62
418 420 2.126031 GAGGGTTCGAGCCACGTC 60.126 66.667 20.67 9.46 43.13 4.34
419 421 3.966026 GAGGGTTCGAGCCACGTCG 62.966 68.421 20.67 0.00 43.13 5.12
439 441 2.791655 GGGGACGAATTTCTGGTTTCT 58.208 47.619 0.00 0.00 0.00 2.52
440 442 2.747989 GGGGACGAATTTCTGGTTTCTC 59.252 50.000 0.00 0.00 0.00 2.87
441 443 3.408634 GGGACGAATTTCTGGTTTCTCA 58.591 45.455 0.00 0.00 0.00 3.27
442 444 4.010349 GGGACGAATTTCTGGTTTCTCAT 58.990 43.478 0.00 0.00 0.00 2.90
443 445 5.183228 GGGACGAATTTCTGGTTTCTCATA 58.817 41.667 0.00 0.00 0.00 2.15
444 446 5.646360 GGGACGAATTTCTGGTTTCTCATAA 59.354 40.000 0.00 0.00 0.00 1.90
445 447 6.183360 GGGACGAATTTCTGGTTTCTCATAAG 60.183 42.308 0.00 0.00 0.00 1.73
446 448 6.183360 GGACGAATTTCTGGTTTCTCATAAGG 60.183 42.308 0.00 0.00 0.00 2.69
447 449 5.648092 ACGAATTTCTGGTTTCTCATAAGGG 59.352 40.000 0.00 0.00 0.00 3.95
448 450 5.880332 CGAATTTCTGGTTTCTCATAAGGGA 59.120 40.000 0.00 0.00 0.00 4.20
449 451 6.543831 CGAATTTCTGGTTTCTCATAAGGGAT 59.456 38.462 0.00 0.00 0.00 3.85
450 452 7.467811 CGAATTTCTGGTTTCTCATAAGGGATG 60.468 40.741 0.00 0.00 36.82 3.51
451 453 4.156455 TCTGGTTTCTCATAAGGGATGC 57.844 45.455 0.00 0.00 35.29 3.91
452 454 3.782523 TCTGGTTTCTCATAAGGGATGCT 59.217 43.478 0.00 0.00 35.29 3.79
453 455 4.228210 TCTGGTTTCTCATAAGGGATGCTT 59.772 41.667 0.00 0.00 35.29 3.91
454 456 4.526970 TGGTTTCTCATAAGGGATGCTTC 58.473 43.478 0.00 0.00 35.29 3.86
455 457 4.228210 TGGTTTCTCATAAGGGATGCTTCT 59.772 41.667 0.00 0.00 35.29 2.85
456 458 4.819088 GGTTTCTCATAAGGGATGCTTCTC 59.181 45.833 0.00 0.00 35.29 2.87
457 459 4.696479 TTCTCATAAGGGATGCTTCTCC 57.304 45.455 0.00 0.00 35.29 3.71
458 460 3.933886 TCTCATAAGGGATGCTTCTCCT 58.066 45.455 0.00 0.25 35.29 3.69
459 461 5.079998 TCTCATAAGGGATGCTTCTCCTA 57.920 43.478 9.18 0.00 35.29 2.94
460 462 5.659503 TCTCATAAGGGATGCTTCTCCTAT 58.340 41.667 9.18 0.00 35.29 2.57
461 463 6.805150 TCTCATAAGGGATGCTTCTCCTATA 58.195 40.000 9.18 6.08 35.29 1.31
462 464 7.425834 TCTCATAAGGGATGCTTCTCCTATAT 58.574 38.462 9.18 7.47 35.29 0.86
463 465 7.563188 TCTCATAAGGGATGCTTCTCCTATATC 59.437 40.741 9.18 0.00 35.29 1.63
464 466 7.191918 TCATAAGGGATGCTTCTCCTATATCA 58.808 38.462 9.18 0.00 35.29 2.15
465 467 7.679881 TCATAAGGGATGCTTCTCCTATATCAA 59.320 37.037 9.18 1.91 35.29 2.57
466 468 6.966637 AAGGGATGCTTCTCCTATATCAAT 57.033 37.500 9.18 0.00 35.50 2.57
467 469 9.735362 ATAAGGGATGCTTCTCCTATATCAATA 57.265 33.333 9.18 0.26 35.50 1.90
468 470 8.454859 AAGGGATGCTTCTCCTATATCAATAA 57.545 34.615 9.18 0.00 35.50 1.40
469 471 7.856415 AGGGATGCTTCTCCTATATCAATAAC 58.144 38.462 7.56 0.00 35.50 1.89
470 472 7.051000 GGGATGCTTCTCCTATATCAATAACC 58.949 42.308 0.00 0.00 35.50 2.85
471 473 7.311297 GGGATGCTTCTCCTATATCAATAACCA 60.311 40.741 0.00 0.00 35.50 3.67
472 474 8.270744 GGATGCTTCTCCTATATCAATAACCAT 58.729 37.037 0.00 0.00 32.18 3.55
473 475 9.107177 GATGCTTCTCCTATATCAATAACCATG 57.893 37.037 0.00 0.00 0.00 3.66
474 476 7.397221 TGCTTCTCCTATATCAATAACCATGG 58.603 38.462 11.19 11.19 0.00 3.66
475 477 6.825721 GCTTCTCCTATATCAATAACCATGGG 59.174 42.308 18.09 0.00 0.00 4.00
476 478 7.529560 GCTTCTCCTATATCAATAACCATGGGT 60.530 40.741 18.09 13.37 37.65 4.51
477 479 7.257790 TCTCCTATATCAATAACCATGGGTG 57.742 40.000 14.24 6.60 35.34 4.61
478 480 5.815581 TCCTATATCAATAACCATGGGTGC 58.184 41.667 14.24 0.00 35.34 5.01
479 481 5.551583 TCCTATATCAATAACCATGGGTGCT 59.448 40.000 14.24 0.00 35.34 4.40
480 482 6.733334 TCCTATATCAATAACCATGGGTGCTA 59.267 38.462 14.24 2.95 35.34 3.49
481 483 7.050377 CCTATATCAATAACCATGGGTGCTAG 58.950 42.308 14.24 0.00 35.34 3.42
482 484 4.796110 ATCAATAACCATGGGTGCTAGT 57.204 40.909 14.24 0.00 35.34 2.57
483 485 3.884895 TCAATAACCATGGGTGCTAGTG 58.115 45.455 14.24 1.67 35.34 2.74
484 486 2.348411 ATAACCATGGGTGCTAGTGC 57.652 50.000 14.24 0.00 35.34 4.40
485 487 0.254747 TAACCATGGGTGCTAGTGCC 59.745 55.000 14.24 0.00 35.34 5.01
486 488 1.788518 AACCATGGGTGCTAGTGCCA 61.789 55.000 18.09 0.00 35.34 4.92
487 489 1.228228 CCATGGGTGCTAGTGCCAT 59.772 57.895 2.85 0.00 38.71 4.40
488 490 1.105167 CCATGGGTGCTAGTGCCATG 61.105 60.000 2.85 0.00 36.67 3.66
489 491 0.107066 CATGGGTGCTAGTGCCATGA 60.107 55.000 0.00 0.00 38.06 3.07
490 492 0.182061 ATGGGTGCTAGTGCCATGAG 59.818 55.000 0.00 0.00 38.71 2.90
