Multiple sequence alignment - TraesCS2B01G171600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G171600 chr2B 100.000 6611 0 0 1 6611 144649256 144655866 0.000000e+00 12209.0
1 TraesCS2B01G171600 chr2B 91.018 334 28 2 1218 1551 728194897 728194566 3.640000e-122 449.0
2 TraesCS2B01G171600 chr2B 82.651 513 51 17 1218 1729 26157232 26156757 2.850000e-113 420.0
3 TraesCS2B01G171600 chr2B 94.203 138 8 0 6474 6611 461788153 461788290 1.870000e-50 211.0
4 TraesCS2B01G171600 chr2B 93.525 139 9 0 6473 6611 534204328 534204190 2.420000e-49 207.0
5 TraesCS2B01G171600 chr2D 93.730 6411 230 63 136 6468 93081775 93088091 0.000000e+00 9454.0
6 TraesCS2B01G171600 chr2D 92.661 109 2 1 34 136 570988113 570988221 1.150000e-32 152.0
7 TraesCS2B01G171600 chr2D 90.385 104 4 1 39 136 356542359 356542462 1.500000e-26 132.0
8 TraesCS2B01G171600 chr2A 93.903 5773 211 53 136 5851 90758518 90764206 0.000000e+00 8580.0
9 TraesCS2B01G171600 chr2A 86.944 360 35 7 6120 6474 90766658 90767010 1.730000e-105 394.0
10 TraesCS2B01G171600 chr2A 95.455 176 4 4 5910 6081 90764413 90764588 1.820000e-70 278.0
11 TraesCS2B01G171600 chr2A 81.690 284 30 13 1261 1536 118442036 118442305 4.010000e-52 217.0
12 TraesCS2B01G171600 chr2A 93.525 139 9 0 6473 6611 624403526 624403664 2.420000e-49 207.0
13 TraesCS2B01G171600 chr2A 92.000 100 2 3 44 137 744083635 744083734 1.160000e-27 135.0
14 TraesCS2B01G171600 chr3B 90.646 727 54 10 2191 2904 211638023 211637298 0.000000e+00 953.0
15 TraesCS2B01G171600 chr3B 93.793 145 8 1 6467 6611 561379825 561379968 4.010000e-52 217.0
16 TraesCS2B01G171600 chr3B 90.385 104 4 1 39 136 383720085 383720188 1.500000e-26 132.0
17 TraesCS2B01G171600 chr4B 83.743 529 54 15 1210 1729 622948508 622949013 7.760000e-129 472.0
18 TraesCS2B01G171600 chr5B 83.862 378 37 13 1353 1729 619125645 619125999 8.210000e-89 339.0
19 TraesCS2B01G171600 chr5B 83.862 378 37 13 1353 1729 619178937 619179291 8.210000e-89 339.0
20 TraesCS2B01G171600 chr5B 93.525 139 9 0 6473 6611 73378695 73378833 2.420000e-49 207.0
21 TraesCS2B01G171600 chr5B 93.525 139 9 0 6473 6611 514263921 514264059 2.420000e-49 207.0
22 TraesCS2B01G171600 chr6B 94.203 138 8 0 6474 6611 127245501 127245364 1.870000e-50 211.0
23 TraesCS2B01G171600 chr6B 94.203 138 8 0 6474 6611 383278056 383277919 1.870000e-50 211.0
24 TraesCS2B01G171600 chr1B 92.414 145 11 0 6467 6611 483355988 483356132 2.420000e-49 207.0
25 TraesCS2B01G171600 chr1B 92.381 105 2 2 39 137 669708795 669708691 1.920000e-30 145.0
26 TraesCS2B01G171600 chr3A 79.505 283 38 13 1261 1536 514465599 514465868 4.070000e-42 183.0
27 TraesCS2B01G171600 chr7A 77.817 284 61 2 4070 4352 560310043 560310325 2.450000e-39 174.0
28 TraesCS2B01G171600 chr7A 93.269 104 1 1 39 136 665846054 665845951 1.490000e-31 148.0
29 TraesCS2B01G171600 chr7B 92.523 107 2 1 39 139 548477445 548477339 1.490000e-31 148.0
30 TraesCS2B01G171600 chr4D 89.720 107 5 2 39 139 484716177 484716071 1.500000e-26 132.0
31 TraesCS2B01G171600 chr3D 90.385 104 4 1 39 136 290872536 290872639 1.500000e-26 132.0
32 TraesCS2B01G171600 chr3D 100.000 28 0 0 1330 1357 412226112 412226139 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G171600 chr2B 144649256 144655866 6610 False 12209 12209 100.000000 1 6611 1 chr2B.!!$F1 6610
1 TraesCS2B01G171600 chr2D 93081775 93088091 6316 False 9454 9454 93.730000 136 6468 1 chr2D.!!$F1 6332
2 TraesCS2B01G171600 chr2A 90758518 90767010 8492 False 3084 8580 92.100667 136 6474 3 chr2A.!!$F4 6338
3 TraesCS2B01G171600 chr3B 211637298 211638023 725 True 953 953 90.646000 2191 2904 1 chr3B.!!$R1 713
4 TraesCS2B01G171600 chr4B 622948508 622949013 505 False 472 472 83.743000 1210 1729 1 chr4B.!!$F1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.178950 ACAGGACACAGCTCCTCTGA 60.179 55.000 0.00 0.0 45.72 3.27 F
1563 1632 0.105039 CACTCTCTAACGCCATCCCC 59.895 60.000 0.00 0.0 0.00 4.81 F
2457 2564 0.038067 TTCCATGTGCATGTGCTTGC 60.038 50.000 10.76 3.5 42.66 4.01 F
2538 2645 0.175302 AGAAGATGAGCTCACTGGCG 59.825 55.000 20.97 0.0 37.29 5.69 F
3035 3146 0.821517 TCTCACCAAGTGACGTGTGT 59.178 50.000 0.00 0.0 37.67 3.72 F
4268 4386 1.029681 AGGCGGAACCAAGTTTTGAC 58.970 50.000 0.00 0.0 43.14 3.18 F
4415 4533 2.223758 GCCGTACAGTAATGTCCTCCTC 60.224 54.545 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 1997 0.037605 AACCAAGCGACCCTCTAACG 60.038 55.000 0.00 0.00 0.00 3.18 R
3096 3207 0.182299 TTGTCATCTGCCCACACACA 59.818 50.000 0.00 0.00 0.00 3.72 R
4337 4455 1.219124 GGCAGTCATCCTCTTGCGA 59.781 57.895 0.00 0.00 0.00 5.10 R
4425 4543 3.587951 AGCATCATTCTGCAGGAGGATAT 59.412 43.478 21.31 10.81 44.77 1.63 R
4865 4990 3.450578 GCCTGCAAAATGTATGGACATG 58.549 45.455 0.00 0.00 45.93 3.21 R
5166 5291 0.393944 TCGGCGTCTCAGTCCAGTAT 60.394 55.000 6.85 0.00 0.00 2.12 R
6274 8605 0.599558 ACACGAGCAAACTACCGCTA 59.400 50.000 0.00 0.00 38.99 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.780924 TTCCCTTGCCCTGGTGGT 60.781 61.111 0.00 0.00 36.04 4.16
18 19 3.145473 TTCCCTTGCCCTGGTGGTG 62.145 63.158 0.00 0.00 36.04 4.17
19 20 4.684134 CCCTTGCCCTGGTGGTGG 62.684 72.222 0.00 0.00 36.04 4.61
20 21 3.579302 CCTTGCCCTGGTGGTGGA 61.579 66.667 0.00 0.00 36.04 4.02
21 22 2.034687 CTTGCCCTGGTGGTGGAG 59.965 66.667 0.00 0.00 36.04 3.86
22 23 2.776526 TTGCCCTGGTGGTGGAGT 60.777 61.111 0.00 0.00 36.04 3.85
23 24 3.132029 TTGCCCTGGTGGTGGAGTG 62.132 63.158 0.00 0.00 36.04 3.51
24 25 4.351054 GCCCTGGTGGTGGAGTGG 62.351 72.222 0.00 0.00 36.04 4.00
25 26 2.854032 CCCTGGTGGTGGAGTGGT 60.854 66.667 0.00 0.00 0.00 4.16
26 27 2.431683 CCTGGTGGTGGAGTGGTG 59.568 66.667 0.00 0.00 0.00 4.17
27 28 2.146724 CCTGGTGGTGGAGTGGTGA 61.147 63.158 0.00 0.00 0.00 4.02
28 29 1.071471 CTGGTGGTGGAGTGGTGAC 59.929 63.158 0.00 0.00 0.00 3.67
29 30 2.397413 CTGGTGGTGGAGTGGTGACC 62.397 65.000 0.00 0.00 0.00 4.02
30 31 2.448582 GGTGGTGGAGTGGTGACCA 61.449 63.158 0.00 0.00 37.43 4.02
31 32 1.071471 GTGGTGGAGTGGTGACCAG 59.929 63.158 3.58 0.00 40.46 4.00
32 33 2.032681 GGTGGAGTGGTGACCAGC 59.967 66.667 3.58 0.00 45.06 4.85
33 34 2.828868 GTGGAGTGGTGACCAGCA 59.171 61.111 3.58 0.00 36.82 4.41
