Multiple sequence alignment - TraesCS2B01G172500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G172500 chr2B 100.000 3784 0 0 1 3784 146782416 146778633 0.000000e+00 6988.0
1 TraesCS2B01G172500 chr2B 93.636 1257 63 9 1 1242 146806567 146805313 0.000000e+00 1862.0
2 TraesCS2B01G172500 chr2D 96.546 1158 36 2 1407 2563 95215868 95214714 0.000000e+00 1914.0
3 TraesCS2B01G172500 chr2D 85.337 1630 183 30 1392 2988 95175489 95173883 0.000000e+00 1635.0
4 TraesCS2B01G172500 chr2D 92.485 825 54 5 2227 3044 95277991 95277168 0.000000e+00 1173.0
5 TraesCS2B01G172500 chr2D 91.433 677 47 4 1392 2060 95278664 95277991 0.000000e+00 918.0
6 TraesCS2B01G172500 chr2D 95.644 528 19 3 692 1217 95216537 95216012 0.000000e+00 845.0
7 TraesCS2B01G172500 chr2D 95.335 493 17 3 2558 3044 95203904 95203412 0.000000e+00 778.0
8 TraesCS2B01G172500 chr2D 93.460 367 18 4 3395 3757 95202915 95202551 1.200000e-149 540.0
9 TraesCS2B01G172500 chr2D 97.917 144 3 0 1341 1484 95216011 95215868 2.260000e-62 250.0
10 TraesCS2B01G172500 chr2D 90.104 192 12 4 3599 3784 95277129 95276939 3.780000e-60 243.0
11 TraesCS2B01G172500 chr2D 96.581 117 2 2 1236 1351 272263064 272263179 3.860000e-45 193.0
12 TraesCS2B01G172500 chr2D 85.294 136 18 1 787 920 95177045 95176910 5.100000e-29 139.0
13 TraesCS2B01G172500 chr7A 98.714 311 3 1 3036 3345 209519942 209519632 5.520000e-153 551.0
14 TraesCS2B01G172500 chr7A 98.392 311 4 1 3036 3345 248333520 248333210 2.570000e-151 545.0
15 TraesCS2B01G172500 chr7A 97.749 311 6 1 3038 3347 515273640 515273330 5.560000e-148 534.0
16 TraesCS2B01G172500 chr4A 97.756 312 6 1 3038 3349 27552376 27552686 1.550000e-148 536.0
17 TraesCS2B01G172500 chr4A 98.198 111 2 0 1236 1346 737204853 737204743 1.070000e-45 195.0
18 TraesCS2B01G172500 chr6A 96.584 322 9 2 3030 3349 44858426 44858105 2.000000e-147 532.0
19 TraesCS2B01G172500 chr6A 96.273 322 10 2 3030 3349 44853418 44853097 9.310000e-146 527.0
20 TraesCS2B01G172500 chr6A 95.652 322 12 2 3030 3349 44838628 44838307 2.020000e-142 516.0
21 TraesCS2B01G172500 chr6A 88.462 104 11 1 366 468 73662799 73662696 1.430000e-24 124.0
22 TraesCS2B01G172500 chr3D 96.795 312 10 0 3036 3347 32905309 32904998 4.330000e-144 521.0
23 TraesCS2B01G172500 chr3D 81.050 343 50 13 311 644 482486356 482486692 3.750000e-65 259.0
24 TraesCS2B01G172500 chr4D 96.463 311 11 0 3038 3348 221433905 221433595 7.250000e-142 514.0
25 TraesCS2B01G172500 chr5D 92.675 314 19 1 1 310 340576661 340576348 2.070000e-122 449.0
26 TraesCS2B01G172500 chr5D 91.909 309 24 1 3 310 86587187 86587495 7.510000e-117 431.0
27 TraesCS2B01G172500 chr5D 91.318 311 25 2 1 310 495082777 495083086 1.260000e-114 424.0
28 TraesCS2B01G172500 chr6B 91.961 311 23 2 1 310 628807902 628808211 5.800000e-118 435.0
29 TraesCS2B01G172500 chr6B 90.654 321 26 3 1 319 609901888 609901570 1.260000e-114 424.0
30 TraesCS2B01G172500 chr7D 91.693 313 24 1 1 311 116653583 116653271 2.090000e-117 433.0
31 TraesCS2B01G172500 chr7D 90.977 133 10 2 1229 1360 251359479 251359610 1.080000e-40 178.0
32 TraesCS2B01G172500 chr2A 91.456 316 21 2 1 310 82461092 82460777 2.700000e-116 429.0
33 TraesCS2B01G172500 chr2A 91.558 308 23 2 1 308 572426789 572426485 4.520000e-114 422.0
34 TraesCS2B01G172500 chr1D 86.486 185 22 3 459 642 21704253 21704435 2.310000e-47 200.0
35 TraesCS2B01G172500 chr1B 98.230 113 2 0 1233 1345 661509310 661509422 8.290000e-47 198.0
36 TraesCS2B01G172500 chr1B 95.000 120 5 1 1230 1349 687254054 687253936 1.790000e-43 187.0
37 TraesCS2B01G172500 chr1B 83.766 154 21 4 318 470 566127628 566127778 3.940000e-30 143.0
38 TraesCS2B01G172500 chr5B 96.522 115 4 0 1235 1349 145479254 145479140 1.390000e-44 191.0
39 TraesCS2B01G172500 chr7B 93.651 126 6 2 1225 1349 174674135 174674011 1.790000e-43 187.0
40 TraesCS2B01G172500 chr3B 92.913 127 7 2 1235 1361 354378616 354378492 2.320000e-42 183.0
41 TraesCS2B01G172500 chr3B 86.164 159 20 2 312 468 487244700 487244858 1.810000e-38 171.0
42 TraesCS2B01G172500 chr1A 87.097 155 14 6 1191 1343 431676605 431676755 1.810000e-38 171.0
43 TraesCS2B01G172500 chr1A 84.127 63 4 3 1202 1262 372223084 372223142 5.280000e-04 56.5
44 TraesCS2B01G172500 chr3A 75.630 357 58 18 312 646 504606291 504605942 2.350000e-32 150.0
45 TraesCS2B01G172500 chr6D 90.909 66 4 1 3396 3459 84663612 84663677 1.870000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G172500 chr2B 146778633 146782416 3783 True 6988 6988 100.000000 1 3784 1 chr2B.!!$R1 3783
1 TraesCS2B01G172500 chr2B 146805313 146806567 1254 True 1862 1862 93.636000 1 1242 1 chr2B.!!$R2 1241
2 TraesCS2B01G172500 chr2D 95214714 95216537 1823 True 1003 1914 96.702333 692 2563 3 chr2D.!!$R3 1871
3 TraesCS2B01G172500 chr2D 95173883 95177045 3162 True 887 1635 85.315500 787 2988 2 chr2D.!!$R1 2201
4 TraesCS2B01G172500 chr2D 95276939 95278664 1725 True 778 1173 91.340667 1392 3784 3 chr2D.!!$R4 2392
5 TraesCS2B01G172500 chr2D 95202551 95203904 1353 True 659 778 94.397500 2558 3757 2 chr2D.!!$R2 1199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.179056 TGCTAAGCTAACGGATGGGC 60.179 55.0 0.0 0.0 0.00 5.36 F
1251 2346 0.038744 AACTACTCCCTCCGTTCCGA 59.961 55.0 0.0 0.0 0.00 4.55 F
1530 2702 0.892358 CACCAGCCAGCAATGACTGT 60.892 55.0 0.0 0.0 35.83 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1301 2396 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.0 0.0 0.00 3.06 R
2588 3763 0.532573 AGGTGCTCCGTGACATAGTG 59.467 55.000 0.0 0.0 39.05 2.74 R
3351 4548 0.459489 AAACACACACACACATGGGC 59.541 50.000 0.0 0.0 29.20 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.795431 TGAAGAAAGCAATAGCAATAAAACG 57.205 32.000 0.00 0.00 45.49 3.60
29 30 5.637006 AGCAATAGCAATAAAACGGAACA 57.363 34.783 0.00 0.00 45.49 3.18
56 57 0.179056 TGCTAAGCTAACGGATGGGC 60.179 55.000 0.00 0.00 0.00 5.36
94 95 5.608015 TCATTCTCCTAATGATGTGATCCCA 59.392 40.000 0.00 0.00 32.21 4.37
107 118 4.151121 TGTGATCCCATTCAACACATGTT 58.849 39.130 0.00 0.00 36.72 2.71
163 174 6.442541 TGAGCTAGTCTAGTAGAGGCTTAT 57.557 41.667 17.68 3.15 36.38 1.73
166 177 7.879160 TGAGCTAGTCTAGTAGAGGCTTATTAC 59.121 40.741 17.68 9.37 36.38 1.89
296 307 6.313519 ACAACTTTATCATTGCCTCTAGGA 57.686 37.500 0.00 0.00 37.39 2.94
396 407 1.080025 GAGGAGCACGTGTGGGTAC 60.080 63.158 18.38 0.00 0.00 3.34
397 408 1.812686 GAGGAGCACGTGTGGGTACA 61.813 60.000 18.38 0.00 0.00 2.90
410 421 2.183555 GTACAGGAAGACCCGCCG 59.816 66.667 0.00 0.00 40.87 6.46
510 526 3.207669 CCGGGGAGACGACGTAGG 61.208 72.222 0.00 0.00 35.47 3.18
514 530 3.885521 GGAGACGACGTAGGGGCG 61.886 72.222 0.00 0.00 37.94 6.13
541 557 4.862823 GGAGGGGAGAGGGGGACG 62.863 77.778 0.00 0.00 0.00 4.79
599 615 2.689034 AGGAGGGGGCTAGTGTGC 60.689 66.667 0.00 0.00 0.00 4.57
643 659 2.359967 GGAGAGGTTGGGTCGGGAG 61.360 68.421 0.00 0.00 0.00 4.30