491 493 1.200760 TGGGTGCTAGTGCCATGAGT 61.201 55.000 0.00 0.00 38.71 3.41
492 494 0.035056 GGGTGCTAGTGCCATGAGTT 60.035 55.000 0.00 0.00 38.71 3.01
520 522 2.564771 TCTGTGTGGACTTTTGAGCTG 58.435 47.619 0.00 0.00 0.00 4.24
522 524 2.547211 CTGTGTGGACTTTTGAGCTGAG 59.453 50.000 0.00 0.00 0.00 3.35
527 529 2.703536 TGGACTTTTGAGCTGAGTGGTA 59.296 45.455 0.00 0.00 0.00 3.25
528 530 3.327757 TGGACTTTTGAGCTGAGTGGTAT 59.672 43.478 0.00 0.00 0.00 2.73
529 531 4.530553 TGGACTTTTGAGCTGAGTGGTATA 59.469 41.667 0.00 0.00 0.00 1.47
530 532 5.189736 TGGACTTTTGAGCTGAGTGGTATAT 59.810 40.000 0.00 0.00 0.00 0.86
532 534 6.299805 ACTTTTGAGCTGAGTGGTATATGA 57.700 37.500 0.00 0.00 0.00 2.15
533 535 6.711277 ACTTTTGAGCTGAGTGGTATATGAA 58.289 36.000 0.00 0.00 0.00 2.57
535 537 5.939764 TTGAGCTGAGTGGTATATGAAGT 57.060 39.130 0.00 0.00 0.00 3.01
536 538 7.418337 TTTGAGCTGAGTGGTATATGAAGTA 57.582 36.000 0.00 0.00 0.00 2.24
537 539 6.392625 TGAGCTGAGTGGTATATGAAGTAC 57.607 41.667 0.00 0.00 0.00 2.73
538 540 5.008712 TGAGCTGAGTGGTATATGAAGTACG 59.991 44.000 0.00 0.00 0.00 3.67
567 569 4.037446 ACTTTTGTCATTGCGTACACCATT 59.963 37.500 0.00 0.00 0.00 3.16
625 627 2.537625 CCTCTTGAAACGATCGAGATGC 59.462 50.000 24.34 6.73 45.60 3.91
629 631 0.572590 GAAACGATCGAGATGCCGTG 59.427 55.000 24.34 0.00 35.28 4.94
630 632 1.421410 AAACGATCGAGATGCCGTGC 61.421 55.000 24.34 0.00 35.28 5.34
784 820 1.537562 GCTAATAACCCACTCGTCCCG 60.538 57.143 0.00 0.00 0.00 5.14
786 822 0.615544 AATAACCCACTCGTCCCGGA 60.616 55.000 0.73 0.00 0.00 5.14
788 824 2.430704 TAACCCACTCGTCCCGGACT 62.431 60.000 15.70 0.00 0.00 3.85
789 825 3.450115 CCCACTCGTCCCGGACTC 61.450 72.222 15.70 0.00 0.00 3.36
790 826 3.450115 CCACTCGTCCCGGACTCC 61.450 72.222 15.70 0.00 0.00 3.85
791 827 3.450115 CACTCGTCCCGGACTCCC 61.450 72.222 15.70 0.00 0.00 4.30
792 828 3.975591 ACTCGTCCCGGACTCCCA 61.976 66.667 15.70 0.00 0.00 4.37
793 829 3.141488 CTCGTCCCGGACTCCCAG 61.141 72.222 15.70 0.00 0.00 4.45
852 891 3.397955 AGATTATTTATCAACCCGGCCCT 59.602 43.478 0.00 0.00 35.59 5.19
926 965 2.870372 GCATGTTCCCTGCGTGTC 59.130 61.111 0.00 0.00 0.00 3.67
928 967 1.302431 CATGTTCCCTGCGTGTCCA 60.302 57.895 0.00 0.00 0.00 4.02
970 1020 1.072331 AGAAACGCAGACAGGACCAAT 59.928 47.619 0.00 0.00 0.00 3.16
1016 1066 0.924777 CGCGTATAAATGGACGTGCA 59.075 50.000 13.59 13.59 41.95 4.57
1037 1097 2.340078 GAGCAGCGTCTCCACACA 59.660 61.111 0.00 0.00 0.00 3.72
1038 1098 2.024319 GAGCAGCGTCTCCACACAC 61.024 63.158 0.00 0.00 0.00 3.82
1053 1114 0.461163 CACACCTCAACCACACGACA 60.461 55.000 0.00 0.00 0.00 4.35
1054 1115 0.461339 ACACCTCAACCACACGACAC 60.461 55.000 0.00 0.00 0.00 3.67
1055 1116 0.461163 CACCTCAACCACACGACACA 60.461 55.000 0.00 0.00 0.00 3.72
1056 1117 0.461339 ACCTCAACCACACGACACAC 60.461 55.000 0.00 0.00 0.00 3.82
1057 1118 0.461163 CCTCAACCACACGACACACA 60.461 55.000 0.00 0.00 0.00 3.72
1059 1120 0.037232 TCAACCACACGACACACACA 60.037 50.000 0.00 0.00 0.00 3.72
1060 1121 0.096281 CAACCACACGACACACACAC 59.904 55.000 0.00 0.00 0.00 3.82
1061 1122 0.320858 AACCACACGACACACACACA 60.321 50.000 0.00 0.00 0.00 3.72
1062 1123 0.107897 ACCACACGACACACACACAT 60.108 50.000 0.00 0.00 0.00 3.21
1063 1124 1.013596 CCACACGACACACACACATT 58.986 50.000 0.00 0.00 0.00 2.71
1085 1152 4.248842 TCCTGCCACCCACACACG 62.249 66.667 0.00 0.00 0.00 4.49
1112 1187 0.309302 CTACTGGGTCGATCGAGCTG 59.691 60.000 37.19 31.16 41.80 4.24
1115 1190 0.173481 CTGGGTCGATCGAGCTGAAA 59.827 55.000 37.19 22.96 41.80 2.69
1122 1199 1.224965 GATCGAGCTGAAAGATGGGC 58.775 55.000 0.00 0.00 34.07 5.36
1355 1448 4.501915 CCAGGTACGTGGAACTGTTTTCTA 60.502 45.833 26.98 0.00 40.44 2.10
1373 1466 8.015087 TGTTTTCTATATATGCATGTAAAGCGC 58.985 33.333 10.16 0.00 33.85 5.92
1714 1819 1.371558 GCCCGTCTTCAACCTCACT 59.628 57.895 0.00 0.00 0.00 3.41
2176 5943 0.672711 GGGTCGTCAACAAGTAGGGC 60.673 60.000 0.00 0.00 0.00 5.19
2192 5959 0.938008 GGGCTGCTCGCTATTTGTAC 59.062 55.000 0.00 0.00 39.13 2.90
2200 5967 7.095187 GGCTGCTCGCTATTTGTACTATTTAAT 60.095 37.037 0.00 0.00 39.13 1.40
2213 5980 7.843482 TGTACTATTTAATATTGGAACGTGCG 58.157 34.615 0.00 0.00 0.00 5.34
2227 5999 1.525197 ACGTGCGTGTATGTTGTTCTG 59.475 47.619 0.00 0.00 0.00 3.02