34 35 1.148273 GTGGAGTGGTGACCAGCAA 59.852 57.895 3.58 0.00 40.82 3.91
35 36 0.465460 GTGGAGTGGTGACCAGCAAA 60.465 55.000 3.58 0.00 40.82 3.68
36 37 0.465460 TGGAGTGGTGACCAGCAAAC 60.465 55.000 3.58 0.00 40.82 2.93
37 38 0.465460 GGAGTGGTGACCAGCAAACA 60.465 55.000 3.58 0.00 40.82 2.83
38 39 0.947244 GAGTGGTGACCAGCAAACAG 59.053 55.000 3.58 0.00 40.82 3.16
39 40 0.466189 AGTGGTGACCAGCAAACAGG 60.466 55.000 3.58 0.00 40.82 4.00
40 41 0.465460 GTGGTGACCAGCAAACAGGA 60.465 55.000 3.58 0.00 40.82 3.86
41 42 0.465460 TGGTGACCAGCAAACAGGAC 60.465 55.000 0.00 0.00 35.69 3.85
42 43 0.465460 GGTGACCAGCAAACAGGACA 60.465 55.000 0.00 0.00 0.00 4.02
43 44 0.663153 GTGACCAGCAAACAGGACAC 59.337 55.000 0.00 0.00 39.89 3.67
44 45 0.254462 TGACCAGCAAACAGGACACA 59.746 50.000 0.00 0.00 0.00 3.72
45 46 0.947244 GACCAGCAAACAGGACACAG 59.053 55.000 0.00 0.00 0.00 3.66
46 47 1.103398 ACCAGCAAACAGGACACAGC 61.103 55.000 0.00 0.00 0.00 4.40
47 48 0.820891 CCAGCAAACAGGACACAGCT 60.821 55.000 0.00 0.00 0.00 4.24
48 49 0.590195 CAGCAAACAGGACACAGCTC 59.410 55.000 0.00 0.00 0.00 4.09
49 50 0.536006 AGCAAACAGGACACAGCTCC 60.536 55.000 0.00 0.00 0.00 4.70
50 51 0.536006 GCAAACAGGACACAGCTCCT 60.536 55.000 0.00 0.00 41.84 3.69
51 52 1.517242 CAAACAGGACACAGCTCCTC 58.483 55.000 0.00 0.00 38.77 3.71
52 53 1.071385 CAAACAGGACACAGCTCCTCT 59.929 52.381 0.00 0.00 38.77 3.69
54 55 0.178950 ACAGGACACAGCTCCTCTGA 60.179 55.000 0.00 0.00 45.72 3.27
55 56 0.246086 CAGGACACAGCTCCTCTGAC 59.754 60.000 0.00 0.00 45.72 3.51
56 57 1.214062 GGACACAGCTCCTCTGACG 59.786 63.158 0.00 0.00 45.72 4.35
57 58 1.528292 GGACACAGCTCCTCTGACGT 61.528 60.000 0.00 0.00 45.72 4.34
58 59 1.166129 GACACAGCTCCTCTGACGTA 58.834 55.000 0.00 0.00 45.72 3.57
59 60 0.882474 ACACAGCTCCTCTGACGTAC 59.118 55.000 0.00 0.00 45.72 3.67
60 61 0.179187 CACAGCTCCTCTGACGTACG 60.179 60.000 15.01 15.01 45.72 3.67
61 62 1.306642 ACAGCTCCTCTGACGTACGG 61.307 60.000 21.06 1.50 45.72 4.02
62 63 2.102553 GCTCCTCTGACGTACGGC 59.897 66.667 21.06 18.72 0.00 5.68
64 65 3.736482 CTCCTCTGACGTACGGCGC 62.736 68.421 21.06 0.00 46.11 6.53
65 66 4.111016 CCTCTGACGTACGGCGCA 62.111 66.667 21.06 13.22 46.11 6.09
66 67 2.874780 CTCTGACGTACGGCGCAC 60.875 66.667 21.06 2.50 46.11 5.34
67 68 3.604494 CTCTGACGTACGGCGCACA 62.604 63.158 21.06 10.11 46.11 4.57
68 69 3.467119 CTGACGTACGGCGCACAC 61.467 66.667 21.06 2.00 46.11 3.82
73 74 4.054455 GTACGGCGCACACGTGTG 62.054 66.667 38.01 38.01 45.20 3.82
81 82 3.918977 CACACGTGTGGACCCGGA 61.919 66.667 35.65 0.00 42.10 5.14
82 83 3.920196 ACACGTGTGGACCCGGAC 61.920 66.667 22.71 0.00 34.19 4.79
83 84 4.675029 CACGTGTGGACCCGGACC 62.675 72.222 7.58 6.89 0.00 4.46
105 106 3.041940 CGTCAGTGGCCCAACGTC 61.042 66.667 0.00 0.00 0.00 4.34
106 107 2.110213 GTCAGTGGCCCAACGTCA 59.890 61.111 0.00 0.00 0.00 4.35
107 108 1.961277 GTCAGTGGCCCAACGTCAG 60.961 63.158 0.00 0.00 0.00 3.51
108 109 2.669569 CAGTGGCCCAACGTCAGG 60.670 66.667 0.00 0.00 0.00 3.86
109 110 3.168528 AGTGGCCCAACGTCAGGT 61.169 61.111 0.00 0.00 0.00 4.00
110 111 2.978010 GTGGCCCAACGTCAGGTG 60.978 66.667 0.00 0.00 34.07 4.00
116 117 2.340809 CAACGTCAGGTGGCCGTA 59.659 61.111 0.00 0.00 33.88 4.02
117 118 2.025418 CAACGTCAGGTGGCCGTAC 61.025 63.158 0.00 0.00 33.88 3.67
118 119 3.562779 AACGTCAGGTGGCCGTACG 62.563 63.158 8.69 8.69 40.48 3.67
119 120 4.047059 CGTCAGGTGGCCGTACGT 62.047 66.667 15.21 0.00 33.91 3.57
120 121 2.126189 GTCAGGTGGCCGTACGTC 60.126 66.667 15.21 0.00 0.00 4.34
121 122 2.598099 TCAGGTGGCCGTACGTCA 60.598 61.111 15.21 9.40 0.00 4.35
122 123 2.126071 CAGGTGGCCGTACGTCAG 60.126 66.667 15.21 0.00 0.00 3.51
123 124 3.379445 AGGTGGCCGTACGTCAGG 61.379 66.667 15.21 0.00 0.00 3.86
124 125 4.446413 GGTGGCCGTACGTCAGGG 62.446 72.222 15.21 0.00 35.13 4.45
125 126 4.446413 GTGGCCGTACGTCAGGGG 62.446 72.222 15.21 0.00 32.45 4.79
126 127 4.682334 TGGCCGTACGTCAGGGGA 62.682 66.667 15.21 0.00 32.45 4.81
127 128 3.152400 GGCCGTACGTCAGGGGAT 61.152 66.667 15.21 0.00 32.45 3.85
128 129 2.416260 GCCGTACGTCAGGGGATC 59.584 66.667 15.21 0.00 32.45 3.36
129 130 3.126528 CCGTACGTCAGGGGATCC 58.873 66.667 15.21 1.92 0.00 3.36
130 131 2.719979 CGTACGTCAGGGGATCCG 59.280 66.667 7.22 0.00 38.33 4.18
131 132 2.842256 CGTACGTCAGGGGATCCGG 61.842 68.421 7.22 0.00 38.33 5.14
132 133 2.836360 TACGTCAGGGGATCCGGC 60.836 66.667 5.45 0.00 38.33 6.13
133 134 3.369410 TACGTCAGGGGATCCGGCT 62.369 63.158 5.45 0.00 38.33 5.52
134 135 3.917760 CGTCAGGGGATCCGGCTC 61.918 72.222 5.45 0.00 38.33 4.70
143 144 1.152881 GATCCGGCTCCCAGCAAAT 60.153 57.895 0.00 0.00 44.75 2.32
154 155 4.698575 CTCCCAGCAAATAAGGAGTAGAC 58.301 47.826 0.00 0.00 40.91 2.59
175 176 1.272147 GGCAACAGAAACAGGGGAGAT 60.272 52.381 0.00 0.00 0.00 2.75
366 387 4.178956 ACAGCTACAAAAGAAAAGGGGA 57.821 40.909 0.00 0.00 0.00 4.81
496 527 3.336676 TCTTTTCTCCCCTTCCTTCCTT 58.663 45.455 0.00 0.00 0.00 3.36
497 528 3.330998 TCTTTTCTCCCCTTCCTTCCTTC 59.669 47.826 0.00 0.00 0.00 3.46
498 529 1.670059 TTCTCCCCTTCCTTCCTTCC 58.330 55.000 0.00 0.00 0.00 3.46
499 530 0.800239 TCTCCCCTTCCTTCCTTCCT 59.200 55.000 0.00 0.00 0.00 3.36
500 531 2.016096 TCTCCCCTTCCTTCCTTCCTA 58.984 52.381 0.00 0.00 0.00 2.94
501 532 2.022918 TCTCCCCTTCCTTCCTTCCTAG 60.023 54.545 0.00 0.00 0.00 3.02
502 533 0.840617 CCCCTTCCTTCCTTCCTAGC 59.159 60.000 0.00 0.00 0.00 3.42
508 541 0.179936 CCTTCCTTCCTAGCAGCAGG 59.820 60.000 0.00 0.00 37.00 4.85
531 564 2.595463 CCAGCCAGTGGTGTGGTG 60.595 66.667 19.68 6.87 42.17 4.17
532 565 2.595463 CAGCCAGTGGTGTGGTGG 60.595 66.667 11.74 0.00 40.09 4.61
533 566 3.096495 AGCCAGTGGTGTGGTGGT 61.096 61.111 11.74 0.00 40.09 4.16
534 567 2.906897 GCCAGTGGTGTGGTGGTG 60.907 66.667 11.74 0.00 40.09 4.17
535 568 2.906897 CCAGTGGTGTGGTGGTGC 60.907 66.667 0.00 0.00 32.32 5.01
536 569 2.906897 CAGTGGTGTGGTGGTGCC 60.907 66.667 0.00 0.00 37.90 5.01
537 570 4.204028 AGTGGTGTGGTGGTGCCC 62.204 66.667 0.00 0.00 36.04 5.36
541 574 4.218686 GTGTGGTGGTGCCCCCTT 62.219 66.667 0.00 0.00 36.04 3.95
655 688 4.247380 CCTGCTCTGATCCGCCCC 62.247 72.222 0.00 0.00 0.00 5.80
656 689 3.160047 CTGCTCTGATCCGCCCCT 61.160 66.667 0.00 0.00 0.00 4.79