687 703 1.004277 GGTCTGGCTTTACCCACATCA 59.996 52.381 0.00 0.00 37.83 3.07
882 900 5.885912 GGTTGCTTCTCATAAAGGTGGATAA 59.114 40.000 0.00 0.00 0.00 1.75
973 2056 3.307059 ACCCTTTGGATCGAGAGAAACAG 60.307 47.826 0.00 0.00 38.43 3.16
1242 2337 6.441088 ACTTCTTTCATGAAACTACTCCCT 57.559 37.500 16.91 0.00 0.00 4.20
1243 2338 6.468543 ACTTCTTTCATGAAACTACTCCCTC 58.531 40.000 16.91 0.00 0.00 4.30
1244 2339 5.422214 TCTTTCATGAAACTACTCCCTCC 57.578 43.478 16.91 0.00 0.00 4.30
1245 2340 3.887621 TTCATGAAACTACTCCCTCCG 57.112 47.619 5.45 0.00 0.00 4.63
1246 2341 2.816411 TCATGAAACTACTCCCTCCGT 58.184 47.619 0.00 0.00 0.00 4.69
1247 2342 3.170717 TCATGAAACTACTCCCTCCGTT 58.829 45.455 0.00 0.00 0.00 4.44
1248 2343 3.194968 TCATGAAACTACTCCCTCCGTTC 59.805 47.826 0.00 0.00 0.00 3.95
1249 2344 1.897802 TGAAACTACTCCCTCCGTTCC 59.102 52.381 0.00 0.00 0.00 3.62
1250 2345 0.893447 AAACTACTCCCTCCGTTCCG 59.107 55.000 0.00 0.00 0.00 4.30
1251 2346 0.038744 AACTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
1252 2347 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
1253 2348 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
1254 2349 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
1255 2350 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1256 2351 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1257 2352 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1258 2353 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1259 2354 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1260 2355 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1261 2356 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1262 2357 3.581755 CTCCGTTCCGAATTACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1263 2358 3.319755 TCCGTTCCGAATTACTTGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
1264 2359 3.061322 CCGTTCCGAATTACTTGTCACA 58.939 45.455 0.00 0.00 0.00 3.58
1265 2360 3.120786 CCGTTCCGAATTACTTGTCACAC 60.121 47.826 0.00 0.00 0.00 3.82
1266 2361 3.421312 CGTTCCGAATTACTTGTCACACG 60.421 47.826 0.00 0.00 0.00 4.49
1267 2362 3.374220 TCCGAATTACTTGTCACACGT 57.626 42.857 0.00 0.00 0.00 4.49
1268 2363 4.502171 TCCGAATTACTTGTCACACGTA 57.498 40.909 0.00 0.00 0.00 3.57
1269 2364 5.063180 TCCGAATTACTTGTCACACGTAT 57.937 39.130 0.00 0.00 0.00 3.06
1270 2365 4.860352 TCCGAATTACTTGTCACACGTATG 59.140 41.667 0.00 0.00 0.00 2.39
1271 2366 4.032445 CCGAATTACTTGTCACACGTATGG 59.968 45.833 0.00 0.00 0.00 2.74
1272 2367 4.860352 CGAATTACTTGTCACACGTATGGA 59.140 41.667 0.00 0.00 0.00 3.41
1273 2368 5.518847 CGAATTACTTGTCACACGTATGGAT 59.481 40.000 0.00 0.00 0.00 3.41
1274 2369 6.507929 CGAATTACTTGTCACACGTATGGATG 60.508 42.308 0.00 0.00 0.00 3.51
1275 2370 3.678056 ACTTGTCACACGTATGGATGT 57.322 42.857 0.00 0.00 0.00 3.06
1276 2371 4.794278 ACTTGTCACACGTATGGATGTA 57.206 40.909 0.00 0.00 0.00 2.29
1277 2372 5.339008 ACTTGTCACACGTATGGATGTAT 57.661 39.130 0.00 0.00 0.00 2.29
1278 2373 5.348986 ACTTGTCACACGTATGGATGTATC 58.651 41.667 0.00 0.00 0.00 2.24
1279 2374 5.127194 ACTTGTCACACGTATGGATGTATCT 59.873 40.000 0.00 0.00 0.00 1.98
1280 2375 6.320418 ACTTGTCACACGTATGGATGTATCTA 59.680 38.462 0.00 0.00 0.00 1.98
1281 2376 6.313744 TGTCACACGTATGGATGTATCTAG 57.686 41.667 0.00 0.00 0.00 2.43
1282 2377 6.059484 TGTCACACGTATGGATGTATCTAGA 58.941 40.000 0.00 0.00 0.00 2.43
1283 2378 6.715264 TGTCACACGTATGGATGTATCTAGAT 59.285 38.462 10.73 10.73 0.00 1.98
1284 2379 7.024171 GTCACACGTATGGATGTATCTAGATG 58.976 42.308 15.79 0.00 0.00 2.90
1285 2380 6.715264 TCACACGTATGGATGTATCTAGATGT 59.285 38.462 15.79 1.25 30.36 3.06
1286 2381 7.881232 TCACACGTATGGATGTATCTAGATGTA 59.119 37.037 15.79 4.44 29.44 2.29
1287 2382 8.678199 CACACGTATGGATGTATCTAGATGTAT 58.322 37.037 15.79 9.11 29.44 2.29
1288 2383 9.244292 ACACGTATGGATGTATCTAGATGTATT 57.756 33.333 15.79 0.00 29.44 1.89
1314 2409 9.547753 TTTAGTTCTAGATACATCCATTTCAGC 57.452 33.333 0.00 0.00 0.00 4.26
1315 2410 6.219473 AGTTCTAGATACATCCATTTCAGCG 58.781 40.000 0.00 0.00 0.00 5.18
1316 2411 6.040955 AGTTCTAGATACATCCATTTCAGCGA 59.959 38.462 0.00 0.00 0.00 4.93
1317 2412 5.773575 TCTAGATACATCCATTTCAGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
1318 2413 3.384668 AGATACATCCATTTCAGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
1319 2414 2.951457 TACATCCATTTCAGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
1320 2415 1.645034 ACATCCATTTCAGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
1321 2416 1.066858 ACATCCATTTCAGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
1322 2417 2.165641 ACATCCATTTCAGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
1323 2418 3.186909 CATCCATTTCAGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
1324 2419 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
1325 2420 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
1326 2421 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
1327 2422 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
1328 2423 4.092821 CCATTTCAGCGACGAGTAATTTGA 59.907 41.667 0.00 0.00 0.00 2.69
1329 2424 5.390461 CCATTTCAGCGACGAGTAATTTGAA 60.390 40.000 0.00 0.00 0.00 2.69
1330 2425 5.660629 TTTCAGCGACGAGTAATTTGAAA 57.339 34.783 0.00 0.31 32.52 2.69
1331 2426 4.640805 TCAGCGACGAGTAATTTGAAAC 57.359 40.909 0.00 0.00 0.00 2.78
1332 2427 3.120616 TCAGCGACGAGTAATTTGAAACG 59.879 43.478 0.00 0.00 0.00 3.60
1333 2428 2.410730 AGCGACGAGTAATTTGAAACGG 59.589 45.455 0.00 0.00 0.00 4.44
1334 2429 2.409378 GCGACGAGTAATTTGAAACGGA 59.591 45.455 0.00 0.00 0.00 4.69
1335 2430 3.481467 GCGACGAGTAATTTGAAACGGAG 60.481 47.826 0.00 0.00 0.00 4.63
1336 2431 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
1337 2432 3.332034 ACGAGTAATTTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
1495 2667 3.767711 TGAGAAGGCTGTGAGAGAAGTA 58.232 45.455 0.00 0.00 0.00 2.24
1496 2668 3.508012 TGAGAAGGCTGTGAGAGAAGTAC 59.492 47.826 0.00 0.00 0.00 2.73
1497 2669 3.761752 GAGAAGGCTGTGAGAGAAGTACT 59.238 47.826 0.00 0.00 0.00 2.73
1530 2702 0.892358 CACCAGCCAGCAATGACTGT 60.892 55.000 0.00 0.00 35.83 3.55
1543 2715 5.536161 AGCAATGACTGTTGTTGATTTAGGT 59.464 36.000 9.40 0.00 0.00 3.08
1596 2768 1.815003 CTCCAAGGTGATCAAAGTGGC 59.185 52.381 12.79 0.00 0.00 5.01
1737 2909 5.882557 AGTCCATAACAGCAAGACATAAAGG 59.117 40.000 0.00 0.00 0.00 3.11
2002 3174 6.919721 TGAGGGAAACATTTACATTGCTAAC 58.080 36.000 0.00 0.00 0.00 2.34
2093 3265 2.100197 TGCGGTATGAAGAGCTAGTGT 58.900 47.619 0.00 0.00 0.00 3.55
2150 3322 7.545965 GGAGGAAATATGAGGACATATACAACG 59.454 40.741 0.00 0.00 45.48 4.10
2156 3328 3.065786 TGAGGACATATACAACGACGGAC 59.934 47.826 0.00 0.00 0.00 4.79
2256 3428 8.425577 AATTTATCACAACTATCGGAACTGAG 57.574 34.615 0.00 0.00 0.00 3.35
2314 3489 4.713321 TGTACCTAATAGGGTCTGGTGAAC 59.287 45.833 11.52 0.00 40.58 3.18
2407 3582 3.304391 GGCAAAGCGAGTTGTTCAATGTA 60.304 43.478 0.00 0.00 0.00 2.29