2237 6027 4.759183 TGTATGTTGTTCTGTTGCTGCATA 59.241 37.500 1.84 0.00 0.00 3.14
2253 6043 7.680442 TGCTGCATATTGTTAGTTTACTTGA 57.320 32.000 0.00 0.00 0.00 3.02
2316 6106 7.822334 TGATCAGGTTGTAATTCGATTAACAGT 59.178 33.333 0.00 0.00 0.00 3.55
2399 6193 4.883083 AGTCATCTACTGTCTTTGCGAAA 58.117 39.130 0.00 0.00 36.93 3.46
2451 6250 5.407502 GTTTTAGGTCCACCATTGCATTAC 58.592 41.667 0.00 0.00 38.89 1.89
2458 6257 3.053768 TCCACCATTGCATTACATCTCCA 60.054 43.478 0.00 0.00 0.00 3.86
2466 6265 4.122046 TGCATTACATCTCCAGTTCATCG 58.878 43.478 0.00 0.00 0.00 3.84
2471 6270 3.854666 ACATCTCCAGTTCATCGTTCAG 58.145 45.455 0.00 0.00 0.00 3.02
2472 6271 3.511540 ACATCTCCAGTTCATCGTTCAGA 59.488 43.478 0.00 0.00 0.00 3.27
2474 6273 4.808414 TCTCCAGTTCATCGTTCAGAAT 57.192 40.909 0.00 0.00 0.00 2.40
2480 6279 6.708502 TCCAGTTCATCGTTCAGAATGTTTAA 59.291 34.615 2.18 0.00 37.40 1.52
2506 6465 9.558396 AAAAGAGCCAATACAAATTTGATTTCA 57.442 25.926 24.64 4.69 0.00 2.69
2507 6466 9.729281 AAAGAGCCAATACAAATTTGATTTCAT 57.271 25.926 24.64 3.62 0.00 2.57
2509 6468 9.807649 AGAGCCAATACAAATTTGATTTCATAC 57.192 29.630 24.64 9.78 0.00 2.39
2565 6534 5.401531 TGTGAAATACTCCCTCTGTACAC 57.598 43.478 0.00 0.00 0.00 2.90
2595 6564 2.086094 ACGTTTTTCCAGTTCCACGTT 58.914 42.857 0.00 0.00 37.59 3.99
2609 6578 3.246619 TCCACGTTGTTTTTGCAGTTTC 58.753 40.909 0.00 0.00 0.00 2.78
2610 6579 3.057174 TCCACGTTGTTTTTGCAGTTTCT 60.057 39.130 0.00 0.00 0.00 2.52
2611 6580 3.303229 CCACGTTGTTTTTGCAGTTTCTC 59.697 43.478 0.00 0.00 0.00 2.87
2612 6581 3.917380 CACGTTGTTTTTGCAGTTTCTCA 59.083 39.130 0.00 0.00 0.00 3.27
2613 6582 4.562394 CACGTTGTTTTTGCAGTTTCTCAT 59.438 37.500 0.00 0.00 0.00 2.90
2614 6583 5.741510 CACGTTGTTTTTGCAGTTTCTCATA 59.258 36.000 0.00 0.00 0.00 2.15
2615 6584 6.417635 CACGTTGTTTTTGCAGTTTCTCATAT 59.582 34.615 0.00 0.00 0.00 1.78
2616 6585 6.417635 ACGTTGTTTTTGCAGTTTCTCATATG 59.582 34.615 0.00 0.00 0.00 1.78
2617 6586 6.417635 CGTTGTTTTTGCAGTTTCTCATATGT 59.582 34.615 1.90 0.00 0.00 2.29
2618 6587 7.558137 GTTGTTTTTGCAGTTTCTCATATGTG 58.442 34.615 1.90 0.00 0.00 3.21
2619 6588 5.691305 TGTTTTTGCAGTTTCTCATATGTGC 59.309 36.000 1.90 4.76 0.00 4.57
2620 6589 5.450592 TTTTGCAGTTTCTCATATGTGCA 57.549 34.783 11.22 11.22 39.08 4.57
2621 6590 4.690184 TTGCAGTTTCTCATATGTGCAG 57.310 40.909 13.93 0.92 41.61 4.41
2622 6591 3.678289 TGCAGTTTCTCATATGTGCAGT 58.322 40.909 11.22 0.00 36.05 4.40
2623 6592 4.074259 TGCAGTTTCTCATATGTGCAGTT 58.926 39.130 11.22 0.00 36.05 3.16
2624 6593 4.154737 TGCAGTTTCTCATATGTGCAGTTC 59.845 41.667 11.22 0.00 36.05 3.01
2630 6599 4.256110 TCTCATATGTGCAGTTCAAGTGG 58.744 43.478 1.90 0.00 0.00 4.00
2651 6620 7.796958 GTGGAACTGCAAAAATGTCTTATAC 57.203 36.000 0.00 0.00 0.00 1.47
2652 6621 7.593825 GTGGAACTGCAAAAATGTCTTATACT 58.406 34.615 0.00 0.00 0.00 2.12
2653 6622 8.082242 GTGGAACTGCAAAAATGTCTTATACTT 58.918 33.333 0.00 0.00 0.00 2.24
2757 6728 7.852971 TTTTTGTACTCTATTTATGGTCCGG 57.147 36.000 0.00 0.00 0.00 5.14
2758 6729 6.549433 TTTGTACTCTATTTATGGTCCGGT 57.451 37.500 0.00 0.00 0.00 5.28
2759 6730 6.549433 TTGTACTCTATTTATGGTCCGGTT 57.451 37.500 0.00 0.00 0.00 4.44
2760 6731 5.909477 TGTACTCTATTTATGGTCCGGTTG 58.091 41.667 0.00 0.00 0.00 3.77
2761 6732 4.417426 ACTCTATTTATGGTCCGGTTGG 57.583 45.455 0.00 0.00 0.00 3.77
2762 6733 3.778629 ACTCTATTTATGGTCCGGTTGGT 59.221 43.478 0.00 0.00 36.30 3.67
2763 6734 4.226620 ACTCTATTTATGGTCCGGTTGGTT 59.773 41.667 0.00 0.00 36.30 3.67
2764 6735 4.519213 TCTATTTATGGTCCGGTTGGTTG 58.481 43.478 0.00 0.00 36.30 3.77
2765 6736 1.249407 TTTATGGTCCGGTTGGTTGC 58.751 50.000 0.00 0.00 36.30 4.17
2766 6737 0.402504 TTATGGTCCGGTTGGTTGCT 59.597 50.000 0.00 0.00 36.30 3.91
2767 6738 0.402504 TATGGTCCGGTTGGTTGCTT 59.597 50.000 0.00 0.00 36.30 3.91
2768 6739 0.469144 ATGGTCCGGTTGGTTGCTTT 60.469 50.000 0.00 0.00 36.30 3.51
2769 6740 1.362355 GGTCCGGTTGGTTGCTTTG 59.638 57.895 0.00 0.00 36.30 2.77
2770 6741 1.388837 GGTCCGGTTGGTTGCTTTGT 61.389 55.000 0.00 0.00 36.30 2.83
2771 6742 1.310904 GTCCGGTTGGTTGCTTTGTA 58.689 50.000 0.00 0.00 36.30 2.41
2772 6743 1.883926 GTCCGGTTGGTTGCTTTGTAT 59.116 47.619 0.00 0.00 36.30 2.29
2773 6744 3.075884 GTCCGGTTGGTTGCTTTGTATA 58.924 45.455 0.00 0.00 36.30 1.47
