Multiple sequence alignment - TraesCS2B01G169400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G169400 chr2B 100.000 6090 0 0 1 6090 142378649 142372560 0.000000e+00 11247.0
1 TraesCS2B01G169400 chr2D 93.724 4573 189 46 3 4513 89877481 89872945 0.000000e+00 6765.0
2 TraesCS2B01G169400 chr2D 93.959 2218 121 7 863 3075 142216325 142218534 0.000000e+00 3341.0
3 TraesCS2B01G169400 chr2D 87.453 1339 93 34 4511 5829 89872913 89871630 0.000000e+00 1472.0
4 TraesCS2B01G169400 chr2D 84.470 264 18 5 5821 6062 89870746 89870484 7.890000e-59 239.0
5 TraesCS2B01G169400 chr2D 75.904 249 48 7 5803 6040 24224062 24224309 3.860000e-22 117.0
6 TraesCS2B01G169400 chr2D 83.908 87 14 0 5976 6062 476727100 476727186 3.910000e-12 84.2
7 TraesCS2B01G169400 chr2A 93.536 4564 215 50 1 4513 89492403 89487869 0.000000e+00 6721.0
8 TraesCS2B01G169400 chr2A 87.188 921 70 25 4511 5418 89487837 89486952 0.000000e+00 1003.0
9 TraesCS2B01G169400 chr2A 81.004 279 33 14 5803 6064 152019919 152020194 2.880000e-48 204.0
10 TraesCS2B01G169400 chr2A 97.727 44 1 0 541 584 89491826 89491783 6.550000e-10 76.8
11 TraesCS2B01G169400 chr7D 94.319 2218 114 6 863 3075 83434788 83436998 0.000000e+00 3387.0
12 TraesCS2B01G169400 chr7D 94.004 2218 119 7 863 3075 292322914 292325122 0.000000e+00 3347.0
13 TraesCS2B01G169400 chr7D 91.525 59 5 0 5982 6040 63652398 63652456 1.410000e-11 82.4
14 TraesCS2B01G169400 chr5A 94.319 2218 112 7 863 3075 427853894 427851686 0.000000e+00 3386.0
15 TraesCS2B01G169400 chr5A 80.319 376 59 7 5698 6062 601228562 601228933 2.800000e-68 270.0
16 TraesCS2B01G169400 chr5A 80.755 265 35 3 5814 6062 678670191 678669927 6.230000e-45 193.0
17 TraesCS2B01G169400 chr5A 77.407 270 48 8 5802 6061 334742095 334742361 1.370000e-31 148.0
18 TraesCS2B01G169400 chr5A 95.455 44 2 0 541 584 554988416 554988373 3.050000e-08 71.3
19 TraesCS2B01G169400 chrUn 94.229 2218 117 5 863 3075 19136650 19138861 0.000000e+00 3376.0
20 TraesCS2B01G169400 chr6A 94.049 2218 120 5 863 3075 517540134 517537924 0.000000e+00 3354.0
21 TraesCS2B01G169400 chr4D 93.916 2219 117 9 863 3075 215025472 215023266 0.000000e+00 3334.0
22 TraesCS2B01G169400 chr5D 78.431 255 33 8 5814 6051 98725445 98725694 4.920000e-31 147.0
23 TraesCS2B01G169400 chr5D 93.333 75 5 0 5990 6064 251938491 251938565 1.790000e-20 111.0
24 TraesCS2B01G169400 chr1A 91.228 57 5 0 6006 6062 534564074 534564018 1.820000e-10 78.7
25 TraesCS2B01G169400 chr1B 81.707 82 9 3 5887 5967 136924778 136924702 5.100000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G169400 chr2B 142372560 142378649 6089 True 11247.000000 11247 100.000 1 6090 1 chr2B.!!$R1 6089
1 TraesCS2B01G169400 chr2D 142216325 142218534 2209 False 3341.000000 3341 93.959 863 3075 1 chr2D.!!$F2 2212
2 TraesCS2B01G169400 chr2D 89870484 89877481 6997 True 2825.333333 6765 88.549 3 6062 3 chr2D.!!$R1 6059
3 TraesCS2B01G169400 chr2A 89486952 89492403 5451 True 2600.266667 6721 92.817 1 5418 3 chr2A.!!$R1 5417