2428 3603 1.806542 AGCCACATCACATTGTTCGAC 59.193 47.619 0.00 0.00 0.00 4.20
2588 3763 8.186163 TCAATGAGATATTCAAGAAATGTGCAC 58.814 33.333 10.75 10.75 39.77 4.57
2645 3820 5.690464 AGGCAAGTATCTTCTCATCTGTT 57.310 39.130 0.00 0.00 0.00 3.16
2665 3840 8.391075 TCTGTTTGTCCCTAAAAAGAACATAG 57.609 34.615 0.00 0.00 32.41 2.23
2748 3928 6.181908 ACCGGGTATATTACACACAAACATT 58.818 36.000 6.32 0.00 30.72 2.71
3044 4241 8.890410 TCCTATTGGTACATACTATTAGGGTC 57.110 38.462 16.86 0.00 39.36 4.46
3045 4242 8.685311 TCCTATTGGTACATACTATTAGGGTCT 58.315 37.037 16.86 0.00 39.36 3.85
3047 4244 9.756571 CTATTGGTACATACTATTAGGGTCTCT 57.243 37.037 0.00 0.00 39.30 3.10
3049 4246 8.849543 TTGGTACATACTATTAGGGTCTCTTT 57.150 34.615 0.00 0.00 39.30 2.52
3050 4247 8.246430 TGGTACATACTATTAGGGTCTCTTTG 57.754 38.462 0.00 0.00 0.00 2.77
3051 4248 8.063153 TGGTACATACTATTAGGGTCTCTTTGA 58.937 37.037 0.00 0.00 0.00 2.69
3052 4249 9.091220 GGTACATACTATTAGGGTCTCTTTGAT 57.909 37.037 0.00 0.00 0.00 2.57
3055 4252 9.213777 ACATACTATTAGGGTCTCTTTGATTCA 57.786 33.333 0.00 0.00 0.00 2.57
3082 4279 9.705103 AAGGATTTTCATATGATCTTTGAAGGA 57.295 29.630 6.17 0.00 31.54 3.36
3083 4280 9.878737 AGGATTTTCATATGATCTTTGAAGGAT 57.121 29.630 6.17 0.00 31.54 3.24
3117 4314 5.190992 GGAATTTTTCCTACGTTGGTTGT 57.809 39.130 15.74 0.00 46.57 3.32
3118 4315 5.593968 GGAATTTTTCCTACGTTGGTTGTT 58.406 37.500 15.74 5.49 46.57 2.83
3119 4316 6.044046 GGAATTTTTCCTACGTTGGTTGTTT 58.956 36.000 15.74 5.09 46.57 2.83
3120 4317 6.019398 GGAATTTTTCCTACGTTGGTTGTTTG 60.019 38.462 15.74 0.00 46.57 2.93
3121 4318 5.640189 TTTTTCCTACGTTGGTTGTTTGA 57.360 34.783 15.74 0.00 0.00 2.69
3122 4319 5.838531 TTTTCCTACGTTGGTTGTTTGAT 57.161 34.783 15.74 0.00 0.00 2.57
3123 4320 5.838531 TTTCCTACGTTGGTTGTTTGATT 57.161 34.783 15.74 0.00 0.00 2.57
3124 4321 5.427036 TTCCTACGTTGGTTGTTTGATTC 57.573 39.130 15.74 0.00 0.00 2.52
3125 4322 3.495377 TCCTACGTTGGTTGTTTGATTCG 59.505 43.478 15.74 0.00 0.00 3.34
3126 4323 3.249080 CCTACGTTGGTTGTTTGATTCGT 59.751 43.478 7.97 0.00 0.00 3.85
3127 4324 4.448395 CCTACGTTGGTTGTTTGATTCGTA 59.552 41.667 7.97 0.00 0.00 3.43
3128 4325 4.461992 ACGTTGGTTGTTTGATTCGTAG 57.538 40.909 0.00 0.00 0.00 3.51
3129 4326 3.249080 ACGTTGGTTGTTTGATTCGTAGG 59.751 43.478 0.00 0.00 0.00 3.18
3130 4327 3.495377 CGTTGGTTGTTTGATTCGTAGGA 59.505 43.478 0.00 0.00 0.00 2.94
3131 4328 4.153475 CGTTGGTTGTTTGATTCGTAGGAT 59.847 41.667 0.00 0.00 0.00 3.24
3132 4329 5.334569 CGTTGGTTGTTTGATTCGTAGGATT 60.335 40.000 0.00 0.00 0.00 3.01
3133 4330 5.621197 TGGTTGTTTGATTCGTAGGATTG 57.379 39.130 0.00 0.00 0.00 2.67
3134 4331 5.309638 TGGTTGTTTGATTCGTAGGATTGA 58.690 37.500 0.00 0.00 0.00 2.57
3135 4332 5.765677 TGGTTGTTTGATTCGTAGGATTGAA 59.234 36.000 0.00 0.00 0.00 2.69
3136 4333 6.432783 TGGTTGTTTGATTCGTAGGATTGAAT 59.567 34.615 0.00 0.00 37.52 2.57
3137 4334 6.967199 GGTTGTTTGATTCGTAGGATTGAATC 59.033 38.462 7.76 7.76 46.77 2.52
3138 4335 7.148239 GGTTGTTTGATTCGTAGGATTGAATCT 60.148 37.037 14.01 0.00 46.73 2.40
3139 4336 7.921786 TGTTTGATTCGTAGGATTGAATCTT 57.078 32.000 14.01 0.00 46.73 2.40
3140 4337 7.751732 TGTTTGATTCGTAGGATTGAATCTTG 58.248 34.615 14.01 0.00 46.73 3.02
3141 4338 7.390440 TGTTTGATTCGTAGGATTGAATCTTGT 59.610 33.333 14.01 0.00 46.73 3.16
3142 4339 8.879759 GTTTGATTCGTAGGATTGAATCTTGTA 58.120 33.333 14.01 0.00 46.73 2.41
3143 4340 8.648557 TTGATTCGTAGGATTGAATCTTGTAG 57.351 34.615 14.01 0.00 46.73 2.74
3144 4341 7.210174 TGATTCGTAGGATTGAATCTTGTAGG 58.790 38.462 14.01 1.70 46.73 3.18
3145 4342 6.785337 TTCGTAGGATTGAATCTTGTAGGA 57.215 37.500 5.03 3.78 0.00 2.94
3146 4343 6.978674 TCGTAGGATTGAATCTTGTAGGAT 57.021 37.500 5.03 0.00 0.00 3.24
3147 4344 7.361457 TCGTAGGATTGAATCTTGTAGGATT 57.639 36.000 5.03 0.00 38.47 3.01
3148 4345 7.792032 TCGTAGGATTGAATCTTGTAGGATTT 58.208 34.615 5.03 0.00 36.24 2.17
3149 4346 8.265055 TCGTAGGATTGAATCTTGTAGGATTTT 58.735 33.333 5.03 0.00 36.24 1.82
3150 4347 8.893727 CGTAGGATTGAATCTTGTAGGATTTTT 58.106 33.333 5.03 0.00 36.24 1.94
3190 4387 9.575868 TTTGTACTACATTTTACAGGAATTCCA 57.424 29.630 26.22 4.77 38.89 3.53
3191 4388 9.575868 TTGTACTACATTTTACAGGAATTCCAA 57.424 29.630 26.22 11.66 38.89 3.53
3192 4389 9.005777 TGTACTACATTTTACAGGAATTCCAAC 57.994 33.333 26.22 0.00 38.89 3.77
3193 4390 9.005777 GTACTACATTTTACAGGAATTCCAACA 57.994 33.333 26.22 7.50 38.89 3.33
3194 4391 8.650143 ACTACATTTTACAGGAATTCCAACAT 57.350 30.769 26.22 7.91 38.89 2.71
3195 4392 8.739972 ACTACATTTTACAGGAATTCCAACATC 58.260 33.333 26.22 0.00 38.89 3.06
3196 4393 6.935167 ACATTTTACAGGAATTCCAACATCC 58.065 36.000 26.22 0.00 38.89 3.51
3197 4394 6.496565 ACATTTTACAGGAATTCCAACATCCA 59.503 34.615 26.22 5.06 38.89 3.41
3198 4395 5.975693 TTTACAGGAATTCCAACATCCAC 57.024 39.130 26.22 0.00 38.89 4.02
3199 4396 3.814504 ACAGGAATTCCAACATCCACT 57.185 42.857 26.22 0.00 38.89 4.00
3200 4397 3.690460 ACAGGAATTCCAACATCCACTC 58.310 45.455 26.22 0.00 38.89 3.51
3201 4398 3.019564 CAGGAATTCCAACATCCACTCC 58.980 50.000 26.22 0.00 38.89 3.85
3202 4399 2.649312 AGGAATTCCAACATCCACTCCA 59.351 45.455 26.22 0.00 38.89 3.86
3203 4400 3.075882 AGGAATTCCAACATCCACTCCAA 59.924 43.478 26.22 0.00 38.89 3.53
3204 4401 3.193479 GGAATTCCAACATCCACTCCAAC 59.807 47.826 20.04 0.00 35.64 3.77
3205 4402 2.286365 TTCCAACATCCACTCCAACC 57.714 50.000 0.00 0.00 0.00 3.77
3206 4403 1.444933 TCCAACATCCACTCCAACCT 58.555 50.000 0.00 0.00 0.00 3.50
3207 4404 1.351017 TCCAACATCCACTCCAACCTC 59.649 52.381 0.00 0.00 0.00 3.85
3208 4405 1.352352 CCAACATCCACTCCAACCTCT 59.648 52.381 0.00 0.00 0.00 3.69
3209 4406 2.224867 CCAACATCCACTCCAACCTCTT 60.225 50.000 0.00 0.00 0.00 2.85
3210 4407 2.816087 CAACATCCACTCCAACCTCTTG 59.184 50.000 0.00 0.00 0.00 3.02
3233 4430 4.988540 GGAAGAAATCCTTTGTTTTTCCCG 59.011 41.667 0.00 0.00 45.56 5.14
3234 4431 5.452776 GGAAGAAATCCTTTGTTTTTCCCGT 60.453 40.000 0.00 0.00 45.56 5.28
3235 4432 4.944048 AGAAATCCTTTGTTTTTCCCGTG 58.056 39.130 0.00 0.00 31.25 4.94
3236 4433 4.647399 AGAAATCCTTTGTTTTTCCCGTGA 59.353 37.500 0.00 0.00 31.25 4.35
3237 4434 4.316205 AATCCTTTGTTTTTCCCGTGAC 57.684 40.909 0.00 0.00 0.00 3.67
3238 4435 2.724454 TCCTTTGTTTTTCCCGTGACA 58.276 42.857 0.00 0.00 0.00 3.58
3239 4436 2.424246 TCCTTTGTTTTTCCCGTGACAC 59.576 45.455 0.00 0.00 0.00 3.67
3240 4437 2.164624 CCTTTGTTTTTCCCGTGACACA 59.835 45.455 6.37 0.00 0.00 3.72
3241 4438 3.367498 CCTTTGTTTTTCCCGTGACACAA 60.367 43.478 6.37 0.00 0.00 3.33
3242 4439 4.429108 CTTTGTTTTTCCCGTGACACAAT 58.571 39.130 6.37 0.00 0.00 2.71
3243 4440 3.701532 TGTTTTTCCCGTGACACAATC 57.298 42.857 6.37 0.00 0.00 2.67
3244 4441 3.017442 TGTTTTTCCCGTGACACAATCA 58.983 40.909 6.37 0.00 33.79 2.57
3245 4442 3.444034 TGTTTTTCCCGTGACACAATCAA 59.556 39.130 6.37 0.00 39.72 2.57
3246 4443 4.082190 TGTTTTTCCCGTGACACAATCAAA 60.082 37.500 6.37 0.00 39.72 2.69
3247 4444 3.701532 TTTCCCGTGACACAATCAAAC 57.298 42.857 6.37 0.00 39.72 2.93