823 873 3.941188 CGTGGTGTGGAGCCAGGT 61.941 66.667 0.00 0.00 37.18 4.00
824 874 2.515901 GTGGTGTGGAGCCAGGTT 59.484 61.111 0.00 0.00 36.57 3.50
825 875 1.600916 GTGGTGTGGAGCCAGGTTC 60.601 63.158 0.00 0.00 36.57 3.62
826 876 2.034221 GGTGTGGAGCCAGGTTCC 59.966 66.667 15.60 15.60 33.44 3.62
827 877 2.529744 GGTGTGGAGCCAGGTTCCT 61.530 63.158 22.26 0.00 33.98 3.36
828 878 1.456287 GTGTGGAGCCAGGTTCCTT 59.544 57.895 22.26 0.00 33.98 3.36
829 879 0.690762 GTGTGGAGCCAGGTTCCTTA 59.309 55.000 22.26 9.14 33.98 2.69
830 880 0.690762 TGTGGAGCCAGGTTCCTTAC 59.309 55.000 22.26 13.79 33.98 2.34
843 893 4.415846 AGGTTCCTTACTTCCTTTCTTGGT 59.584 41.667 0.00 0.00 0.00 3.67
845 895 5.374071 GTTCCTTACTTCCTTTCTTGGTGA 58.626 41.667 0.00 0.00 0.00 4.02
906 956 1.370587 GAGACTCTCTGACGACCCGG 61.371 65.000 0.00 0.00 0.00 5.73
935 988 1.202348 CGTTTCTGGGGGAAATTCTGC 59.798 52.381 0.00 0.00 44.46 4.26
1552 1621 4.452825 CAAGGTCCGATACTCACTCTCTA 58.547 47.826 0.00 0.00 0.00 2.43
1563 1632 0.105039 CACTCTCTAACGCCATCCCC 59.895 60.000 0.00 0.00 0.00 4.81
1564 1633 0.325296 ACTCTCTAACGCCATCCCCA 60.325 55.000 0.00 0.00 0.00 4.96
1589 1659 2.440796 CCCTCGCCATTGCCATGT 60.441 61.111 0.00 0.00 0.00 3.21
1647 1719 4.023963 CGATTCAGTCTCTTGCCGTCTATA 60.024 45.833 0.00 0.00 0.00 1.31
1661 1733 2.414481 CGTCTATATTCAGCTGCATGCC 59.586 50.000 16.68 0.00 44.23 4.40
1696 1768 5.073478 CACTTCTTTTTCTACGCGTGATTC 58.927 41.667 24.59 0.00 0.00 2.52
1800 1873 2.317040 TCTCGACTTCTCCAGGTGTTT 58.683 47.619 0.00 0.00 0.00 2.83
1878 1953 2.328639 GGATCCGTCGAGCTCGTC 59.671 66.667 33.33 27.13 40.80 4.20
1885 1960 1.467556 CGTCGAGCTCGTCTTGCATC 61.468 60.000 33.33 14.16 40.80 3.91
1908 1993 4.267536 TGTGCTAGTCCTATCAACTACGT 58.732 43.478 0.00 0.00 0.00 3.57
1909 1994 5.430886 TGTGCTAGTCCTATCAACTACGTA 58.569 41.667 0.00 0.00 0.00 3.57
1910 1995 6.060136 TGTGCTAGTCCTATCAACTACGTAT 58.940 40.000 0.00 0.00 0.00 3.06
1911 1996 6.544931 TGTGCTAGTCCTATCAACTACGTATT 59.455 38.462 0.00 0.00 0.00 1.89
1912 1997 7.076983 GTGCTAGTCCTATCAACTACGTATTC 58.923 42.308 0.00 0.00 0.00 1.75
1913 1998 6.073385 TGCTAGTCCTATCAACTACGTATTCG 60.073 42.308 0.00 0.00 43.34 3.34
2174 2266 1.305297 AGATGGTCACCGAGCTCCA 60.305 57.895 8.47 0.00 0.00 3.86
2187 2279 2.676176 CGAGCTCCACATGTCAATGTCT 60.676 50.000 8.47 0.00 45.50 3.41
2198 2292 6.312426 CACATGTCAATGTCTTCTACTCTTCC 59.688 42.308 0.00 0.00 45.50 3.46
2209 2303 8.962679 TGTCTTCTACTCTTCCTATCTTCTTTC 58.037 37.037 0.00 0.00 0.00 2.62
2210 2304 8.410912 GTCTTCTACTCTTCCTATCTTCTTTCC 58.589 40.741 0.00 0.00 0.00 3.13
2211 2305 8.340757 TCTTCTACTCTTCCTATCTTCTTTCCT 58.659 37.037 0.00 0.00 0.00 3.36
2212 2306 8.528044 TTCTACTCTTCCTATCTTCTTTCCTC 57.472 38.462 0.00 0.00 0.00 3.71
2222 2316 2.907042 TCTTCTTTCCTCCCTCACCTTC 59.093 50.000 0.00 0.00 0.00 3.46
2224 2318 0.250513 CTTTCCTCCCTCACCTTCCG 59.749 60.000 0.00 0.00 0.00 4.30
2273 2380 1.200948 GATCTGCAGGCCAAAAGTGAC 59.799 52.381 15.13 0.00 0.00 3.67
2457 2564 0.038067 TTCCATGTGCATGTGCTTGC 60.038 50.000 10.76 3.50 42.66 4.01
2481 2588 4.122776 CTCTACCAATCGTAGCAATGCTT 58.877 43.478 14.85 0.00 43.72 3.91
2538 2645 0.175302 AGAAGATGAGCTCACTGGCG 59.825 55.000 20.97 0.00 37.29 5.69
2700 2810 7.040478 GGTGCCTATAATTGATCACTTATTGCA 60.040 37.037 23.72 23.72 0.00 4.08
2701 2811 7.805071 GTGCCTATAATTGATCACTTATTGCAC 59.195 37.037 30.52 30.52 36.94 4.57
2723 2833 1.625315 TCTAGTGCACTGCTGGACAAT 59.375 47.619 29.57 0.97 41.12 2.71
2985 3096 9.620660 GTTAGTTGTTATTCCAAAACCATACAG 57.379 33.333 0.00 0.00 0.00 2.74
3031 3142 2.860009 TCTAGTCTCACCAAGTGACGT 58.140 47.619 0.00 0.00 43.66 4.34
3035 3146 0.821517 TCTCACCAAGTGACGTGTGT 59.178 50.000 0.00 0.00 37.67 3.72
3096 3207 6.150140 GCTGTTTTCTAGTCTCACCAAATGAT 59.850 38.462 0.00 0.00 36.48 2.45
3289 3400 3.495001 GGTCCTTTTCAGTTCTGTCTTCG 59.505 47.826 0.00 0.00 0.00 3.79
3302 3413 3.740832 TCTGTCTTCGTATGTTGTTGCAG 59.259 43.478 0.00 0.00 0.00 4.41
3329 3440 7.494952 TGCATGAGATTCTTGTTCTTCTCTATG 59.505 37.037 0.00 0.00 36.43 2.23
3504 3615 1.538419 GCGAGGTACAATCCTACCAGC 60.538 57.143 0.00 0.33 39.05 4.85
3554 3665 6.558775 TGATTATATCTGCTGGGGTTCTAACT 59.441 38.462 0.00 0.00 0.00 2.24
3560 3671 4.838986 TCTGCTGGGGTTCTAACTATATCC 59.161 45.833 0.00 0.00 0.00 2.59
3566 3677 7.180408 GCTGGGGTTCTAACTATATCCAATCTA 59.820 40.741 0.00 0.00 0.00 1.98
3695 3806 6.004574 GGATCTGAAACCAGAGGTTAGTTTT 58.995 40.000 1.26 0.00 46.20 2.43
3732 3843 9.746711 GTTAGCAGCTAATATTAATTCATCGTG 57.253 33.333 18.00 0.00 0.00 4.35
3772 3883 8.487028 ACTATTATCAACCTGGGAGTTTCTTAG 58.513 37.037 0.00 0.00 0.00 2.18
3883 4001 9.593134 TTTGCAACTAAATACATTTGTGTTTCT 57.407 25.926 0.00 0.00 39.50 2.52
4103 4221 1.674359 ACGACATTGTTGGAAGTGCA 58.326 45.000 8.87 0.00 0.00 4.57
4199 4317 3.573967 CCTACATTTTGCTTTGTGGGAGT 59.426 43.478 0.00 0.00 44.69 3.85
4268 4386 1.029681 AGGCGGAACCAAGTTTTGAC 58.970 50.000 0.00 0.00 43.14 3.18
4415 4533 2.223758 GCCGTACAGTAATGTCCTCCTC 60.224 54.545 0.00 0.00 0.00 3.71
4432 4550 5.014755 TCCTCCTCAGGAAGACTATATCCTC 59.985 48.000 0.00 0.00 46.84 3.71
4611 4729 7.612065 TGAGGGTATACACTATGCACTTAAT 57.388 36.000 7.86 0.00 34.53 1.40
4805 4930 9.899661 TTATATAGGACAAGTTTGCACAGTTAT 57.100 29.630 0.00 0.00 0.00 1.89
4820 4945 5.006746 GCACAGTTATGTAGGTTCATAGCAC 59.993 44.000 0.00 0.00 37.65 4.40
4823 4948 7.435488 CACAGTTATGTAGGTTCATAGCACTAC 59.565 40.741 0.00 0.00 37.65 2.73
4865 4990 4.660789 ACCAATGAGCCATTTCTTATGC 57.339 40.909 0.00 0.00 31.05 3.14
4974 5099 5.468746 TCCAAACAAGAGTGGTTTTATCTCG 59.531 40.000 0.00 0.00 36.38 4.04
5038 5163 7.606073 TCATTTAGTCTAGTTTACAGCATGCAA 59.394 33.333 21.98 2.08 42.53 4.08
5085 5210 3.820293 GCAGGCTCTGGTGAAGAATTCG 61.820 54.545 0.00 0.00 38.95 3.34
5136 5261 6.930667 ATTGACTTTGTTAACACGGTAAGT 57.069 33.333 18.73 18.73 0.00 2.24
5338 5463 3.081133 CGCGCGTATGAGCTGTTT 58.919 55.556 24.19 0.00 38.95 2.83
5387 5512 1.200716 TCGAAGAACTTGCGTCGGTAT 59.799 47.619 0.00 0.00 39.62 2.73
5409 5534 5.697473 TGAGTCTGAACTGTAGTCTGAAG 57.303 43.478 0.00 0.00 35.28 3.02
5731 5861 1.228245 TGTTTGAGGTGGCTGGAGC 60.228 57.895 0.00 0.00 41.14 4.70