2774 6745 3.075884 TCCGGTTGGTTGCTTTGTATAC 58.924 45.455 0.00 0.00 36.30 1.47
2775 6746 2.814919 CCGGTTGGTTGCTTTGTATACA 59.185 45.455 0.08 0.08 0.00 2.29
2776 6747 3.253677 CCGGTTGGTTGCTTTGTATACAA 59.746 43.478 14.35 14.35 0.00 2.41
2777 6748 4.261656 CCGGTTGGTTGCTTTGTATACAAA 60.262 41.667 25.48 25.48 42.90 2.83
2804 6775 2.097036 GGAAACCCCTTTTCGGTATGG 58.903 52.381 0.00 0.00 44.20 2.74
2805 6776 2.097036 GAAACCCCTTTTCGGTATGGG 58.903 52.381 0.00 0.00 42.23 4.00
2806 6777 2.795406 ACCCCTTTTCGGTATGGGT 58.205 52.632 0.00 0.00 44.66 4.51
2807 6778 0.622136 ACCCCTTTTCGGTATGGGTC 59.378 55.000 0.00 0.00 46.55 4.46
2808 6779 0.106868 CCCCTTTTCGGTATGGGTCC 60.107 60.000 0.00 0.00 38.03 4.46
2809 6780 0.621609 CCCTTTTCGGTATGGGTCCA 59.378 55.000 0.00 0.00 35.13 4.02
2810 6781 1.004979 CCCTTTTCGGTATGGGTCCAA 59.995 52.381 0.00 0.00 35.13 3.53
2811 6782 2.365582 CCTTTTCGGTATGGGTCCAAG 58.634 52.381 0.00 0.00 0.00 3.61
2812 6783 2.290705 CCTTTTCGGTATGGGTCCAAGT 60.291 50.000 0.00 0.00 0.00 3.16
2813 6784 3.418047 CTTTTCGGTATGGGTCCAAGTT 58.582 45.455 0.00 0.00 0.00 2.66
2814 6785 3.512219 TTTCGGTATGGGTCCAAGTTT 57.488 42.857 0.00 0.00 0.00 2.66
2815 6786 2.483014 TCGGTATGGGTCCAAGTTTG 57.517 50.000 0.00 0.00 0.00 2.93
2816 6787 1.979308 TCGGTATGGGTCCAAGTTTGA 59.021 47.619 0.00 0.00 0.00 2.69
2817 6788 2.027561 TCGGTATGGGTCCAAGTTTGAG 60.028 50.000 0.00 0.00 0.00 3.02
2818 6789 2.290071 CGGTATGGGTCCAAGTTTGAGT 60.290 50.000 0.00 0.00 0.00 3.41
2819 6790 3.055675 CGGTATGGGTCCAAGTTTGAGTA 60.056 47.826 0.00 0.00 0.00 2.59
2915 6887 2.637383 GCCGTCTTCCAGTCGACCT 61.637 63.158 13.01 0.00 0.00 3.85
2976 6949 1.340248 GAAGACTCACTCGACCACCAA 59.660 52.381 0.00 0.00 0.00 3.67
3124 7098 4.021925 GCTGGGGTCTTGGCGTCT 62.022 66.667 0.00 0.00 0.00 4.18
3190 7166 6.127168 CCCCTGTAACTCTCACACACATAATA 60.127 42.308 0.00 0.00 0.00 0.98
3333 7309 2.966516 CCCCCTATTCTACTGTCAGACC 59.033 54.545 6.91 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.121305 TGAACTTACATGGATTTTTAGCATGT 57.879 30.769 0.00 0.00 39.46 3.21
7 8 9.349713 TCTACAGTTGAACTTACATGGATTTTT 57.650 29.630 0.00 0.00 0.00 1.94
24 25 9.341899 GTTTTGCTACCAATAATTCTACAGTTG 57.658 33.333 0.00 0.00 0.00 3.16
27 28 8.398665 GGAGTTTTGCTACCAATAATTCTACAG 58.601 37.037 0.00 0.00 0.00 2.74
91 92 1.109609 AACCGGTAGTTCGATCCCTC 58.890 55.000 8.00 0.00 30.99 4.30
173 174 0.523072 ATCGTGCACCAGTTTGATGC 59.477 50.000 12.15 0.00 37.42 3.91
193 194 4.262938 CCAGTGTGATCTATGCATGGATCT 60.263 45.833 37.42 23.50 42.97 2.75
241 243 4.509970 CCGACGCCTCATAATTTGTTCATA 59.490 41.667 0.00 0.00 0.00 2.15
317 319 6.266330 CCACACAGAAGGATGATCATACTAGA 59.734 42.308 21.04 0.00 30.12 2.43
318 320 6.266330 TCCACACAGAAGGATGATCATACTAG 59.734 42.308 21.04 15.42 30.12 2.57
319 321 6.040955 GTCCACACAGAAGGATGATCATACTA 59.959 42.308 21.04 0.00 36.11 1.82
320 322 4.964897 TCCACACAGAAGGATGATCATACT 59.035 41.667 15.18 15.18 32.05 2.12
321 323 5.053145 GTCCACACAGAAGGATGATCATAC 58.947 45.833 10.19 10.19 36.11 2.39
325 327 3.902881 AGTCCACACAGAAGGATGATC 57.097 47.619 0.00 0.00 36.11 2.92
326 328 4.042062 TCAAAGTCCACACAGAAGGATGAT 59.958 41.667 0.00 0.00 36.11 2.45
327 329 3.390967 TCAAAGTCCACACAGAAGGATGA 59.609 43.478 0.00 0.00 36.11 2.92
328 330 3.743521 TCAAAGTCCACACAGAAGGATG 58.256 45.455 0.00 0.00 36.11 3.51
335 337 4.202264 ACCTAGTTCTCAAAGTCCACACAG 60.202 45.833 0.00 0.00 0.00 3.66
354 356 4.284178 CCTTACCACTAGGCTACAACCTA 58.716 47.826 0.00 0.00 41.50 3.08
355 357 3.105283 CCTTACCACTAGGCTACAACCT 58.895 50.000 0.00 0.00 44.31 3.50
356 358 2.169978 CCCTTACCACTAGGCTACAACC 59.830 54.545 0.00 0.00 39.06 3.77
357 359 3.102204 TCCCTTACCACTAGGCTACAAC 58.898 50.000 0.00 0.00 39.06 3.32
358 360 3.371965 CTCCCTTACCACTAGGCTACAA 58.628 50.000 0.00 0.00 39.06 2.41
359 361 2.953620 GCTCCCTTACCACTAGGCTACA 60.954 54.545 0.00 0.00 39.06 2.74
360 362 1.687660 GCTCCCTTACCACTAGGCTAC 59.312 57.143 0.00 0.00 39.06 3.58
361 363 1.753141 CGCTCCCTTACCACTAGGCTA 60.753 57.143 0.00 0.00 39.06 3.93
362 364 1.043673 CGCTCCCTTACCACTAGGCT 61.044 60.000 0.00 0.00 39.06 4.58
363 365 1.442148 CGCTCCCTTACCACTAGGC 59.558 63.158 0.00 0.00 39.06 3.93
364 366 1.327690 TGCGCTCCCTTACCACTAGG 61.328 60.000 9.73 0.00 42.21 3.02