3248 4445 2.333688 TCCCGTGACACAATCAAACA 57.666 45.000 6.37 0.00 39.72 2.83
3249 4446 2.644676 TCCCGTGACACAATCAAACAA 58.355 42.857 6.37 0.00 39.72 2.83
3250 4447 3.017442 TCCCGTGACACAATCAAACAAA 58.983 40.909 6.37 0.00 39.72 2.83
3251 4448 3.112580 CCCGTGACACAATCAAACAAAC 58.887 45.455 6.37 0.00 39.72 2.93
3252 4449 3.181491 CCCGTGACACAATCAAACAAACT 60.181 43.478 6.37 0.00 39.72 2.66
3253 4450 4.035017 CCGTGACACAATCAAACAAACTC 58.965 43.478 6.37 0.00 39.72 3.01
3254 4451 4.438065 CCGTGACACAATCAAACAAACTCA 60.438 41.667 6.37 0.00 39.72 3.41
3255 4452 5.092105 CGTGACACAATCAAACAAACTCAA 58.908 37.500 6.37 0.00 39.72 3.02
3256 4453 5.570973 CGTGACACAATCAAACAAACTCAAA 59.429 36.000 6.37 0.00 39.72 2.69
3257 4454 6.253298 CGTGACACAATCAAACAAACTCAAAT 59.747 34.615 6.37 0.00 39.72 2.32
3258 4455 7.513505 CGTGACACAATCAAACAAACTCAAATC 60.514 37.037 6.37 0.00 39.72 2.17
3259 4456 6.756074 TGACACAATCAAACAAACTCAAATCC 59.244 34.615 0.00 0.00 33.02 3.01
3260 4457 6.877236 ACACAATCAAACAAACTCAAATCCT 58.123 32.000 0.00 0.00 0.00 3.24
3261 4458 8.006298 ACACAATCAAACAAACTCAAATCCTA 57.994 30.769 0.00 0.00 0.00 2.94
3262 4459 8.641541 ACACAATCAAACAAACTCAAATCCTAT 58.358 29.630 0.00 0.00 0.00 2.57
3265 4462 9.793252 CAATCAAACAAACTCAAATCCTATAGG 57.207 33.333 13.07 13.07 0.00 2.57
3266 4463 7.938140 TCAAACAAACTCAAATCCTATAGGG 57.062 36.000 18.97 4.00 35.41 3.53
3278 4475 4.502036 TCCTATAGGGATCCAATGGACA 57.498 45.455 18.97 0.00 39.58 4.02
3279 4476 5.041695 TCCTATAGGGATCCAATGGACAT 57.958 43.478 18.97 0.00 39.58 3.06
3280 4477 4.784838 TCCTATAGGGATCCAATGGACATG 59.215 45.833 18.97 0.00 39.58 3.21
3281 4478 4.537688 CCTATAGGGATCCAATGGACATGT 59.462 45.833 15.23 0.00 37.23 3.21
3282 4479 4.647564 ATAGGGATCCAATGGACATGTC 57.352 45.455 17.91 17.91 32.98 3.06
3283 4480 2.207988 AGGGATCCAATGGACATGTCA 58.792 47.619 26.47 13.45 32.98 3.58
3284 4481 2.787625 AGGGATCCAATGGACATGTCAT 59.212 45.455 26.47 15.03 32.98 3.06
3285 4482 3.205959 AGGGATCCAATGGACATGTCATT 59.794 43.478 26.47 19.36 32.98 2.57
3286 4483 3.571401 GGGATCCAATGGACATGTCATTC 59.429 47.826 26.47 10.62 32.98 2.67
3287 4484 3.571401 GGATCCAATGGACATGTCATTCC 59.429 47.826 26.47 15.97 32.98 3.01
3288 4485 3.735720 TCCAATGGACATGTCATTCCA 57.264 42.857 26.47 16.53 46.06 3.53
3289 4486 4.044946 TCCAATGGACATGTCATTCCAA 57.955 40.909 26.47 5.70 45.14 3.53
3290 4487 4.612401 TCCAATGGACATGTCATTCCAAT 58.388 39.130 26.47 7.10 45.14 3.16
3291 4488 4.646040 TCCAATGGACATGTCATTCCAATC 59.354 41.667 26.47 7.76 45.14 2.67
3292 4489 4.202182 CCAATGGACATGTCATTCCAATCC 60.202 45.833 26.47 7.77 45.14 3.01
3293 4490 4.531357 ATGGACATGTCATTCCAATCCT 57.469 40.909 26.47 0.00 45.14 3.24
3294 4491 5.651612 ATGGACATGTCATTCCAATCCTA 57.348 39.130 26.47 0.00 45.14 2.94
3295 4492 4.780815 TGGACATGTCATTCCAATCCTAC 58.219 43.478 26.47 5.65 39.04 3.18
3296 4493 3.809832 GGACATGTCATTCCAATCCTACG 59.190 47.826 26.47 0.00 0.00 3.51
3297 4494 4.442706 GACATGTCATTCCAATCCTACGT 58.557 43.478 21.07 0.00 0.00 3.57
3298 4495 4.843728 ACATGTCATTCCAATCCTACGTT 58.156 39.130 0.00 0.00 0.00 3.99
3299 4496 5.253330 ACATGTCATTCCAATCCTACGTTT 58.747 37.500 0.00 0.00 0.00 3.60
3300 4497 5.710099 ACATGTCATTCCAATCCTACGTTTT 59.290 36.000 0.00 0.00 0.00 2.43
3301 4498 5.873179 TGTCATTCCAATCCTACGTTTTC 57.127 39.130 0.00 0.00 0.00 2.29
3302 4499 4.698304 TGTCATTCCAATCCTACGTTTTCC 59.302 41.667 0.00 0.00 0.00 3.13
3303 4500 4.095932 GTCATTCCAATCCTACGTTTTCCC 59.904 45.833 0.00 0.00 0.00 3.97
3304 4501 4.018779 TCATTCCAATCCTACGTTTTCCCT 60.019 41.667 0.00 0.00 0.00 4.20
3305 4502 5.190132 TCATTCCAATCCTACGTTTTCCCTA 59.810 40.000 0.00 0.00 0.00 3.53
3306 4503 5.703730 TTCCAATCCTACGTTTTCCCTAT 57.296 39.130 0.00 0.00 0.00 2.57
3307 4504 5.703730 TCCAATCCTACGTTTTCCCTATT 57.296 39.130 0.00 0.00 0.00 1.73
3308 4505 5.677567 TCCAATCCTACGTTTTCCCTATTC 58.322 41.667 0.00 0.00 0.00 1.75
3309 4506 4.820173 CCAATCCTACGTTTTCCCTATTCC 59.180 45.833 0.00 0.00 0.00 3.01
3310 4507 5.397559 CCAATCCTACGTTTTCCCTATTCCT 60.398 44.000 0.00 0.00 0.00 3.36
3311 4508 4.748277 TCCTACGTTTTCCCTATTCCTG 57.252 45.455 0.00 0.00 0.00 3.86
3312 4509 4.098894 TCCTACGTTTTCCCTATTCCTGT 58.901 43.478 0.00 0.00 0.00 4.00
3313 4510 4.081309 TCCTACGTTTTCCCTATTCCTGTG 60.081 45.833 0.00 0.00 0.00 3.66
3314 4511 3.782656 ACGTTTTCCCTATTCCTGTGT 57.217 42.857 0.00 0.00 0.00 3.72
3315 4512 4.094830 ACGTTTTCCCTATTCCTGTGTT 57.905 40.909 0.00 0.00 0.00 3.32
3316 4513 4.466827 ACGTTTTCCCTATTCCTGTGTTT 58.533 39.130 0.00 0.00 0.00 2.83
3317 4514 4.891168 ACGTTTTCCCTATTCCTGTGTTTT 59.109 37.500 0.00 0.00 0.00 2.43
3318 4515 5.361571 ACGTTTTCCCTATTCCTGTGTTTTT 59.638 36.000 0.00 0.00 0.00 1.94
3319 4516 5.689961 CGTTTTCCCTATTCCTGTGTTTTTG 59.310 40.000 0.00 0.00 0.00 2.44
3320 4517 4.864704 TTCCCTATTCCTGTGTTTTTGC 57.135 40.909 0.00 0.00 0.00 3.68
3321 4518 3.838565 TCCCTATTCCTGTGTTTTTGCA 58.161 40.909 0.00 0.00 0.00 4.08
3322 4519 4.219115 TCCCTATTCCTGTGTTTTTGCAA 58.781 39.130 0.00 0.00 0.00 4.08
3323 4520 4.837860 TCCCTATTCCTGTGTTTTTGCAAT 59.162 37.500 0.00 0.00 0.00 3.56
3324 4521 5.047377 TCCCTATTCCTGTGTTTTTGCAATC 60.047 40.000 0.00 0.00 0.00 2.67
3325 4522 5.170748 CCTATTCCTGTGTTTTTGCAATCC 58.829 41.667 0.00 0.00 0.00 3.01
3326 4523 4.961438 ATTCCTGTGTTTTTGCAATCCT 57.039 36.364 0.00 0.00 0.00 3.24
3327 4524 6.152661 CCTATTCCTGTGTTTTTGCAATCCTA 59.847 38.462 0.00 0.00 0.00 2.94
3328 4525 6.610075 ATTCCTGTGTTTTTGCAATCCTAT 57.390 33.333 0.00 0.00 0.00 2.57
3329 4526 5.389859 TCCTGTGTTTTTGCAATCCTATG 57.610 39.130 0.00 0.00 0.00 2.23
3330 4527 5.076182 TCCTGTGTTTTTGCAATCCTATGA 58.924 37.500 0.00 0.00 0.00 2.15
3331 4528 5.538053 TCCTGTGTTTTTGCAATCCTATGAA 59.462 36.000 0.00 0.00 0.00 2.57
3332 4529 6.211184 TCCTGTGTTTTTGCAATCCTATGAAT 59.789 34.615 0.00 0.00 0.00 2.57
3333 4530 6.532657 CCTGTGTTTTTGCAATCCTATGAATC 59.467 38.462 0.00 0.00 0.00 2.52
3334 4531 6.990798 TGTGTTTTTGCAATCCTATGAATCA 58.009 32.000 0.00 0.00 0.00 2.57
3335 4532 7.440198 TGTGTTTTTGCAATCCTATGAATCAA 58.560 30.769 0.00 0.00 0.00 2.57
3336 4533 7.930325 TGTGTTTTTGCAATCCTATGAATCAAA 59.070 29.630 0.00 0.00 0.00 2.69
3337 4534 8.437742 GTGTTTTTGCAATCCTATGAATCAAAG 58.562 33.333 0.00 0.00 0.00 2.77
3338 4535 8.366401 TGTTTTTGCAATCCTATGAATCAAAGA 58.634 29.630 0.00 0.00 0.00 2.52
3339 4536 8.866956 GTTTTTGCAATCCTATGAATCAAAGAG 58.133 33.333 0.00 0.00 0.00 2.85
3340 4537 6.704289 TTGCAATCCTATGAATCAAAGAGG 57.296 37.500 0.00 3.58 0.00 3.69
3341 4538 4.581824 TGCAATCCTATGAATCAAAGAGGC 59.418 41.667 4.80 3.46 0.00 4.70
3342 4539 4.022503 GCAATCCTATGAATCAAAGAGGCC 60.023 45.833 0.00 0.00 0.00 5.19
3343 4540 3.864789 TCCTATGAATCAAAGAGGCCC 57.135 47.619 0.00 0.00 0.00 5.80
3344 4541 3.397527 TCCTATGAATCAAAGAGGCCCT 58.602 45.455 0.00 0.00 0.00 5.19
3345 4542 3.788142 TCCTATGAATCAAAGAGGCCCTT 59.212 43.478 0.00 0.00 36.47 3.95