5751 5881 2.434185 GACGATGGCTTGCGACCA 60.434 61.111 0.00 0.00 42.61 4.02
5822 5955 9.131791 AGAAGATAAAAAGAAGGTTGTTGCTTA 57.868 29.630 0.00 0.00 0.00 3.09
5867 6000 6.043411 AGTAGCTATTAGTGCTTGCTTGTAC 58.957 40.000 0.00 0.00 41.46 2.90
5871 6004 0.326927 TAGTGCTTGCTTGTACCCCC 59.673 55.000 0.00 0.00 0.00 5.40
5872 6005 1.074951 GTGCTTGCTTGTACCCCCT 59.925 57.895 0.00 0.00 0.00 4.79
5875 6008 1.303282 CTTGCTTGTACCCCCTCCC 59.697 63.158 0.00 0.00 0.00 4.30
5876 6009 1.151677 TTGCTTGTACCCCCTCCCT 60.152 57.895 0.00 0.00 0.00 4.20
5982 6263 7.065504 AGAATATGAATTGAAAGGGCTTAGCT 58.934 34.615 3.59 0.00 0.00 3.32
5983 6264 4.996788 ATGAATTGAAAGGGCTTAGCTG 57.003 40.909 3.59 0.00 0.00 4.24
5984 6265 2.493278 TGAATTGAAAGGGCTTAGCTGC 59.507 45.455 3.59 0.00 0.00 5.25
6033 6317 2.295349 GGTTGTCGTCAGTGTCCTTCTA 59.705 50.000 0.00 0.00 0.00 2.10
6103 6395 2.648059 CCAAGAGAAGCCCTGGTTATG 58.352 52.381 0.00 0.00 0.00 1.90
6104 6396 2.648059 CAAGAGAAGCCCTGGTTATGG 58.352 52.381 0.00 0.00 0.00 2.74
6105 6397 2.239654 CAAGAGAAGCCCTGGTTATGGA 59.760 50.000 0.00 0.00 0.00 3.41
6106 6398 2.122768 AGAGAAGCCCTGGTTATGGAG 58.877 52.381 0.00 0.00 0.00 3.86
6108 6400 2.239907 GAGAAGCCCTGGTTATGGAGTT 59.760 50.000 0.00 0.00 0.00 3.01
6110 6402 3.076032 AGAAGCCCTGGTTATGGAGTTTT 59.924 43.478 0.00 0.00 0.00 2.43
6111 6403 3.542969 AGCCCTGGTTATGGAGTTTTT 57.457 42.857 0.00 0.00 0.00 1.94
6173 8500 4.521146 AGGATCTTGATTGTGGATGTGTC 58.479 43.478 0.00 0.00 0.00 3.67
6190 8517 7.928167 TGGATGTGTCTCTTATTATGCAAGTAG 59.072 37.037 0.00 0.00 0.00 2.57
6196 8523 7.764443 TGTCTCTTATTATGCAAGTAGTGGTTC 59.236 37.037 0.00 0.00 0.00 3.62
6199 8526 8.492673 TCTTATTATGCAAGTAGTGGTTCTTG 57.507 34.615 0.00 0.00 42.44 3.02
6223 8550 4.096231 TGTGTATGTGATGCAAGTAATGGC 59.904 41.667 0.00 0.00 0.00 4.40
6224 8551 3.631686 TGTATGTGATGCAAGTAATGGCC 59.368 43.478 0.00 0.00 0.00 5.36
6225 8552 1.473258 TGTGATGCAAGTAATGGCCC 58.527 50.000 0.00 0.00 0.00 5.80
6226 8553 1.005805 TGTGATGCAAGTAATGGCCCT 59.994 47.619 0.00 0.00 0.00 5.19
6227 8554 2.102578 GTGATGCAAGTAATGGCCCTT 58.897 47.619 0.00 0.00 0.00 3.95
6228 8555 3.287222 GTGATGCAAGTAATGGCCCTTA 58.713 45.455 0.00 0.00 0.00 2.69
6234 8561 3.023832 CAAGTAATGGCCCTTACCCTTG 58.976 50.000 22.82 18.15 33.02 3.61
6249 8576 1.463674 CCTTGTGCCTATGACCAACC 58.536 55.000 0.00 0.00 0.00 3.77
6254 8581 1.252215 TGCCTATGACCAACCGACGA 61.252 55.000 0.00 0.00 0.00 4.20
6274 8605 4.109766 CGAATGCATGCATGATTCAGTTT 58.890 39.130 32.79 15.22 36.68 2.66
6275 8606 5.163632 ACGAATGCATGCATGATTCAGTTTA 60.164 36.000 32.79 0.32 36.68 2.01
6278 8609 3.040795 GCATGCATGATTCAGTTTAGCG 58.959 45.455 30.64 0.00 0.00 4.26
6284 8615 4.332819 GCATGATTCAGTTTAGCGGTAGTT 59.667 41.667 0.00 0.00 0.00 2.24
6301 8632 2.627945 AGTTTGCTCGTGTGTTTCTCA 58.372 42.857 0.00 0.00 0.00 3.27
6303 8634 3.002656 AGTTTGCTCGTGTGTTTCTCATG 59.997 43.478 0.00 0.00 0.00 3.07
6304 8635 2.238942 TGCTCGTGTGTTTCTCATGT 57.761 45.000 0.00 0.00 0.00 3.21
6322 8655 1.956477 TGTTTTCAGAAGGCTCCTTGC 59.044 47.619 5.80 0.00 36.26 4.01
6366 8699 6.182507 ACTGTGGTATGAACAGAAAGGTTA 57.817 37.500 10.35 0.00 46.55 2.85
6407 8741 0.969149 GAAGGGGTTGCCTCAAAAGG 59.031 55.000 0.00 0.00 46.44 3.11
6435 8769 0.031994 AGGCGTCAAATGTTGCAACC 59.968 50.000 26.14 7.95 0.00 3.77
6468 8802 0.770499 TTGCAAGGATCCAGTGGTCA 59.230 50.000 15.82 3.33 0.00 4.02
6471 8805 2.092968 TGCAAGGATCCAGTGGTCATAC 60.093 50.000 15.82 0.00 0.00 2.39
6472 8806 2.826428 CAAGGATCCAGTGGTCATACG 58.174 52.381 15.82 0.00 0.00 3.06
6473 8807 2.160721 AGGATCCAGTGGTCATACGT 57.839 50.000 15.82 0.00 0.00 3.57
6474 8808 1.757118 AGGATCCAGTGGTCATACGTG 59.243 52.381 15.82 0.00 0.00 4.49
6475 8809 1.480954 GGATCCAGTGGTCATACGTGT 59.519 52.381 9.54 0.00 0.00 4.49
6476 8810 2.093658 GGATCCAGTGGTCATACGTGTT 60.094 50.000 9.54 0.00 0.00 3.32
6477 8811 2.736144 TCCAGTGGTCATACGTGTTC 57.264 50.000 9.54 0.00 0.00 3.18
6478 8812 1.068125 TCCAGTGGTCATACGTGTTCG 60.068 52.381 9.54 0.00 43.34 3.95
6494 8828 3.147313 TCGTACACGAACACGTCAC 57.853 52.632 1.21 0.00 46.30 3.67
6495 8829 0.316937 TCGTACACGAACACGTCACC 60.317 55.000 1.21 0.00 46.30 4.02
6496 8830 1.590855 CGTACACGAACACGTCACCG 61.591 60.000 0.00 0.00 43.02 4.94
6508 8842 1.625616 CGTCACCGTGTATCTCCAAC 58.374 55.000 0.00 0.00 0.00 3.77
6509 8843 1.068125 CGTCACCGTGTATCTCCAACA 60.068 52.381 0.00 0.00 0.00 3.33
6510 8844 2.334838 GTCACCGTGTATCTCCAACAC 58.665 52.381 0.00 0.00 43.04 3.32
6511 8845 1.274167 TCACCGTGTATCTCCAACACC 59.726 52.381 0.00 0.00 43.46 4.16
6512 8846 0.245539 ACCGTGTATCTCCAACACCG 59.754 55.000 1.11 0.00 43.46 4.94
6513 8847 0.528924 CCGTGTATCTCCAACACCGA 59.471 55.000 1.11 0.00 43.46 4.69
6514 8848 1.469251 CCGTGTATCTCCAACACCGAG 60.469 57.143 1.11 0.00 43.46 4.63
6515 8849 1.469251 CGTGTATCTCCAACACCGAGG 60.469 57.143 1.11 0.00 43.46 4.63
6516 8850 1.134788 GTGTATCTCCAACACCGAGGG 60.135 57.143 0.00 0.00 41.10 4.30
6517 8851 1.192428 GTATCTCCAACACCGAGGGT 58.808 55.000 0.00 0.00 35.62 4.34
6532 8866 3.503363 GGTGATGCACCGCAGCTC 61.503 66.667 5.76 1.79 45.80 4.09
6533 8867 2.743538 GTGATGCACCGCAGCTCA 60.744 61.111 5.76 0.00 45.80 4.26
6534 8868 2.743538 TGATGCACCGCAGCTCAC 60.744 61.111 5.76 0.00 45.80 3.51
6535 8869 3.857854 GATGCACCGCAGCTCACG 61.858 66.667 0.00 0.00 43.65 4.35
6536 8870 4.687215 ATGCACCGCAGCTCACGT 62.687 61.111 5.06 0.00 43.65 4.49
6539 8873 4.700365 CACCGCAGCTCACGTCGA 62.700 66.667 0.00 0.00 0.00 4.20
6540 8874 3.973516 ACCGCAGCTCACGTCGAA 61.974 61.111 0.00 0.00 0.00 3.71
6541 8875 3.175240 CCGCAGCTCACGTCGAAG 61.175 66.667 0.00 0.00 0.00 3.79
6542 8876 3.175240 CGCAGCTCACGTCGAAGG 61.175 66.667 0.00 0.00 0.00 3.46
6543 8877 2.258591 GCAGCTCACGTCGAAGGA 59.741 61.111 0.00 0.00 0.00 3.36
6544 8878 1.803519 GCAGCTCACGTCGAAGGAG 60.804 63.158 0.00 7.74 0.00 3.69
6545 8879 1.153939 CAGCTCACGTCGAAGGAGG 60.154 63.158 14.85 1.19 0.00 4.30
6546 8880 2.507324 GCTCACGTCGAAGGAGGC 60.507 66.667 14.85 7.23 0.00 4.70
6547 8881 2.182030 CTCACGTCGAAGGAGGCC 59.818 66.667 0.00 0.00 0.00 5.19
6548 8882 2.282958 TCACGTCGAAGGAGGCCT 60.283 61.111 3.86 3.86 33.87 5.19
6549 8883 2.125912 CACGTCGAAGGAGGCCTG 60.126 66.667 12.00 0.00 32.13 4.85
