Multiple sequence alignment - TraesCS2B01G173200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G173200 chr2B 100.000 2330 0 0 631 2960 146992278 146994607 0.000000e+00 4303.0
1 TraesCS2B01G173200 chr2B 100.000 320 0 0 1 320 146991648 146991967 2.540000e-165 592.0
2 TraesCS2B01G173200 chr2B 75.239 731 142 30 1197 1897 146964251 146964972 7.970000e-81 311.0
3 TraesCS2B01G173200 chr2B 93.684 95 6 0 226 320 215471788 215471694 3.080000e-30 143.0
4 TraesCS2B01G173200 chr2B 92.857 98 5 2 224 320 106164673 106164577 1.110000e-29 141.0
5 TraesCS2B01G173200 chr2B 71.134 679 160 24 1279 1945 147491819 147492473 5.150000e-28 135.0
6 TraesCS2B01G173200 chr2B 88.235 102 10 2 1 100 798707358 798707257 1.440000e-23 121.0
7 TraesCS2B01G173200 chr2B 94.444 54 3 0 631 684 17513153 17513100 1.890000e-12 84.2
8 TraesCS2B01G173200 chr2B 84.810 79 6 6 94 168 776300783 776300707 1.140000e-09 75.0
9 TraesCS2B01G173200 chr2D 93.237 1656 78 22 681 2315 95644534 95646176 0.000000e+00 2407.0
10 TraesCS2B01G173200 chr2D 86.731 520 49 14 2389 2894 95646311 95646824 7.160000e-156 560.0
11 TraesCS2B01G173200 chr2D 74.843 795 167 27 1197 1963 95516171 95516960 2.200000e-86 329.0
12 TraesCS2B01G173200 chr2D 93.750 96 5 1 224 319 459317614 459317520 3.080000e-30 143.0
13 TraesCS2B01G173200 chr2D 88.462 104 10 2 1 102 104868270 104868373 1.110000e-24 124.0
14 TraesCS2B01G173200 chr2D 88.235 102 10 2 1 100 618294576 618294475 1.440000e-23 121.0
15 TraesCS2B01G173200 chr2D 91.358 81 1 3 2307 2385 95646199 95646275 4.030000e-19 106.0
16 TraesCS2B01G173200 chr2D 98.113 53 1 0 2908 2960 95646807 95646859 3.140000e-15 93.5
17 TraesCS2B01G173200 chr2A 94.359 1365 62 8 681 2036 94157420 94158778 0.000000e+00 2080.0
18 TraesCS2B01G173200 chr2A 87.179 234 20 6 2077 2301 94158890 94159122 1.050000e-64 257.0
19 TraesCS2B01G173200 chr2A 89.256 121 12 1 101 221 94157307 94157426 1.840000e-32 150.0
20 TraesCS2B01G173200 chr7B 77.941 884 170 22 1026 1895 535614415 535615287 2.020000e-146 529.0
21 TraesCS2B01G173200 chr7B 77.881 859 170 19 1047 1895 535506180 535507028 1.570000e-142 516.0
22 TraesCS2B01G173200 chr7B 96.000 50 2 0 632 681 732448831 732448782 6.800000e-12 82.4
23 TraesCS2B01G173200 chr7A 78.165 861 164 22 1047 1895 574753968 574754816 7.270000e-146 527.0
24 TraesCS2B01G173200 chr7A 83.333 96 16 0 1130 1225 36630036 36629941 4.060000e-14 89.8
25 TraesCS2B01G173200 chrUn 75.754 763 164 19 1197 1947 49113124 49113877 6.030000e-97 364.0
26 TraesCS2B01G173200 chrUn 75.613 775 168 19 1197 1959 384624698 384623933 6.030000e-97 364.0
27 TraesCS2B01G173200 chrUn 83.333 96 16 0 1130 1225 90726765 90726670 4.060000e-14 89.8
28 TraesCS2B01G173200 chrUn 83.333 96 16 0 1130 1225 90939310 90939215 4.060000e-14 89.8
29 TraesCS2B01G173200 chrUn 83.333 96 16 0 1130 1225 401026635 401026540 4.060000e-14 89.8
30 TraesCS2B01G173200 chr4A 95.918 98 3 1 223 320 701283880 701283784 1.100000e-34 158.0
31 TraesCS2B01G173200 chr4B 95.833 96 4 0 225 320 22236505 22236410 3.950000e-34 156.0
32 TraesCS2B01G173200 chr4B 91.398 93 8 0 16 108 416644023 416644115 8.610000e-26 128.0
33 TraesCS2B01G173200 chr4B 97.917 48 1 0 631 678 63010093 63010046 1.890000e-12 84.2
34 TraesCS2B01G173200 chr4B 95.918 49 2 0 631 679 634086394 634086346 2.450000e-11 80.5
35 TraesCS2B01G173200 chr1D 93.814 97 6 0 224 320 431709037 431709133 2.380000e-31 147.0
36 TraesCS2B01G173200 chr1D 87.619 105 11 2 1 103 83163135 83163239 1.440000e-23 121.0
37 TraesCS2B01G173200 chr1B 92.929 99 7 0 222 320 567682598 567682500 8.550000e-31 145.0
38 TraesCS2B01G173200 chr1B 93.814 97 5 1 224 320 665073817 665073722 8.550000e-31 145.0
39 TraesCS2B01G173200 chr1B 95.918 49 2 0 631 679 639238850 639238898 2.450000e-11 80.5
40 TraesCS2B01G173200 chr6B 93.814 97 3 3 224 320 653759419 653759512 3.080000e-30 143.0
41 TraesCS2B01G173200 chr6B 97.917 48 1 0 632 679 653766797 653766844 1.890000e-12 84.2
42 TraesCS2B01G173200 chr5B 89.000 100 9 2 1 98 678529336 678529435 4.010000e-24 122.0
43 TraesCS2B01G173200 chr5B 95.918 49 2 0 631 679 9272536 9272584 2.450000e-11 80.5
44 TraesCS2B01G173200 chr7D 88.235 102 10 2 1 100 49806793 49806894 1.440000e-23 121.0
45 TraesCS2B01G173200 chr7D 88.119 101 10 2 1 99 165122785 165122885 5.180000e-23 119.0
46 TraesCS2B01G173200 chr5A 88.235 102 10 2 1 100 590529673 590529774 1.440000e-23 121.0
47 TraesCS2B01G173200 chr6D 97.959 49 1 0 631 679 430404134 430404182 5.260000e-13 86.1
48 TraesCS2B01G173200 chr3D 95.918 49 2 0 631 679 586940312 586940360 2.450000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G173200 chr2B 146991648 146994607 2959 False 2447.500 4303 100.000000 1 2960 2 chr2B.!!$F3 2959
1 TraesCS2B01G173200 chr2B 146964251 146964972 721 False 311.000 311 75.239000 1197 1897 1 chr2B.!!$F1 700
2 TraesCS2B01G173200 chr2D 95644534 95646859 2325 False 791.625 2407 92.359750 681 2960 4 chr2D.!!$F3 2279
3 TraesCS2B01G173200 chr2D 95516171 95516960 789 False 329.000 329 74.843000 1197 1963 1 chr2D.!!$F1 766
4 TraesCS2B01G173200 chr2A 94157307 94159122 1815 False 829.000 2080 90.264667 101 2301 3 chr2A.!!$F1 2200
5 TraesCS2B01G173200 chr7B 535614415 535615287 872 False 529.000 529 77.941000 1026 1895 1 chr7B.!!$F2 869
6 TraesCS2B01G173200 chr7B 535506180 535507028 848 False 516.000 516 77.881000 1047 1895 1 chr7B.!!$F1 848
7 TraesCS2B01G173200 chr7A 574753968 574754816 848 False 527.000 527 78.165000 1047 1895 1 chr7A.!!$F1 848
8 TraesCS2B01G173200 chrUn 49113124 49113877 753 False 364.000 364 75.754000 1197 1947 1 chrUn.!!$F1 750