365 367 0.103208 CTGCGCTCCCTTACCACTAG 59.897 60.000 9.73 0.00 0.00 2.57
366 368 0.613853 ACTGCGCTCCCTTACCACTA 60.614 55.000 9.73 0.00 0.00 2.74
367 369 1.913762 ACTGCGCTCCCTTACCACT 60.914 57.895 9.73 0.00 0.00 4.00
368 370 1.741770 CACTGCGCTCCCTTACCAC 60.742 63.158 9.73 0.00 0.00 4.16
369 371 2.662596 CACTGCGCTCCCTTACCA 59.337 61.111 9.73 0.00 0.00 3.25
370 372 2.125106 CCACTGCGCTCCCTTACC 60.125 66.667 9.73 0.00 0.00 2.85
371 373 2.820037 GCCACTGCGCTCCCTTAC 60.820 66.667 9.73 0.00 0.00 2.34
384 386 4.374702 CGTTGCTGCAGACGCCAC 62.375 66.667 20.43 4.08 37.32 5.01
390 392 1.301716 GAACCCTCGTTGCTGCAGA 60.302 57.895 20.43 0.00 30.30 4.26
392 394 2.664851 CGAACCCTCGTTGCTGCA 60.665 61.111 0.00 0.00 40.33 4.41
396 398 3.119096 GGCTCGAACCCTCGTTGC 61.119 66.667 0.00 1.48 45.62 4.17
397 399 2.027625 GTGGCTCGAACCCTCGTTG 61.028 63.158 1.61 0.00 45.62 4.10
398 400 2.342648 GTGGCTCGAACCCTCGTT 59.657 61.111 1.61 0.00 45.62 3.85
400 402 3.966026 GACGTGGCTCGAACCCTCG 62.966 68.421 16.57 18.83 46.87 4.63
401 403 2.126031 GACGTGGCTCGAACCCTC 60.126 66.667 16.57 0.00 42.86 4.30
416 418 0.036671 ACCAGAAATTCGTCCCCGAC 60.037 55.000 0.00 0.00 44.13 4.79
417 419 0.688487 AACCAGAAATTCGTCCCCGA 59.312 50.000 0.00 0.00 42.41 5.14
418 420 1.467342 GAAACCAGAAATTCGTCCCCG 59.533 52.381 0.00 0.00 0.00 5.73
419 421 2.747989 GAGAAACCAGAAATTCGTCCCC 59.252 50.000 0.00 0.00 0.00 4.81
420 422 3.408634 TGAGAAACCAGAAATTCGTCCC 58.591 45.455 0.00 0.00 0.00 4.46
421 423 6.183360 CCTTATGAGAAACCAGAAATTCGTCC 60.183 42.308 0.00 0.00 0.00 4.79
422 424 6.183360 CCCTTATGAGAAACCAGAAATTCGTC 60.183 42.308 0.00 0.00 0.00 4.20
423 425 5.648092 CCCTTATGAGAAACCAGAAATTCGT 59.352 40.000 0.00 0.00 0.00 3.85
424 426 5.880332 TCCCTTATGAGAAACCAGAAATTCG 59.120 40.000 0.00 0.00 0.00 3.34
427 429 5.595952 GCATCCCTTATGAGAAACCAGAAAT 59.404 40.000 0.00 0.00 37.86 2.17
428 430 4.949856 GCATCCCTTATGAGAAACCAGAAA 59.050 41.667 0.00 0.00 37.86 2.52
430 432 3.782523 AGCATCCCTTATGAGAAACCAGA 59.217 43.478 0.00 0.00 37.86 3.86
431 433 4.162040 AGCATCCCTTATGAGAAACCAG 57.838 45.455 0.00 0.00 37.86 4.00
432 434 4.228210 AGAAGCATCCCTTATGAGAAACCA 59.772 41.667 0.00 0.00 37.86 3.67
434 436 4.819088 GGAGAAGCATCCCTTATGAGAAAC 59.181 45.833 0.00 0.00 37.86 2.78
435 437 4.723789 AGGAGAAGCATCCCTTATGAGAAA 59.276 41.667 0.00 0.00 40.53 2.52
436 438 4.302067 AGGAGAAGCATCCCTTATGAGAA 58.698 43.478 0.00 0.00 40.53 2.87
437 439 3.933886 AGGAGAAGCATCCCTTATGAGA 58.066 45.455 0.00 0.00 40.53 3.27
438 440 7.344093 TGATATAGGAGAAGCATCCCTTATGAG 59.656 40.741 4.62 0.00 40.53 2.90
439 441 7.191918 TGATATAGGAGAAGCATCCCTTATGA 58.808 38.462 4.62 0.00 40.53 2.15
440 442 7.429374 TGATATAGGAGAAGCATCCCTTATG 57.571 40.000 4.62 0.00 40.53 1.90
441 443 8.635647 ATTGATATAGGAGAAGCATCCCTTAT 57.364 34.615 4.62 0.00 40.53 1.73
442 444 9.560860 TTATTGATATAGGAGAAGCATCCCTTA 57.439 33.333 4.62 0.00 40.53 2.69
443 445 6.966637 ATTGATATAGGAGAAGCATCCCTT 57.033 37.500 4.62 0.00 40.53 3.95
444 446 7.092668 GGTTATTGATATAGGAGAAGCATCCCT 60.093 40.741 4.70 4.70 40.53 4.20
445 447 7.051000 GGTTATTGATATAGGAGAAGCATCCC 58.949 42.308 0.00 0.00 40.53 3.85
446 448 7.624549 TGGTTATTGATATAGGAGAAGCATCC 58.375 38.462 0.00 0.00 39.89 3.51
447 449 9.107177 CATGGTTATTGATATAGGAGAAGCATC 57.893 37.037 0.00 0.00 32.81 3.91
448 450 8.051535 CCATGGTTATTGATATAGGAGAAGCAT 58.948 37.037 2.57 0.00 34.77 3.79
449 451 7.397221 CCATGGTTATTGATATAGGAGAAGCA 58.603 38.462 2.57 0.00 0.00 3.91
450 452 6.825721 CCCATGGTTATTGATATAGGAGAAGC 59.174 42.308 11.73 0.00 0.00 3.86
451 453 7.826252 CACCCATGGTTATTGATATAGGAGAAG 59.174 40.741 11.73 0.00 31.02 2.85
452 454 7.689299 CACCCATGGTTATTGATATAGGAGAA 58.311 38.462 11.73 0.00 31.02 2.87
453 455 6.296432 GCACCCATGGTTATTGATATAGGAGA 60.296 42.308 11.73 0.00 31.02 3.71
454 456 5.882557 GCACCCATGGTTATTGATATAGGAG 59.117 44.000 11.73 0.00 31.02 3.69
455 457 5.551583 AGCACCCATGGTTATTGATATAGGA 59.448 40.000 11.73 0.00 31.02 2.94
456 458 5.819991 AGCACCCATGGTTATTGATATAGG 58.180 41.667 11.73 0.00 31.02 2.57
457 459 7.550551 CACTAGCACCCATGGTTATTGATATAG 59.449 40.741 11.73 7.89 37.77 1.31
458 460 7.394016 CACTAGCACCCATGGTTATTGATATA 58.606 38.462 11.73 0.00 37.77 0.86