4 TraesCS2B01G169400 chr7D 83434788 83436998 2210 False 3387.000000 3387 94.319 863 3075 1 chr7D.!!$F2 2212
5 TraesCS2B01G169400 chr7D 292322914 292325122 2208 False 3347.000000 3347 94.004 863 3075 1 chr7D.!!$F3 2212
6 TraesCS2B01G169400 chr5A 427851686 427853894 2208 True 3386.000000 3386 94.319 863 3075 1 chr5A.!!$R1 2212
7 TraesCS2B01G169400 chrUn 19136650 19138861 2211 False 3376.000000 3376 94.229 863 3075 1 chrUn.!!$F1 2212
8 TraesCS2B01G169400 chr6A 517537924 517540134 2210 True 3354.000000 3354 94.049 863 3075 1 chr6A.!!$R1 2212
9 TraesCS2B01G169400 chr4D 215023266 215025472 2206 True 3334.000000 3334 93.916 863 3075 1 chr4D.!!$R1 2212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 891 0.671251 TTCCCGTTGACCATTGCAAC 59.329 50.000 0.00 0.00 41.57 4.17 F
1499 1599 0.108186 ATCTGCTTGATCGGCGTCAA 60.108 50.000 18.76 18.76 36.70 3.18 F
2375 2477 2.079158 TGCTCTTCTCTTCCAAATGCG 58.921 47.619 0.00 0.00 0.00 4.73 F
3864 3973 0.100146 GCTTAGGCTCAATGCTGTGC 59.900 55.000 0.00 0.00 42.39 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 2477 0.674581 GGCCCCTGAAATTTTGCTGC 60.675 55.000 0.00 0.0 0.0 5.25 R
2891 3000 2.095461 GAAGTCAAGGGGAGGAATTGC 58.905 52.381 0.00 0.0 0.0 3.56 R
3918 4027 0.982852 TGGGTCCCTCAGGCTGTATG 60.983 60.000 15.27 6.2 0.0 2.39 R
5468 5648 0.107643 TGGATGTTGCCTGTTCGTCA 59.892 50.000 0.00 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.323758 TTGGCGCTCCGGTAAGCAT 62.324 57.895 14.86 0.00 42.62 3.79
25 26 1.759459 CTCCGGTAAGCATCTCCCCC 61.759 65.000 0.00 0.00 0.00 5.40
27 28 1.749033 CGGTAAGCATCTCCCCCTC 59.251 63.158 0.00 0.00 0.00 4.30
37 38 3.502119 GCATCTCCCCCTCTCTCTATCTT 60.502 52.174 0.00 0.00 0.00 2.40
52 53 1.291877 ATCTTGAGCGTGTTCGTGGC 61.292 55.000 0.00 0.00 39.49 5.01
121 122 1.202770 ACGGGAGGTTGAAAGTCTTGG 60.203 52.381 0.00 0.00 0.00 3.61
281 288 1.177401 GTTCCATTGGGTCTTGGAGC 58.823 55.000 2.09 0.00 42.73 4.70
406 437 2.032178 AGGCGCGCTTAGATTTCAATTC 59.968 45.455 32.29 8.68 0.00 2.17
415 446 7.113658 CGCTTAGATTTCAATTCTCTTACACG 58.886 38.462 0.00 0.00 0.00 4.49
436 467 3.563223 GACAGTCTACAGGTGCCCTATA 58.437 50.000 0.00 0.00 29.64 1.31
439 470 4.781087 ACAGTCTACAGGTGCCCTATAAAA 59.219 41.667 0.00 0.00 29.64 1.52
533 567 6.854381 ACTATTGCAAAAACTTAACGCACTAC 59.146 34.615 1.71 0.00 31.10 2.73
554 627 8.373256 CACTACGTATGTGTTTCTTCTGTTATG 58.627 37.037 13.66 0.00 0.00 1.90
580 653 7.309805 GGCTGTTGGAAGGTCAGTATTTTTATT 60.310 37.037 0.00 0.00 0.00 1.40
581 654 7.755373 GCTGTTGGAAGGTCAGTATTTTTATTC 59.245 37.037 0.00 0.00 0.00 1.75
582 655 8.698973 TGTTGGAAGGTCAGTATTTTTATTCA 57.301 30.769 0.00 0.00 0.00 2.57
583 656 9.308000 TGTTGGAAGGTCAGTATTTTTATTCAT 57.692 29.630 0.00 0.00 0.00 2.57
587 660 9.952188 GGAAGGTCAGTATTTTTATTCATTAGC 57.048 33.333 0.00 0.00 0.00 3.09
590 663 9.686683 AGGTCAGTATTTTTATTCATTAGCAGT 57.313 29.630 0.00 0.00 0.00 4.40
695 793 5.435686 TGTAACCAGAATCAGCCTTGTAT 57.564 39.130 0.00 0.00 0.00 2.29