3346 4543 4.975147 TCCTATGAATCAAAGAGGCCCTTA 59.025 41.667 0.00 0.00 34.00 2.69
3347 4544 5.072329 TCCTATGAATCAAAGAGGCCCTTAG 59.928 44.000 0.00 0.00 34.00 2.18
3348 4545 5.072329 CCTATGAATCAAAGAGGCCCTTAGA 59.928 44.000 0.00 0.00 34.00 2.10
3349 4546 4.494091 TGAATCAAAGAGGCCCTTAGAG 57.506 45.455 0.00 0.00 34.00 2.43
3350 4547 3.846588 TGAATCAAAGAGGCCCTTAGAGT 59.153 43.478 0.00 0.00 34.00 3.24
3351 4548 3.922171 ATCAAAGAGGCCCTTAGAGTG 57.078 47.619 0.00 0.00 34.00 3.51
3352 4549 1.279271 TCAAAGAGGCCCTTAGAGTGC 59.721 52.381 0.00 0.00 34.00 4.40
3353 4550 0.621082 AAAGAGGCCCTTAGAGTGCC 59.379 55.000 0.00 0.00 45.70 5.01
3354 4551 1.275421 AAGAGGCCCTTAGAGTGCCC 61.275 60.000 0.00 0.00 46.55 5.36
3355 4552 1.995626 GAGGCCCTTAGAGTGCCCA 60.996 63.158 0.00 0.00 46.55 5.36
3356 4553 1.308216 AGGCCCTTAGAGTGCCCAT 60.308 57.895 0.00 0.00 46.55 4.00
3383 4580 5.971202 GTGTGTGTGTTTTTGAGAACATAGG 59.029 40.000 0.00 0.00 41.18 2.57
3384 4581 4.976116 GTGTGTGTTTTTGAGAACATAGGC 59.024 41.667 0.00 0.00 41.18 3.93
3385 4582 4.887071 TGTGTGTTTTTGAGAACATAGGCT 59.113 37.500 0.00 0.00 41.18 4.58
3388 4585 5.239306 TGTGTTTTTGAGAACATAGGCTGAG 59.761 40.000 0.00 0.00 41.18 3.35
3389 4586 5.470098 GTGTTTTTGAGAACATAGGCTGAGA 59.530 40.000 0.00 0.00 41.18 3.27
3390 4587 6.017109 GTGTTTTTGAGAACATAGGCTGAGAA 60.017 38.462 0.00 0.00 41.18 2.87
3392 4589 3.510388 TGAGAACATAGGCTGAGAACG 57.490 47.619 0.00 0.00 0.00 3.95
3416 5068 2.099431 GCTGCAGGCTGAGAACGAG 61.099 63.158 20.86 4.35 38.06 4.18
3438 5092 6.454223 AGGCCATAGCTTTCTTTATCCATA 57.546 37.500 5.01 0.00 39.73 2.74
3476 5130 3.490439 TGAGCCATCAGTTTCTTGACA 57.510 42.857 0.00 0.00 0.00 3.58
3498 5152 4.618920 ATTACTTGGTTGTCCGTCTCTT 57.381 40.909 0.00 0.00 36.30 2.85
3501 5155 3.228453 ACTTGGTTGTCCGTCTCTTAGA 58.772 45.455 0.00 0.00 36.30 2.10
3559 5213 6.785488 TGTACAGAAACAGATTGTGACATC 57.215 37.500 0.00 0.00 35.89 3.06
3597 5252 9.296400 TGTCCTATTTCTTTTTCTTTTGAAACG 57.704 29.630 0.00 0.00 46.80 3.60
3622 5277 4.882671 ATGTTGTCCTATTTCGATGTGC 57.117 40.909 0.00 0.00 0.00 4.57
3627 5282 3.270877 GTCCTATTTCGATGTGCTGGTT 58.729 45.455 0.00 0.00 0.00 3.67
3628 5283 3.063997 GTCCTATTTCGATGTGCTGGTTG 59.936 47.826 0.00 0.00 0.00 3.77
3666 5328 1.526887 CACTGACGTCCAACATGTGTC 59.473 52.381 14.12 2.41 0.00 3.67
3702 5364 6.741992 TTCACAAGGTATCAAAGTAGCATG 57.258 37.500 0.00 0.00 0.00 4.06
3737 5400 2.275380 GGCTTCGGGGCATGTGTTT 61.275 57.895 0.00 0.00 40.53 2.83
3775 5438 3.445805 TGGTCCACTCCAACAAAAGTTTC 59.554 43.478 0.00 0.00 34.24 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.451393 TGTTCCGTTTTATTGCTATTGCTTT 58.549 32.000 0.00 0.00 40.48 3.51
24 25 7.072030 CGTTAGCTTAGCATATTGATTGTTCC 58.928 38.462 7.07 0.00 0.00 3.62
29 30 6.372659 CCATCCGTTAGCTTAGCATATTGATT 59.627 38.462 7.07 0.00 0.00 2.57
56 57 3.819337 GGAGAATGATGTGATGGACATGG 59.181 47.826 0.00 0.00 45.90 3.66
94 95 6.186957 TCCTAGCCATAAACATGTGTTGAAT 58.813 36.000 0.00 0.00 38.44 2.57
107 118 7.266905 AGAAGGTTAAGTTTCCTAGCCATAA 57.733 36.000 0.70 0.00 33.27 1.90
163 174 1.932511 GACAAAACACCGTGTCCGTAA 59.067 47.619 4.23 0.00 38.57 3.18
166 177 1.855513 TAGACAAAACACCGTGTCCG 58.144 50.000 4.23 0.00 44.30 4.79
296 307 2.365582 GTGGCGGTGAAGGAAATATGT 58.634 47.619 0.00 0.00 0.00 2.29
328 339 3.851845 TTCGTCTGGTGGCGGTTCG 62.852 63.158 0.00 0.00 0.00 3.95
340 351 2.126071 CGGCGGTGATGTTCGTCT 60.126 61.111 0.00 0.00 0.00 4.18
428 439 3.917760 GGTCGCCCTCGGATCTGG 61.918 72.222 0.62 0.00 36.13 3.86
431 442 2.340443 GATGGTCGCCCTCGGATC 59.660 66.667 0.00 0.00 36.13 3.36
519 535 4.179599 CCCTCTCCCCTCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
520 536 4.179599 CCCCTCTCCCCTCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
577 593 3.541713 CTAGCCCCCTCCTGTCGC 61.542 72.222 0.00 0.00 0.00 5.19
578 594 2.042843 ACTAGCCCCCTCCTGTCG 60.043 66.667 0.00 0.00 0.00 4.35
580 596 1.613630 CACACTAGCCCCCTCCTGT 60.614 63.158 0.00 0.00 0.00 4.00
582 598 2.689034 GCACACTAGCCCCCTCCT 60.689 66.667 0.00 0.00 0.00 3.69
643 659 0.898326 AATGAAACAACCCCTCCCGC 60.898 55.000 0.00 0.00 0.00 6.13
882 900 1.688197 CACACAAAATGAGTGGCCCTT 59.312 47.619 0.00 0.00 41.21 3.95
973 2056 3.421844 AGATTGCCCAAGAAGTGTTACC 58.578 45.455 0.00 0.00 0.00 2.85
976 2059 5.357742 AAAAAGATTGCCCAAGAAGTGTT 57.642 34.783 0.00 0.00 0.00 3.32
1244 2339 7.808583 ATACGTGTGACAAGTAATTCGGAACG 61.809 42.308 14.83 0.00 41.59 3.95
1245 2340 3.492011 ACGTGTGACAAGTAATTCGGAAC 59.508 43.478 1.47 0.00 0.00 3.62
1246 2341 3.719924 ACGTGTGACAAGTAATTCGGAA 58.280 40.909 1.47 0.00 0.00 4.30
1247 2342 3.374220 ACGTGTGACAAGTAATTCGGA 57.626 42.857 1.47 0.00 0.00 4.55
1248 2343 4.032445 CCATACGTGTGACAAGTAATTCGG 59.968 45.833 14.83 9.59 32.82 4.30
1249 2344 4.860352 TCCATACGTGTGACAAGTAATTCG 59.140 41.667 14.83 1.83 32.82 3.34
1250 2345 6.312918 ACATCCATACGTGTGACAAGTAATTC 59.687 38.462 14.83 0.00 32.82 2.17
1251 2346 6.170506 ACATCCATACGTGTGACAAGTAATT 58.829 36.000 14.83 0.00 32.82 1.40
1252 2347 5.730550 ACATCCATACGTGTGACAAGTAAT 58.269 37.500 14.83 2.47 32.82 1.89
1253 2348 5.142061 ACATCCATACGTGTGACAAGTAA 57.858 39.130 14.83 0.12 32.82 2.24
1254 2349 4.794278 ACATCCATACGTGTGACAAGTA 57.206 40.909 14.51 13.38 33.49 2.24
1255 2350 3.678056 ACATCCATACGTGTGACAAGT 57.322 42.857 14.51 9.43 0.00 3.16
1256 2351 5.592054 AGATACATCCATACGTGTGACAAG 58.408 41.667 14.51 0.00 0.00 3.16
1257 2352 5.592104 AGATACATCCATACGTGTGACAA 57.408 39.130 14.51 0.00 0.00 3.18
1258 2353 6.059484 TCTAGATACATCCATACGTGTGACA 58.941 40.000 14.51 0.00 0.00 3.58
1259 2354 6.555812 TCTAGATACATCCATACGTGTGAC 57.444 41.667 14.51 0.00 0.00 3.67
1260 2355 6.715264 ACATCTAGATACATCCATACGTGTGA 59.285 38.462 14.51 0.00 0.00 3.58
1261 2356 6.914259 ACATCTAGATACATCCATACGTGTG 58.086 40.000 4.54 5.16 0.00 3.82
1262 2357 8.809468 ATACATCTAGATACATCCATACGTGT 57.191 34.615 4.54 0.00 0.00 4.49
1288 2383 9.547753 GCTGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
1289 2384 7.867909 CGCTGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
1290 2385 7.230712 TCGCTGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
1291 2386 6.040955 TCGCTGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
1292 2387 6.144724 GTCGCTGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 0.00 3.01
1293 2388 6.216569 GTCGCTGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 0.00 2.10
1294 2389 5.562890 CGTCGCTGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 0.00 2.43
1295 2390 4.618912 CGTCGCTGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 0.00 2.43
1296 2391 4.277423 TCGTCGCTGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 0.00 1.98
1297 2392 3.068165 TCGTCGCTGAAATGGATGTATCT 59.932 43.478 0.00 0.00 0.00 1.98
1298 2393 3.381045 TCGTCGCTGAAATGGATGTATC 58.619 45.455 0.00 0.00 0.00 2.24
1299 2394 3.181475 ACTCGTCGCTGAAATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