459 461 6.240894 CACTAGCACCCATGGTTATTGATAT 58.759 40.000 11.73 0.00 37.77 1.63
460 462 5.620206 CACTAGCACCCATGGTTATTGATA 58.380 41.667 11.73 4.54 37.77 2.15
461 463 4.464008 CACTAGCACCCATGGTTATTGAT 58.536 43.478 11.73 3.53 37.77 2.57
462 464 3.884895 CACTAGCACCCATGGTTATTGA 58.115 45.455 11.73 0.00 37.77 2.57
463 465 2.358898 GCACTAGCACCCATGGTTATTG 59.641 50.000 11.73 3.31 41.58 1.90
464 466 2.654863 GCACTAGCACCCATGGTTATT 58.345 47.619 11.73 0.00 41.58 1.40
465 467 1.133792 GGCACTAGCACCCATGGTTAT 60.134 52.381 11.73 0.00 44.61 1.89
466 468 0.254747 GGCACTAGCACCCATGGTTA 59.745 55.000 11.73 0.00 44.61 2.85
467 469 1.000896 GGCACTAGCACCCATGGTT 60.001 57.895 11.73 0.00 44.61 3.67
468 470 1.574526 ATGGCACTAGCACCCATGGT 61.575 55.000 11.73 0.00 44.61 3.55
469 471 1.228228 ATGGCACTAGCACCCATGG 59.772 57.895 4.14 4.14 44.61 3.66
470 472 2.411535 CATGGCACTAGCACCCATG 58.588 57.895 17.38 17.38 46.89 3.66
471 473 0.182061 CTCATGGCACTAGCACCCAT 59.818 55.000 0.00 4.13 44.61 4.00
472 474 1.200760 ACTCATGGCACTAGCACCCA 61.201 55.000 0.00 0.00 44.61 4.51
473 475 0.035056 AACTCATGGCACTAGCACCC 60.035 55.000 0.00 0.00 44.61 4.61
474 476 1.740025 GAAACTCATGGCACTAGCACC 59.260 52.381 0.00 0.00 44.61 5.01
475 477 2.426522 TGAAACTCATGGCACTAGCAC 58.573 47.619 0.00 0.00 44.61 4.40
476 478 2.857186 TGAAACTCATGGCACTAGCA 57.143 45.000 0.00 0.00 44.61 3.49
477 479 2.615912 GGATGAAACTCATGGCACTAGC 59.384 50.000 0.00 0.00 37.20 3.42
478 480 4.148128 AGGATGAAACTCATGGCACTAG 57.852 45.455 0.00 0.00 37.20 2.57
479 481 4.225942 AGAAGGATGAAACTCATGGCACTA 59.774 41.667 0.00 0.00 37.20 2.74
480 482 3.009916 AGAAGGATGAAACTCATGGCACT 59.990 43.478 0.00 0.00 37.20 4.40
481 483 3.128242 CAGAAGGATGAAACTCATGGCAC 59.872 47.826 0.00 0.00 37.20 5.01
482 484 3.245016 ACAGAAGGATGAAACTCATGGCA 60.245 43.478 0.00 0.00 37.20 4.92
483 485 3.128242 CACAGAAGGATGAAACTCATGGC 59.872 47.826 0.00 0.00 37.20 4.40
484 486 4.155462 CACACAGAAGGATGAAACTCATGG 59.845 45.833 0.00 0.00 37.20 3.66
485 487 4.155462 CCACACAGAAGGATGAAACTCATG 59.845 45.833 0.00 0.00 37.20 3.07
486 488 4.042062 TCCACACAGAAGGATGAAACTCAT 59.958 41.667 0.00 0.00 40.34 2.90
487 489 3.390967 TCCACACAGAAGGATGAAACTCA 59.609 43.478 0.00 0.00 0.00 3.41
488 490 3.748568 GTCCACACAGAAGGATGAAACTC 59.251 47.826 0.00 0.00 36.11 3.01
489 491 3.392616 AGTCCACACAGAAGGATGAAACT 59.607 43.478 0.00 0.00 36.11 2.66
490 492 3.744660 AGTCCACACAGAAGGATGAAAC 58.255 45.455 0.00 0.00 36.11 2.78
491 493 4.437682 AAGTCCACACAGAAGGATGAAA 57.562 40.909 0.00 0.00 36.11 2.69
492 494 4.437682 AAAGTCCACACAGAAGGATGAA 57.562 40.909 0.00 0.00 36.11 2.57
520 522 6.292389 ACGTACGTACTTCATATACCACTC 57.708 41.667 21.41 0.00 0.00 3.51
535 537 4.088355 CGCAATGACAAAAGTACGTACGTA 59.912 41.667 23.60 23.60 0.00 3.57
536 538 3.121261 CGCAATGACAAAAGTACGTACGT 60.121 43.478 25.98 25.98 0.00 3.57
537 539 3.121261 ACGCAATGACAAAAGTACGTACG 60.121 43.478 19.49 15.01 0.00 3.67
538 540 4.379374 ACGCAATGACAAAAGTACGTAC 57.621 40.909 18.10 18.10 0.00 3.67
567 569 2.228582 CGAATTTGCTGGACATTGGACA 59.771 45.455 0.00 0.00 0.00 4.02
625 627 1.588674 TTGTTTACTCCACAGCACGG 58.411 50.000 0.00 0.00 0.00 4.94
629 631 4.537015 GACATGTTTGTTTACTCCACAGC 58.463 43.478 0.00 0.00 35.79 4.40
630 632 4.772434 CGACATGTTTGTTTACTCCACAG 58.228 43.478 0.00 0.00 35.79 3.66
665 680 6.091441 GTCTGAATTTGATGTCTCCAGTGTAC 59.909 42.308 0.00 0.00 0.00 2.90
666 681 6.014242 AGTCTGAATTTGATGTCTCCAGTGTA 60.014 38.462 0.00 0.00 0.00 2.90
784 820 3.776616 CAGATCTTGCTGGGAGTCC 57.223 57.895 0.00 0.00 32.26 3.85
792 828 6.745613 ATGTAGGCATGTGCAGATCTTGCT 62.746 45.833 14.34 5.35 42.75 3.91
793 829 4.550398 ATGTAGGCATGTGCAGATCTTGC 61.550 47.826 7.66 7.66 42.68 4.01
794 830 2.635714 TGTAGGCATGTGCAGATCTTG 58.364 47.619 7.36 0.00 44.36 3.02
795 831 3.118149 TGATGTAGGCATGTGCAGATCTT 60.118 43.478 7.36 0.00 44.36 2.40
852 891 1.593196 CGCTGACTTCAAGGAAACCA 58.407 50.000 0.00 0.00 0.00 3.67
923 962 0.321919 GCAGAGCATGTTCCTGGACA 60.322 55.000 5.87 0.00 0.00 4.02
924 963 1.028868 GGCAGAGCATGTTCCTGGAC 61.029 60.000 5.87 0.00 0.00 4.02
925 964 1.300963 GGCAGAGCATGTTCCTGGA 59.699 57.895 5.87 0.00 0.00 3.86
926 965 1.751927 GGGCAGAGCATGTTCCTGG 60.752 63.158 5.87 0.00 0.00 4.45