712 810 6.403855 GCCTTGTATTCCTGCGTATTAACAAA 60.404 38.462 0.00 0.00 0.00 2.83
713 811 7.681065 GCCTTGTATTCCTGCGTATTAACAAAT 60.681 37.037 0.00 0.00 0.00 2.32
730 828 2.424956 CAAATTTAGCCTCCACTCCAGC 59.575 50.000 0.00 0.00 0.00 4.85
732 830 1.562672 TTTAGCCTCCACTCCAGCCC 61.563 60.000 0.00 0.00 0.00 5.19
735 833 3.406200 CCTCCACTCCAGCCCCAG 61.406 72.222 0.00 0.00 0.00 4.45
736 834 3.406200 CTCCACTCCAGCCCCAGG 61.406 72.222 0.00 0.00 0.00 4.45
793 891 0.671251 TTCCCGTTGACCATTGCAAC 59.329 50.000 0.00 0.00 41.57 4.17
914 1012 3.708451 TCTAATGCAGGTCTGTAGTCCA 58.292 45.455 0.00 0.00 0.00 4.02
1036 1134 6.106003 GGCTTTTGTTCTCTTTCTTTTGGAA 58.894 36.000 0.00 0.00 0.00 3.53
1211 1309 7.982919 ACCATTTTCACCAATGATGTATTCATG 59.017 33.333 0.00 0.00 44.51 3.07
1246 1344 5.231147 GTGATCTTTTGAGATACTGACGCTC 59.769 44.000 0.00 0.00 0.00 5.03
1247 1345 4.111375 TCTTTTGAGATACTGACGCTCC 57.889 45.455 0.00 0.00 0.00 4.70
1295 1395 1.693627 ACTTATCGATGACTCGGGCT 58.306 50.000 8.54 0.00 45.10 5.19
1310 1410 3.074412 TCGGGCTTCAACTCTTGATTTC 58.926 45.455 0.00 0.00 39.84 2.17
1364 1464 2.559330 CCGTTGCGCCCAGTAAAC 59.441 61.111 4.18 0.00 0.00 2.01
1441 1541 5.046878 TCAAATTTGCAGATGAGCCAGAAAT 60.047 36.000 13.54 0.00 0.00 2.17
1448 1548 2.175069 AGATGAGCCAGAAATGCCATCT 59.825 45.455 0.00 0.00 39.62 2.90
1466 1566 4.081198 CCATCTCTTAAGGAGTCTGTTGCT 60.081 45.833 1.85 0.00 42.40 3.91
1499 1599 0.108186 ATCTGCTTGATCGGCGTCAA 60.108 50.000 18.76 18.76 36.70 3.18
1601 1701 3.056536 TCTTCCTGATTCCTGAACACTCG 60.057 47.826 0.00 0.00 0.00 4.18
1856 1956 7.458397 AGGATTATTGTTCCTCAGTGTGTTTA 58.542 34.615 0.00 0.00 39.46 2.01
1857 1957 7.390718 AGGATTATTGTTCCTCAGTGTGTTTAC 59.609 37.037 0.00 0.00 39.46 2.01
1926 2026 5.602978 TGGTTTCTTAGAAGAAGTCTCCAGT 59.397 40.000 4.96 0.00 45.01 4.00
2145 2245 8.856153 TCTATGAACCTTTGTAAGCACATTTA 57.144 30.769 0.00 0.00 33.76 1.40
2155 2255 6.751514 TGTAAGCACATTTAAGTACCATGG 57.248 37.500 11.19 11.19 0.00 3.66
2241 2341 4.740902 ACTGGCTTTGGAGGAAAACTTAT 58.259 39.130 0.00 0.00 0.00 1.73
2335 2437 5.641209 GCTTCAGAAACAGACTATCACACAT 59.359 40.000 0.00 0.00 0.00 3.21
2375 2477 2.079158 TGCTCTTCTCTTCCAAATGCG 58.921 47.619 0.00 0.00 0.00 4.73
2438 2540 5.305386 AGCAAATTTTTAGGAGTTCTGCCTT 59.695 36.000 0.00 0.00 36.96 4.35
2580 2683 7.063898 CCATATCGAGTATGCTTAATCTTGGTG 59.936 40.741 5.66 0.98 39.10 4.17
2583 2686 6.504398 TCGAGTATGCTTAATCTTGGTGTAG 58.496 40.000 5.66 0.00 0.00 2.74
2711 2820 3.902881 AAATGCTAGAGCTGCTGTACT 57.097 42.857 7.01 0.00 42.66 2.73
2834 2943 8.443937 GTTTTCTCTACTTTAGTACCATGCTTG 58.556 37.037 0.00 0.00 0.00 4.01
2868 2977 8.853077 TTATGCCTGAATCTGTATTCCTTATG 57.147 34.615 0.00 0.00 40.78 1.90
2872 2981 8.097038 TGCCTGAATCTGTATTCCTTATGTATC 58.903 37.037 0.00 0.00 40.78 2.24
2918 3027 2.637872 CCTCCCCTTGACTTCTGTACAA 59.362 50.000 0.00 0.00 0.00 2.41
2919 3028 3.072476 CCTCCCCTTGACTTCTGTACAAA 59.928 47.826 0.00 0.00 0.00 2.83
2947 3056 5.712917 TCTGTTCAAAACCAGTGGTAGTTTT 59.287 36.000 17.09 10.01 44.76 2.43