1300 2395 2.165641 ACTCGTCGCTGAAATGGATGTA 59.834 45.455 0.00 0.00 0.00 2.29
1301 2396 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
1302 2397 1.645034 ACTCGTCGCTGAAATGGATG 58.355 50.000 0.00 0.00 0.00 3.51
1303 2398 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
1304 2399 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
1305 2400 4.092821 TCAAATTACTCGTCGCTGAAATGG 59.907 41.667 0.00 0.00 0.00 3.16
1306 2401 5.203358 TCAAATTACTCGTCGCTGAAATG 57.797 39.130 0.00 0.00 0.00 2.32
1307 2402 5.856126 TTCAAATTACTCGTCGCTGAAAT 57.144 34.783 0.00 0.00 0.00 2.17
1308 2403 5.437263 GTTTCAAATTACTCGTCGCTGAAA 58.563 37.500 0.00 0.00 0.00 2.69
1309 2404 4.375606 CGTTTCAAATTACTCGTCGCTGAA 60.376 41.667 0.00 0.00 0.00 3.02
1310 2405 3.120616 CGTTTCAAATTACTCGTCGCTGA 59.879 43.478 0.00 0.00 0.00 4.26
1311 2406 3.395671 CGTTTCAAATTACTCGTCGCTG 58.604 45.455 0.00 0.00 0.00 5.18
1312 2407 2.410730 CCGTTTCAAATTACTCGTCGCT 59.589 45.455 0.00 0.00 0.00 4.93
1313 2408 2.409378 TCCGTTTCAAATTACTCGTCGC 59.591 45.455 0.00 0.00 0.00 5.19
1314 2409 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
1315 2410 3.370061 CCCTCCGTTTCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
1316 2411 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
1317 2412 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
1318 2413 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
1319 2414 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
1320 2415 5.485620 ACTACTCCCTCCGTTTCAAATTAC 58.514 41.667 0.00 0.00 0.00 1.89
1321 2416 5.750352 ACTACTCCCTCCGTTTCAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
1322 2417 4.635699 ACTACTCCCTCCGTTTCAAATT 57.364 40.909 0.00 0.00 0.00 1.82
1323 2418 5.952347 ATACTACTCCCTCCGTTTCAAAT 57.048 39.130 0.00 0.00 0.00 2.32
1324 2419 5.750352 AATACTACTCCCTCCGTTTCAAA 57.250 39.130 0.00 0.00 0.00 2.69
1325 2420 5.750352 AAATACTACTCCCTCCGTTTCAA 57.250 39.130 0.00 0.00 0.00 2.69
1326 2421 6.855763 TTAAATACTACTCCCTCCGTTTCA 57.144 37.500 0.00 0.00 0.00 2.69
1327 2422 7.326454 AGTTTAAATACTACTCCCTCCGTTTC 58.674 38.462 0.00 0.00 0.00 2.78
1328 2423 7.179872 AGAGTTTAAATACTACTCCCTCCGTTT 59.820 37.037 0.00 0.00 39.23 3.60
1329 2424 6.666980 AGAGTTTAAATACTACTCCCTCCGTT 59.333 38.462 0.00 0.00 39.23 4.44
1330 2425 6.193504 AGAGTTTAAATACTACTCCCTCCGT 58.806 40.000 0.00 0.00 39.23 4.69
1331 2426 6.238981 GGAGAGTTTAAATACTACTCCCTCCG 60.239 46.154 0.00 0.00 39.23 4.63
1332 2427 6.238981 CGGAGAGTTTAAATACTACTCCCTCC 60.239 46.154 16.01 0.00 39.23 4.30
1333 2428 6.320926 ACGGAGAGTTTAAATACTACTCCCTC 59.679 42.308 16.01 6.23 39.23 4.30
1334 2429 6.193504 ACGGAGAGTTTAAATACTACTCCCT 58.806 40.000 16.01 8.07 39.23 4.20
1335 2430 6.462552 ACGGAGAGTTTAAATACTACTCCC 57.537 41.667 16.01 10.17 39.23 4.30
1336 2431 6.255237 GCAACGGAGAGTTTAAATACTACTCC 59.745 42.308 0.00 0.00 42.02 3.85
1337 2432 6.810182 TGCAACGGAGAGTTTAAATACTACTC 59.190 38.462 0.00 0.00 42.02 2.59
1530 2702 5.241506 CCAGAAGAGCAACCTAAATCAACAA 59.758 40.000 0.00 0.00 0.00 2.83
1543 2715 2.170397 TGTGTTCTGACCAGAAGAGCAA 59.830 45.455 12.28 0.00 46.93 3.91
1596 2768 2.602257 TTCGTCACTATCATGGCCTG 57.398 50.000 3.32 0.00 0.00 4.85
1645 2817 7.443302 TCCTGGTAGATCATTGAGAAAGAAT 57.557 36.000 0.00 0.00 0.00 2.40
1737 2909 5.246307 AGAAAGGTGGTAGCAGTGTATTTC 58.754 41.667 0.00 2.47 0.00 2.17
2002 3174 1.301716 AACACCTGCTGGCGTAGTG 60.302 57.895 9.95 2.57 36.63 2.74
2093 3265 1.449353 GCACCATTTGCCCACCAAA 59.551 52.632 0.00 0.00 46.63 3.28
2150 3322 1.207089 TGGATGGTTCAGATGTCCGTC 59.793 52.381 9.07 9.07 36.76 4.79
2156 3328 1.496001 TCCCCATGGATGGTTCAGATG 59.504 52.381 15.22 0.00 46.65 2.90
2237 3409 4.866508 AACTCAGTTCCGATAGTTGTGA 57.133 40.909 0.00 0.00 31.20 3.58
2300 3475 4.781775 TTTCTTTGTTCACCAGACCCTA 57.218 40.909 0.00 0.00 0.00 3.53
2314 3489 3.809832 TGAAGGAGTCGAGCTTTTCTTTG 59.190 43.478 0.00 0.00 0.00 2.77
2407 3582 2.226437 GTCGAACAATGTGATGTGGCTT 59.774 45.455 0.00 0.00 32.81 4.35
2418 3593 1.806542 CCCAGTTGGAGTCGAACAATG 59.193 52.381 18.70 9.82 37.39 2.82
2588 3763 0.532573 AGGTGCTCCGTGACATAGTG 59.467 55.000 0.00 0.00 39.05 2.74
2645 3820 6.303839 ACTGCTATGTTCTTTTTAGGGACAA 58.696 36.000 0.00 0.00 0.00 3.18
2748 3928 8.895737 AGTGTGTACCGAAGAAAAGAAAATTAA 58.104 29.630 0.00 0.00 0.00 1.40
2833 4018 3.790126 AGACAAAGGGGCATGGTATTTT 58.210 40.909 0.00 0.00 0.00 1.82
3056 4253 9.705103 TCCTTCAAAGATCATATGAAAATCCTT 57.295 29.630 9.99 5.82 33.08 3.36
3057 4254 9.878737 ATCCTTCAAAGATCATATGAAAATCCT 57.121 29.630 9.99 0.00 33.08 3.24
3096 4293 6.752815 TCAAACAACCAACGTAGGAAAAATTC 59.247 34.615 0.00 0.00 0.00 2.17
3097 4294 6.631962 TCAAACAACCAACGTAGGAAAAATT 58.368 32.000 0.00 0.00 0.00 1.82
3098 4295 6.210287 TCAAACAACCAACGTAGGAAAAAT 57.790 33.333 0.00 0.00 0.00 1.82
3099 4296 5.640189 TCAAACAACCAACGTAGGAAAAA 57.360 34.783 0.00 0.00 0.00 1.94
3100 4297 5.838531 ATCAAACAACCAACGTAGGAAAA 57.161 34.783 0.00 0.00 0.00 2.29
3101 4298 5.504337 CGAATCAAACAACCAACGTAGGAAA 60.504 40.000 0.00 0.00 0.00 3.13
3102 4299 4.024725 CGAATCAAACAACCAACGTAGGAA 60.025 41.667 0.00 0.00 0.00 3.36
3103 4300 3.495377 CGAATCAAACAACCAACGTAGGA 59.505 43.478 0.00 0.00 0.00 2.94
3104 4301 3.249080 ACGAATCAAACAACCAACGTAGG 59.751 43.478 0.00 0.00 0.00 3.18
3105 4302 4.461992 ACGAATCAAACAACCAACGTAG 57.538 40.909 0.00 0.00 0.00 3.51
3106 4303 4.448395 CCTACGAATCAAACAACCAACGTA 59.552 41.667 0.00 0.00 34.70 3.57
3107 4304 3.249080 CCTACGAATCAAACAACCAACGT 59.751 43.478 0.00 0.00 36.71 3.99
3108 4305 3.495377 TCCTACGAATCAAACAACCAACG 59.505 43.478 0.00 0.00 0.00 4.10
3109 4306 5.622770 ATCCTACGAATCAAACAACCAAC 57.377 39.130 0.00 0.00 0.00 3.77
3110 4307 5.765677 TCAATCCTACGAATCAAACAACCAA 59.234 36.000 0.00 0.00 0.00 3.67
3111 4308 5.309638 TCAATCCTACGAATCAAACAACCA 58.690 37.500 0.00 0.00 0.00 3.67
3112 4309 5.873179 TCAATCCTACGAATCAAACAACC 57.127 39.130 0.00 0.00 0.00 3.77
3113 4310 7.752695 AGATTCAATCCTACGAATCAAACAAC 58.247 34.615 13.03 0.00 46.52 3.32
3114 4311 7.921786 AGATTCAATCCTACGAATCAAACAA 57.078 32.000 13.03 0.00 46.52 2.83
3115 4312 7.390440 ACAAGATTCAATCCTACGAATCAAACA 59.610 33.333 13.03 0.00 46.52 2.83
3116 4313 7.752695 ACAAGATTCAATCCTACGAATCAAAC 58.247 34.615 13.03 0.00 46.52 2.93
3117 4314 7.921786 ACAAGATTCAATCCTACGAATCAAA 57.078 32.000 13.03 0.00 46.52 2.69
3118 4315 7.710907 CCTACAAGATTCAATCCTACGAATCAA 59.289 37.037 13.03 0.00 46.52 2.57
3119 4316 7.069455 TCCTACAAGATTCAATCCTACGAATCA 59.931 37.037 13.03 0.00 46.52 2.57
3120 4317 7.434492 TCCTACAAGATTCAATCCTACGAATC 58.566 38.462 0.00 0.00 45.15 2.52
3121 4318 7.361457 TCCTACAAGATTCAATCCTACGAAT 57.639 36.000 0.00 0.00 34.58 3.34
3122 4319 6.785337 TCCTACAAGATTCAATCCTACGAA 57.215 37.500 0.00 0.00 0.00 3.85
3123 4320 6.978674 ATCCTACAAGATTCAATCCTACGA 57.021 37.500 0.00 0.00 0.00 3.43
3124 4321 8.438676 AAAATCCTACAAGATTCAATCCTACG 57.561 34.615 0.00 0.00 35.40 3.51