6550 8884 2.600769 ACGTCGAAGGAGGCCTGT 60.601 61.111 12.00 0.00 32.13 4.00
6551 8885 2.182030 CGTCGAAGGAGGCCTGTC 59.818 66.667 12.00 3.39 32.13 3.51
6552 8886 2.579738 GTCGAAGGAGGCCTGTCC 59.420 66.667 12.00 6.42 32.13 4.02
6553 8887 3.068691 TCGAAGGAGGCCTGTCCG 61.069 66.667 12.00 8.67 42.05 4.79
6554 8888 4.148825 CGAAGGAGGCCTGTCCGG 62.149 72.222 12.00 0.00 42.05 5.14
6555 8889 2.683933 GAAGGAGGCCTGTCCGGA 60.684 66.667 12.00 0.00 42.05 5.14
6556 8890 2.203938 AAGGAGGCCTGTCCGGAA 60.204 61.111 12.00 0.00 42.05 4.30
6557 8891 2.245438 GAAGGAGGCCTGTCCGGAAG 62.245 65.000 12.00 6.17 42.05 3.46
6558 8892 4.475135 GGAGGCCTGTCCGGAAGC 62.475 72.222 12.00 10.09 40.77 3.86
6559 8893 4.821589 GAGGCCTGTCCGGAAGCG 62.822 72.222 12.00 0.00 40.77 4.68
6563 8897 4.003788 CCTGTCCGGAAGCGTGGT 62.004 66.667 5.23 0.00 33.16 4.16
6564 8898 2.642254 CCTGTCCGGAAGCGTGGTA 61.642 63.158 5.23 0.00 33.16 3.25
6565 8899 1.445582 CTGTCCGGAAGCGTGGTAC 60.446 63.158 5.23 0.00 0.00 3.34
6566 8900 2.149803 CTGTCCGGAAGCGTGGTACA 62.150 60.000 5.23 0.00 0.00 2.90
6567 8901 1.217244 GTCCGGAAGCGTGGTACAT 59.783 57.895 5.23 0.00 44.52 2.29
6568 8902 0.457035 GTCCGGAAGCGTGGTACATA 59.543 55.000 5.23 0.00 44.52 2.29
6569 8903 1.135024 GTCCGGAAGCGTGGTACATAA 60.135 52.381 5.23 0.00 44.52 1.90
6570 8904 1.135527 TCCGGAAGCGTGGTACATAAG 59.864 52.381 0.00 0.00 44.52 1.73
6571 8905 0.928229 CGGAAGCGTGGTACATAAGC 59.072 55.000 0.00 0.00 44.52 3.09
6572 8906 1.737696 CGGAAGCGTGGTACATAAGCA 60.738 52.381 9.23 0.00 44.52 3.91
6573 8907 2.352388 GGAAGCGTGGTACATAAGCAA 58.648 47.619 9.23 0.00 44.52 3.91
6574 8908 2.745281 GGAAGCGTGGTACATAAGCAAA 59.255 45.455 9.23 0.00 44.52 3.68
6575 8909 3.425758 GGAAGCGTGGTACATAAGCAAAC 60.426 47.826 9.23 2.00 44.52 2.93
6576 8910 2.081462 AGCGTGGTACATAAGCAAACC 58.919 47.619 9.23 0.00 44.52 3.27
6577 8911 1.201987 GCGTGGTACATAAGCAAACCG 60.202 52.381 0.00 0.00 44.52 4.44
6578 8912 1.395608 CGTGGTACATAAGCAAACCGG 59.604 52.381 0.00 0.00 44.52 5.28
6579 8913 1.131693 GTGGTACATAAGCAAACCGGC 59.868 52.381 0.00 0.00 44.52 6.13
6580 8914 0.375803 GGTACATAAGCAAACCGGCG 59.624 55.000 0.00 0.00 39.27 6.46
6581 8915 0.375803 GTACATAAGCAAACCGGCGG 59.624 55.000 27.06 27.06 39.27 6.13
6582 8916 0.745128 TACATAAGCAAACCGGCGGG 60.745 55.000 31.78 13.97 39.27 6.13
6583 8917 3.138128 ATAAGCAAACCGGCGGGC 61.138 61.111 31.78 23.57 39.27 6.13
6596 8930 4.404654 CGGGCGCTTTTGAGCACC 62.405 66.667 7.64 0.00 46.13 5.01
6599 8933 3.353836 GCGCTTTTGAGCACCCGA 61.354 61.111 0.00 0.00 44.77 5.14
6600 8934 2.903547 GCGCTTTTGAGCACCCGAA 61.904 57.895 0.00 0.00 44.77 4.30
6601 8935 1.652012 CGCTTTTGAGCACCCGAAA 59.348 52.632 0.00 0.00 34.41 3.46
6602 8936 0.660300 CGCTTTTGAGCACCCGAAAC 60.660 55.000 0.00 0.00 34.41 2.78
6603 8937 0.318699 GCTTTTGAGCACCCGAAACC 60.319 55.000 0.00 0.00 34.41 3.27
6604 8938 0.313987 CTTTTGAGCACCCGAAACCC 59.686 55.000 0.00 0.00 0.00 4.11
6605 8939 1.110518 TTTTGAGCACCCGAAACCCC 61.111 55.000 0.00 0.00 0.00 4.95
6606 8940 2.285889 TTTGAGCACCCGAAACCCCA 62.286 55.000 0.00 0.00 0.00 4.96
6607 8941 2.671963 GAGCACCCGAAACCCCAC 60.672 66.667 0.00 0.00 0.00 4.61
6608 8942 4.636435 AGCACCCGAAACCCCACG 62.636 66.667 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.780924 ACCACCAGGGCAAGGGAA 60.781 61.111 0.00 0.00 42.05 3.97
1 2 3.579302 CACCACCAGGGCAAGGGA 61.579 66.667 0.00 0.00 42.05 4.20
2 3 4.684134 CCACCACCAGGGCAAGGG 62.684 72.222 0.00 0.00 42.05 3.95
3 4 3.574074 CTCCACCACCAGGGCAAGG 62.574 68.421 0.00 0.00 42.05 3.61
4 5 2.034687 CTCCACCACCAGGGCAAG 59.965 66.667 0.00 0.00 42.05 4.01
5 6 2.776526 ACTCCACCACCAGGGCAA 60.777 61.111 0.00 0.00 42.05 4.52
6 7 3.569210 CACTCCACCACCAGGGCA 61.569 66.667 0.00 0.00 42.05 5.36
7 8 4.351054 CCACTCCACCACCAGGGC 62.351 72.222 0.00 0.00 42.05 5.19
8 9 2.854032 ACCACTCCACCACCAGGG 60.854 66.667 0.00 0.00 44.81 4.45
9 10 2.146724 TCACCACTCCACCACCAGG 61.147 63.158 0.00 0.00 42.21 4.45
10 11 1.071471 GTCACCACTCCACCACCAG 59.929 63.158 0.00 0.00 0.00 4.00
11 12 2.448582 GGTCACCACTCCACCACCA 61.449 63.158 0.00 0.00 0.00 4.17
12 13 2.397413 CTGGTCACCACTCCACCACC 62.397 65.000 0.00 0.00 35.16 4.61
13 14 1.071471 CTGGTCACCACTCCACCAC 59.929 63.158 0.00 0.00 35.16 4.16
14 15 2.818169 GCTGGTCACCACTCCACCA 61.818 63.158 0.00 0.00 37.89 4.17
15 16 2.032681 GCTGGTCACCACTCCACC 59.967 66.667 0.00 0.00 0.00 4.61
16 17 0.465460 TTTGCTGGTCACCACTCCAC 60.465 55.000 0.00 0.00 0.00 4.02
17 18 0.465460 GTTTGCTGGTCACCACTCCA 60.465 55.000 0.00 0.00 0.00 3.86
18 19 0.465460 TGTTTGCTGGTCACCACTCC 60.465 55.000 0.00 0.00 0.00 3.85
19 20 0.947244 CTGTTTGCTGGTCACCACTC 59.053 55.000 0.00 0.00 0.00 3.51
20 21 0.466189 CCTGTTTGCTGGTCACCACT 60.466 55.000 0.00 0.00 0.00 4.00
21 22 0.465460 TCCTGTTTGCTGGTCACCAC 60.465 55.000 0.00 0.00 35.49 4.16
22 23 0.465460 GTCCTGTTTGCTGGTCACCA 60.465 55.000 0.00 0.00 35.49 4.17
23 24 0.465460 TGTCCTGTTTGCTGGTCACC 60.465 55.000 0.00 0.00 35.49 4.02
24 25 0.663153 GTGTCCTGTTTGCTGGTCAC 59.337 55.000 5.54 5.54 41.96 3.67
25 26 0.254462 TGTGTCCTGTTTGCTGGTCA 59.746 50.000 0.00 0.00 35.49 4.02
26 27 0.947244 CTGTGTCCTGTTTGCTGGTC 59.053 55.000 0.00 0.00 35.49 4.02
27 28 1.103398 GCTGTGTCCTGTTTGCTGGT 61.103 55.000 0.00 0.00 35.49 4.00
28 29 0.820891 AGCTGTGTCCTGTTTGCTGG 60.821 55.000 0.00 0.00 35.32 4.85
29 30 0.590195 GAGCTGTGTCCTGTTTGCTG 59.410 55.000 0.00 0.00 0.00 4.41
30 31 0.536006 GGAGCTGTGTCCTGTTTGCT 60.536 55.000 0.00 0.00 33.30 3.91
31 32 0.536006 AGGAGCTGTGTCCTGTTTGC 60.536 55.000 0.00 0.00 45.91 3.68
32 33 3.713902 AGGAGCTGTGTCCTGTTTG 57.286 52.632 0.00 0.00 45.91 2.93
38 39 1.214062 CGTCAGAGGAGCTGTGTCC 59.786 63.158 0.00 0.00 45.14 4.02
39 40 1.135632 GTACGTCAGAGGAGCTGTGTC 60.136 57.143 0.00 0.00 45.14 3.67
40 41 0.882474 GTACGTCAGAGGAGCTGTGT 59.118 55.000 0.00 0.00 45.14 3.72
41 42 0.179187 CGTACGTCAGAGGAGCTGTG 60.179 60.000 7.22 0.00 45.14 3.66
42 43 1.306642 CCGTACGTCAGAGGAGCTGT 61.307 60.000 15.21 0.00 45.14 4.40
43 44 1.429825 CCGTACGTCAGAGGAGCTG 59.570 63.158 15.21 0.00 46.31 4.24
44 45 2.408241 GCCGTACGTCAGAGGAGCT 61.408 63.158 15.21 0.00 0.00 4.09
45 46 2.102553 GCCGTACGTCAGAGGAGC 59.897 66.667 15.21 3.74 0.00 4.70