9 TraesCS2B01G173200 chrUn 384623933 384624698 765 True 364.000 364 75.613000 1197 1959 1 chrUn.!!$R3 762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.250901 AAATGCGAGCACCAGGACTT 60.251 50.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 2020 0.600057 TTTGCGTATGTGCATTGCCA 59.4 45.0 6.12 4.27 45.78 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.819105 TCCGAAAGAGAGCCAGAATAAA 57.181 40.909 0.00 0.00 0.00 1.40
22 23 5.359194 TCCGAAAGAGAGCCAGAATAAAT 57.641 39.130 0.00 0.00 0.00 1.40
23 24 5.118990 TCCGAAAGAGAGCCAGAATAAATG 58.881 41.667 0.00 0.00 0.00 2.32
24 25 4.260948 CCGAAAGAGAGCCAGAATAAATGC 60.261 45.833 0.00 0.00 0.00 3.56
25 26 4.551603 CGAAAGAGAGCCAGAATAAATGCG 60.552 45.833 0.00 0.00 0.00 4.73
26 27 3.827008 AGAGAGCCAGAATAAATGCGA 57.173 42.857 0.00 0.00 0.00 5.10
27 28 3.726607 AGAGAGCCAGAATAAATGCGAG 58.273 45.455 0.00 0.00 0.00 5.03
28 29 2.216898 AGAGCCAGAATAAATGCGAGC 58.783 47.619 0.00 0.00 0.00 5.03
29 30 1.942657 GAGCCAGAATAAATGCGAGCA 59.057 47.619 0.00 0.00 0.00 4.26
30 31 1.672881 AGCCAGAATAAATGCGAGCAC 59.327 47.619 0.00 0.00 0.00 4.40
31 32 1.268743 GCCAGAATAAATGCGAGCACC 60.269 52.381 0.00 0.00 0.00 5.01
32 33 2.016318 CCAGAATAAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
33 34 2.032550 CCAGAATAAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
34 35 2.032550 CAGAATAAATGCGAGCACCAGG 59.967 50.000 0.00 0.00 0.00 4.45
35 36 2.092968 AGAATAAATGCGAGCACCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
36 37 1.668419 ATAAATGCGAGCACCAGGAC 58.332 50.000 0.00 0.00 0.00 3.85
37 38 0.613260 TAAATGCGAGCACCAGGACT 59.387 50.000 0.00 0.00 0.00 3.85
38 39 0.250901 AAATGCGAGCACCAGGACTT 60.251 50.000 0.00 0.00 0.00 3.01
39 40 0.957395 AATGCGAGCACCAGGACTTG 60.957 55.000 0.00 0.00 0.00 3.16
40 41 1.830587 ATGCGAGCACCAGGACTTGA 61.831 55.000 0.00 0.00 0.00 3.02
41 42 1.301716 GCGAGCACCAGGACTTGAA 60.302 57.895 0.00 0.00 0.00 2.69
42 43 1.569479 GCGAGCACCAGGACTTGAAC 61.569 60.000 0.00 0.00 0.00 3.18
43 44 0.951040 CGAGCACCAGGACTTGAACC 60.951 60.000 0.00 0.00 0.00 3.62
44 45 0.606673 GAGCACCAGGACTTGAACCC 60.607 60.000 0.00 0.00 0.00 4.11
45 46 1.062488 AGCACCAGGACTTGAACCCT 61.062 55.000 0.00 0.00 0.00 4.34
49 50 3.329300 CAGGACTTGAACCCTGGTG 57.671 57.895 0.00 0.00 44.68 4.17
50 51 0.250901 CAGGACTTGAACCCTGGTGG 60.251 60.000 0.00 0.00 44.68 4.61
51 52 1.603739 GGACTTGAACCCTGGTGGC 60.604 63.158 0.00 0.00 37.83 5.01
52 53 1.603739 GACTTGAACCCTGGTGGCC 60.604 63.158 0.00 0.00 37.83 5.36
53 54 2.069165 GACTTGAACCCTGGTGGCCT 62.069 60.000 3.32 0.00 37.83 5.19
54 55 1.604593 CTTGAACCCTGGTGGCCTG 60.605 63.158 3.32 0.00 37.83 4.85
55 56 3.145473 TTGAACCCTGGTGGCCTGG 62.145 63.158 3.32 0.59 41.51 4.45
60 61 2.368192 CCTGGTGGCCTGGGGATA 60.368 66.667 3.32 0.00 38.71 2.59
61 62 2.757124 CCTGGTGGCCTGGGGATAC 61.757 68.421 3.32 0.00 38.71 2.24
77 78 4.922471 GGATACCACAGTCTCTCTAACC 57.078 50.000 0.00 0.00 0.00 2.85
78 79 3.315749 GGATACCACAGTCTCTCTAACCG 59.684 52.174 0.00 0.00 0.00 4.44
79 80 2.289592 ACCACAGTCTCTCTAACCGT 57.710 50.000 0.00 0.00 0.00 4.83
80 81 2.161030 ACCACAGTCTCTCTAACCGTC 58.839 52.381 0.00 0.00 0.00 4.79
81 82 2.224818 ACCACAGTCTCTCTAACCGTCT 60.225 50.000 0.00 0.00 0.00 4.18
82 83 3.008813 ACCACAGTCTCTCTAACCGTCTA 59.991 47.826 0.00 0.00 0.00 2.59
83 84 4.008330 CCACAGTCTCTCTAACCGTCTAA 58.992 47.826 0.00 0.00 0.00 2.10
84 85 4.142643 CCACAGTCTCTCTAACCGTCTAAC 60.143 50.000 0.00 0.00 0.00 2.34
85 86 4.009002 ACAGTCTCTCTAACCGTCTAACC 58.991 47.826 0.00 0.00 0.00 2.85
86 87 4.008330 CAGTCTCTCTAACCGTCTAACCA 58.992 47.826 0.00 0.00 0.00 3.67
87 88 4.641094 CAGTCTCTCTAACCGTCTAACCAT 59.359 45.833 0.00 0.00 0.00 3.55
88 89 5.821470 CAGTCTCTCTAACCGTCTAACCATA 59.179 44.000 0.00 0.00 0.00 2.74
89 90 6.017770 CAGTCTCTCTAACCGTCTAACCATAG 60.018 46.154 0.00 0.00 0.00 2.23
90 91 5.239087 GTCTCTCTAACCGTCTAACCATAGG 59.761 48.000 0.00 0.00 0.00 2.57
91 92 5.104193 TCTCTCTAACCGTCTAACCATAGGT 60.104 44.000 0.00 0.00 37.65 3.08
93 94 6.662755 TCTCTAACCGTCTAACCATAGGTTA 58.337 40.000 8.25 8.25 44.94 2.85
94 95 7.118723 TCTCTAACCGTCTAACCATAGGTTAA 58.881 38.462 9.67 0.00 45.92 2.01
95 96 7.781693 TCTCTAACCGTCTAACCATAGGTTAAT 59.218 37.037 9.67 0.00 45.92 1.40
96 97 8.310122 TCTAACCGTCTAACCATAGGTTAATT 57.690 34.615 9.67 3.40 45.92 1.40
97 98 8.416329 TCTAACCGTCTAACCATAGGTTAATTC 58.584 37.037 9.67 3.41 45.92 2.17
98 99 5.594926 ACCGTCTAACCATAGGTTAATTCG 58.405 41.667 9.67 12.46 45.92 3.34
99 100 4.446719 CCGTCTAACCATAGGTTAATTCGC 59.553 45.833 9.67 0.00 45.92 4.70
104 105 1.071071 CCATAGGTTAATTCGCGGGGA 59.929 52.381 6.13 0.00 0.00 4.81
107 108 1.222661 GGTTAATTCGCGGGGAGGT 59.777 57.895 6.13 0.00 0.00 3.85
108 109 0.393402 GGTTAATTCGCGGGGAGGTT 60.393 55.000 6.13 0.00 0.00 3.50
120 121 2.355412 CGGGGAGGTTTAGTTGTTAGGG 60.355 54.545 0.00 0.00 0.00 3.53
125 126 5.457197 GGGAGGTTTAGTTGTTAGGGAGTTT 60.457 44.000 0.00 0.00 0.00 2.66
127 128 6.652481 GGAGGTTTAGTTGTTAGGGAGTTTAC 59.348 42.308 0.00 0.00 0.00 2.01
133 134 8.587952 TTAGTTGTTAGGGAGTTTACGTAAAC 57.412 34.615 33.73 33.73 44.38 2.01
149 150 4.479619 CGTAAACTGGTACGTAGCTCTTT 58.520 43.478 23.89 20.45 41.51 2.52
178 179 9.046296 AGATGTAGGATTTTCGTAGCAATTAAG 57.954 33.333 0.00 0.00 0.00 1.85
197 198 0.756815 GAAGGTTGGGGGATCATGCC 60.757 60.000 0.00 0.00 0.00 4.40
199 200 3.219198 GTTGGGGGATCATGCCGC 61.219 66.667 5.14 5.14 41.20 6.53
219 220 2.549754 GCCAGATAACATCATGGTTCGG 59.450 50.000 0.00 0.00 33.15 4.30
220 221 3.808728 CCAGATAACATCATGGTTCGGT 58.191 45.455 0.00 0.00 32.29 4.69
221 222 4.742440 GCCAGATAACATCATGGTTCGGTA 60.742 45.833 0.00 0.00 33.15 4.02
222 223 4.991056 CCAGATAACATCATGGTTCGGTAG 59.009 45.833 0.00 0.00 32.29 3.18
223 224 4.991056 CAGATAACATCATGGTTCGGTAGG 59.009 45.833 0.00 0.00 32.29 3.18
224 225 4.899457 AGATAACATCATGGTTCGGTAGGA 59.101 41.667 0.00 0.00 32.29 2.94