2981 3090 4.794278 TTGACTATGCAACCTTCTACGA 57.206 40.909 0.00 0.00 0.00 3.43
3188 3297 5.049828 TGCGATGTCGATCACTTAATTCAT 58.950 37.500 6.60 0.00 43.02 2.57
3213 3322 5.869344 TGAATCTTGTCTGAACCATAACTCG 59.131 40.000 0.00 0.00 0.00 4.18
3221 3330 7.383687 TGTCTGAACCATAACTCGTTTATCTT 58.616 34.615 0.00 0.00 0.00 2.40
3243 3352 4.101114 TGGGGCATTACTTCTCTGTTCTA 58.899 43.478 0.00 0.00 0.00 2.10
3254 3363 7.573968 ACTTCTCTGTTCTATTTTTGTTGCT 57.426 32.000 0.00 0.00 0.00 3.91
3261 3370 7.816995 TCTGTTCTATTTTTGTTGCTGTGTTTT 59.183 29.630 0.00 0.00 0.00 2.43
3344 3453 7.056635 ACCTTCCATGTATGTTAAGAGATTGG 58.943 38.462 0.00 0.00 0.00 3.16
3347 3456 6.957631 TCCATGTATGTTAAGAGATTGGTGT 58.042 36.000 0.00 0.00 0.00 4.16
3477 3586 1.261480 AGCACGGAGAGTCAAGATGT 58.739 50.000 0.00 0.00 0.00 3.06
3516 3625 5.859495 AGGTAGACTTCATAGGCTTATTGC 58.141 41.667 0.00 0.00 35.73 3.56
3539 3648 6.183360 TGCGTTGTTTTGTGTATATATGGCAT 60.183 34.615 4.88 4.88 0.00 4.40
3540 3649 7.012421 TGCGTTGTTTTGTGTATATATGGCATA 59.988 33.333 10.07 10.07 0.00 3.14
3625 3734 5.323371 TGTAGGCAATGGACATAAAAAGC 57.677 39.130 0.00 0.00 0.00 3.51
3632 3741 5.514279 CAATGGACATAAAAAGCGAGATCC 58.486 41.667 0.00 0.00 0.00 3.36
3655 3764 5.106948 CCATGTTCTACGTGATCAATATGCC 60.107 44.000 0.00 0.00 37.29 4.40
3667 3776 6.478344 GTGATCAATATGCCGAGATATCTTCC 59.522 42.308 6.70 0.00 0.00 3.46
3674 3783 4.470602 TGCCGAGATATCTTCCAGTTCTA 58.529 43.478 6.70 0.00 0.00 2.10
3736 3845 3.531538 TGGTGACTTCAGTTTGTGTCTC 58.468 45.455 0.00 0.00 0.00 3.36
3744 3853 7.055667 ACTTCAGTTTGTGTCTCTCTCATTA 57.944 36.000 0.00 0.00 0.00 1.90
3864 3973 0.100146 GCTTAGGCTCAATGCTGTGC 59.900 55.000 0.00 0.00 42.39 4.57
3874 3983 1.530720 CAATGCTGTGCGTAGTTGTCA 59.469 47.619 0.00 0.00 0.00 3.58
3875 3984 1.877637 ATGCTGTGCGTAGTTGTCAA 58.122 45.000 0.00 0.00 0.00 3.18
3894 4003 5.065090 TGTCAAGAATGATGTGGCTTTATCG 59.935 40.000 0.00 0.00 38.01 2.92
3918 4027 2.423577 AGTTCAGTACAATGGTTCCGC 58.576 47.619 0.00 0.00 0.00 5.54
3927 4036 0.255890 AATGGTTCCGCATACAGCCT 59.744 50.000 0.00 0.00 41.38 4.58
3928 4037 0.464373 ATGGTTCCGCATACAGCCTG 60.464 55.000 0.00 0.00 41.38 4.85
3935 4044 1.147153 GCATACAGCCTGAGGGACC 59.853 63.158 0.00 0.00 37.23 4.46
4057 4166 2.472695 TAGGTGCCACAAAGCTAGTG 57.527 50.000 11.26 11.26 36.76 2.74
4161 4270 0.619543 GGCCCACTAGACCCTGGTTA 60.620 60.000 0.00 0.00 0.00 2.85
4229 4342 6.658849 TGGTTATGACATGGCTAACATTACT 58.341 36.000 17.33 0.00 37.84 2.24
4315 4428 4.202223 ACCGACTACAATGTATGATCACCC 60.202 45.833 0.00 0.00 0.00 4.61
4331 4444 3.194620 TCACCCCTTCCTTAGCCATTAA 58.805 45.455 0.00 0.00 0.00 1.40
4397 4528 3.244630 ACCGAACTGTTTTAGTGCCCATA 60.245 43.478 0.00 0.00 40.26 2.74
4411 4542 2.498167 GCCCATAGCACAATCTACCTG 58.502 52.381 0.00 0.00 42.97 4.00
4415 4546 3.313526 CCATAGCACAATCTACCTGTTGC 59.686 47.826 0.00 0.00 0.00 4.17
4432 4563 1.963172 TGCCATGTCATCTGCTGATC 58.037 50.000 2.65 0.00 35.97 2.92
4443 4574 3.340337 TCTGCTGATCTTATGTCGACG 57.660 47.619 11.62 0.00 0.00 5.12