46 47 2.403987 CGCCGTACGTCAGAGGAG 59.596 66.667 15.21 0.00 36.87 3.69
47 48 3.807538 GCGCCGTACGTCAGAGGA 61.808 66.667 15.21 0.00 46.11 3.71
48 49 4.111016 TGCGCCGTACGTCAGAGG 62.111 66.667 15.21 0.00 46.11 3.69
49 50 2.874780 GTGCGCCGTACGTCAGAG 60.875 66.667 15.21 1.85 46.11 3.35
50 51 3.662153 TGTGCGCCGTACGTCAGA 61.662 61.111 15.21 4.94 46.11 3.27
51 52 3.467119 GTGTGCGCCGTACGTCAG 61.467 66.667 15.21 6.03 46.11 3.51
56 57 4.054455 CACACGTGTGCGCCGTAC 62.054 66.667 33.52 0.00 42.83 3.67
64 65 3.918977 TCCGGGTCCACACGTGTG 61.919 66.667 36.13 36.13 42.08 3.82
65 66 3.920196 GTCCGGGTCCACACGTGT 61.920 66.667 17.22 17.22 42.08 4.49
66 67 4.675029 GGTCCGGGTCCACACGTG 62.675 72.222 15.48 15.48 42.08 4.49
88 89 3.041940 GACGTTGGGCCACTGACG 61.042 66.667 23.66 23.66 41.00 4.35
89 90 1.961277 CTGACGTTGGGCCACTGAC 60.961 63.158 5.23 0.00 0.00 3.51
90 91 2.425592 CTGACGTTGGGCCACTGA 59.574 61.111 5.23 0.00 0.00 3.41
91 92 2.669569 CCTGACGTTGGGCCACTG 60.670 66.667 5.23 3.70 0.00 3.66
92 93 3.168528 ACCTGACGTTGGGCCACT 61.169 61.111 5.23 0.00 0.00 4.00
93 94 2.978010 CACCTGACGTTGGGCCAC 60.978 66.667 5.23 0.00 0.00 5.01
94 95 4.263572 CCACCTGACGTTGGGCCA 62.264 66.667 0.00 0.00 0.00 5.36
98 99 3.229156 TACGGCCACCTGACGTTGG 62.229 63.158 2.24 6.95 41.53 3.77
99 100 2.025418 GTACGGCCACCTGACGTTG 61.025 63.158 2.24 0.00 41.53 4.10
100 101 2.341176 GTACGGCCACCTGACGTT 59.659 61.111 2.24 0.00 41.53 3.99
101 102 4.047059 CGTACGGCCACCTGACGT 62.047 66.667 7.57 0.00 43.88 4.34
102 103 3.958822 GACGTACGGCCACCTGACG 62.959 68.421 21.06 6.95 36.05 4.35
103 104 2.126189 GACGTACGGCCACCTGAC 60.126 66.667 21.06 0.00 0.00 3.51
104 105 2.598099 TGACGTACGGCCACCTGA 60.598 61.111 20.48 0.00 0.00 3.86
105 106 2.126071 CTGACGTACGGCCACCTG 60.126 66.667 20.48 0.00 0.00 4.00
106 107 3.379445 CCTGACGTACGGCCACCT 61.379 66.667 20.48 0.00 0.00 4.00
107 108 4.446413 CCCTGACGTACGGCCACC 62.446 72.222 20.48 2.90 0.00 4.61
108 109 4.446413 CCCCTGACGTACGGCCAC 62.446 72.222 20.48 7.80 0.00 5.01
109 110 3.968837 ATCCCCTGACGTACGGCCA 62.969 63.158 20.48 14.99 0.00 5.36
110 111 3.148031 GATCCCCTGACGTACGGCC 62.148 68.421 20.48 10.81 0.00 6.13
111 112 2.416260 GATCCCCTGACGTACGGC 59.584 66.667 21.06 18.72 0.00 5.68
112 113 2.842256 CGGATCCCCTGACGTACGG 61.842 68.421 21.06 1.19 0.00 4.02
113 114 2.719979 CGGATCCCCTGACGTACG 59.280 66.667 15.01 15.01 0.00 3.67
114 115 3.126528 CCGGATCCCCTGACGTAC 58.873 66.667 6.06 0.00 0.00 3.67
115 116 2.836360 GCCGGATCCCCTGACGTA 60.836 66.667 5.05 0.00 0.00 3.57
116 117 4.779733 AGCCGGATCCCCTGACGT 62.780 66.667 5.05 0.00 0.00 4.34
117 118 3.917760 GAGCCGGATCCCCTGACG 61.918 72.222 9.02 0.00 0.00 4.35
118 119 3.551407 GGAGCCGGATCCCCTGAC 61.551 72.222 28.96 0.78 32.79 3.51
124 125 2.631012 ATTTGCTGGGAGCCGGATCC 62.631 60.000 31.09 31.09 41.51 3.36
125 126 0.108585 TATTTGCTGGGAGCCGGATC 59.891 55.000 12.38 12.38 41.51 3.36
126 127 0.550914 TTATTTGCTGGGAGCCGGAT 59.449 50.000 5.05 0.00 41.51 4.18
127 128 0.107214 CTTATTTGCTGGGAGCCGGA 60.107 55.000 5.05 0.00 41.51 5.14
128 129 1.103398 CCTTATTTGCTGGGAGCCGG 61.103 60.000 0.00 0.00 41.51 6.13
129 130 0.107214 TCCTTATTTGCTGGGAGCCG 60.107 55.000 0.00 0.00 41.51 5.52
130 131 1.064389 ACTCCTTATTTGCTGGGAGCC 60.064 52.381 7.64 0.00 46.54 4.70
131 132 2.426842 ACTCCTTATTTGCTGGGAGC 57.573 50.000 7.64 0.00 46.54 4.70
133 134 3.132289 CGTCTACTCCTTATTTGCTGGGA 59.868 47.826 0.00 0.00 0.00 4.37
134 135 3.458189 CGTCTACTCCTTATTTGCTGGG 58.542 50.000 0.00 0.00 0.00 4.45
143 144 2.799017 TCTGTTGCCGTCTACTCCTTA 58.201 47.619 0.00 0.00 0.00 2.69
154 155 1.228124 TCCCCTGTTTCTGTTGCCG 60.228 57.895 0.00 0.00 0.00 5.69
213 215 3.913445 AACATGGGTGGCTGGCCA 61.913 61.111 10.55 10.55 45.02 5.36
214 216 3.384532 CAACATGGGTGGCTGGCC 61.385 66.667 4.43 4.43 0.00 5.36
215 217 2.601367 ACAACATGGGTGGCTGGC 60.601 61.111 0.00 0.00 0.00 4.85
216 218 0.540365 AAGACAACATGGGTGGCTGG 60.540 55.000 7.72 0.00 0.00 4.85
217 219 0.599558 CAAGACAACATGGGTGGCTG 59.400 55.000 7.72 0.09 0.00 4.85
247 249 4.366684 GACCTTGGGGCTGGGGTG 62.367 72.222 0.00 0.00 35.63 4.61
417 438 0.845102 TGGGAGGGGAGAAAAGGGAC 60.845 60.000 0.00 0.00 0.00 4.46
418 439 0.103608 TTGGGAGGGGAGAAAAGGGA 60.104 55.000 0.00 0.00 0.00 4.20
496 527 2.729479 GCTCTGCCTGCTGCTAGGA 61.729 63.158 18.30 3.44 40.42 2.94
497 528 2.203042 GCTCTGCCTGCTGCTAGG 60.203 66.667 12.07 12.07 42.00 3.02
498 529 2.203042 GGCTCTGCCTGCTGCTAG 60.203 66.667 0.00 0.00 46.69 3.42
508 541 4.341783 ACCACTGGCTGGCTCTGC 62.342 66.667 2.00 0.00 45.32 4.26
532 565 1.452833 GATCAGAGCAAGGGGGCAC 60.453 63.158 0.00 0.00 35.83 5.01
533 566 2.683465 GGATCAGAGCAAGGGGGCA 61.683 63.158 0.00 0.00 35.83 5.36
534 567 2.194326 GGATCAGAGCAAGGGGGC 59.806 66.667 0.00 0.00 0.00 5.80
535 568 0.106819 CTTGGATCAGAGCAAGGGGG 60.107 60.000 0.00 0.00 0.00 5.40
536 569 0.750911 GCTTGGATCAGAGCAAGGGG 60.751 60.000 12.99 0.00 38.73 4.79
537 570 0.750911 GGCTTGGATCAGAGCAAGGG 60.751 60.000 17.87 0.00 40.63 3.95
541 574 1.676916 CGAAAGGCTTGGATCAGAGCA 60.677 52.381 17.87 0.00 40.63 4.26
655 688 1.519719 CTTGGCTCGAAGGAGGGAG 59.480 63.158 0.00 0.00 40.80 4.30
656 689 2.660064 GCTTGGCTCGAAGGAGGGA 61.660 63.158 0.00 0.00 40.80 4.20
819 869 4.762251 CCAAGAAAGGAAGTAAGGAACCTG 59.238 45.833 0.00 0.00 32.73 4.00
823 873 5.456186 CCTCACCAAGAAAGGAAGTAAGGAA 60.456 44.000 0.00 0.00 31.44 3.36
824 874 4.041691 CCTCACCAAGAAAGGAAGTAAGGA 59.958 45.833 0.00 0.00 31.44 3.36
825 875 4.327680 CCTCACCAAGAAAGGAAGTAAGG 58.672 47.826 0.00 0.00 31.44 2.69
826 876 3.753797 GCCTCACCAAGAAAGGAAGTAAG 59.246 47.826 0.00 0.00 31.44 2.34
827 877 3.137544 TGCCTCACCAAGAAAGGAAGTAA 59.862 43.478 0.00 0.00 31.44 2.24
828 878 2.708861 TGCCTCACCAAGAAAGGAAGTA 59.291 45.455 0.00 0.00 31.44 2.24
829 879 1.494721 TGCCTCACCAAGAAAGGAAGT 59.505 47.619 0.00 0.00 31.44 3.01
830 880 2.157738 CTGCCTCACCAAGAAAGGAAG 58.842 52.381 0.00 0.00 31.44 3.46
843 893 1.640149 TCATCCCAAATTCCTGCCTCA 59.360 47.619 0.00 0.00 0.00 3.86
845 895 3.409804 AATCATCCCAAATTCCTGCCT 57.590 42.857 0.00 0.00 0.00 4.75
1552 1621 3.728373 GGAGGTGGGGATGGCGTT 61.728 66.667 0.00 0.00 0.00 4.84