225 226 3.543680 AACATCATGGTTCGGTAGGAG 57.456 47.619 0.00 0.00 0.00 3.69
226 227 2.467880 ACATCATGGTTCGGTAGGAGT 58.532 47.619 0.00 0.00 0.00 3.85
227 228 3.638860 ACATCATGGTTCGGTAGGAGTA 58.361 45.455 0.00 0.00 0.00 2.59
228 229 4.028131 ACATCATGGTTCGGTAGGAGTAA 58.972 43.478 0.00 0.00 0.00 2.24
229 230 4.654262 ACATCATGGTTCGGTAGGAGTAAT 59.346 41.667 0.00 0.00 0.00 1.89
230 231 4.665833 TCATGGTTCGGTAGGAGTAATG 57.334 45.455 0.00 0.00 0.00 1.90
231 232 2.973694 TGGTTCGGTAGGAGTAATGC 57.026 50.000 0.00 0.00 0.00 3.56
232 233 2.463752 TGGTTCGGTAGGAGTAATGCT 58.536 47.619 0.00 0.00 0.00 3.79
233 234 3.634504 TGGTTCGGTAGGAGTAATGCTA 58.365 45.455 0.00 0.00 0.00 3.49
234 235 3.382546 TGGTTCGGTAGGAGTAATGCTAC 59.617 47.826 12.81 12.81 0.00 3.58
235 236 3.382546 GGTTCGGTAGGAGTAATGCTACA 59.617 47.826 21.00 1.45 0.00 2.74
236 237 4.357996 GTTCGGTAGGAGTAATGCTACAC 58.642 47.826 21.00 9.08 0.00 2.90
237 238 2.615447 TCGGTAGGAGTAATGCTACACG 59.385 50.000 21.00 19.85 0.00 4.49
238 239 2.357009 CGGTAGGAGTAATGCTACACGT 59.643 50.000 21.00 0.00 0.00 4.49
239 240 3.561310 CGGTAGGAGTAATGCTACACGTA 59.439 47.826 21.00 0.00 0.00 3.57
240 241 4.553547 CGGTAGGAGTAATGCTACACGTAC 60.554 50.000 21.00 4.93 38.33 3.67
241 242 4.336433 GGTAGGAGTAATGCTACACGTACA 59.664 45.833 21.00 0.00 39.60 2.90
242 243 5.163622 GGTAGGAGTAATGCTACACGTACAA 60.164 44.000 21.00 0.00 39.60 2.41
243 244 5.395682 AGGAGTAATGCTACACGTACAAA 57.604 39.130 0.00 0.00 0.00 2.83
244 245 5.786311 AGGAGTAATGCTACACGTACAAAA 58.214 37.500 0.00 0.00 0.00 2.44
245 246 5.867716 AGGAGTAATGCTACACGTACAAAAG 59.132 40.000 0.00 0.00 0.00 2.27
246 247 5.063060 GGAGTAATGCTACACGTACAAAAGG 59.937 44.000 0.00 0.00 0.00 3.11
247 248 5.786311 AGTAATGCTACACGTACAAAAGGA 58.214 37.500 0.00 0.00 0.00 3.36
248 249 6.403878 AGTAATGCTACACGTACAAAAGGAT 58.596 36.000 0.00 0.00 0.00 3.24
249 250 7.549839 AGTAATGCTACACGTACAAAAGGATA 58.450 34.615 0.00 0.00 0.00 2.59
250 251 6.657836 AATGCTACACGTACAAAAGGATAC 57.342 37.500 0.00 0.00 0.00 2.24
251 252 5.136816 TGCTACACGTACAAAAGGATACA 57.863 39.130 0.00 0.00 41.41 2.29
252 253 5.726397 TGCTACACGTACAAAAGGATACAT 58.274 37.500 0.00 0.00 41.41 2.29
253 254 5.579119 TGCTACACGTACAAAAGGATACATG 59.421 40.000 0.00 0.00 41.41 3.21
254 255 4.939509 ACACGTACAAAAGGATACATGC 57.060 40.909 0.00 0.00 41.41 4.06
255 256 4.575885 ACACGTACAAAAGGATACATGCT 58.424 39.130 0.00 0.00 41.41 3.79
256 257 5.001232 ACACGTACAAAAGGATACATGCTT 58.999 37.500 0.00 0.00 40.34 3.91
268 269 8.823220 AAGGATACATGCTTTTACATAAAGGT 57.177 30.769 0.00 0.00 34.65 3.50
269 270 8.225603 AGGATACATGCTTTTACATAAAGGTG 57.774 34.615 0.00 0.00 41.41 4.00
270 271 8.052748 AGGATACATGCTTTTACATAAAGGTGA 58.947 33.333 0.00 0.00 41.41 4.02
271 272 8.345565 GGATACATGCTTTTACATAAAGGTGAG 58.654 37.037 0.00 0.00 0.00 3.51
272 273 8.807948 ATACATGCTTTTACATAAAGGTGAGT 57.192 30.769 0.00 0.00 0.00 3.41
273 274 7.524717 ACATGCTTTTACATAAAGGTGAGTT 57.475 32.000 0.00 0.00 0.00 3.01
274 275 7.951591 ACATGCTTTTACATAAAGGTGAGTTT 58.048 30.769 0.00 0.00 0.00 2.66
275 276 8.421002 ACATGCTTTTACATAAAGGTGAGTTTT 58.579 29.630 0.00 0.00 0.00 2.43
276 277 8.702438 CATGCTTTTACATAAAGGTGAGTTTTG 58.298 33.333 0.00 0.00 0.00 2.44
277 278 8.001881 TGCTTTTACATAAAGGTGAGTTTTGA 57.998 30.769 0.00 0.00 0.00 2.69
278 279 8.637986 TGCTTTTACATAAAGGTGAGTTTTGAT 58.362 29.630 0.00 0.00 0.00 2.57
279 280 9.476202 GCTTTTACATAAAGGTGAGTTTTGATT 57.524 29.630 0.00 0.00 0.00 2.57
281 282 9.757227 TTTTACATAAAGGTGAGTTTTGATTGG 57.243 29.630 0.00 0.00 0.00 3.16
282 283 8.698973 TTACATAAAGGTGAGTTTTGATTGGA 57.301 30.769 0.00 0.00 0.00 3.53
283 284 7.219484 ACATAAAGGTGAGTTTTGATTGGAG 57.781 36.000 0.00 0.00 0.00 3.86
284 285 7.004086 ACATAAAGGTGAGTTTTGATTGGAGA 58.996 34.615 0.00 0.00 0.00 3.71
285 286 7.671398 ACATAAAGGTGAGTTTTGATTGGAGAT 59.329 33.333 0.00 0.00 0.00 2.75
286 287 6.983906 AAAGGTGAGTTTTGATTGGAGATT 57.016 33.333 0.00 0.00 0.00 2.40
287 288 9.753674 ATAAAGGTGAGTTTTGATTGGAGATTA 57.246 29.630 0.00 0.00 0.00 1.75
288 289 8.477419 AAAGGTGAGTTTTGATTGGAGATTAA 57.523 30.769 0.00 0.00 0.00 1.40
289 290 7.693969 AGGTGAGTTTTGATTGGAGATTAAG 57.306 36.000 0.00 0.00 0.00 1.85
290 291 6.660949 AGGTGAGTTTTGATTGGAGATTAAGG 59.339 38.462 0.00 0.00 0.00 2.69
291 292 6.127619 GGTGAGTTTTGATTGGAGATTAAGGG 60.128 42.308 0.00 0.00 0.00 3.95
292 293 5.951747 TGAGTTTTGATTGGAGATTAAGGGG 59.048 40.000 0.00 0.00 0.00 4.79
293 294 5.272402 AGTTTTGATTGGAGATTAAGGGGG 58.728 41.667 0.00 0.00 0.00 5.40
294 295 5.016245 AGTTTTGATTGGAGATTAAGGGGGA 59.984 40.000 0.00 0.00 0.00 4.81
295 296 4.796110 TTGATTGGAGATTAAGGGGGAG 57.204 45.455 0.00 0.00 0.00 4.30
296 297 4.021007 TGATTGGAGATTAAGGGGGAGA 57.979 45.455 0.00 0.00 0.00 3.71
297 298 4.379875 TGATTGGAGATTAAGGGGGAGAA 58.620 43.478 0.00 0.00 0.00 2.87
298 299 4.413520 TGATTGGAGATTAAGGGGGAGAAG 59.586 45.833 0.00 0.00 0.00 2.85
299 300 2.776665 TGGAGATTAAGGGGGAGAAGG 58.223 52.381 0.00 0.00 0.00 3.46
300 301 2.058705 GGAGATTAAGGGGGAGAAGGG 58.941 57.143 0.00 0.00 0.00 3.95
301 302 2.058705 GAGATTAAGGGGGAGAAGGGG 58.941 57.143 0.00 0.00 0.00 4.79
302 303 0.478942 GATTAAGGGGGAGAAGGGGC 59.521 60.000 0.00 0.00 0.00 5.80
303 304 0.254107 ATTAAGGGGGAGAAGGGGCA 60.254 55.000 0.00 0.00 0.00 5.36
304 305 1.212250 TTAAGGGGGAGAAGGGGCAC 61.212 60.000 0.00 0.00 0.00 5.01
305 306 2.424989 TAAGGGGGAGAAGGGGCACA 62.425 60.000 0.00 0.00 0.00 4.57
306 307 4.048470 GGGGGAGAAGGGGCACAC 62.048 72.222 0.00 0.00 0.00 3.82
307 308 2.936032 GGGGAGAAGGGGCACACT 60.936 66.667 0.00 0.00 0.00 3.55
308 309 2.671682 GGGAGAAGGGGCACACTC 59.328 66.667 5.59 5.59 0.00 3.51
309 310 1.920835 GGGAGAAGGGGCACACTCT 60.921 63.158 12.28 2.81 0.00 3.24