3164 4361 9.575868 TGGAATTCCTGTAAAATGTAGTACAAA 57.424 29.630 24.73 0.00 36.82 2.83
3165 4362 9.575868 TTGGAATTCCTGTAAAATGTAGTACAA 57.424 29.630 24.73 2.20 36.82 2.41
3166 4363 9.005777 GTTGGAATTCCTGTAAAATGTAGTACA 57.994 33.333 24.73 5.24 36.82 2.90
3167 4364 9.005777 TGTTGGAATTCCTGTAAAATGTAGTAC 57.994 33.333 24.73 0.00 36.82 2.73
3168 4365 9.747898 ATGTTGGAATTCCTGTAAAATGTAGTA 57.252 29.630 24.73 0.00 36.82 1.82
3169 4366 8.650143 ATGTTGGAATTCCTGTAAAATGTAGT 57.350 30.769 24.73 0.00 36.82 2.73
3170 4367 8.190784 GGATGTTGGAATTCCTGTAAAATGTAG 58.809 37.037 24.73 0.00 36.82 2.74
3171 4368 7.671819 TGGATGTTGGAATTCCTGTAAAATGTA 59.328 33.333 24.73 0.00 36.82 2.29
3172 4369 6.496565 TGGATGTTGGAATTCCTGTAAAATGT 59.503 34.615 24.73 4.11 36.82 2.71
3173 4370 6.813152 GTGGATGTTGGAATTCCTGTAAAATG 59.187 38.462 24.73 0.00 36.82 2.32
3174 4371 6.725834 AGTGGATGTTGGAATTCCTGTAAAAT 59.274 34.615 24.73 11.67 36.82 1.82
3175 4372 6.074648 AGTGGATGTTGGAATTCCTGTAAAA 58.925 36.000 24.73 8.02 36.82 1.52
3176 4373 5.640147 AGTGGATGTTGGAATTCCTGTAAA 58.360 37.500 24.73 8.40 36.82 2.01
3177 4374 5.253330 GAGTGGATGTTGGAATTCCTGTAA 58.747 41.667 24.73 8.77 36.82 2.41
3178 4375 4.324254 GGAGTGGATGTTGGAATTCCTGTA 60.324 45.833 24.73 11.21 36.82 2.74
3179 4376 3.562176 GGAGTGGATGTTGGAATTCCTGT 60.562 47.826 24.73 8.42 36.82 4.00
3180 4377 3.019564 GGAGTGGATGTTGGAATTCCTG 58.980 50.000 24.73 0.00 36.82 3.86
3181 4378 2.649312 TGGAGTGGATGTTGGAATTCCT 59.351 45.455 24.73 4.76 36.82 3.36
3182 4379 3.085952 TGGAGTGGATGTTGGAATTCC 57.914 47.619 18.17 18.17 0.00 3.01
3183 4380 3.193479 GGTTGGAGTGGATGTTGGAATTC 59.807 47.826 0.00 0.00 0.00 2.17
3184 4381 3.165071 GGTTGGAGTGGATGTTGGAATT 58.835 45.455 0.00 0.00 0.00 2.17
3185 4382 2.379907 AGGTTGGAGTGGATGTTGGAAT 59.620 45.455 0.00 0.00 0.00 3.01
3186 4383 1.780309 AGGTTGGAGTGGATGTTGGAA 59.220 47.619 0.00 0.00 0.00 3.53
3187 4384 1.351017 GAGGTTGGAGTGGATGTTGGA 59.649 52.381 0.00 0.00 0.00 3.53
3188 4385 1.352352 AGAGGTTGGAGTGGATGTTGG 59.648 52.381 0.00 0.00 0.00 3.77
3189 4386 2.816087 CAAGAGGTTGGAGTGGATGTTG 59.184 50.000 0.00 0.00 0.00 3.33
3190 4387 3.146104 CAAGAGGTTGGAGTGGATGTT 57.854 47.619 0.00 0.00 0.00 2.71
3191 4388 2.867109 CAAGAGGTTGGAGTGGATGT 57.133 50.000 0.00 0.00 0.00 3.06
3200 4397 5.279156 CAAAGGATTTCTTCCAAGAGGTTGG 60.279 44.000 0.00 0.00 45.96 3.77
3210 4407 4.988540 CGGGAAAAACAAAGGATTTCTTCC 59.011 41.667 0.00 0.00 45.85 3.46
3211 4408 5.462068 CACGGGAAAAACAAAGGATTTCTTC 59.538 40.000 0.00 0.00 35.03 2.87
3212 4409 5.128008 TCACGGGAAAAACAAAGGATTTCTT 59.872 36.000 0.00 0.00 35.03 2.52
3213 4410 4.647399 TCACGGGAAAAACAAAGGATTTCT 59.353 37.500 0.00 0.00 35.03 2.52
3214 4411 4.743151 GTCACGGGAAAAACAAAGGATTTC 59.257 41.667 0.00 0.00 35.03 2.17
3215 4412 4.160626 TGTCACGGGAAAAACAAAGGATTT 59.839 37.500 0.00 0.00 40.26 2.17
3216 4413 3.702045 TGTCACGGGAAAAACAAAGGATT 59.298 39.130 0.00 0.00 0.00 3.01
3217 4414 3.067601 GTGTCACGGGAAAAACAAAGGAT 59.932 43.478 0.00 0.00 0.00 3.24
3218 4415 2.424246 GTGTCACGGGAAAAACAAAGGA 59.576 45.455 0.00 0.00 0.00 3.36
3219 4416 2.164624 TGTGTCACGGGAAAAACAAAGG 59.835 45.455 0.00 0.00 0.00 3.11
3220 4417 3.495670 TGTGTCACGGGAAAAACAAAG 57.504 42.857 0.00 0.00 0.00 2.77
3221 4418 3.936372 TTGTGTCACGGGAAAAACAAA 57.064 38.095 8.85 0.00 0.00 2.83
3222 4419 3.444034 TGATTGTGTCACGGGAAAAACAA 59.556 39.130 12.58 12.58 31.63 2.83
3223 4420 3.017442 TGATTGTGTCACGGGAAAAACA 58.983 40.909 0.00 0.00 0.00 2.83
3224 4421 3.701532 TGATTGTGTCACGGGAAAAAC 57.298 42.857 0.00 0.00 0.00 2.43
3225 4422 4.082190 TGTTTGATTGTGTCACGGGAAAAA 60.082 37.500 0.00 0.00 36.32 1.94
3226 4423 3.444034 TGTTTGATTGTGTCACGGGAAAA 59.556 39.130 0.00 0.00 36.32 2.29
3227 4424 3.017442 TGTTTGATTGTGTCACGGGAAA 58.983 40.909 0.00 0.00 36.32 3.13
3228 4425 2.644676 TGTTTGATTGTGTCACGGGAA 58.355 42.857 0.00 0.00 36.32 3.97
3229 4426 2.333688 TGTTTGATTGTGTCACGGGA 57.666 45.000 0.00 0.00 36.32 5.14
3230 4427 3.112580 GTTTGTTTGATTGTGTCACGGG 58.887 45.455 0.00 0.00 36.32 5.28
3231 4428 4.027572 AGTTTGTTTGATTGTGTCACGG 57.972 40.909 0.00 0.00 36.32 4.94
3232 4429 4.657055 TGAGTTTGTTTGATTGTGTCACG 58.343 39.130 0.00 0.00 36.32 4.35
3233 4430 6.942886 TTTGAGTTTGTTTGATTGTGTCAC 57.057 33.333 0.00 0.00 36.32 3.67
3234 4431 6.756074 GGATTTGAGTTTGTTTGATTGTGTCA 59.244 34.615 0.00 0.00 34.25 3.58
3235 4432 6.980397 AGGATTTGAGTTTGTTTGATTGTGTC 59.020 34.615 0.00 0.00 0.00 3.67
3236 4433 6.877236 AGGATTTGAGTTTGTTTGATTGTGT 58.123 32.000 0.00 0.00 0.00 3.72
3239 4436 9.793252 CCTATAGGATTTGAGTTTGTTTGATTG 57.207 33.333 14.11 0.00 37.39 2.67
3240 4437 8.971073 CCCTATAGGATTTGAGTTTGTTTGATT 58.029 33.333 21.07 0.00 38.24 2.57
3241 4438 8.336235 TCCCTATAGGATTTGAGTTTGTTTGAT 58.664 33.333 21.07 0.00 40.93 2.57
3242 4439 7.695055 TCCCTATAGGATTTGAGTTTGTTTGA 58.305 34.615 21.07 0.00 40.93 2.69
3243 4440 7.938140 TCCCTATAGGATTTGAGTTTGTTTG 57.062 36.000 21.07 0.00 40.93 2.93
3258 4455 4.537688 ACATGTCCATTGGATCCCTATAGG 59.462 45.833 12.27 12.27 32.73 2.57
3259 4456 5.249163 TGACATGTCCATTGGATCCCTATAG 59.751 44.000 22.85 0.00 32.73 1.31
3260 4457 5.161886 TGACATGTCCATTGGATCCCTATA 58.838 41.667 22.85 0.00 32.73 1.31
3261 4458 3.982730 TGACATGTCCATTGGATCCCTAT 59.017 43.478 22.85 0.00 32.73 2.57
3262 4459 3.392730 TGACATGTCCATTGGATCCCTA 58.607 45.455 22.85 0.00 32.73 3.53
3263 4460 2.207988 TGACATGTCCATTGGATCCCT 58.792 47.619 22.85 0.00 32.73 4.20
3264 4461 2.734755 TGACATGTCCATTGGATCCC 57.265 50.000 22.85 0.00 32.73 3.85
3265 4462 3.571401 GGAATGACATGTCCATTGGATCC 59.429 47.826 22.85 14.39 34.67 3.36
3266 4463 4.209538 TGGAATGACATGTCCATTGGATC 58.790 43.478 22.85 10.14 39.04 3.36
3267 4464 4.254039 TGGAATGACATGTCCATTGGAT 57.746 40.909 22.85 5.85 39.04 3.41
3268 4465 3.735720 TGGAATGACATGTCCATTGGA 57.264 42.857 22.85 0.00 39.04 3.53
3269 4466 4.202182 GGATTGGAATGACATGTCCATTGG 60.202 45.833 22.85 0.00 43.42 3.16
3270 4467 4.647853 AGGATTGGAATGACATGTCCATTG 59.352 41.667 22.85 0.00 43.42 2.82
3271 4468 4.875389 AGGATTGGAATGACATGTCCATT 58.125 39.130 22.85 19.85 43.42 3.16
3272 4469 4.531357 AGGATTGGAATGACATGTCCAT 57.469 40.909 22.85 11.59 43.42 3.41
3273 4470 4.683129 CGTAGGATTGGAATGACATGTCCA 60.683 45.833 22.85 11.54 42.27 4.02
3274 4471 3.809832 CGTAGGATTGGAATGACATGTCC 59.190 47.826 22.85 8.85 0.00 4.02
3275 4472 4.442706 ACGTAGGATTGGAATGACATGTC 58.557 43.478 19.27 19.27 0.00 3.06
3276 4473 4.487714 ACGTAGGATTGGAATGACATGT 57.512 40.909 0.00 0.00 0.00 3.21
3277 4474 5.818136 AAACGTAGGATTGGAATGACATG 57.182 39.130 0.00 0.00 0.00 3.21
3278 4475 5.357032 GGAAAACGTAGGATTGGAATGACAT 59.643 40.000 0.00 0.00 0.00 3.06
3279 4476 4.698304 GGAAAACGTAGGATTGGAATGACA 59.302 41.667 0.00 0.00 0.00 3.58
3280 4477 4.095932 GGGAAAACGTAGGATTGGAATGAC 59.904 45.833 0.00 0.00 0.00 3.06
3281 4478 4.018779 AGGGAAAACGTAGGATTGGAATGA 60.019 41.667 0.00 0.00 0.00 2.57