4446 4577 4.036852 TCTGCTGATCTTATGTCGACGAAT 59.963 41.667 11.62 2.10 0.00 3.34
4460 4591 4.594659 CGACGAATCGTATTTCTGTAGC 57.405 45.455 8.77 0.00 43.66 3.58
4463 4594 4.995124 ACGAATCGTATTTCTGTAGCACT 58.005 39.130 6.47 0.00 38.73 4.40
4468 4599 5.752892 TCGTATTTCTGTAGCACTAGGAG 57.247 43.478 0.00 0.00 0.00 3.69
4473 4604 6.552445 ATTTCTGTAGCACTAGGAGAACAT 57.448 37.500 0.00 0.00 0.00 2.71
4478 4609 8.762481 TCTGTAGCACTAGGAGAACATAATAA 57.238 34.615 0.00 0.00 0.00 1.40
4484 4615 8.310382 AGCACTAGGAGAACATAATAATGCTAG 58.690 37.037 0.00 0.00 36.79 3.42
4485 4616 8.091449 GCACTAGGAGAACATAATAATGCTAGT 58.909 37.037 0.00 0.00 35.84 2.57
4486 4617 9.988815 CACTAGGAGAACATAATAATGCTAGTT 57.011 33.333 2.46 0.00 34.48 2.24
4509 4640 7.657761 AGTTATTTATCCTATCTTGACAAGGCG 59.342 37.037 15.13 4.22 0.00 5.52
4522 4687 2.415512 GACAAGGCGTTTATCCACTGAC 59.584 50.000 0.00 0.00 0.00 3.51
4528 4693 4.020485 AGGCGTTTATCCACTGACTTACTT 60.020 41.667 0.00 0.00 0.00 2.24
4567 4735 6.431198 TTTTAACGTGCCATTATTCTCCTC 57.569 37.500 0.00 0.00 0.00 3.71
4571 4739 2.810274 CGTGCCATTATTCTCCTCATGG 59.190 50.000 0.00 0.00 39.48 3.66
4590 4758 1.338020 GGCAGGTTGTTGTCCTTCAAG 59.662 52.381 0.00 0.00 36.66 3.02
4602 4770 3.181459 TGTCCTTCAAGTGAACGGAATCA 60.181 43.478 11.43 6.40 35.06 2.57
4613 4781 3.181453 TGAACGGAATCAACCAACCTACA 60.181 43.478 0.00 0.00 0.00 2.74
4616 4784 3.263425 ACGGAATCAACCAACCTACAGAT 59.737 43.478 0.00 0.00 0.00 2.90
4626 4794 3.054434 CCAACCTACAGATTCCATCCACA 60.054 47.826 0.00 0.00 0.00 4.17
4635 4803 2.549064 TTCCATCCACATCCTATGCG 57.451 50.000 0.00 0.00 0.00 4.73
4670 4838 0.749818 TGCGACTTGCCAAAGGAACA 60.750 50.000 0.00 0.00 45.60 3.18
4673 4841 1.596954 CGACTTGCCAAAGGAACAACG 60.597 52.381 0.00 0.00 37.76 4.10
4677 4845 1.281656 GCCAAAGGAACAACGGTCG 59.718 57.895 0.00 0.00 0.00 4.79
4713 4881 0.589229 CTCGTCGTCGATGCAGGTAC 60.589 60.000 9.67 0.00 45.21 3.34
4717 4885 1.065928 CGTCGATGCAGGTACCCTC 59.934 63.158 8.74 0.61 0.00 4.30
4729 4897 2.832733 AGGTACCCTCTAGCAACACTTC 59.167 50.000 8.74 0.00 0.00 3.01
4744 4912 2.158769 ACACTTCCAGCATCACAAGACA 60.159 45.455 0.00 0.00 0.00 3.41
4745 4913 2.225019 CACTTCCAGCATCACAAGACAC 59.775 50.000 0.00 0.00 0.00 3.67
4746 4914 2.105477 ACTTCCAGCATCACAAGACACT 59.895 45.455 0.00 0.00 0.00 3.55
4747 4915 2.174363 TCCAGCATCACAAGACACTG 57.826 50.000 0.00 0.00 32.51 3.66
4748 4916 1.162698 CCAGCATCACAAGACACTGG 58.837 55.000 0.00 0.00 41.27 4.00
4749 4917 0.520404 CAGCATCACAAGACACTGGC 59.480 55.000 0.00 0.00 0.00 4.85
4750 4918 0.399454 AGCATCACAAGACACTGGCT 59.601 50.000 0.00 0.00 0.00 4.75
4751 4919 0.520404 GCATCACAAGACACTGGCTG 59.480 55.000 0.00 0.00 0.00 4.85
4752 4920 1.888215 CATCACAAGACACTGGCTGT 58.112 50.000 0.00 0.00 34.96 4.40
4776 4944 5.890985 TGTTTTATGTTACTGGCTATGGCAT 59.109 36.000 4.88 4.88 40.87 4.40
4777 4945 6.183360 TGTTTTATGTTACTGGCTATGGCATG 60.183 38.462 10.98 1.26 40.87 4.06
4778 4946 3.582998 ATGTTACTGGCTATGGCATGT 57.417 42.857 10.98 1.07 40.87 3.21