1564 1633 3.642741 AATGGCGAGGGGAGGAGGT 62.643 63.158 0.00 0.00 0.00 3.85
1625 1697 2.663826 AGACGGCAAGAGACTGAATC 57.336 50.000 0.00 0.00 0.00 2.52
1647 1719 3.935024 CAGGGCATGCAGCTGAAT 58.065 55.556 20.43 10.50 44.79 2.57
1661 1733 6.515832 AGAAAAAGAAGTGGTAAAATGCAGG 58.484 36.000 0.00 0.00 0.00 4.85
1800 1873 2.548057 GACGAAATGCAAGTCTTGGTCA 59.452 45.455 14.40 5.15 30.73 4.02
1885 1960 4.335874 ACGTAGTTGATAGGACTAGCACAG 59.664 45.833 0.00 0.00 37.78 3.66
1908 1993 2.100252 CCAAGCGACCCTCTAACGAATA 59.900 50.000 0.00 0.00 0.00 1.75
1909 1994 1.134788 CCAAGCGACCCTCTAACGAAT 60.135 52.381 0.00 0.00 0.00 3.34
1910 1995 0.245539 CCAAGCGACCCTCTAACGAA 59.754 55.000 0.00 0.00 0.00 3.85
1911 1996 0.896940 ACCAAGCGACCCTCTAACGA 60.897 55.000 0.00 0.00 0.00 3.85
1912 1997 0.037605 AACCAAGCGACCCTCTAACG 60.038 55.000 0.00 0.00 0.00 3.18
1913 1998 1.001633 TGAACCAAGCGACCCTCTAAC 59.998 52.381 0.00 0.00 0.00 2.34
1914 1999 1.344065 TGAACCAAGCGACCCTCTAA 58.656 50.000 0.00 0.00 0.00 2.10
1915 2000 1.001633 GTTGAACCAAGCGACCCTCTA 59.998 52.381 0.00 0.00 0.00 2.43
1916 2001 0.250338 GTTGAACCAAGCGACCCTCT 60.250 55.000 0.00 0.00 0.00 3.69
1917 2002 1.235281 GGTTGAACCAAGCGACCCTC 61.235 60.000 9.98 0.00 38.42 4.30
1918 2003 1.228154 GGTTGAACCAAGCGACCCT 60.228 57.895 9.98 0.00 38.42 4.34
1919 2004 3.351450 GGTTGAACCAAGCGACCC 58.649 61.111 9.98 0.00 38.42 4.46
2045 2137 1.449726 GCTCCATCGCCATGAATGCA 61.450 55.000 0.00 0.00 30.57 3.96
2187 2279 7.562088 GGAGGAAAGAAGATAGGAAGAGTAGAA 59.438 40.741 0.00 0.00 0.00 2.10
2198 2292 4.294347 AGGTGAGGGAGGAAAGAAGATAG 58.706 47.826 0.00 0.00 0.00 2.08
2222 2316 3.896133 GCCATGAGCATGCCACGG 61.896 66.667 15.66 14.96 42.97 4.94
2273 2380 6.974965 AGGCTCTTTAAACAGAATTGAAGTG 58.025 36.000 0.00 0.00 30.39 3.16
2489 2596 9.971922 GAAAGGATTGATCAAGAAAAGAAAAGA 57.028 29.630 14.54 0.00 0.00 2.52
2490 2597 9.978044 AGAAAGGATTGATCAAGAAAAGAAAAG 57.022 29.630 14.54 0.00 0.00 2.27
2510 2617 5.360714 AGTGAGCTCATCTTCTCTAGAAAGG 59.639 44.000 21.47 0.00 36.22 3.11
2538 2645 4.547406 ACTTCGCTTGTTTCCTAACAAC 57.453 40.909 0.00 0.00 46.46 3.32
2585 2695 2.607771 CCAAACGGCAGTTGAAATCCTG 60.608 50.000 2.10 0.00 41.05 3.86
2700 2810 1.179174 TCCAGCAGTGCACTAGACGT 61.179 55.000 21.20 0.00 0.00 4.34
2701 2811 0.734253 GTCCAGCAGTGCACTAGACG 60.734 60.000 21.20 8.42 0.00 4.18
2723 2833 3.521937 ACCAGCTACTGTTTAGCCCAATA 59.478 43.478 0.00 0.00 41.25 1.90
2911 3021 3.818773 AGGGTCATAACAAACAAAGTCGG 59.181 43.478 0.00 0.00 0.00 4.79
3031 3142 6.151663 TGTGTACTCTAAACAGCTAACACA 57.848 37.500 0.00 0.00 42.48 3.72
3096 3207 0.182299 TTGTCATCTGCCCACACACA 59.818 50.000 0.00 0.00 0.00 3.72
3289 3400 3.189080 TCTCATGCACTGCAACAACATAC 59.811 43.478 8.03 0.00 43.62 2.39
3302 3413 5.642919 AGAGAAGAACAAGAATCTCATGCAC 59.357 40.000 0.00 0.00 40.57 4.57
3504 3615 3.980775 AGAATTGTTCCAATTTGCGAACG 59.019 39.130 17.94 0.00 41.04 3.95
3554 3665 9.288576 CCTCTGCAAAACAATAGATTGGATATA 57.711 33.333 7.16 0.00 41.96 0.86
3560 3671 5.183713 TCCACCTCTGCAAAACAATAGATTG 59.816 40.000 0.61 0.61 43.26 2.67
3566 3677 3.706086 ACTTTCCACCTCTGCAAAACAAT 59.294 39.130 0.00 0.00 0.00 2.71
3695 3806 6.633500 ATTAGCTGCTAACTGTGTGAAAAA 57.367 33.333 23.20 0.00 0.00 1.94
3772 3883 6.560253 ATCGAAGAAAATATGGTATGGCAC 57.440 37.500 0.00 0.00 43.58 5.01
3886 4004 7.739825 TCGATGAGAATAGAAAATTCTGGGAT 58.260 34.615 5.93 0.00 38.38 3.85
4103 4221 3.807209 GCACCTCGGGAGCAACATAATAT 60.807 47.826 7.31 0.00 39.08 1.28
4199 4317 2.342279 CGTGCCCAGAAAGGTCGA 59.658 61.111 0.00 0.00 34.66 4.20
4337 4455 1.219124 GGCAGTCATCCTCTTGCGA 59.781 57.895 0.00 0.00 0.00 5.10
4424 4542 4.781621 AGCATCATTCTGCAGGAGGATATA 59.218 41.667 21.31 0.00 44.77 0.86
4425 4543 3.587951 AGCATCATTCTGCAGGAGGATAT 59.412 43.478 21.31 10.81 44.77 1.63
4432 4550 3.693085 ACAGTTAAGCATCATTCTGCAGG 59.307 43.478 15.13 0.00 44.77 4.85
4674 4799 8.956533 AAACAAATTAACACTTGCTGGTAAAT 57.043 26.923 0.00 0.00 35.59 1.40
4820 4945 7.855904 GGTAATGCAATTAAATTCAGGACGTAG 59.144 37.037 0.00 0.00 41.12 3.51
4823 4948 6.559810 TGGTAATGCAATTAAATTCAGGACG 58.440 36.000 0.00 0.00 41.12 4.79
4865 4990 3.450578 GCCTGCAAAATGTATGGACATG 58.549 45.455 0.00 0.00 45.93 3.21
4974 5099 7.172654 ACTAACCGATTTCAAATTTTGCAAC 57.827 32.000 0.00 0.00 0.00 4.17
5058 5183 0.535780 TCACCAGAGCCTGCAAGTTG 60.536 55.000 0.00 0.00 0.00 3.16
5085 5210 2.291741 GGAATCCTTCATTGCATCCGTC 59.708 50.000 0.00 0.00 33.06 4.79
5166 5291 0.393944 TCGGCGTCTCAGTCCAGTAT 60.394 55.000 6.85 0.00 0.00 2.12
5169 5294 1.867919 AAGTCGGCGTCTCAGTCCAG 61.868 60.000 6.85 0.00 0.00 3.86
5329 5454 1.202806 CCCTCCTTGTCAAACAGCTCA 60.203 52.381 0.00 0.00 0.00 4.26
5338 5463 2.429930 CGGTTGCCCTCCTTGTCA 59.570 61.111 0.00 0.00 0.00 3.58
5387 5512 5.377478 TCTTCAGACTACAGTTCAGACTCA 58.623 41.667 0.00 0.00 32.54 3.41
5409 5534 9.443283 GTCAAGTGATCATGCATAAATTAACTC 57.557 33.333 0.00 0.00 0.00 3.01
5672 5802 1.078848 ACCAGCGAGAGATTGGCAC 60.079 57.895 0.00 0.00 39.94 5.01
5673 5803 1.078918 CACCAGCGAGAGATTGGCA 60.079 57.895 0.00 0.00 39.94 4.92
5731 5861 2.125552 TCGCAAGCCATCGTCCTG 60.126 61.111 0.00 0.00 37.18 3.86
5767 5897 0.868406 CACAAAGACTGTCGGCTTCC 59.132 55.000 1.52 0.00 35.47 3.46
5851 5984 1.271707 GGGGGTACAAGCAAGCACTAA 60.272 52.381 0.00 0.00 0.00 2.24
5982 6263 2.035704 CCAAGCCATAACAACAACAGCA 59.964 45.455 0.00 0.00 0.00 4.41
5983 6264 2.295909 TCCAAGCCATAACAACAACAGC 59.704 45.455 0.00 0.00 0.00 4.40
5984 6265 3.820467 TCTCCAAGCCATAACAACAACAG 59.180 43.478 0.00 0.00 0.00 3.16
6033 6317 6.655078 ACACCTTATTTGAGACAGCAAAAT 57.345 33.333 0.00 0.00 40.72 1.82
6173 8500 8.607459 CAAGAACCACTACTTGCATAATAAGAG 58.393 37.037 0.00 0.00 37.32 2.85
6190 8517 4.613622 GCATCACATACACACAAGAACCAC 60.614 45.833 0.00 0.00 0.00 4.16
6196 8523 4.754372 ACTTGCATCACATACACACAAG 57.246 40.909 0.00 0.00 39.09 3.16
6199 8526 5.572211 CCATTACTTGCATCACATACACAC 58.428 41.667 0.00 0.00 0.00 3.82
6223 8550 1.843851 TCATAGGCACAAGGGTAAGGG 59.156 52.381 0.00 0.00 0.00 3.95
6224 8551 2.421529 GGTCATAGGCACAAGGGTAAGG 60.422 54.545 0.00 0.00 0.00 2.69
6225 8552 2.238646 TGGTCATAGGCACAAGGGTAAG 59.761 50.000 0.00 0.00 0.00 2.34