310 311 1.599576 GGAGAAGGGGCACACTCTC 59.400 63.158 9.70 9.70 0.00 3.20
311 312 1.194781 GGAGAAGGGGCACACTCTCA 61.195 60.000 17.49 0.00 0.00 3.27
312 313 0.908198 GAGAAGGGGCACACTCTCAT 59.092 55.000 12.53 0.00 0.00 2.90
313 314 0.617413 AGAAGGGGCACACTCTCATG 59.383 55.000 0.00 0.00 0.00 3.07
314 315 0.615331 GAAGGGGCACACTCTCATGA 59.385 55.000 0.00 0.00 0.00 3.07
315 316 1.003580 GAAGGGGCACACTCTCATGAA 59.996 52.381 0.00 0.00 0.00 2.57
316 317 1.067295 AGGGGCACACTCTCATGAAA 58.933 50.000 0.00 0.00 0.00 2.69
317 318 1.425066 AGGGGCACACTCTCATGAAAA 59.575 47.619 0.00 0.00 0.00 2.29
318 319 2.042162 AGGGGCACACTCTCATGAAAAT 59.958 45.455 0.00 0.00 0.00 1.82
319 320 2.424956 GGGGCACACTCTCATGAAAATC 59.575 50.000 0.00 0.00 0.00 2.17
658 659 3.799137 CGTGTAAACGCATGTAAACCT 57.201 42.857 0.00 0.00 0.00 3.50
659 660 4.136517 CGTGTAAACGCATGTAAACCTT 57.863 40.909 0.00 0.00 0.00 3.50
660 661 4.529446 CGTGTAAACGCATGTAAACCTTT 58.471 39.130 0.00 0.00 0.00 3.11
661 662 4.377445 CGTGTAAACGCATGTAAACCTTTG 59.623 41.667 0.00 0.00 0.00 2.77
662 663 5.275494 GTGTAAACGCATGTAAACCTTTGT 58.725 37.500 0.00 0.00 0.00 2.83
663 664 6.428799 GTGTAAACGCATGTAAACCTTTGTA 58.571 36.000 0.00 0.00 0.00 2.41
664 665 7.079475 GTGTAAACGCATGTAAACCTTTGTAT 58.921 34.615 0.00 0.00 0.00 2.29
665 666 7.060174 GTGTAAACGCATGTAAACCTTTGTATG 59.940 37.037 0.00 0.00 0.00 2.39
666 667 5.699097 AACGCATGTAAACCTTTGTATGT 57.301 34.783 0.00 0.00 0.00 2.29
667 668 5.699097 ACGCATGTAAACCTTTGTATGTT 57.301 34.783 0.00 0.00 0.00 2.71
668 669 6.079424 ACGCATGTAAACCTTTGTATGTTT 57.921 33.333 0.00 0.00 38.22 2.83
669 670 7.204496 ACGCATGTAAACCTTTGTATGTTTA 57.796 32.000 0.00 0.00 36.23 2.01
670 671 7.302524 ACGCATGTAAACCTTTGTATGTTTAG 58.697 34.615 0.00 0.00 37.55 1.85
671 672 6.250527 CGCATGTAAACCTTTGTATGTTTAGC 59.749 38.462 0.00 0.00 37.55 3.09
672 673 7.087639 GCATGTAAACCTTTGTATGTTTAGCA 58.912 34.615 0.00 0.00 37.55 3.49
673 674 7.759433 GCATGTAAACCTTTGTATGTTTAGCAT 59.241 33.333 0.00 0.00 37.55 3.79
674 675 9.638239 CATGTAAACCTTTGTATGTTTAGCATT 57.362 29.630 0.00 0.00 37.55 3.56
680 681 9.638239 AACCTTTGTATGTTTAGCATTATTGTG 57.362 29.630 0.00 0.00 38.94 3.33
681 682 8.802267 ACCTTTGTATGTTTAGCATTATTGTGT 58.198 29.630 0.00 0.00 38.94 3.72
682 683 9.638239 CCTTTGTATGTTTAGCATTATTGTGTT 57.362 29.630 0.00 0.00 38.94 3.32
721 723 4.457257 GCCTTCTTTAGCAAGTTCATGAGT 59.543 41.667 0.00 0.00 0.00 3.41
751 753 0.457443 GCTTTCCTAGGGCAATGCAC 59.543 55.000 9.46 2.32 0.00 4.57
772 774 6.019961 TGCACGAAAGAAAATTAAACAAGCAG 60.020 34.615 0.00 0.00 0.00 4.24
779 781 9.822185 AAAGAAAATTAAACAAGCAGAATCACT 57.178 25.926 0.00 0.00 0.00 3.41
889 892 9.400638 GTTCTACGTATGGAATATCTCTTTCTG 57.599 37.037 0.00 0.00 0.00 3.02
890 893 8.693120 TCTACGTATGGAATATCTCTTTCTGT 57.307 34.615 0.00 0.00 0.00 3.41
913 918 9.408648 CTGTTCACTTTTCCCACCTATAAATAT 57.591 33.333 0.00 0.00 0.00 1.28
973 978 1.974236 GATCCATCTCCCCCTACACTG 59.026 57.143 0.00 0.00 0.00 3.66
1179 1197 0.666913 GCATCATCCGCATGCTCTTT 59.333 50.000 17.13 0.00 42.95 2.52
1404 1422 2.037367 TACCTCCTCAGCCACGCT 59.963 61.111 0.00 0.00 40.77 5.07
1566 1584 2.362503 ATGGTCGTGCTCTCCGGA 60.363 61.111 2.93 2.93 0.00 5.14
1599 1617 2.997315 CGGTCCCACTGCTCCTCA 60.997 66.667 0.00 0.00 0.00 3.86
1767 1819 1.185618 TCTACAGGAACGTGCTGGCT 61.186 55.000 10.26 0.00 40.38 4.75
1899 1951 1.683943 CGATGGTGAAGATGGCCAAT 58.316 50.000 10.96 0.00 35.74 3.16
1965 2020 0.390472 GCTTCGTCAACTAGCTGGCT 60.390 55.000 0.00 0.00 32.26 4.75
1966 2021 1.354040 CTTCGTCAACTAGCTGGCTG 58.646 55.000 5.25 0.00 0.00 4.85
1967 2022 0.037326 TTCGTCAACTAGCTGGCTGG 60.037 55.000 5.25 4.83 0.00 4.85
1968 2023 2.103042 CGTCAACTAGCTGGCTGGC 61.103 63.158 5.25 0.00 0.00 4.85
1991 2046 2.147150 TGCACATACGCAAAAGCTACA 58.853 42.857 0.00 0.00 39.45 2.74
2004 2102 6.251376 CGCAAAAGCTACAACTATTTTGATCC 59.749 38.462 12.10 0.00 42.48 3.36
2011 2109 9.474313 AGCTACAACTATTTTGATCCCATTTTA 57.526 29.630 0.00 0.00 0.00 1.52
2028 2126 5.466393 CCATTTTATCCCATTTTCGATTGGC 59.534 40.000 4.47 0.00 0.00 4.52
2040 2138 7.009540 CCATTTTCGATTGGCTGTAAAGAATTC 59.990 37.037 0.00 0.00 0.00 2.17
2041 2139 5.560966 TTCGATTGGCTGTAAAGAATTCC 57.439 39.130 0.65 0.00 0.00 3.01
2052 2150 4.949856 TGTAAAGAATTCCTTCCCATCTGC 59.050 41.667 0.65 0.00 33.02 4.26
2062 2160 1.304052 CCCATCTGCGGGGTTTTCA 60.304 57.895 0.00 0.00 43.21 2.69
2075 2173 1.339929 GGTTTTCATTGCTCGGGTTGT 59.660 47.619 0.00 0.00 0.00 3.32
2158 2284 7.043961 TCTCAGAAAATGTCGCAGTATATCT 57.956 36.000 0.00 0.00 0.00 1.98
2308 2442 6.519382 AGAGGAAAGCCAAGAAATTTCTTTG 58.481 36.000 27.08 24.25 44.70 2.77
2345 2512 0.889186 AACAACATCCAGGCACCGAC 60.889 55.000 0.00 0.00 0.00 4.79
2346 2513 2.040544 CAACATCCAGGCACCGACC 61.041 63.158 0.00 0.00 0.00 4.79
2347 2514 3.268103 AACATCCAGGCACCGACCC 62.268 63.158 0.00 0.00 0.00 4.46
2348 2515 3.716195 CATCCAGGCACCGACCCA 61.716 66.667 0.00 0.00 0.00 4.51
2380 2547 2.162408 GCCAAAAGAGACCTTCGGATTG 59.838 50.000 0.00 0.00 30.42 2.67
2385 2552 0.173708 GAGACCTTCGGATTGACGCT 59.826 55.000 0.00 0.00 0.00 5.07
2386 2553 1.404391 GAGACCTTCGGATTGACGCTA 59.596 52.381 0.00 0.00 0.00 4.26
2387 2554 2.032620 AGACCTTCGGATTGACGCTAT 58.967 47.619 0.00 0.00 0.00 2.97
2398 2597 3.427516 TTGACGCTATTCAAAACGACG 57.572 42.857 0.00 0.00 32.42 5.12
2406 2605 0.651551 TTCAAAACGACGTGGGTTCG 59.348 50.000 0.00 0.00 0.00 3.95
2407 2606 1.368374 CAAAACGACGTGGGTTCGC 60.368 57.895 0.00 0.00 0.00 4.70
2421 2620 3.529341 TTCGCTGAAGCTCGGCCAA 62.529 57.895 2.24 3.10 45.71 4.52
2656 2856 9.086336 TGTTCAGAATTTCAAATTTCTGTTCAC 57.914 29.630 19.18 15.84 45.77 3.18
2657 2857 9.305925 GTTCAGAATTTCAAATTTCTGTTCACT 57.694 29.630 19.18 2.12 45.77 3.41
