Multiple sequence alignment - TraesCS2B01G171900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G171900 chr2B 100.000 4086 0 0 1 4086 146443544 146439459 0.000000e+00 7546.0
1 TraesCS2B01G171900 chr2B 76.000 200 34 12 3576 3764 794383521 794383717 1.560000e-14 91.6
2 TraesCS2B01G171900 chr2A 93.286 3083 113 45 758 3792 92318600 92315564 0.000000e+00 4460.0
3 TraesCS2B01G171900 chr2A 95.937 443 9 6 352 791 92319064 92318628 0.000000e+00 710.0
4 TraesCS2B01G171900 chr2A 94.012 334 15 4 1 329 92319493 92319160 6.100000e-138 501.0
5 TraesCS2B01G171900 chr2A 84.000 400 38 10 3711 4086 92315560 92315163 1.080000e-95 361.0
6 TraesCS2B01G171900 chr2D 91.912 2275 120 39 1820 4057 94318468 94316221 0.000000e+00 3123.0
7 TraesCS2B01G171900 chr2D 91.114 1823 66 35 1 1788 94320500 94318739 0.000000e+00 2381.0
8 TraesCS2B01G171900 chr5B 84.173 278 28 7 63 336 671705312 671705047 5.240000e-64 255.0
9 TraesCS2B01G171900 chr5B 86.634 202 24 2 1096 1294 416851135 416850934 1.910000e-53 220.0
10 TraesCS2B01G171900 chr5B 83.077 195 31 2 1104 1297 497757950 497757757 4.200000e-40 176.0
11 TraesCS2B01G171900 chr5A 86.574 216 24 3 1082 1294 453877127 453876914 2.460000e-57 233.0
12 TraesCS2B01G171900 chr5A 83.590 195 30 2 1104 1297 525079250 525079057 9.020000e-42 182.0
13 TraesCS2B01G171900 chr5D 86.634 202 24 2 1096 1294 352219245 352219446 1.910000e-53 220.0
14 TraesCS2B01G171900 chr1B 83.957 187 28 2 1105 1290 595176892 595177077 1.170000e-40 178.0
15 TraesCS2B01G171900 chr1D 82.353 187 31 2 1105 1290 439022280 439022465 1.180000e-35 161.0
16 TraesCS2B01G171900 chr3B 78.919 185 39 0 1110 1294 524325535 524325719 4.290000e-25 126.0
17 TraesCS2B01G171900 chr3A 78.378 185 40 0 1110 1294 517491287 517491471 1.990000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G171900 chr2B 146439459 146443544 4085 True 7546 7546 100.00000 1 4086 1 chr2B.!!$R1 4085
1 TraesCS2B01G171900 chr2A 92315163 92319493 4330 True 1508 4460 91.80875 1 4086 4 chr2A.!!$R1 4085
2 TraesCS2B01G171900 chr2D 94316221 94320500 4279 True 2752 3123 91.51300 1 4057 2 chr2D.!!$R1 4056

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 725 0.031857 CGGCTCTGCTGATCTAGTGG 59.968 60.0 0.00 0.0 37.02 4.00 F
1767 1958 1.014044 CGTCCATCACCCACTGTTCG 61.014 60.0 0.00 0.0 0.00 3.95 F