4779 4947 2.642427 TGTTACTGGCTATGGCATGTG 58.358 47.619 10.98 4.06 40.87 3.21
4780 4948 1.334869 GTTACTGGCTATGGCATGTGC 59.665 52.381 10.98 13.91 40.87 4.57
4790 4958 3.187058 GCATGTGCCTAACCCGTG 58.813 61.111 0.00 0.00 34.31 4.94
4793 4961 1.024579 CATGTGCCTAACCCGTGTCC 61.025 60.000 0.00 0.00 0.00 4.02
4794 4962 1.485294 ATGTGCCTAACCCGTGTCCA 61.485 55.000 0.00 0.00 0.00 4.02
4795 4963 1.298667 GTGCCTAACCCGTGTCCAT 59.701 57.895 0.00 0.00 0.00 3.41
4796 4964 0.743345 GTGCCTAACCCGTGTCCATC 60.743 60.000 0.00 0.00 0.00 3.51
4797 4965 1.153229 GCCTAACCCGTGTCCATCC 60.153 63.158 0.00 0.00 0.00 3.51
4798 4966 1.623542 GCCTAACCCGTGTCCATCCT 61.624 60.000 0.00 0.00 0.00 3.24
4799 4967 0.464452 CCTAACCCGTGTCCATCCTC 59.536 60.000 0.00 0.00 0.00 3.71
4800 4968 0.464452 CTAACCCGTGTCCATCCTCC 59.536 60.000 0.00 0.00 0.00 4.30
4801 4969 0.252330 TAACCCGTGTCCATCCTCCA 60.252 55.000 0.00 0.00 0.00 3.86
4802 4970 0.914417 AACCCGTGTCCATCCTCCAT 60.914 55.000 0.00 0.00 0.00 3.41
4803 4971 1.338136 ACCCGTGTCCATCCTCCATC 61.338 60.000 0.00 0.00 0.00 3.51
4804 4972 1.447643 CCGTGTCCATCCTCCATCC 59.552 63.158 0.00 0.00 0.00 3.51
4805 4973 1.068083 CGTGTCCATCCTCCATCCG 59.932 63.158 0.00 0.00 0.00 4.18
4806 4974 1.391933 CGTGTCCATCCTCCATCCGA 61.392 60.000 0.00 0.00 0.00 4.55
4807 4975 0.390860 GTGTCCATCCTCCATCCGAG 59.609 60.000 0.00 0.00 38.46 4.63
4808 4976 0.261696 TGTCCATCCTCCATCCGAGA 59.738 55.000 0.00 0.00 41.63 4.04
4809 4977 1.342975 TGTCCATCCTCCATCCGAGAA 60.343 52.381 0.00 0.00 41.63 2.87
4810 4978 1.974236 GTCCATCCTCCATCCGAGAAT 59.026 52.381 0.00 0.00 41.63 2.40
4842 5010 3.547513 GTTAGGGGCGGCGGAGAT 61.548 66.667 9.78 0.00 0.00 2.75
5000 5168 4.399978 CATTCGTATTTTTGGACCGTGTC 58.600 43.478 0.00 0.00 0.00 3.67
5196 5367 3.194968 TGTTTAGTAGTAGCTCAGTGCCC 59.805 47.826 0.00 0.00 44.23 5.36
5247 5418 6.176896 GCCTAGGTTTCTTCATCTTCTTTCT 58.823 40.000 11.31 0.00 0.00 2.52
5248 5419 6.657117 GCCTAGGTTTCTTCATCTTCTTTCTT 59.343 38.462 11.31 0.00 0.00 2.52
5249 5420 7.175816 GCCTAGGTTTCTTCATCTTCTTTCTTT 59.824 37.037 11.31 0.00 0.00 2.52
5250 5421 8.726068 CCTAGGTTTCTTCATCTTCTTTCTTTC 58.274 37.037 0.00 0.00 0.00 2.62
5334 5510 1.821753 CCCTGGTGCGAGATCTATAGG 59.178 57.143 0.00 0.00 0.00 2.57
5394 5574 3.722555 AAAATGTGACGCTGATGTACG 57.277 42.857 0.00 0.00 0.00 3.67
5441 5621 1.228154 AACCTTGGCCTGTTCGTCC 60.228 57.895 3.32 0.00 0.00 4.79
5467 5647 5.066117 AGCAAATCGTTCGTCTCTGACTATA 59.934 40.000 0.00 0.00 0.00 1.31
5468 5648 5.915758 GCAAATCGTTCGTCTCTGACTATAT 59.084 40.000 0.00 0.00 0.00 0.86
5469 5649 6.129326 GCAAATCGTTCGTCTCTGACTATATG 60.129 42.308 0.00 0.00 0.00 1.78
5470 5650 6.862711 AATCGTTCGTCTCTGACTATATGA 57.137 37.500 0.00 0.00 0.00 2.15
5517 5708 1.592669 CAAGGGACGCGGCTGATAG 60.593 63.158 13.91 0.00 0.00 2.08
5518 5709 3.447025 AAGGGACGCGGCTGATAGC 62.447 63.158 13.91 0.00 41.46 2.97
5527 5718 2.049063 GCTGATAGCCCGTAGCCG 60.049 66.667 0.00 0.00 45.47 5.52