2671 2892 8.600449 TTTCTGTTCACTTTTTCAAACATTGT 57.400 26.923 0.00 0.00 31.73 2.71
2675 2896 7.791949 TGTTCACTTTTTCAAACATTGTTCAC 58.208 30.769 1.83 0.00 0.00 3.18
2744 2965 8.744652 TCAAACATTATTTCCGGTATTTGTGAT 58.255 29.630 0.00 0.00 0.00 3.06
2745 2966 9.364989 CAAACATTATTTCCGGTATTTGTGATT 57.635 29.630 0.00 0.00 0.00 2.57
2746 2967 9.936759 AAACATTATTTCCGGTATTTGTGATTT 57.063 25.926 0.00 0.00 0.00 2.17
2747 2968 9.936759 AACATTATTTCCGGTATTTGTGATTTT 57.063 25.926 0.00 0.00 0.00 1.82
2748 2969 9.936759 ACATTATTTCCGGTATTTGTGATTTTT 57.063 25.926 0.00 0.00 0.00 1.94
2826 3047 5.105997 GCATCTGCAATGGTTCTTAAAGTCT 60.106 40.000 9.81 0.00 41.59 3.24
2834 3055 2.224793 GGTTCTTAAAGTCTGGGGCTGT 60.225 50.000 0.00 0.00 0.00 4.40
2850 3071 2.877168 GGCTGTGGATCAAGCATTAGAG 59.123 50.000 14.08 0.00 0.00 2.43
2858 3079 4.691685 GGATCAAGCATTAGAGCTCATCAG 59.308 45.833 17.77 4.17 45.89 2.90
2876 3097 3.992260 CAGGTCTACTGGTAAGGATCG 57.008 52.381 0.00 0.00 43.70 3.69
2877 3098 3.288964 CAGGTCTACTGGTAAGGATCGT 58.711 50.000 0.00 0.00 43.70 3.73
2878 3099 3.066900 CAGGTCTACTGGTAAGGATCGTG 59.933 52.174 0.00 0.00 43.70 4.35
2879 3100 3.022406 GGTCTACTGGTAAGGATCGTGT 58.978 50.000 0.00 0.00 0.00 4.49
2880 3101 4.080129 AGGTCTACTGGTAAGGATCGTGTA 60.080 45.833 0.00 0.00 0.00 2.90
2881 3102 4.641989 GGTCTACTGGTAAGGATCGTGTAA 59.358 45.833 0.00 0.00 0.00 2.41
2882 3103 5.301298 GGTCTACTGGTAAGGATCGTGTAAT 59.699 44.000 0.00 0.00 0.00 1.89
2883 3104 6.488006 GGTCTACTGGTAAGGATCGTGTAATA 59.512 42.308 0.00 0.00 0.00 0.98
2884 3105 7.013655 GGTCTACTGGTAAGGATCGTGTAATAA 59.986 40.741 0.00 0.00 0.00 1.40
2885 3106 7.859875 GTCTACTGGTAAGGATCGTGTAATAAC 59.140 40.741 0.00 0.00 0.00 1.89
2886 3107 6.786967 ACTGGTAAGGATCGTGTAATAACT 57.213 37.500 0.00 0.00 0.00 2.24
2887 3108 7.886629 ACTGGTAAGGATCGTGTAATAACTA 57.113 36.000 0.00 0.00 0.00 2.24
2888 3109 7.938715 ACTGGTAAGGATCGTGTAATAACTAG 58.061 38.462 0.00 0.00 0.00 2.57
2889 3110 6.742109 TGGTAAGGATCGTGTAATAACTAGC 58.258 40.000 0.00 0.00 0.00 3.42
2890 3111 5.855395 GGTAAGGATCGTGTAATAACTAGCG 59.145 44.000 0.00 0.00 0.00 4.26
2891 3112 3.898529 AGGATCGTGTAATAACTAGCGC 58.101 45.455 0.00 0.00 0.00 5.92
2892 3113 2.655474 GGATCGTGTAATAACTAGCGCG 59.345 50.000 0.00 0.00 36.36 6.86
2893 3114 3.548587 GATCGTGTAATAACTAGCGCGA 58.451 45.455 12.10 0.00 45.57 5.87
2894 3115 3.403613 TCGTGTAATAACTAGCGCGAA 57.596 42.857 12.10 0.00 40.20 4.70
2895 3116 3.100817 TCGTGTAATAACTAGCGCGAAC 58.899 45.455 12.10 0.00 40.20 3.95
2896 3117 2.847717 CGTGTAATAACTAGCGCGAACA 59.152 45.455 12.10 0.00 37.06 3.18
2897 3118 3.300754 CGTGTAATAACTAGCGCGAACAC 60.301 47.826 12.10 6.29 37.06 3.32
2898 3119 3.000376 GTGTAATAACTAGCGCGAACACC 60.000 47.826 12.10 0.00 31.96 4.16
2899 3120 2.667473 AATAACTAGCGCGAACACCT 57.333 45.000 12.10 0.00 0.00 4.00
2900 3121 3.788333 AATAACTAGCGCGAACACCTA 57.212 42.857 12.10 0.00 0.00 3.08
2901 3122 3.788333 ATAACTAGCGCGAACACCTAA 57.212 42.857 12.10 0.00 0.00 2.69
2902 3123 2.443887 AACTAGCGCGAACACCTAAA 57.556 45.000 12.10 0.00 0.00 1.85
2903 3124 2.443887 ACTAGCGCGAACACCTAAAA 57.556 45.000 12.10 0.00 0.00 1.52
2904 3125 2.758009 ACTAGCGCGAACACCTAAAAA 58.242 42.857 12.10 0.00 0.00 1.94
2930 3151 3.624410 TGTAATAACTAGCGCGAGAGTCA 59.376 43.478 24.88 4.94 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.819105 TTTATTCTGGCTCTCTTTCGGA 57.181 40.909 0.00 0.00 0.00 4.55
1 2 4.260948 GCATTTATTCTGGCTCTCTTTCGG 60.261 45.833 0.00 0.00 0.00 4.30
2 3 4.551603 CGCATTTATTCTGGCTCTCTTTCG 60.552 45.833 0.00 0.00 0.00 3.46
3 4 4.572389 TCGCATTTATTCTGGCTCTCTTTC 59.428 41.667 0.00 0.00 0.00 2.62
4 5 4.517285 TCGCATTTATTCTGGCTCTCTTT 58.483 39.130 0.00 0.00 0.00 2.52
5 6 4.125703 CTCGCATTTATTCTGGCTCTCTT 58.874 43.478 0.00 0.00 0.00 2.85
6 7 3.726607 CTCGCATTTATTCTGGCTCTCT 58.273 45.455 0.00 0.00 0.00 3.10
7 8 2.222911 GCTCGCATTTATTCTGGCTCTC 59.777 50.000 0.00 0.00 0.00 3.20
8 9 2.216898 GCTCGCATTTATTCTGGCTCT 58.783 47.619 0.00 0.00 0.00 4.09
9 10 1.942657 TGCTCGCATTTATTCTGGCTC 59.057 47.619 0.00 0.00 0.00 4.70
10 11 1.672881 GTGCTCGCATTTATTCTGGCT 59.327 47.619 0.00 0.00 0.00 4.75
11 12 1.268743 GGTGCTCGCATTTATTCTGGC 60.269 52.381 0.00 0.00 0.00 4.85
12 13 2.016318 TGGTGCTCGCATTTATTCTGG 58.984 47.619 0.00 0.00 0.00 3.86
13 14 2.032550 CCTGGTGCTCGCATTTATTCTG 59.967 50.000 0.00 0.00 0.00 3.02
14 15 2.092968 TCCTGGTGCTCGCATTTATTCT 60.093 45.455 0.00 0.00 0.00 2.40
15 16 2.032178 GTCCTGGTGCTCGCATTTATTC 59.968 50.000 0.00 0.00 0.00 1.75
16 17 2.017049 GTCCTGGTGCTCGCATTTATT 58.983 47.619 0.00 0.00 0.00 1.40
17 18 1.210478 AGTCCTGGTGCTCGCATTTAT 59.790 47.619 0.00 0.00 0.00 1.40
18 19 0.613260 AGTCCTGGTGCTCGCATTTA 59.387 50.000 0.00 0.00 0.00 1.40
19 20 0.250901 AAGTCCTGGTGCTCGCATTT 60.251 50.000 0.00 0.00 0.00 2.32
20 21 0.957395 CAAGTCCTGGTGCTCGCATT 60.957 55.000 0.00 0.00 0.00 3.56
21 22 1.376424 CAAGTCCTGGTGCTCGCAT 60.376 57.895 0.00 0.00 0.00 4.73
22 23 2.031012 CAAGTCCTGGTGCTCGCA 59.969 61.111 0.00 0.00 0.00 5.10
23 24 1.301716 TTCAAGTCCTGGTGCTCGC 60.302 57.895 0.00 0.00 0.00 5.03
24 25 0.951040 GGTTCAAGTCCTGGTGCTCG 60.951 60.000 0.00 0.00 0.00 5.03
25 26 0.606673 GGGTTCAAGTCCTGGTGCTC 60.607 60.000 0.00 0.00 0.00 4.26
26 27 1.062488 AGGGTTCAAGTCCTGGTGCT 61.062 55.000 0.00 0.00 31.11 4.40
27 28 0.890996 CAGGGTTCAAGTCCTGGTGC 60.891 60.000 0.00 0.00 44.99 5.01
28 29 3.329300 CAGGGTTCAAGTCCTGGTG 57.671 57.895 0.00 0.00 44.99 4.17
32 33 2.069165 GCCACCAGGGTTCAAGTCCT 62.069 60.000 0.00 0.00 39.65 3.85
33 34 1.603739 GCCACCAGGGTTCAAGTCC 60.604 63.158 0.00 0.00 39.65 3.85
34 35 1.603739 GGCCACCAGGGTTCAAGTC 60.604 63.158 0.00 0.00 39.65 3.01
35 36 2.084930 AGGCCACCAGGGTTCAAGT 61.085 57.895 5.01 0.00 39.65 3.16
36 37 1.604593 CAGGCCACCAGGGTTCAAG 60.605 63.158 5.01 0.00 39.65 3.02