6226 8553 2.270858 TGGTCATAGGCACAAGGGTAA 58.729 47.619 0.00 0.00 0.00 2.85
6227 8554 1.959710 TGGTCATAGGCACAAGGGTA 58.040 50.000 0.00 0.00 0.00 3.69
6228 8555 1.072266 TTGGTCATAGGCACAAGGGT 58.928 50.000 0.00 0.00 0.00 4.34
6234 8561 1.082117 CGTCGGTTGGTCATAGGCAC 61.082 60.000 0.00 0.00 0.00 5.01
6249 8576 2.286536 TGAATCATGCATGCATTCGTCG 60.287 45.455 30.32 18.42 33.90 5.12
6254 8581 5.047847 GCTAAACTGAATCATGCATGCATT 58.952 37.500 30.32 17.57 33.90 3.56
6274 8605 0.599558 ACACGAGCAAACTACCGCTA 59.400 50.000 0.00 0.00 38.99 4.26
6275 8606 0.944311 CACACGAGCAAACTACCGCT 60.944 55.000 0.00 0.00 42.42 5.52
6278 8609 2.870411 AGAAACACACGAGCAAACTACC 59.130 45.455 0.00 0.00 0.00 3.18
6284 8615 2.560504 ACATGAGAAACACACGAGCAA 58.439 42.857 0.00 0.00 0.00 3.91
6301 8632 2.560105 GCAAGGAGCCTTCTGAAAACAT 59.440 45.455 0.00 0.00 37.23 2.71
6303 8634 1.956477 TGCAAGGAGCCTTCTGAAAAC 59.044 47.619 0.00 0.00 44.83 2.43
6304 8635 2.158623 TCTGCAAGGAGCCTTCTGAAAA 60.159 45.455 0.00 0.00 44.83 2.29
6366 8699 7.623677 CCTTCCCTTTCCCCTTATTCTTTTTAT 59.376 37.037 0.00 0.00 0.00 1.40
6373 8707 2.091278 CCCCTTCCCTTTCCCCTTATTC 60.091 54.545 0.00 0.00 0.00 1.75
6435 8769 3.380004 TCCTTGCAATTTTATACTGCCCG 59.620 43.478 0.00 0.00 35.13 6.13
6490 8824 2.334838 GTGTTGGAGATACACGGTGAC 58.665 52.381 16.29 5.94 36.84 3.67
6491 8825 1.274167 GGTGTTGGAGATACACGGTGA 59.726 52.381 16.29 0.00 45.27 4.02
6492 8826 1.722011 GGTGTTGGAGATACACGGTG 58.278 55.000 6.58 6.58 45.27 4.94
6493 8827 0.245539 CGGTGTTGGAGATACACGGT 59.754 55.000 0.00 0.00 45.27 4.83
6494 8828 0.528924 TCGGTGTTGGAGATACACGG 59.471 55.000 0.00 0.00 45.27 4.94
6495 8829 1.469251 CCTCGGTGTTGGAGATACACG 60.469 57.143 0.00 0.00 45.27 4.49
6496 8830 1.134788 CCCTCGGTGTTGGAGATACAC 60.135 57.143 0.00 0.00 43.96 2.90
6497 8831 1.191535 CCCTCGGTGTTGGAGATACA 58.808 55.000 0.00 0.00 33.27 2.29
6498 8832 1.192428 ACCCTCGGTGTTGGAGATAC 58.808 55.000 0.00 0.00 32.98 2.24
6499 8833 3.703804 ACCCTCGGTGTTGGAGATA 57.296 52.632 0.00 0.00 32.98 1.98
6500 8834 4.561155 ACCCTCGGTGTTGGAGAT 57.439 55.556 0.00 0.00 32.98 2.75
6516 8850 2.743538 TGAGCTGCGGTGCATCAC 60.744 61.111 0.00 0.00 38.13 3.06
6517 8851 2.743538 GTGAGCTGCGGTGCATCA 60.744 61.111 0.00 0.00 38.13 3.07
6518 8852 3.857854 CGTGAGCTGCGGTGCATC 61.858 66.667 0.00 0.00 38.13 3.91
6519 8853 4.687215 ACGTGAGCTGCGGTGCAT 62.687 61.111 11.28 0.00 38.13 3.96
6522 8856 4.700365 TCGACGTGAGCTGCGGTG 62.700 66.667 11.28 4.12 0.00 4.94
6523 8857 3.898627 CTTCGACGTGAGCTGCGGT 62.899 63.158 11.28 0.00 0.00 5.68
6524 8858 3.175240 CTTCGACGTGAGCTGCGG 61.175 66.667 11.28 0.00 0.00 5.69
6525 8859 3.175240 CCTTCGACGTGAGCTGCG 61.175 66.667 0.00 0.00 0.00 5.18
6526 8860 1.803519 CTCCTTCGACGTGAGCTGC 60.804 63.158 0.00 0.00 0.00 5.25
6527 8861 1.153939 CCTCCTTCGACGTGAGCTG 60.154 63.158 0.00 0.00 0.00 4.24
6528 8862 2.995872 GCCTCCTTCGACGTGAGCT 61.996 63.158 0.00 0.00 0.00 4.09
6529 8863 2.507324 GCCTCCTTCGACGTGAGC 60.507 66.667 0.00 0.00 0.00 4.26
6530 8864 2.182030 GGCCTCCTTCGACGTGAG 59.818 66.667 0.00 0.00 0.00 3.51
6531 8865 2.282958 AGGCCTCCTTCGACGTGA 60.283 61.111 0.00 0.00 0.00 4.35
6532 8866 2.125912 CAGGCCTCCTTCGACGTG 60.126 66.667 0.00 0.00 0.00 4.49
6533 8867 2.600769 ACAGGCCTCCTTCGACGT 60.601 61.111 0.00 0.00 0.00 4.34
6534 8868 2.182030 GACAGGCCTCCTTCGACG 59.818 66.667 0.00 0.00 0.00 5.12
6535 8869 2.579738 GGACAGGCCTCCTTCGAC 59.420 66.667 0.00 0.00 0.00 4.20
6536 8870 3.068691 CGGACAGGCCTCCTTCGA 61.069 66.667 0.00 0.00 0.00 3.71
6537 8871 4.148825 CCGGACAGGCCTCCTTCG 62.149 72.222 0.00 0.42 0.00 3.79
6538 8872 2.245438 CTTCCGGACAGGCCTCCTTC 62.245 65.000 1.83 0.00 40.77 3.46
6539 8873 2.203938 TTCCGGACAGGCCTCCTT 60.204 61.111 1.83 0.00 40.77 3.36
6540 8874 2.685380 CTTCCGGACAGGCCTCCT 60.685 66.667 1.83 0.00 40.77 3.69
6541 8875 4.475135 GCTTCCGGACAGGCCTCC 62.475 72.222 1.83 0.17 40.77 4.30
6542 8876 4.821589 CGCTTCCGGACAGGCCTC 62.822 72.222 1.83 0.00 40.77 4.70
6546 8880 2.642254 TACCACGCTTCCGGACAGG 61.642 63.158 1.83 4.31 42.97 4.00
6547 8881 1.445582 GTACCACGCTTCCGGACAG 60.446 63.158 1.83 6.46 39.22 3.51
6548 8882 1.537814 ATGTACCACGCTTCCGGACA 61.538 55.000 1.83 0.00 39.22 4.02
6549 8883 0.457035 TATGTACCACGCTTCCGGAC 59.543 55.000 1.83 0.00 39.22 4.79
6550 8884 1.135527 CTTATGTACCACGCTTCCGGA 59.864 52.381 0.00 0.00 39.22 5.14
6551 8885 1.567504 CTTATGTACCACGCTTCCGG 58.432 55.000 0.00 0.00 39.22 5.14
6552 8886 0.928229 GCTTATGTACCACGCTTCCG 59.072 55.000 0.00 0.00 41.14 4.30
6553 8887 2.018542 TGCTTATGTACCACGCTTCC 57.981 50.000 0.00 0.00 0.00 3.46
6554 8888 3.425758 GGTTTGCTTATGTACCACGCTTC 60.426 47.826 0.00 0.00 0.00 3.86
6555 8889 2.486592 GGTTTGCTTATGTACCACGCTT 59.513 45.455 0.00 0.00 0.00 4.68
6556 8890 2.081462 GGTTTGCTTATGTACCACGCT 58.919 47.619 0.00 0.00 0.00 5.07
6557 8891 1.201987 CGGTTTGCTTATGTACCACGC 60.202 52.381 0.00 0.00 0.00 5.34
6558 8892 1.395608 CCGGTTTGCTTATGTACCACG 59.604 52.381 0.00 0.00 0.00 4.94
6559 8893 1.131693 GCCGGTTTGCTTATGTACCAC 59.868 52.381 1.90 0.00 0.00 4.16
6560 8894 1.455248 GCCGGTTTGCTTATGTACCA 58.545 50.000 1.90 0.00 0.00 3.25
6561 8895 0.375803 CGCCGGTTTGCTTATGTACC 59.624 55.000 1.90 0.00 0.00 3.34
6562 8896 0.375803 CCGCCGGTTTGCTTATGTAC 59.624 55.000 1.90 0.00 0.00 2.90
6563 8897 0.745128 CCCGCCGGTTTGCTTATGTA 60.745 55.000 1.90 0.00 0.00 2.29
6564 8898 2.043980 CCCGCCGGTTTGCTTATGT 61.044 57.895 1.90 0.00 0.00 2.29
6565 8899 2.798009 CCCGCCGGTTTGCTTATG 59.202 61.111 1.90 0.00 0.00 1.90
6566 8900 3.138128 GCCCGCCGGTTTGCTTAT 61.138 61.111 1.90 0.00 0.00 1.73
6585 8919 0.313987 GGGTTTCGGGTGCTCAAAAG 59.686 55.000 0.00 0.00 0.00 2.27
6586 8920 1.110518 GGGGTTTCGGGTGCTCAAAA 61.111 55.000 0.00 0.00 0.00 2.44
6587 8921 1.529713 GGGGTTTCGGGTGCTCAAA 60.530 57.895 0.00 0.00 0.00 2.69
6588 8922 2.114411 GGGGTTTCGGGTGCTCAA 59.886 61.111 0.00 0.00 0.00 3.02
6589 8923 3.172106 TGGGGTTTCGGGTGCTCA 61.172 61.111 0.00 0.00 0.00 4.26
6590 8924 2.671963 GTGGGGTTTCGGGTGCTC 60.672 66.667 0.00 0.00 0.00 4.26
6591 8925 4.636435 CGTGGGGTTTCGGGTGCT 62.636 66.667 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.