2668 3114 0.034670 ACTTCCATGAAGAGCCAGCC 60.035 55.0 10.62 0.0 41.71 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 2554 0.106708 TTGACAGTGGAGAGTGGTGC 59.893 55.0 0.00 0.0 0.00 5.01 R
3054 3503 0.746923 TCCGAGATCATGGACGACGT 60.747 55.0 0.00 0.0 0.00 4.34 R
3679 4152 1.491670 CCTGTGTGTTGTCAGACTCG 58.508 55.0 1.31 0.0 38.44 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 112 5.800296 TGCAGCTTCAGTAATTACCTTGTA 58.200 37.500 12.05 0.00 0.00 2.41
149 156 3.869832 GCCGTAGAACCCTTCAGAATTAC 59.130 47.826 0.00 0.00 0.00 1.89
161 168 6.190587 CCTTCAGAATTACCTCTGGGAATTT 58.809 40.000 8.07 0.00 42.68 1.82
251 258 3.512516 GCCATGGCGCCTTGTCTC 61.513 66.667 32.92 20.86 0.00 3.36
302 309 5.488919 TGGGTCTGAGAAAACTATCCTTGAT 59.511 40.000 0.00 0.00 0.00 2.57
329 336 2.802247 GCACTGCATTTTTGGAGGAAAC 59.198 45.455 0.00 0.00 0.00 2.78
330 337 3.052036 CACTGCATTTTTGGAGGAAACG 58.948 45.455 0.00 0.00 0.00 3.60
331 338 2.955660 ACTGCATTTTTGGAGGAAACGA 59.044 40.909 0.00 0.00 0.00 3.85
399 479 3.691118 GTGCATGATCCTTACAAAGCTGA 59.309 43.478 0.00 0.00 0.00 4.26
455 539 4.256920 AGCACATTAGGACTGTAGCAAAG 58.743 43.478 0.00 0.00 0.00 2.77
607 694 6.360947 GCGTACGCATATATAATGATGAGAGG 59.639 42.308 33.90 0.00 41.49 3.69
608 695 7.418408 CGTACGCATATATAATGATGAGAGGT 58.582 38.462 0.52 0.00 0.00 3.85
637 725 0.031857 CGGCTCTGCTGATCTAGTGG 59.968 60.000 0.00 0.00 37.02 4.00
643 731 4.023536 GCTCTGCTGATCTAGTGGTACTAC 60.024 50.000 0.19 0.19 0.00 2.73
644 732 5.373222 CTCTGCTGATCTAGTGGTACTACT 58.627 45.833 16.68 16.68 34.71 2.57
645 733 6.496144 TCTGCTGATCTAGTGGTACTACTA 57.504 41.667 17.13 17.13 32.19 1.82
647 735 6.099990 TCTGCTGATCTAGTGGTACTACTAGT 59.900 42.308 32.97 24.31 46.51 2.57
648 736 7.289549 TCTGCTGATCTAGTGGTACTACTAGTA 59.710 40.741 32.97 23.96 46.51 1.82
649 737 7.443477 TGCTGATCTAGTGGTACTACTAGTAG 58.557 42.308 32.97 28.56 46.51 2.57
661 749 6.437162 GGTACTACTAGTAGCCTAGCTAGAGA 59.563 46.154 26.54 3.77 43.87 3.10
848 1012 2.816672 CAGCCTTTCTTTCTTCCTCACC 59.183 50.000 0.00 0.00 0.00 4.02
1395 1567 3.058639 AGTCTGCTCTTTGTTCGATTTGC 60.059 43.478 0.00 0.00 0.00 3.68
1400 1572 3.607078 GCTCTTTGTTCGATTTGCTTCGT 60.607 43.478 0.00 0.00 40.03 3.85
1401 1573 4.527564 CTCTTTGTTCGATTTGCTTCGTT 58.472 39.130 0.00 0.00 40.03 3.85