928 967 1.630126 ATCGGGCAGAGCATGTTCCT 61.630 55.000 5.87 0.00 0.00 3.36
970 1020 1.306997 AAGGAGAATCGGCAGGGGA 60.307 57.895 0.00 0.00 34.37 4.81
979 1029 0.466124 CGGGGGACTGAAGGAGAATC 59.534 60.000 0.00 0.00 39.98 2.52
1037 1097 0.461339 GTGTGTCGTGTGGTTGAGGT 60.461 55.000 0.00 0.00 0.00 3.85
1038 1098 0.461163 TGTGTGTCGTGTGGTTGAGG 60.461 55.000 0.00 0.00 0.00 3.86
1053 1114 1.949525 GCAGGAGACAAATGTGTGTGT 59.050 47.619 0.00 0.00 38.41 3.72
1054 1115 1.267806 GGCAGGAGACAAATGTGTGTG 59.732 52.381 0.00 0.00 38.41 3.82
1055 1116 1.133823 TGGCAGGAGACAAATGTGTGT 60.134 47.619 0.00 0.00 38.41 3.72
1056 1117 1.267806 GTGGCAGGAGACAAATGTGTG 59.732 52.381 0.00 0.00 38.41 3.82
1057 1118 1.609208 GTGGCAGGAGACAAATGTGT 58.391 50.000 0.00 0.00 42.10 3.72
1059 1120 0.251341 GGGTGGCAGGAGACAAATGT 60.251 55.000 0.00 0.00 31.85 2.71
1060 1121 0.251297 TGGGTGGCAGGAGACAAATG 60.251 55.000 0.00 0.00 31.85 2.32
1061 1122 0.251341 GTGGGTGGCAGGAGACAAAT 60.251 55.000 0.00 0.00 31.85 2.32
1062 1123 1.150536 GTGGGTGGCAGGAGACAAA 59.849 57.895 0.00 0.00 31.85 2.83
1063 1124 2.075566 TGTGGGTGGCAGGAGACAA 61.076 57.895 0.00 0.00 31.85 3.18
1085 1152 2.809010 GACCCAGTAGAGCCGAGC 59.191 66.667 0.00 0.00 0.00 5.03
1112 1187 1.893062 GCAACCCTGCCCATCTTTC 59.107 57.895 0.00 0.00 43.26 2.62
1115 1190 2.615227 GATCGCAACCCTGCCCATCT 62.615 60.000 0.00 0.00 46.56 2.90
1122 1199 0.467384 AGATCCAGATCGCAACCCTG 59.533 55.000 2.08 0.00 42.48 4.45
1355 1448 3.334691 ACGGCGCTTTACATGCATATAT 58.665 40.909 6.90 0.00 0.00 0.86
1397 1493 2.196776 ACAGCCCTGCACAAAGCT 59.803 55.556 0.00 0.00 45.94 3.74
1714 1819 1.210413 GAAGCTGTCGACGAGCTGA 59.790 57.895 30.08 6.99 46.32 4.26
2032 5796 2.344025 GCGTTCTCCATAACCTTCGTT 58.656 47.619 0.00 0.00 35.90 3.85
2192 5959 6.711579 ACACGCACGTTCCAATATTAAATAG 58.288 36.000 0.00 0.00 0.00 1.73
2200 5967 2.962125 ACATACACGCACGTTCCAATA 58.038 42.857 0.00 0.00 0.00 1.90
2213 5980 3.243035 TGCAGCAACAGAACAACATACAC 60.243 43.478 0.00 0.00 0.00 2.90
2227 5999 8.020819 TCAAGTAAACTAACAATATGCAGCAAC 58.979 33.333 0.00 0.00 0.00 4.17
2237 6027 9.884636 AAAAAGGCTTTCAAGTAAACTAACAAT 57.115 25.926 13.76 0.00 0.00 2.71
2253 6043 7.518161 CAAAAGAAACGAAAGAAAAAGGCTTT 58.482 30.769 6.68 6.68 38.22 3.51
2260 6050 4.926238 TGCAGCAAAAGAAACGAAAGAAAA 59.074 33.333 0.00 0.00 0.00 2.29
2399 6193 1.745087 CAAGTCGCCCACATAAATGCT 59.255 47.619 0.00 0.00 0.00 3.79
2432 6231 4.165950 AGATGTAATGCAATGGTGGACCTA 59.834 41.667 0.00 0.00 36.82 3.08
2437 6236 3.289836 TGGAGATGTAATGCAATGGTGG 58.710 45.455 0.00 0.00 0.00 4.61
2439 6238 4.240881 ACTGGAGATGTAATGCAATGGT 57.759 40.909 0.00 0.00 0.00 3.55
2441 6240 5.823209 TGAACTGGAGATGTAATGCAATG 57.177 39.130 0.00 0.00 0.00 2.82
2451 6250 4.115401 TCTGAACGATGAACTGGAGATG 57.885 45.455 0.00 0.00 0.00 2.90
2458 6257 9.450807 CTTTTTAAACATTCTGAACGATGAACT 57.549 29.630 0.00 0.00 0.00 3.01
2466 6265 8.593492 ATTGGCTCTTTTTAAACATTCTGAAC 57.407 30.769 0.00 0.00 0.00 3.18
2480 6279 9.558396 TGAAATCAAATTTGTATTGGCTCTTTT 57.442 25.926 17.47 4.38 31.47 2.27
2540 6509 4.287766 ACAGAGGGAGTATTTCACAACC 57.712 45.455 0.00 0.00 0.00 3.77
2575 6544 1.741528 ACGTGGAACTGGAAAAACGT 58.258 45.000 0.00 0.00 39.24 3.99
2583 6552 1.923864 GCAAAAACAACGTGGAACTGG 59.076 47.619 0.00 0.00 31.75 4.00
2584 6553 2.598192 CTGCAAAAACAACGTGGAACTG 59.402 45.455 0.00 0.00 31.75 3.16
2585 6554 2.230266 ACTGCAAAAACAACGTGGAACT 59.770 40.909 0.00 0.00 31.75 3.01
2592 6561 6.417635 ACATATGAGAAACTGCAAAAACAACG 59.582 34.615 10.38 0.00 0.00 4.10
2595 6564 5.691305 GCACATATGAGAAACTGCAAAAACA 59.309 36.000 10.38 0.00 0.00 2.83
2609 6578 4.256110 TCCACTTGAACTGCACATATGAG 58.744 43.478 10.38 2.11 0.00 2.90
2610 6579 4.284829 TCCACTTGAACTGCACATATGA 57.715 40.909 10.38 0.00 0.00 2.15
2622 6591 5.083533 ACATTTTTGCAGTTCCACTTGAA 57.916 34.783 0.00 0.00 0.00 2.69
2623 6592 4.402155 AGACATTTTTGCAGTTCCACTTGA 59.598 37.500 0.00 0.00 0.00 3.02
2624 6593 4.685924 AGACATTTTTGCAGTTCCACTTG 58.314 39.130 0.00 0.00 0.00 3.16
2663 6632 8.880244 TCATTATATTTGGTGCTACCTCTGTAT 58.120 33.333 6.83 3.94 39.58 2.29
2675 6644 7.707464 TGAAAGCATTGCTCATTATATTTGGTG 59.293 33.333 12.39 0.00 38.25 4.17