37 38 2.520458 CAGGCCACCAGGGTTCAA 59.480 61.111 5.01 0.00 39.65 2.69
38 39 3.579302 CCAGGCCACCAGGGTTCA 61.579 66.667 5.01 0.00 39.65 3.18
39 40 4.366684 CCCAGGCCACCAGGGTTC 62.367 72.222 5.01 0.00 44.27 3.62
43 44 2.368192 TATCCCCAGGCCACCAGG 60.368 66.667 5.01 0.22 38.23 4.45
44 45 2.757124 GGTATCCCCAGGCCACCAG 61.757 68.421 5.01 0.00 0.00 4.00
45 46 2.694616 GGTATCCCCAGGCCACCA 60.695 66.667 5.01 0.00 0.00 4.17
46 47 2.694616 TGGTATCCCCAGGCCACC 60.695 66.667 5.01 1.54 38.72 4.61
47 48 2.270874 CTGTGGTATCCCCAGGCCAC 62.271 65.000 5.01 6.29 46.45 5.01
48 49 2.000701 CTGTGGTATCCCCAGGCCA 61.001 63.158 5.01 0.00 46.45 5.36
49 50 1.984288 GACTGTGGTATCCCCAGGCC 61.984 65.000 0.00 0.00 46.45 5.19
50 51 0.983378 AGACTGTGGTATCCCCAGGC 60.983 60.000 3.65 0.01 46.45 4.85
51 52 1.123928 GAGACTGTGGTATCCCCAGG 58.876 60.000 3.65 0.00 46.45 4.45
52 53 2.035632 GAGAGACTGTGGTATCCCCAG 58.964 57.143 0.00 0.00 46.45 4.45
53 54 1.646447 AGAGAGACTGTGGTATCCCCA 59.354 52.381 0.00 0.00 42.51 4.96
54 55 2.463047 AGAGAGACTGTGGTATCCCC 57.537 55.000 0.00 0.00 34.54 4.81
55 56 3.637694 GGTTAGAGAGACTGTGGTATCCC 59.362 52.174 0.00 0.00 34.54 3.85
56 57 3.315749 CGGTTAGAGAGACTGTGGTATCC 59.684 52.174 0.00 0.00 34.54 2.59
57 58 3.946558 ACGGTTAGAGAGACTGTGGTATC 59.053 47.826 0.00 0.00 35.39 2.24
58 59 3.946558 GACGGTTAGAGAGACTGTGGTAT 59.053 47.826 0.00 0.00 36.77 2.73
59 60 3.008813 AGACGGTTAGAGAGACTGTGGTA 59.991 47.826 0.00 0.00 36.77 3.25
60 61 2.161030 GACGGTTAGAGAGACTGTGGT 58.839 52.381 0.00 0.00 36.77 4.16
61 62 2.438411 AGACGGTTAGAGAGACTGTGG 58.562 52.381 0.00 0.00 36.77 4.17
62 63 4.142643 GGTTAGACGGTTAGAGAGACTGTG 60.143 50.000 0.00 0.00 36.77 3.66
63 64 4.009002 GGTTAGACGGTTAGAGAGACTGT 58.991 47.826 0.00 0.00 39.23 3.55
64 65 4.008330 TGGTTAGACGGTTAGAGAGACTG 58.992 47.826 0.00 0.00 0.00 3.51
65 66 4.298103 TGGTTAGACGGTTAGAGAGACT 57.702 45.455 0.00 0.00 0.00 3.24
66 67 5.239087 CCTATGGTTAGACGGTTAGAGAGAC 59.761 48.000 0.00 0.00 0.00 3.36
67 68 5.104193 ACCTATGGTTAGACGGTTAGAGAGA 60.104 44.000 0.00 0.00 27.29 3.10
68 69 5.131784 ACCTATGGTTAGACGGTTAGAGAG 58.868 45.833 0.00 0.00 27.29 3.20
69 70 5.121380 ACCTATGGTTAGACGGTTAGAGA 57.879 43.478 0.00 0.00 27.29 3.10
70 71 5.848833 AACCTATGGTTAGACGGTTAGAG 57.151 43.478 0.00 0.00 44.94 2.43
71 72 7.902920 ATTAACCTATGGTTAGACGGTTAGA 57.097 36.000 8.87 0.00 46.91 2.10
72 73 7.380602 CGAATTAACCTATGGTTAGACGGTTAG 59.619 40.741 8.87 0.64 46.91 2.34
73 74 7.202526 CGAATTAACCTATGGTTAGACGGTTA 58.797 38.462 8.87 0.00 46.91 2.85
74 75 6.044682 CGAATTAACCTATGGTTAGACGGTT 58.955 40.000 8.87 0.00 46.91 4.44
75 76 5.594926 CGAATTAACCTATGGTTAGACGGT 58.405 41.667 8.87 0.00 46.91 4.83
76 77 4.446719 GCGAATTAACCTATGGTTAGACGG 59.553 45.833 20.61 11.25 46.91 4.79
77 78 4.147653 CGCGAATTAACCTATGGTTAGACG 59.852 45.833 0.00 17.85 46.91 4.18
78 79 4.446719 CCGCGAATTAACCTATGGTTAGAC 59.553 45.833 8.23 5.07 46.91 2.59
79 80 4.501915 CCCGCGAATTAACCTATGGTTAGA 60.502 45.833 8.23 2.78 46.91 2.10
80 81 3.744426 CCCGCGAATTAACCTATGGTTAG 59.256 47.826 8.23 0.63 46.91 2.34
81 82 3.494749 CCCCGCGAATTAACCTATGGTTA 60.495 47.826 8.23 5.20 44.94 2.85
83 84 1.202722 CCCCGCGAATTAACCTATGGT 60.203 52.381 8.23 0.00 37.65 3.55
84 85 1.071071 TCCCCGCGAATTAACCTATGG 59.929 52.381 8.23 0.00 0.00 2.74
85 86 2.413837 CTCCCCGCGAATTAACCTATG 58.586 52.381 8.23 0.00 0.00 2.23
86 87 1.346722 CCTCCCCGCGAATTAACCTAT 59.653 52.381 8.23 0.00 0.00 2.57
87 88 0.754472 CCTCCCCGCGAATTAACCTA 59.246 55.000 8.23 0.00 0.00 3.08
88 89 1.269703 ACCTCCCCGCGAATTAACCT 61.270 55.000 8.23 0.00 0.00 3.50
89 90 0.393402 AACCTCCCCGCGAATTAACC 60.393 55.000 8.23 0.00 0.00 2.85
90 91 1.456296 AAACCTCCCCGCGAATTAAC 58.544 50.000 8.23 0.00 0.00 2.01
91 92 2.236893 ACTAAACCTCCCCGCGAATTAA 59.763 45.455 8.23 0.00 0.00 1.40
92 93 1.832998 ACTAAACCTCCCCGCGAATTA 59.167 47.619 8.23 0.00 0.00 1.40
93 94 0.616891 ACTAAACCTCCCCGCGAATT 59.383 50.000 8.23 0.00 0.00 2.17
94 95 0.616891 AACTAAACCTCCCCGCGAAT 59.383 50.000 8.23 0.00 0.00 3.34
95 96 0.320946 CAACTAAACCTCCCCGCGAA 60.321 55.000 8.23 0.00 0.00 4.70
96 97 1.294138 CAACTAAACCTCCCCGCGA 59.706 57.895 8.23 0.00 0.00 5.87
97 98 0.604511 AACAACTAAACCTCCCCGCG 60.605 55.000 0.00 0.00 0.00 6.46
98 99 2.353323 CTAACAACTAAACCTCCCCGC 58.647 52.381 0.00 0.00 0.00 6.13
99 100 2.355412 CCCTAACAACTAAACCTCCCCG 60.355 54.545 0.00 0.00 0.00 5.73
104 105 6.183361 ACGTAAACTCCCTAACAACTAAACCT 60.183 38.462 0.00 0.00 0.00 3.50
107 108 9.040939 GTTTACGTAAACTCCCTAACAACTAAA 57.959 33.333 33.52 3.95 41.65 1.85
108 109 8.587952 GTTTACGTAAACTCCCTAACAACTAA 57.412 34.615 33.52 2.56 41.65 2.24
133 134 4.959596 TCTACAAAGAGCTACGTACCAG 57.040 45.455 0.00 0.00 0.00 4.00
134 135 4.703575 ACATCTACAAAGAGCTACGTACCA 59.296 41.667 0.00 0.00 34.49 3.25
136 137 6.259608 TCCTACATCTACAAAGAGCTACGTAC 59.740 42.308 0.00 0.00 34.49 3.67
137 138 6.351711 TCCTACATCTACAAAGAGCTACGTA 58.648 40.000 0.00 0.00 34.49 3.57
138 139 5.191426 TCCTACATCTACAAAGAGCTACGT 58.809 41.667 0.00 0.00 34.49 3.57
149 150 6.459670 TGCTACGAAAATCCTACATCTACA 57.540 37.500 0.00 0.00 0.00 2.74
178 179 0.756815 GGCATGATCCCCCAACCTTC 60.757 60.000 0.00 0.00 0.00 3.46
197 198 2.221749 CGAACCATGATGTTATCTGGCG 59.778 50.000 0.00 0.00 33.57 5.69
199 200 3.808728 ACCGAACCATGATGTTATCTGG 58.191 45.455 0.00 0.00 35.24 3.86
219 220 5.490139 TGTACGTGTAGCATTACTCCTAC 57.510 43.478 0.00 0.00 35.60 3.18
220 221 6.513806 TTTGTACGTGTAGCATTACTCCTA 57.486 37.500 0.00 0.00 0.00 2.94
221 222 5.395682 TTTGTACGTGTAGCATTACTCCT 57.604 39.130 0.00 0.00 0.00 3.69
222 223 5.063060 CCTTTTGTACGTGTAGCATTACTCC 59.937 44.000 0.00 0.00 0.00 3.85
223 224 5.865552 TCCTTTTGTACGTGTAGCATTACTC 59.134 40.000 0.00 0.00 0.00 2.59