1402 1574 5.660629 TCTTTGTTCGATTTGCTTCGTTA 57.339 34.783 0.00 0.00 40.03 3.18
1403 1575 6.050454 TCTTTGTTCGATTTGCTTCGTTAA 57.950 33.333 0.00 0.00 40.03 2.01
1443 1618 2.023414 TAGTTAGGGCGTCCATGGCG 62.023 60.000 19.99 19.99 34.83 5.69
1444 1619 3.395702 TTAGGGCGTCCATGGCGT 61.396 61.111 23.32 11.17 36.45 5.68
1445 1620 3.673956 TTAGGGCGTCCATGGCGTG 62.674 63.158 23.32 10.83 34.22 5.34
1447 1622 4.460683 GGGCGTCCATGGCGTGTA 62.461 66.667 23.32 0.00 34.76 2.90
1448 1623 3.192922 GGCGTCCATGGCGTGTAC 61.193 66.667 23.32 9.81 0.00 2.90
1545 1732 1.366366 GCATGCATGGATGGCCTTC 59.634 57.895 27.34 10.18 34.31 3.46
1546 1733 2.046938 CATGCATGGATGGCCTTCC 58.953 57.895 27.15 27.15 36.24 3.46
1602 1789 6.071728 ACAAGCTAGATGCAAAAGTTAATGCT 60.072 34.615 13.01 0.00 45.94 3.79
1613 1800 6.144563 GCAAAAGTTAATGCTCCTCTTTTCAC 59.855 38.462 6.37 0.00 39.46 3.18
1767 1958 1.014044 CGTCCATCACCCACTGTTCG 61.014 60.000 0.00 0.00 0.00 3.95
1851 2282 2.733956 ACTTTGGTCTTGCTTTGGTGA 58.266 42.857 0.00 0.00 0.00 4.02
1857 2288 2.095718 GGTCTTGCTTTGGTGACGATTC 60.096 50.000 0.00 0.00 0.00 2.52
2036 2470 6.061441 TCTTCTGTCACTTGGATAGCAAAAA 58.939 36.000 0.00 0.00 34.93 1.94
2120 2554 0.606401 ACACTCTCCCAACATTGCCG 60.606 55.000 0.00 0.00 0.00 5.69
2200 2635 4.815533 ATGTATGTAGAGCTATGCCCTG 57.184 45.455 0.00 0.00 0.00 4.45
2377 2823 8.972127 ACTAGCTATAAGAACAGTCTGATTGAA 58.028 33.333 6.91 0.00 33.05 2.69
2479 2925 3.117512 AGTTCTTCAGGAAGGGAGCAAAA 60.118 43.478 9.03 0.00 38.88 2.44
2488 2934 0.111253 AGGGAGCAAAACACCTCCTG 59.889 55.000 6.64 0.00 45.54 3.86
2491 2937 1.527433 GAGCAAAACACCTCCTGGCC 61.527 60.000 0.00 0.00 36.63 5.36
2656 3102 0.036388 CGGTGTACCAGCACTTCCAT 60.036 55.000 1.50 0.00 39.21 3.41
2668 3114 0.034670 ACTTCCATGAAGAGCCAGCC 60.035 55.000 10.62 0.00 41.71 4.85
2932 3378 1.374631 CAACTCGTGCAGGCTGCTA 60.375 57.895 36.50 21.92 45.31 3.49
2957 3403 2.602267 ACATGGACGTGGACCGGA 60.602 61.111 9.46 0.00 42.24 5.14
3089 3538 0.818445 CGGAAGCGAGGTCTAGGCTA 60.818 60.000 0.00 0.00 35.64 3.93
3219 3673 2.746277 GCGGGTGCTGGTCGATTT 60.746 61.111 0.00 0.00 38.39 2.17
3339 3797 0.112995 AGCCCTTGCACCATTCTTCA 59.887 50.000 0.00 0.00 41.13 3.02
3391 3851 2.590007 GCACGAGGGCCTGCTATG 60.590 66.667 12.95 4.50 0.00 2.23
3426 3886 5.473066 AAACTGGTTGCTCAATGCTATTT 57.527 34.783 0.00 0.00 43.37 1.40