2736 6707 6.342906 CAACCGGACCATAAATAGAGTACAA 58.657 40.000 9.46 0.00 0.00 2.41
2739 6710 4.964262 ACCAACCGGACCATAAATAGAGTA 59.036 41.667 9.46 0.00 35.59 2.59
2740 6711 3.778629 ACCAACCGGACCATAAATAGAGT 59.221 43.478 9.46 0.00 35.59 3.24
2741 6712 4.417426 ACCAACCGGACCATAAATAGAG 57.583 45.455 9.46 0.00 35.59 2.43
2742 6713 4.519213 CAACCAACCGGACCATAAATAGA 58.481 43.478 9.46 0.00 35.59 1.98
2743 6714 3.066203 GCAACCAACCGGACCATAAATAG 59.934 47.826 9.46 0.00 35.59 1.73
2744 6715 3.018149 GCAACCAACCGGACCATAAATA 58.982 45.455 9.46 0.00 35.59 1.40
2745 6716 1.822371 GCAACCAACCGGACCATAAAT 59.178 47.619 9.46 0.00 35.59 1.40
2746 6717 1.202952 AGCAACCAACCGGACCATAAA 60.203 47.619 9.46 0.00 35.59 1.40
2747 6718 0.402504 AGCAACCAACCGGACCATAA 59.597 50.000 9.46 0.00 35.59 1.90
2748 6719 0.402504 AAGCAACCAACCGGACCATA 59.597 50.000 9.46 0.00 35.59 2.74
2749 6720 0.469144 AAAGCAACCAACCGGACCAT 60.469 50.000 9.46 0.00 35.59 3.55
2750 6721 1.076632 AAAGCAACCAACCGGACCA 60.077 52.632 9.46 0.00 35.59 4.02
2751 6722 1.362355 CAAAGCAACCAACCGGACC 59.638 57.895 9.46 0.00 35.59 4.46
2752 6723 1.310904 TACAAAGCAACCAACCGGAC 58.689 50.000 9.46 0.00 35.59 4.79
2753 6724 2.279935 ATACAAAGCAACCAACCGGA 57.720 45.000 9.46 0.00 35.59 5.14
2754 6725 2.814919 TGTATACAAAGCAACCAACCGG 59.185 45.455 2.20 0.00 38.77 5.28
2755 6726 4.491234 TTGTATACAAAGCAACCAACCG 57.509 40.909 15.92 0.00 32.11 4.44
2784 6755 2.097036 CCATACCGAAAAGGGGTTTCC 58.903 52.381 0.00 0.00 46.96 3.13
2785 6756 2.097036 CCCATACCGAAAAGGGGTTTC 58.903 52.381 0.00 0.00 46.96 2.78
2786 6757 2.225382 CCCATACCGAAAAGGGGTTT 57.775 50.000 0.00 0.00 46.96 3.27
2787 6758 3.991972 CCCATACCGAAAAGGGGTT 57.008 52.632 0.00 0.00 46.96 4.11
2789 6760 0.106868 GGACCCATACCGAAAAGGGG 60.107 60.000 0.00 0.00 45.83 4.79
2790 6761 0.621609 TGGACCCATACCGAAAAGGG 59.378 55.000 0.00 0.00 46.96 3.95
2792 6763 3.067684 ACTTGGACCCATACCGAAAAG 57.932 47.619 0.00 0.00 0.00 2.27
2793 6764 3.512219 AACTTGGACCCATACCGAAAA 57.488 42.857 0.00 0.00 0.00 2.29
2794 6765 3.150767 CAAACTTGGACCCATACCGAAA 58.849 45.455 0.00 0.00 0.00 3.46
2795 6766 2.372504 TCAAACTTGGACCCATACCGAA 59.627 45.455 0.00 0.00 0.00 4.30
2796 6767 1.979308 TCAAACTTGGACCCATACCGA 59.021 47.619 0.00 0.00 0.00 4.69
2797 6768 2.290071 ACTCAAACTTGGACCCATACCG 60.290 50.000 0.00 0.00 0.00 4.02
2798 6769 3.434940 ACTCAAACTTGGACCCATACC 57.565 47.619 0.00 0.00 0.00 2.73
2799 6770 6.657541 TCAATTACTCAAACTTGGACCCATAC 59.342 38.462 0.00 0.00 0.00 2.39
2800 6771 6.785076 TCAATTACTCAAACTTGGACCCATA 58.215 36.000 0.00 0.00 0.00 2.74
2801 6772 5.640147 TCAATTACTCAAACTTGGACCCAT 58.360 37.500 0.00 0.00 0.00 4.00
2802 6773 5.055265 TCAATTACTCAAACTTGGACCCA 57.945 39.130 0.00 0.00 0.00 4.51
2803 6774 5.710099 TCATCAATTACTCAAACTTGGACCC 59.290 40.000 0.00 0.00 0.00 4.46
2804 6775 6.817765 TCATCAATTACTCAAACTTGGACC 57.182 37.500 0.00 0.00 0.00 4.46
2805 6776 7.875971 ACTTCATCAATTACTCAAACTTGGAC 58.124 34.615 0.00 0.00 0.00 4.02
2806 6777 7.719193 TGACTTCATCAATTACTCAAACTTGGA 59.281 33.333 0.00 0.00 33.02 3.53
2807 6778 7.874940 TGACTTCATCAATTACTCAAACTTGG 58.125 34.615 0.00 0.00 33.02 3.61
2808 6779 9.338291 CATGACTTCATCAATTACTCAAACTTG 57.662 33.333 0.00 0.00 41.93 3.16
2809 6780 9.071276 ACATGACTTCATCAATTACTCAAACTT 57.929 29.630 0.00 0.00 41.93 2.66
2810 6781 8.627208 ACATGACTTCATCAATTACTCAAACT 57.373 30.769 0.00 0.00 41.93 2.66
2817 6788 9.429359 CCCTAGATACATGACTTCATCAATTAC 57.571 37.037 0.00 0.00 41.93 1.89
2818 6789 9.159254 ACCCTAGATACATGACTTCATCAATTA 57.841 33.333 0.00 0.00 41.93 1.40
2819 6790 8.038862 ACCCTAGATACATGACTTCATCAATT 57.961 34.615 0.00 0.00 41.93 2.32
2837 6808 3.042059 GGTTCATGACCCTACCCTAGA 57.958 52.381 1.23 0.00 43.06 2.43
2915 6887 2.022195 CCGTCGAATGGAGTTCCTCTA 58.978 52.381 0.00 0.00 36.82 2.43
2928 6900 2.740981 GAGTGTCTTCTAGTCCGTCGAA 59.259 50.000 0.00 0.00 0.00 3.71
2976 6949 5.836358 GGATACAGAGTAGATCTTGAACCCT 59.164 44.000 0.00 0.00 35.47 4.34
3069 7043 6.574859 CGGAGGGTTAAAGTACATTAAGGTCA 60.575 42.308 3.61 0.00 0.00 4.02
3124 7098 3.116120 TGGAGGGGGTGGCTTATATAGAA 60.116 47.826 0.00 0.00 0.00 2.10
3246 7222 5.062934 CACACAAGTGTTTTACGAGTTCAGA 59.937 40.000 2.55 0.00 42.83 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.