224 225 5.786311 TCCTTTTGTACGTGTAGCATTACT 58.214 37.500 0.00 0.00 0.00 2.24
225 226 6.657836 ATCCTTTTGTACGTGTAGCATTAC 57.342 37.500 0.00 0.00 0.00 1.89
226 227 7.321908 TGTATCCTTTTGTACGTGTAGCATTA 58.678 34.615 0.00 0.00 0.00 1.90
227 228 6.167685 TGTATCCTTTTGTACGTGTAGCATT 58.832 36.000 0.00 0.00 0.00 3.56
228 229 5.726397 TGTATCCTTTTGTACGTGTAGCAT 58.274 37.500 0.00 0.00 0.00 3.79
229 230 5.136816 TGTATCCTTTTGTACGTGTAGCA 57.863 39.130 0.00 0.00 0.00 3.49
230 231 5.501897 GCATGTATCCTTTTGTACGTGTAGC 60.502 44.000 0.00 0.00 39.10 3.58
231 232 5.810587 AGCATGTATCCTTTTGTACGTGTAG 59.189 40.000 0.00 0.00 39.10 2.74
232 233 5.726397 AGCATGTATCCTTTTGTACGTGTA 58.274 37.500 0.00 0.00 39.10 2.90
233 234 4.575885 AGCATGTATCCTTTTGTACGTGT 58.424 39.130 0.00 0.00 39.10 4.49
234 235 5.545658 AAGCATGTATCCTTTTGTACGTG 57.454 39.130 0.00 0.00 39.61 4.49
235 236 6.569179 AAAAGCATGTATCCTTTTGTACGT 57.431 33.333 7.67 0.00 34.60 3.57
236 237 7.523219 TGTAAAAGCATGTATCCTTTTGTACG 58.477 34.615 15.10 0.00 34.60 3.67
242 243 9.255029 ACCTTTATGTAAAAGCATGTATCCTTT 57.745 29.630 0.00 0.00 32.98 3.11
243 244 8.686334 CACCTTTATGTAAAAGCATGTATCCTT 58.314 33.333 0.00 0.00 0.00 3.36
244 245 8.052748 TCACCTTTATGTAAAAGCATGTATCCT 58.947 33.333 0.00 0.00 0.00 3.24
245 246 8.220755 TCACCTTTATGTAAAAGCATGTATCC 57.779 34.615 0.00 0.00 0.00 2.59
246 247 8.893727 ACTCACCTTTATGTAAAAGCATGTATC 58.106 33.333 0.00 0.00 0.00 2.24
247 248 8.807948 ACTCACCTTTATGTAAAAGCATGTAT 57.192 30.769 0.00 0.00 0.00 2.29
248 249 8.630054 AACTCACCTTTATGTAAAAGCATGTA 57.370 30.769 0.00 0.00 0.00 2.29
249 250 7.524717 AACTCACCTTTATGTAAAAGCATGT 57.475 32.000 0.00 0.00 0.00 3.21
250 251 8.702438 CAAAACTCACCTTTATGTAAAAGCATG 58.298 33.333 0.00 0.00 0.00 4.06
251 252 8.637986 TCAAAACTCACCTTTATGTAAAAGCAT 58.362 29.630 0.00 0.00 0.00 3.79
252 253 8.001881 TCAAAACTCACCTTTATGTAAAAGCA 57.998 30.769 0.00 0.00 0.00 3.91
253 254 9.476202 AATCAAAACTCACCTTTATGTAAAAGC 57.524 29.630 0.00 0.00 0.00 3.51
255 256 9.757227 CCAATCAAAACTCACCTTTATGTAAAA 57.243 29.630 0.00 0.00 0.00 1.52
256 257 9.137459 TCCAATCAAAACTCACCTTTATGTAAA 57.863 29.630 0.00 0.00 0.00 2.01
257 258 8.698973 TCCAATCAAAACTCACCTTTATGTAA 57.301 30.769 0.00 0.00 0.00 2.41
258 259 8.160765 TCTCCAATCAAAACTCACCTTTATGTA 58.839 33.333 0.00 0.00 0.00 2.29
259 260 7.004086 TCTCCAATCAAAACTCACCTTTATGT 58.996 34.615 0.00 0.00 0.00 2.29
260 261 7.452880 TCTCCAATCAAAACTCACCTTTATG 57.547 36.000 0.00 0.00 0.00 1.90
261 262 8.655935 AATCTCCAATCAAAACTCACCTTTAT 57.344 30.769 0.00 0.00 0.00 1.40
262 263 9.581289 TTAATCTCCAATCAAAACTCACCTTTA 57.419 29.630 0.00 0.00 0.00 1.85
263 264 6.983906 AATCTCCAATCAAAACTCACCTTT 57.016 33.333 0.00 0.00 0.00 3.11
264 265 7.177392 CCTTAATCTCCAATCAAAACTCACCTT 59.823 37.037 0.00 0.00 0.00 3.50
265 266 6.660949 CCTTAATCTCCAATCAAAACTCACCT 59.339 38.462 0.00 0.00 0.00 4.00
266 267 6.127619 CCCTTAATCTCCAATCAAAACTCACC 60.128 42.308 0.00 0.00 0.00 4.02
267 268 6.127619 CCCCTTAATCTCCAATCAAAACTCAC 60.128 42.308 0.00 0.00 0.00 3.51
268 269 5.951747 CCCCTTAATCTCCAATCAAAACTCA 59.048 40.000 0.00 0.00 0.00 3.41
269 270 5.360999 CCCCCTTAATCTCCAATCAAAACTC 59.639 44.000 0.00 0.00 0.00 3.01
270 271 5.016245 TCCCCCTTAATCTCCAATCAAAACT 59.984 40.000 0.00 0.00 0.00 2.66
271 272 5.269189 TCCCCCTTAATCTCCAATCAAAAC 58.731 41.667 0.00 0.00 0.00 2.43
272 273 5.255207 TCTCCCCCTTAATCTCCAATCAAAA 59.745 40.000 0.00 0.00 0.00 2.44
273 274 4.793520 TCTCCCCCTTAATCTCCAATCAAA 59.206 41.667 0.00 0.00 0.00 2.69
274 275 4.379875 TCTCCCCCTTAATCTCCAATCAA 58.620 43.478 0.00 0.00 0.00 2.57
275 276 4.021007 TCTCCCCCTTAATCTCCAATCA 57.979 45.455 0.00 0.00 0.00 2.57
276 277 4.202514 CCTTCTCCCCCTTAATCTCCAATC 60.203 50.000 0.00 0.00 0.00 2.67
277 278 3.724209 CCTTCTCCCCCTTAATCTCCAAT 59.276 47.826 0.00 0.00 0.00 3.16
278 279 3.123273 CCTTCTCCCCCTTAATCTCCAA 58.877 50.000 0.00 0.00 0.00 3.53
279 280 2.632360 CCCTTCTCCCCCTTAATCTCCA 60.632 54.545 0.00 0.00 0.00 3.86
280 281 2.058705 CCCTTCTCCCCCTTAATCTCC 58.941 57.143 0.00 0.00 0.00 3.71
281 282 2.058705 CCCCTTCTCCCCCTTAATCTC 58.941 57.143 0.00 0.00 0.00 2.75
282 283 1.982261 GCCCCTTCTCCCCCTTAATCT 60.982 57.143 0.00 0.00 0.00 2.40
283 284 0.478942 GCCCCTTCTCCCCCTTAATC 59.521 60.000 0.00 0.00 0.00 1.75
284 285 0.254107 TGCCCCTTCTCCCCCTTAAT 60.254 55.000 0.00 0.00 0.00 1.40
285 286 1.164789 TGCCCCTTCTCCCCCTTAA 59.835 57.895 0.00 0.00 0.00 1.85
286 287 1.618447 GTGCCCCTTCTCCCCCTTA 60.618 63.158 0.00 0.00 0.00 2.69
287 288 2.941583 GTGCCCCTTCTCCCCCTT 60.942 66.667 0.00 0.00 0.00 3.95
288 289 4.285790 TGTGCCCCTTCTCCCCCT 62.286 66.667 0.00 0.00 0.00 4.79
289 290 4.048470 GTGTGCCCCTTCTCCCCC 62.048 72.222 0.00 0.00 0.00 5.40
290 291 2.936032 AGTGTGCCCCTTCTCCCC 60.936 66.667 0.00 0.00 0.00 4.81
291 292 1.904990 GAGAGTGTGCCCCTTCTCCC 61.905 65.000 0.00 0.00 31.95 4.30
292 293 1.194781 TGAGAGTGTGCCCCTTCTCC 61.195 60.000 0.00 0.00 36.17 3.71
293 294 0.908198 ATGAGAGTGTGCCCCTTCTC 59.092 55.000 0.00 0.00 37.24 2.87
294 295 0.617413 CATGAGAGTGTGCCCCTTCT 59.383 55.000 0.00 0.00 0.00 2.85
295 296 0.615331 TCATGAGAGTGTGCCCCTTC 59.385 55.000 0.00 0.00 0.00 3.46
296 297 1.067295 TTCATGAGAGTGTGCCCCTT 58.933 50.000 0.00 0.00 0.00 3.95
297 298 1.067295 TTTCATGAGAGTGTGCCCCT 58.933 50.000 0.00 0.00 0.00 4.79
298 299 1.909700 TTTTCATGAGAGTGTGCCCC 58.090 50.000 0.00 0.00 0.00 5.80
299 300 3.772060 GATTTTCATGAGAGTGTGCCC 57.228 47.619 0.00 0.00 0.00 5.36
639 640 5.275494 ACAAAGGTTTACATGCGTTTACAC 58.725 37.500 0.00 0.00 0.00 2.90
640 641 5.502153 ACAAAGGTTTACATGCGTTTACA 57.498 34.783 0.00 0.00 0.00 2.41
641 642 7.079475 ACATACAAAGGTTTACATGCGTTTAC 58.921 34.615 0.00 0.00 0.00 2.01