3428 3888 6.588719 AACTGGTTGCTCAATGCTATTTAA 57.411 33.333 0.00 0.00 43.37 1.52
3429 3889 6.199937 ACTGGTTGCTCAATGCTATTTAAG 57.800 37.500 0.00 0.00 43.37 1.85
3430 3890 5.711976 ACTGGTTGCTCAATGCTATTTAAGT 59.288 36.000 0.00 0.00 43.37 2.24
3431 3891 5.953183 TGGTTGCTCAATGCTATTTAAGTG 58.047 37.500 0.00 0.00 43.37 3.16
3432 3892 4.800471 GGTTGCTCAATGCTATTTAAGTGC 59.200 41.667 0.00 0.00 43.37 4.40
3433 3893 4.277257 TGCTCAATGCTATTTAAGTGCG 57.723 40.909 0.00 0.00 43.37 5.34
3435 3895 4.394610 TGCTCAATGCTATTTAAGTGCGAA 59.605 37.500 0.00 0.00 43.37 4.70
3436 3896 4.966366 GCTCAATGCTATTTAAGTGCGAAG 59.034 41.667 0.00 0.00 38.95 3.79
3437 3897 5.447818 GCTCAATGCTATTTAAGTGCGAAGT 60.448 40.000 0.00 0.00 38.95 3.01
3438 3898 5.868257 TCAATGCTATTTAAGTGCGAAGTG 58.132 37.500 0.00 0.00 0.00 3.16
3439 3899 5.411361 TCAATGCTATTTAAGTGCGAAGTGT 59.589 36.000 0.00 0.00 0.00 3.55
3440 3900 4.921470 TGCTATTTAAGTGCGAAGTGTC 57.079 40.909 0.00 0.00 0.00 3.67
3441 3901 4.566004 TGCTATTTAAGTGCGAAGTGTCT 58.434 39.130 0.00 0.00 0.00 3.41
3442 3902 5.716094 TGCTATTTAAGTGCGAAGTGTCTA 58.284 37.500 0.00 0.00 0.00 2.59
3443 3903 6.338146 TGCTATTTAAGTGCGAAGTGTCTAT 58.662 36.000 0.00 0.00 0.00 1.98
3467 3927 5.053140 TCTCTTCTTTCTCTCATGACACG 57.947 43.478 0.00 0.00 0.00 4.49
3468 3928 4.082517 TCTCTTCTTTCTCTCATGACACGG 60.083 45.833 0.00 0.00 0.00 4.94
3469 3929 3.056536 TCTTCTTTCTCTCATGACACGGG 60.057 47.826 0.00 0.00 0.00 5.28
3471 3931 2.897326 TCTTTCTCTCATGACACGGGAA 59.103 45.455 0.00 0.00 0.00 3.97
3472 3932 3.515502 TCTTTCTCTCATGACACGGGAAT 59.484 43.478 0.00 0.00 0.00 3.01
3473 3933 4.709886 TCTTTCTCTCATGACACGGGAATA 59.290 41.667 0.00 0.00 0.00 1.75
3475 3935 3.898482 TCTCTCATGACACGGGAATAGA 58.102 45.455 0.00 0.00 0.00 1.98
3500 3966 4.623932 AAGTAGAAGATGAGTTGTGCCA 57.376 40.909 0.00 0.00 0.00 4.92
3517 3983 5.128205 TGTGCCATATCCTCTTCAATTCAG 58.872 41.667 0.00 0.00 0.00 3.02
3519 3985 6.126796 TGTGCCATATCCTCTTCAATTCAGTA 60.127 38.462 0.00 0.00 0.00 2.74
3520 3986 6.939163 GTGCCATATCCTCTTCAATTCAGTAT 59.061 38.462 0.00 0.00 0.00 2.12
3594 4067 3.245048 CGCCACATGAAAAACAAAGGAAC 59.755 43.478 0.00 0.00 0.00 3.62
3599 4072 5.574830 CACATGAAAAACAAAGGAACGACAA 59.425 36.000 0.00 0.00 0.00 3.18