5560 5751 1.328430 GGAAGACCTCCCCGACGATT 61.328 60.000 0.00 0.00 38.44 3.34
5578 5769 2.279120 CTCTCGCACGCATCCTCC 60.279 66.667 0.00 0.00 0.00 4.30
5591 5782 1.200020 CATCCTCCGCAGAAAACAACC 59.800 52.381 0.00 0.00 0.00 3.77
5592 5783 0.181587 TCCTCCGCAGAAAACAACCA 59.818 50.000 0.00 0.00 0.00 3.67
5593 5784 0.310854 CCTCCGCAGAAAACAACCAC 59.689 55.000 0.00 0.00 0.00 4.16
5594 5785 0.310854 CTCCGCAGAAAACAACCACC 59.689 55.000 0.00 0.00 0.00 4.61
5595 5786 0.106918 TCCGCAGAAAACAACCACCT 60.107 50.000 0.00 0.00 0.00 4.00
5596 5787 0.744281 CCGCAGAAAACAACCACCTT 59.256 50.000 0.00 0.00 0.00 3.50
5597 5788 1.136110 CCGCAGAAAACAACCACCTTT 59.864 47.619 0.00 0.00 0.00 3.11
5598 5789 2.418060 CCGCAGAAAACAACCACCTTTT 60.418 45.455 0.00 0.00 0.00 2.27
5626 5817 0.037046 TACCTCCGCGTTCTTTTCCC 60.037 55.000 4.92 0.00 0.00 3.97
5640 5831 3.442977 TCTTTTCCCCGAACGTTGAAAAA 59.557 39.130 18.89 11.50 36.57 1.94
5652 5843 5.503662 ACGTTGAAAAATTTCCGGTACTT 57.496 34.783 0.00 0.00 36.36 2.24
5669 5860 4.450080 GGTACTTCCGGACAAGTTACTTTG 59.550 45.833 13.87 0.00 37.75 2.77
5671 5862 4.520179 ACTTCCGGACAAGTTACTTTGTT 58.480 39.130 1.83 0.00 41.15 2.83
5672 5863 4.573607 ACTTCCGGACAAGTTACTTTGTTC 59.426 41.667 1.83 0.00 41.15 3.18
5673 5864 4.411256 TCCGGACAAGTTACTTTGTTCT 57.589 40.909 0.00 0.00 41.15 3.01
5674 5865 5.534207 TCCGGACAAGTTACTTTGTTCTA 57.466 39.130 0.00 0.00 41.15 2.10
5675 5866 5.916318 TCCGGACAAGTTACTTTGTTCTAA 58.084 37.500 0.00 0.00 41.15 2.10
5676 5867 5.987347 TCCGGACAAGTTACTTTGTTCTAAG 59.013 40.000 0.00 0.00 41.15 2.18
5677 5868 5.178809 CCGGACAAGTTACTTTGTTCTAAGG 59.821 44.000 0.00 0.00 41.15 2.69
5678 5869 5.756833 CGGACAAGTTACTTTGTTCTAAGGT 59.243 40.000 0.00 0.00 41.15 3.50
5679 5870 6.073927 CGGACAAGTTACTTTGTTCTAAGGTC 60.074 42.308 0.00 0.00 41.15 3.85
5680 5871 6.764560 GGACAAGTTACTTTGTTCTAAGGTCA 59.235 38.462 0.00 0.00 41.15 4.02
5681 5872 7.444487 GGACAAGTTACTTTGTTCTAAGGTCAT 59.556 37.037 0.00 0.00 41.15 3.06
5682 5873 8.379457 ACAAGTTACTTTGTTCTAAGGTCATC 57.621 34.615 0.00 0.00 38.05 2.92
5684 5875 9.057089 CAAGTTACTTTGTTCTAAGGTCATCTT 57.943 33.333 0.00 0.00 39.40 2.40
5685 5876 8.834749 AGTTACTTTGTTCTAAGGTCATCTTC 57.165 34.615 0.00 0.00 36.93 2.87
5686 5877 8.429641 AGTTACTTTGTTCTAAGGTCATCTTCA 58.570 33.333 0.00 0.00 36.93 3.02
5687 5878 9.052759 GTTACTTTGTTCTAAGGTCATCTTCAA 57.947 33.333 0.00 0.00 36.93 2.69
5688 5879 7.497925 ACTTTGTTCTAAGGTCATCTTCAAC 57.502 36.000 0.00 0.00 36.93 3.18
5689 5880 6.202954 ACTTTGTTCTAAGGTCATCTTCAACG 59.797 38.462 0.00 0.00 36.93 4.10
5692 5883 1.927174 CTAAGGTCATCTTCAACGCCG 59.073 52.381 0.00 0.00 36.93 6.46
5693 5884 0.673644 AAGGTCATCTTCAACGCCGG 60.674 55.000 0.00 0.00 0.00 6.13
5694 5885 1.375523 GGTCATCTTCAACGCCGGT 60.376 57.895 1.90 0.00 0.00 5.28
5695 5886 1.359459 GGTCATCTTCAACGCCGGTC 61.359 60.000 1.90 0.00 0.00 4.79
5696 5887 0.389948 GTCATCTTCAACGCCGGTCT 60.390 55.000 1.90 0.00 0.00 3.85
5711 5902 2.415090 CCGGTCTGTAAACTAGACACCG 60.415 54.545 0.00 1.08 44.92 4.94