642 643 7.204496 ACATACAAAGGTTTACATGCGTTTA 57.796 32.000 0.00 0.00 0.00 2.01
643 644 6.079424 ACATACAAAGGTTTACATGCGTTT 57.921 33.333 0.00 0.00 0.00 3.60
644 645 5.699097 ACATACAAAGGTTTACATGCGTT 57.301 34.783 0.00 0.00 0.00 4.84
645 646 5.699097 AACATACAAAGGTTTACATGCGT 57.301 34.783 0.00 0.00 0.00 5.24
646 647 6.250527 GCTAAACATACAAAGGTTTACATGCG 59.749 38.462 0.00 0.00 40.00 4.73
647 648 7.087639 TGCTAAACATACAAAGGTTTACATGC 58.912 34.615 0.00 0.00 40.00 4.06
648 649 9.638239 AATGCTAAACATACAAAGGTTTACATG 57.362 29.630 0.00 0.00 40.00 3.21
654 655 9.638239 CACAATAATGCTAAACATACAAAGGTT 57.362 29.630 0.00 0.00 38.34 3.50
655 656 8.802267 ACACAATAATGCTAAACATACAAAGGT 58.198 29.630 0.00 0.00 38.34 3.50
656 657 9.638239 AACACAATAATGCTAAACATACAAAGG 57.362 29.630 0.00 0.00 38.34 3.11
659 660 9.416794 CCAAACACAATAATGCTAAACATACAA 57.583 29.630 0.00 0.00 38.34 2.41
660 661 8.580720 ACCAAACACAATAATGCTAAACATACA 58.419 29.630 0.00 0.00 38.34 2.29
661 662 8.859156 CACCAAACACAATAATGCTAAACATAC 58.141 33.333 0.00 0.00 38.34 2.39
662 663 8.031864 CCACCAAACACAATAATGCTAAACATA 58.968 33.333 0.00 0.00 38.34 2.29
663 664 6.873076 CCACCAAACACAATAATGCTAAACAT 59.127 34.615 0.00 0.00 42.30 2.71
664 665 6.183360 ACCACCAAACACAATAATGCTAAACA 60.183 34.615 0.00 0.00 0.00 2.83
665 666 6.220201 ACCACCAAACACAATAATGCTAAAC 58.780 36.000 0.00 0.00 0.00 2.01
666 667 6.412362 ACCACCAAACACAATAATGCTAAA 57.588 33.333 0.00 0.00 0.00 1.85
667 668 6.412362 AACCACCAAACACAATAATGCTAA 57.588 33.333 0.00 0.00 0.00 3.09
668 669 5.047660 GGAACCACCAAACACAATAATGCTA 60.048 40.000 0.00 0.00 38.79 3.49
669 670 4.262420 GGAACCACCAAACACAATAATGCT 60.262 41.667 0.00 0.00 38.79 3.79
670 671 3.993736 GGAACCACCAAACACAATAATGC 59.006 43.478 0.00 0.00 38.79 3.56
751 753 8.967218 TGATTCTGCTTGTTTAATTTTCTTTCG 58.033 29.630 0.00 0.00 0.00 3.46
779 781 8.626526 GTTGAGGGATTAAGTTGTTCAGTTTAA 58.373 33.333 0.00 0.00 0.00 1.52
784 786 7.444183 TGTTAGTTGAGGGATTAAGTTGTTCAG 59.556 37.037 0.00 0.00 0.00 3.02
785 787 7.284074 TGTTAGTTGAGGGATTAAGTTGTTCA 58.716 34.615 0.00 0.00 0.00 3.18
825 828 7.419518 CCACCTCATAGATAAACCACTTGAGAT 60.420 40.741 0.00 0.00 32.77 2.75
889 892 9.403583 TCATATTTATAGGTGGGAAAAGTGAAC 57.596 33.333 0.00 0.00 0.00 3.18
973 978 3.068873 CCTAGTTAGCTGATGGACCTGTC 59.931 52.174 0.00 0.00 0.00 3.51
1404 1422 1.255667 GGACGTGGAAGCTGACCCTA 61.256 60.000 0.00 0.00 0.00 3.53
1494 1512 1.079750 GACGAGGGTGCTGAGGTTC 60.080 63.158 0.00 0.00 0.00 3.62
1899 1951 1.581934 CGCTGCCCTTGATTTCGATA 58.418 50.000 0.00 0.00 0.00 2.92
1965 2020 0.600057 TTTGCGTATGTGCATTGCCA 59.400 45.000 6.12 4.27 45.78 4.92
1966 2021 1.655099 CTTTTGCGTATGTGCATTGCC 59.345 47.619 6.12 0.00 45.78 4.52
1967 2022 1.059549 GCTTTTGCGTATGTGCATTGC 59.940 47.619 0.46 0.46 45.78 3.56
1991 2046 8.852671 TGGGATAAAATGGGATCAAAATAGTT 57.147 30.769 0.00 0.00 0.00 2.24
2004 2102 5.466393 GCCAATCGAAAATGGGATAAAATGG 59.534 40.000 14.73 0.00 37.19 3.16
2011 2109 2.738743 ACAGCCAATCGAAAATGGGAT 58.261 42.857 14.73 0.00 37.19 3.85
2028 2126 5.067023 GCAGATGGGAAGGAATTCTTTACAG 59.933 44.000 13.99 2.59 35.50 2.74
2052 2150 1.506262 CCGAGCAATGAAAACCCCG 59.494 57.895 0.00 0.00 0.00 5.73
2158 2284 9.823647 ATACCACATACAAATCAAACAACAAAA 57.176 25.926 0.00 0.00 0.00 2.44
2345 2512 4.285863 TCTTTTGGCATTTAGGGTATGGG 58.714 43.478 0.00 0.00 0.00 4.00
2346 2513 5.067805 GTCTCTTTTGGCATTTAGGGTATGG 59.932 44.000 0.00 0.00 0.00 2.74
2347 2514 5.067805 GGTCTCTTTTGGCATTTAGGGTATG 59.932 44.000 0.00 0.00 0.00 2.39
2348 2515 5.044105 AGGTCTCTTTTGGCATTTAGGGTAT 60.044 40.000 0.00 0.00 0.00 2.73
2380 2547 2.471749 CCACGTCGTTTTGAATAGCGTC 60.472 50.000 0.00 0.00 0.00 5.19
2385 2552 2.475864 CGAACCCACGTCGTTTTGAATA 59.524 45.455 0.00 0.00 0.00 1.75
2386 2553 1.262151 CGAACCCACGTCGTTTTGAAT 59.738 47.619 0.00 0.00 0.00 2.57
2387 2554 0.651551 CGAACCCACGTCGTTTTGAA 59.348 50.000 0.00 0.00 0.00 2.69
2406 2605 3.435186 GGTTGGCCGAGCTTCAGC 61.435 66.667 15.33 0.00 42.49 4.26
2421 2620 3.732892 CCAAAATGCGGCGTCGGT 61.733 61.111 13.05 0.00 36.79 4.69
2557 2757 9.365906 TGGACAATTTGGTAATATATGCTGAAT 57.634 29.630 0.78 0.00 0.00 2.57
2649 2849 7.951565 GTGAACAATGTTTGAAAAAGTGAACAG 59.048 33.333 2.19 0.00 35.69 3.16
2782 3003 3.882888 TGCAGAACCGAGTTTCTTTTGAT 59.117 39.130 0.00 0.00 33.31 2.57
2784 3005 3.691049 TGCAGAACCGAGTTTCTTTTG 57.309 42.857 0.00 0.00 33.31 2.44
2826 3047 1.866483 ATGCTTGATCCACAGCCCCA 61.866 55.000 6.27 0.00 0.00 4.96
2834 3055 4.102054 TGATGAGCTCTAATGCTTGATCCA 59.898 41.667 16.19 0.00 44.17 3.41
2850 3071 3.068873 CCTTACCAGTAGACCTGATGAGC 59.931 52.174 0.00 0.00 44.49 4.26
2858 3079 3.022406 ACACGATCCTTACCAGTAGACC 58.978 50.000 0.00 0.00 0.00 3.85
2876 3097 3.000376 GGTGTTCGCGCTAGTTATTACAC 60.000 47.826 5.56 4.76 35.21 2.90
2877 3098 3.119388 AGGTGTTCGCGCTAGTTATTACA 60.119 43.478 5.56 0.00 0.00 2.41
2878 3099 3.442100 AGGTGTTCGCGCTAGTTATTAC 58.558 45.455 5.56 0.00 0.00 1.89
2879 3100 3.788333 AGGTGTTCGCGCTAGTTATTA 57.212 42.857 5.56 0.00 0.00 0.98
2880 3101 2.667473 AGGTGTTCGCGCTAGTTATT 57.333 45.000 5.56 0.00 0.00 1.40
2881 3102 3.788333 TTAGGTGTTCGCGCTAGTTAT 57.212 42.857 5.56 0.00 0.00 1.89
2882 3103 3.574284 TTTAGGTGTTCGCGCTAGTTA 57.426 42.857 5.56 0.00 0.00 2.24
2883 3104 2.443887 TTTAGGTGTTCGCGCTAGTT 57.556 45.000 5.56 0.00 0.00 2.24
2884 3105 2.443887 TTTTAGGTGTTCGCGCTAGT 57.556 45.000 5.56 0.00 0.00 2.57
2903 3124 6.534079 ACTCTCGCGCTAGTTATTACATTTTT 59.466 34.615 8.95 0.00 0.00 1.94
2904 3125 6.040878 ACTCTCGCGCTAGTTATTACATTTT 58.959 36.000 8.95 0.00 0.00 1.82
2905 3126 5.589192 ACTCTCGCGCTAGTTATTACATTT 58.411 37.500 8.95 0.00 0.00 2.32
2906 3127 5.184340 ACTCTCGCGCTAGTTATTACATT 57.816 39.130 8.95 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.