3610 4083 5.828299 AAGGAACGACAAATTTGAGTTGA 57.172 34.783 27.77 0.00 34.66 3.18
3611 4084 5.169836 AGGAACGACAAATTTGAGTTGAC 57.830 39.130 27.77 22.02 34.66 3.18
3612 4085 4.638421 AGGAACGACAAATTTGAGTTGACA 59.362 37.500 27.77 0.00 34.66 3.58
3613 4086 4.733405 GGAACGACAAATTTGAGTTGACAC 59.267 41.667 27.77 18.37 34.66 3.67
3643 4116 3.194755 GCCCCAAAATAGTGTGTAAAGGG 59.805 47.826 0.00 0.00 0.00 3.95
3648 4121 6.095440 CCCAAAATAGTGTGTAAAGGGATCAG 59.905 42.308 0.00 0.00 35.81 2.90
3659 4132 7.610305 TGTGTAAAGGGATCAGTAGGAATTTTC 59.390 37.037 0.00 0.00 0.00 2.29
3696 4176 0.174617 TGCGAGTCTGACAACACACA 59.825 50.000 10.88 0.00 0.00 3.72
3806 4371 5.388654 CCTACAATTTTCATATGAGGGGCT 58.611 41.667 5.39 0.00 0.00 5.19
3828 4401 7.195839 GCTGAGATAAGCCTAATTAACAAGG 57.804 40.000 1.26 1.26 37.20 3.61
3865 4438 8.193438 CCTCCCAAATTTTTAAAATTTTGCACA 58.807 29.630 27.48 18.01 37.66 4.57
3879 4452 5.781210 TTTTGCACACATGTATTGGAGAA 57.219 34.783 0.00 0.00 0.00 2.87
3944 4518 3.006323 CCTCAACTCACTGTGAACTAGCT 59.994 47.826 12.16 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 7.065283 GCAGAAATTTACATGCAACAACTTTC 58.935 34.615 14.40 2.06 38.54 2.62
63 64 6.047870 TGCAGAAATTTACATGCAACAACTT 58.952 32.000 17.93 0.00 45.09 2.66
107 112 4.762765 CGGCTAGTGTCCTACTATCTTGAT 59.237 45.833 0.00 0.00 40.94 2.57
115 120 3.277715 GTTCTACGGCTAGTGTCCTACT 58.722 50.000 0.00 0.00 43.56 2.57
149 156 3.891366 ACTTGTTGTGAAATTCCCAGAGG 59.109 43.478 0.00 0.00 0.00 3.69
161 168 3.312421 GCTCTTGCTGTTACTTGTTGTGA 59.688 43.478 0.00 0.00 36.03 3.58
302 309 4.059511 CTCCAAAAATGCAGTGCAAATGA 58.940 39.130 23.90 11.67 43.62 2.57
329 336 3.829886 AAACTTGTATGCATGTGGTCG 57.170 42.857 10.16 0.00 33.92 4.79
330 337 4.150451 GCAAAAACTTGTATGCATGTGGTC 59.850 41.667 10.16 0.00 38.63 4.02
331 338 4.057432 GCAAAAACTTGTATGCATGTGGT 58.943 39.130 10.16 0.00 38.63 4.16
399 479 2.086869 GTACTGGTCAATGTGCAGCAT 58.913 47.619 0.00 0.00 40.03 3.79
455 539 3.979495 GCAACTGAATTAGCATATGCAGC 59.021 43.478 28.62 13.10 45.16 5.25
637 725 7.466746 TCTCTAGCTAGGCTACTAGTAGTAC 57.533 44.000 26.76 20.45 46.81 2.73
661 749 3.056179 CCTCTTTCCTTCTCTCTTTCGCT 60.056 47.826 0.00 0.00 0.00 4.93
1236 1408 6.821665 AGAAGTTGTTGTGCTTGAAGTAGTTA 59.178 34.615 0.00 0.00 0.00 2.24
1349 1521 2.935849 CTGGACTAAACATGCATGCGTA 59.064 45.455 26.53 16.66 0.00 4.42