3282 4479 4.270008 AGGGAAAACGTAGGATTGGAATG 58.730 43.478 0.00 0.00 0.00 2.67
3283 4480 4.586306 AGGGAAAACGTAGGATTGGAAT 57.414 40.909 0.00 0.00 0.00 3.01
3284 4481 5.703730 ATAGGGAAAACGTAGGATTGGAA 57.296 39.130 0.00 0.00 0.00 3.53
3285 4482 5.397109 GGAATAGGGAAAACGTAGGATTGGA 60.397 44.000 0.00 0.00 0.00 3.53
3286 4483 4.820173 GGAATAGGGAAAACGTAGGATTGG 59.180 45.833 0.00 0.00 0.00 3.16
3287 4484 5.527582 CAGGAATAGGGAAAACGTAGGATTG 59.472 44.000 0.00 0.00 0.00 2.67
3288 4485 5.191124 ACAGGAATAGGGAAAACGTAGGATT 59.809 40.000 0.00 0.00 0.00 3.01
3289 4486 4.720273 ACAGGAATAGGGAAAACGTAGGAT 59.280 41.667 0.00 0.00 0.00 3.24
3290 4487 4.081309 CACAGGAATAGGGAAAACGTAGGA 60.081 45.833 0.00 0.00 0.00 2.94
3291 4488 4.189231 CACAGGAATAGGGAAAACGTAGG 58.811 47.826 0.00 0.00 0.00 3.18
3292 4489 4.828829 ACACAGGAATAGGGAAAACGTAG 58.171 43.478 0.00 0.00 0.00 3.51
3293 4490 4.895668 ACACAGGAATAGGGAAAACGTA 57.104 40.909 0.00 0.00 0.00 3.57
3294 4491 3.782656 ACACAGGAATAGGGAAAACGT 57.217 42.857 0.00 0.00 0.00 3.99
3295 4492 5.447624 AAAACACAGGAATAGGGAAAACG 57.552 39.130 0.00 0.00 0.00 3.60
3296 4493 5.465390 GCAAAAACACAGGAATAGGGAAAAC 59.535 40.000 0.00 0.00 0.00 2.43
3297 4494 5.129485 TGCAAAAACACAGGAATAGGGAAAA 59.871 36.000 0.00 0.00 0.00 2.29
3298 4495 4.651503 TGCAAAAACACAGGAATAGGGAAA 59.348 37.500 0.00 0.00 0.00 3.13
3299 4496 4.219115 TGCAAAAACACAGGAATAGGGAA 58.781 39.130 0.00 0.00 0.00 3.97
3300 4497 3.838565 TGCAAAAACACAGGAATAGGGA 58.161 40.909 0.00 0.00 0.00 4.20
3301 4498 4.599047 TTGCAAAAACACAGGAATAGGG 57.401 40.909 0.00 0.00 0.00 3.53
3302 4499 5.047092 AGGATTGCAAAAACACAGGAATAGG 60.047 40.000 1.71 0.00 0.00 2.57
3303 4500 6.029346 AGGATTGCAAAAACACAGGAATAG 57.971 37.500 1.71 0.00 0.00 1.73
3304 4501 7.395772 TCATAGGATTGCAAAAACACAGGAATA 59.604 33.333 1.71 0.00 0.00 1.75
3305 4502 4.961438 AGGATTGCAAAAACACAGGAAT 57.039 36.364 1.71 0.00 0.00 3.01
3306 4503 5.538053 TCATAGGATTGCAAAAACACAGGAA 59.462 36.000 1.71 0.00 0.00 3.36
3307 4504 5.076182 TCATAGGATTGCAAAAACACAGGA 58.924 37.500 1.71 0.00 0.00 3.86
3308 4505 5.389859 TCATAGGATTGCAAAAACACAGG 57.610 39.130 1.71 0.00 0.00 4.00
3309 4506 7.092079 TGATTCATAGGATTGCAAAAACACAG 58.908 34.615 1.71 0.00 0.00 3.66
3310 4507 6.990798 TGATTCATAGGATTGCAAAAACACA 58.009 32.000 1.71 0.00 0.00 3.72
3311 4508 7.887996 TTGATTCATAGGATTGCAAAAACAC 57.112 32.000 1.71 0.00 0.00 3.32
3312 4509 8.366401 TCTTTGATTCATAGGATTGCAAAAACA 58.634 29.630 1.71 0.00 0.00 2.83
3313 4510 8.761575 TCTTTGATTCATAGGATTGCAAAAAC 57.238 30.769 1.71 0.00 0.00 2.43
3314 4511 8.036575 CCTCTTTGATTCATAGGATTGCAAAAA 58.963 33.333 1.71 0.00 0.00 1.94
3315 4512 7.549839 CCTCTTTGATTCATAGGATTGCAAAA 58.450 34.615 1.71 0.00 0.00 2.44
3316 4513 6.406177 GCCTCTTTGATTCATAGGATTGCAAA 60.406 38.462 1.71 0.00 0.00 3.68
3317 4514 5.068198 GCCTCTTTGATTCATAGGATTGCAA 59.932 40.000 0.00 0.00 0.00 4.08
3318 4515 4.581824 GCCTCTTTGATTCATAGGATTGCA 59.418 41.667 12.17 0.00 0.00 4.08
3319 4516 4.022503 GGCCTCTTTGATTCATAGGATTGC 60.023 45.833 12.17 6.85 0.00 3.56
3320 4517 4.522022 GGGCCTCTTTGATTCATAGGATTG 59.478 45.833 0.84 0.00 0.00 2.67
3321 4518 4.418190 AGGGCCTCTTTGATTCATAGGATT 59.582 41.667 0.00 0.00 0.00 3.01
3322 4519 3.986134 AGGGCCTCTTTGATTCATAGGAT 59.014 43.478 0.00 0.00 0.00 3.24
3323 4520 3.397527 AGGGCCTCTTTGATTCATAGGA 58.602 45.455 0.00 0.85 0.00 2.94
3324 4521 3.872459 AGGGCCTCTTTGATTCATAGG 57.128 47.619 0.00 5.38 0.00 2.57
3325 4522 6.179906 TCTAAGGGCCTCTTTGATTCATAG 57.820 41.667 6.46 0.28 36.93 2.23
3326 4523 5.667626 ACTCTAAGGGCCTCTTTGATTCATA 59.332 40.000 6.46 0.00 36.82 2.15
3327 4524 4.476479 ACTCTAAGGGCCTCTTTGATTCAT 59.524 41.667 6.46 0.00 36.82 2.57
3328 4525 3.846588 ACTCTAAGGGCCTCTTTGATTCA 59.153 43.478 6.46 0.00 36.82 2.57
3329 4526 4.195416 CACTCTAAGGGCCTCTTTGATTC 58.805 47.826 6.46 0.00 36.82 2.52
3330 4527 3.623453 GCACTCTAAGGGCCTCTTTGATT 60.623 47.826 6.46 9.28 39.15 2.57
3331 4528 2.092699 GCACTCTAAGGGCCTCTTTGAT 60.093 50.000 6.46 0.00 39.15 2.57
3332 4529 1.279271 GCACTCTAAGGGCCTCTTTGA 59.721 52.381 6.46 12.82 39.15 2.69
3333 4530 1.743996 GCACTCTAAGGGCCTCTTTG 58.256 55.000 6.46 9.67 39.15 2.77
3340 4537 0.749454 CACATGGGCACTCTAAGGGC 60.749 60.000 0.00 0.00 45.94 5.19
3341 4538 0.620556 ACACATGGGCACTCTAAGGG 59.379 55.000 0.00 0.00 0.00 3.95
3342 4539 1.003580 ACACACATGGGCACTCTAAGG 59.996 52.381 0.00 0.00 0.00 2.69
3343 4540 2.079158 CACACACATGGGCACTCTAAG 58.921 52.381 0.00 0.00 0.00 2.18
3344 4541 1.419762 ACACACACATGGGCACTCTAA 59.580 47.619 0.00 0.00 29.20 2.10
3345 4542 1.055849 ACACACACATGGGCACTCTA 58.944 50.000 0.00 0.00 29.20 2.43
3346 4543 0.535780 CACACACACATGGGCACTCT 60.536 55.000 0.00 0.00 29.20 3.24
3347 4544 0.819259 ACACACACACATGGGCACTC 60.819 55.000 0.00 0.00 29.20 3.51
3348 4545 1.102809 CACACACACACATGGGCACT 61.103 55.000 0.00 0.00 29.20 4.40
3349 4546 1.359833 CACACACACACATGGGCAC 59.640 57.895 0.00 0.00 29.20 5.01
3350 4547 0.682532 AACACACACACACATGGGCA 60.683 50.000 0.00 0.00 29.20 5.36
3351 4548 0.459489 AAACACACACACACATGGGC 59.541 50.000 0.00 0.00 29.20 5.36
3352 4549 2.928757 CAAAAACACACACACACATGGG 59.071 45.455 0.00 0.00 34.29 4.00
3353 4550 3.842820 TCAAAAACACACACACACATGG 58.157 40.909 0.00 0.00 0.00 3.66
3354 4551 4.731720 TCTCAAAAACACACACACACATG 58.268 39.130 0.00 0.00 0.00 3.21
3355 4552 5.160641 GTTCTCAAAAACACACACACACAT 58.839 37.500 0.00 0.00 0.00 3.21
3356 4553 4.036852 TGTTCTCAAAAACACACACACACA 59.963 37.500 0.00 0.00 34.31 3.72
3383 4580 1.803519 CAGCGTCCTCGTTCTCAGC 60.804 63.158 0.00 0.00 39.49 4.26
3384 4581 1.803519 GCAGCGTCCTCGTTCTCAG 60.804 63.158 0.00 0.00 39.49 3.35
3385 4582 2.258591 GCAGCGTCCTCGTTCTCA 59.741 61.111 0.00 0.00 39.49 3.27
3388 4585 2.811317 CCTGCAGCGTCCTCGTTC 60.811 66.667 8.66 0.00 39.49 3.95
3416 5068 7.709149 ATTATGGATAAAGAAAGCTATGGCC 57.291 36.000 0.00 0.00 39.73 5.36
3454 5108 4.005650 TGTCAAGAAACTGATGGCTCATC 58.994 43.478 7.90 7.90 40.88 2.92
3455 5109 4.025040 TGTCAAGAAACTGATGGCTCAT 57.975 40.909 0.00 0.00 0.00 2.90
3476 5130 4.618920 AGAGACGGACAACCAAGTAATT 57.381 40.909 0.00 0.00 35.59 1.40
3491 5145 2.285827 CCAAGTGGCTCTAAGAGACG 57.714 55.000 0.00 0.00 41.34 4.18
3559 5213 8.970691 AAAGAAATAGGACAACATTTCAATCG 57.029 30.769 9.09 0.00 41.53 3.34
3597 5252 6.258160 CACATCGAAATAGGACAACATTTCC 58.742 40.000 0.00 0.00 37.71 3.13
3622 5277 2.293955 TGTCACAATGCATCACAACCAG 59.706 45.455 0.00 0.00 0.00 4.00
3627 5282 3.704512 GTGTTTGTCACAATGCATCACA 58.295 40.909 0.00 0.00 45.51 3.58
3628 5283 3.732219 CAGTGTTTGTCACAATGCATCAC 59.268 43.478 0.00 0.00 44.08 3.06
3666 5328 3.059166 CCTTGTGAAATTTTCCTTGGCG 58.941 45.455 6.68 0.00 0.00 5.69
3737 5400 7.419750 GGAGTGGACCAATGATTTACTATGGTA 60.420 40.741 0.00 0.00 44.12 3.25
3757 5420 2.763448 TGGGAAACTTTTGTTGGAGTGG 59.237 45.455 0.00 0.00 42.67 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.