1443 1618 6.202762 CACATCCCACACATATACATGTACAC 59.797 42.308 7.96 0.00 43.73 2.90
1444 1619 6.126911 ACACATCCCACACATATACATGTACA 60.127 38.462 7.96 0.00 43.73 2.90
1445 1620 6.288294 ACACATCCCACACATATACATGTAC 58.712 40.000 7.96 0.00 43.73 2.90
1446 1621 6.493189 ACACATCCCACACATATACATGTA 57.507 37.500 8.27 8.27 43.73 2.29
1447 1622 5.372343 ACACATCCCACACATATACATGT 57.628 39.130 2.69 2.69 46.58 3.21
1448 1623 5.821995 TGAACACATCCCACACATATACATG 59.178 40.000 0.00 0.00 38.21 3.21
1545 1732 3.322828 GGAAACAATGGATGGATGGATGG 59.677 47.826 0.00 0.00 0.00 3.51
1546 1733 4.220724 AGGAAACAATGGATGGATGGATG 58.779 43.478 0.00 0.00 0.00 3.51
1547 1734 4.547886 AGGAAACAATGGATGGATGGAT 57.452 40.909 0.00 0.00 0.00 3.41
1548 1735 4.726317 TCTAGGAAACAATGGATGGATGGA 59.274 41.667 0.00 0.00 0.00 3.41
1549 1736 5.052693 TCTAGGAAACAATGGATGGATGG 57.947 43.478 0.00 0.00 0.00 3.51
1602 1789 6.042143 GCAAACAAAATCTGTGAAAAGAGGA 58.958 36.000 0.00 0.00 38.67 3.71
1613 1800 2.053627 GCACCTCGCAAACAAAATCTG 58.946 47.619 0.00 0.00 41.79 2.90
1816 2008 7.554959 AGACCAAAGTAGTAAGAAATGGAGA 57.445 36.000 0.00 0.00 0.00 3.71
1851 2282 1.089920 GTCCAGCTTGCATGAATCGT 58.910 50.000 3.33 0.00 0.00 3.73
1857 2288 2.642139 AAAATCGTCCAGCTTGCATG 57.358 45.000 0.00 0.00 0.00 4.06
2036 2470 5.105554 TCCACATTAGTTTGTGCACTTGTTT 60.106 36.000 19.41 2.68 44.53 2.83
2120 2554 0.106708 TTGACAGTGGAGAGTGGTGC 59.893 55.000 0.00 0.00 0.00 5.01
2479 2925 2.039624 ATCTCGGCCAGGAGGTGT 59.960 61.111 2.24 0.00 37.19 4.16
2488 2934 3.917760 CTCCGGTGGATCTCGGCC 61.918 72.222 0.00 0.00 45.31 6.13
2491 2937 1.038130 ACTTCCTCCGGTGGATCTCG 61.038 60.000 25.24 15.72 35.83 4.04
2617 3063 2.224354 CGGGTGATGGTGATGATGATGA 60.224 50.000 0.00 0.00 0.00 2.92
2618 3064 2.148768 CGGGTGATGGTGATGATGATG 58.851 52.381 0.00 0.00 0.00 3.07
2619 3065 1.072806 CCGGGTGATGGTGATGATGAT 59.927 52.381 0.00 0.00 0.00 2.45
2932 3378 1.593787 CACGTCCATGTCCAGCTCT 59.406 57.895 0.00 0.00 0.00 4.09
3054 3503 0.746923 TCCGAGATCATGGACGACGT 60.747 55.000 0.00 0.00 0.00 4.34
3060 3509 2.807247 TCGCTTCCGAGATCATGGA 58.193 52.632 2.03 2.03 38.82 3.41
3089 3538 3.950254 CGAGATCGCCGGCGTAGT 61.950 66.667 44.16 31.61 40.74 2.73
3219 3673 5.264395 TGATCCTAACTCATCTCTCACACA 58.736 41.667 0.00 0.00 0.00 3.72
3339 3797 5.657474 CAAAGGCAGCAAAGAACATATCAT 58.343 37.500 0.00 0.00 0.00 2.45
3426 3886 6.268825 AGAGAAATAGACACTTCGCACTTA 57.731 37.500 0.00 0.00 0.00 2.24
3428 3888 4.792521 AGAGAAATAGACACTTCGCACT 57.207 40.909 0.00 0.00 0.00 4.40
3429 3889 5.164954 AGAAGAGAAATAGACACTTCGCAC 58.835 41.667 0.00 0.00 38.97 5.34
3430 3890 5.392767 AGAAGAGAAATAGACACTTCGCA 57.607 39.130 0.00 0.00 38.97 5.10
3431 3891 6.588373 AGAAAGAAGAGAAATAGACACTTCGC 59.412 38.462 0.00 0.00 38.97 4.70
3432 3892 8.026607 AGAGAAAGAAGAGAAATAGACACTTCG 58.973 37.037 0.00 0.00 38.97 3.79
3433 3893 9.353999 GAGAGAAAGAAGAGAAATAGACACTTC 57.646 37.037 0.00 0.00 36.02 3.01
3435 3895 8.415950 TGAGAGAAAGAAGAGAAATAGACACT 57.584 34.615 0.00 0.00 0.00 3.55
3436 3896 9.086336 CATGAGAGAAAGAAGAGAAATAGACAC 57.914 37.037 0.00 0.00 0.00 3.67
3437 3897 9.029368 TCATGAGAGAAAGAAGAGAAATAGACA 57.971 33.333 0.00 0.00 0.00 3.41
3438 3898 9.301153 GTCATGAGAGAAAGAAGAGAAATAGAC 57.699 37.037 0.00 0.00 0.00 2.59
3439 3899 9.029368 TGTCATGAGAGAAAGAAGAGAAATAGA 57.971 33.333 0.00 0.00 0.00 1.98
3440 3900 9.086336 GTGTCATGAGAGAAAGAAGAGAAATAG 57.914 37.037 0.00 0.00 0.00 1.73
3441 3901 7.757173 CGTGTCATGAGAGAAAGAAGAGAAATA 59.243 37.037 0.00 0.00 0.00 1.40
3442 3902 6.589523 CGTGTCATGAGAGAAAGAAGAGAAAT 59.410 38.462 0.00 0.00 0.00 2.17
3443 3903 5.923114 CGTGTCATGAGAGAAAGAAGAGAAA 59.077 40.000 0.00 0.00 0.00 2.52
3573 4046 3.245048 CGTTCCTTTGTTTTTCATGTGGC 59.755 43.478 0.00 0.00 0.00 5.01
3594 4067 6.810888 ATTTGTGTCAACTCAAATTTGTCG 57.189 33.333 17.47 12.20 43.38 4.35
3643 4116 6.579865 TCCTTACGGAAAATTCCTACTGATC 58.420 40.000 10.31 0.00 45.33 2.92
3648 4121 6.117488 TGGAATCCTTACGGAAAATTCCTAC 58.883 40.000 24.37 8.39 42.61 3.18
3679 4152 1.491670 CCTGTGTGTTGTCAGACTCG 58.508 55.000 1.31 0.00 38.44 4.18
3684 4157 5.964958 AAATTATCCCTGTGTGTTGTCAG 57.035 39.130 0.00 0.00 0.00 3.51
3696 4176 6.872585 TTTGCATCCTTCAAAATTATCCCT 57.127 33.333 0.00 0.00 31.27 4.20
3833 4406 8.806429 AATTTTAAAAATTTGGGAGGGCATAG 57.194 30.769 4.44 0.00 0.00 2.23
3865 4438 3.334583 ACTGCGTTCTCCAATACATGT 57.665 42.857 2.69 2.69 0.00 3.21
3879 4452 2.783135 AGATTGTCCATCAAACTGCGT 58.217 42.857 0.00 0.00 37.68 5.24
3929 4503 5.011635 TGTTGGAATAGCTAGTTCACAGTGA 59.988 40.000 0.55 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.