5716 5907 3.762288 TCTGTAAACTAGACACCGCATCT 59.238 43.478 0.00 0.00 0.00 2.90
5717 5908 4.945543 TCTGTAAACTAGACACCGCATCTA 59.054 41.667 0.00 0.00 0.00 1.98
5719 5910 6.096423 TCTGTAAACTAGACACCGCATCTATT 59.904 38.462 0.00 0.00 0.00 1.73
5720 5911 6.636705 TGTAAACTAGACACCGCATCTATTT 58.363 36.000 0.00 0.00 0.00 1.40
5721 5912 7.774134 TGTAAACTAGACACCGCATCTATTTA 58.226 34.615 0.00 0.00 0.00 1.40
5722 5913 7.703621 TGTAAACTAGACACCGCATCTATTTAC 59.296 37.037 0.00 15.54 35.84 2.01
5731 5922 4.956034 CGCATCTATTTACGGACAGAAG 57.044 45.455 0.00 0.00 0.00 2.85
5734 5925 4.632153 CATCTATTTACGGACAGAAGGGG 58.368 47.826 0.00 0.00 0.00 4.79
5735 5926 3.036091 TCTATTTACGGACAGAAGGGGG 58.964 50.000 0.00 0.00 0.00 5.40
5754 5945 2.304180 GGGGAGTCTGTGGATATGGATG 59.696 54.545 0.00 0.00 0.00 3.51
5756 5947 2.611473 GGAGTCTGTGGATATGGATGCG 60.611 54.545 0.00 0.00 0.00 4.73
5757 5948 1.345741 AGTCTGTGGATATGGATGCGG 59.654 52.381 0.00 0.00 0.00 5.69
5758 5949 0.686789 TCTGTGGATATGGATGCGGG 59.313 55.000 0.00 0.00 0.00 6.13
5761 5952 1.704628 TGTGGATATGGATGCGGGAAT 59.295 47.619 0.00 0.00 0.00 3.01
5762 5953 2.108075 TGTGGATATGGATGCGGGAATT 59.892 45.455 0.00 0.00 0.00 2.17
5768 5959 2.057408 GGATGCGGGAATTGGCCAA 61.057 57.895 23.00 23.00 0.00 4.52
5829 6020 9.943163 ACAAATTTGGTGCATATTTAAACAAAC 57.057 25.926 21.74 0.00 0.00 2.93
5830 6021 9.392021 CAAATTTGGTGCATATTTAAACAAACC 57.608 29.630 10.49 0.00 0.00 3.27
5831 6022 7.680442 ATTTGGTGCATATTTAAACAAACCC 57.320 32.000 0.00 0.00 0.00 4.11
5911 6994 2.730934 TGCACTAGACCGGACTCTAT 57.269 50.000 9.46 0.00 0.00 1.98
5927 7010 6.570764 CGGACTCTATCCTAGCCTAAAATGAC 60.571 46.154 0.00 0.00 46.69 3.06
5928 7011 6.295405 GGACTCTATCCTAGCCTAAAATGACC 60.295 46.154 0.00 0.00 45.22 4.02
5929 7012 6.143915 ACTCTATCCTAGCCTAAAATGACCA 58.856 40.000 0.00 0.00 0.00 4.02
5930 7013 6.042208 ACTCTATCCTAGCCTAAAATGACCAC 59.958 42.308 0.00 0.00 0.00 4.16
5932 7015 3.186283 TCCTAGCCTAAAATGACCACCA 58.814 45.455 0.00 0.00 0.00 4.17
5954 7037 3.081409 CCGTTCCCCATCTCCGGT 61.081 66.667 0.00 0.00 34.10 5.28
5955 7038 2.666098 CCGTTCCCCATCTCCGGTT 61.666 63.158 0.00 0.00 34.10 4.44
5975 7058 2.315246 GCCATGAGCCTCGAATCAC 58.685 57.895 0.00 0.00 34.35 3.06
5976 7059 1.162800 GCCATGAGCCTCGAATCACC 61.163 60.000 0.00 0.00 34.35 4.02
5977 7060 0.467384 CCATGAGCCTCGAATCACCT 59.533 55.000 0.00 0.00 0.00 4.00
5978 7061 1.134280 CCATGAGCCTCGAATCACCTT 60.134 52.381 0.00 0.00 0.00 3.50
5979 7062 2.208431 CATGAGCCTCGAATCACCTTC 58.792 52.381 0.00 0.00 0.00 3.46
6008 7113 3.330853 GCGGCTAATCGGCTGACG 61.331 66.667 0.00 0.00 46.11 4.35
6020 7125 1.953138 GCTGACGATGATGAGCCCG 60.953 63.158 0.00 0.00 0.00 6.13
6040 7145 1.968017 CAAGCTTGGCTTCAGCGGA 60.968 57.895 19.14 0.00 46.77 5.54
6062 7167 1.003233 GAAAGAGCGGTGGCCTTCT 60.003 57.895 3.32 0.00 41.24 2.85
6063 7168 0.606673 GAAAGAGCGGTGGCCTTCTT 60.607 55.000 3.32 2.85 41.24 2.52
6064 7169 0.606673 AAAGAGCGGTGGCCTTCTTC 60.607 55.000 3.32 0.00 41.24 2.87
6065 7170 2.788191 AAGAGCGGTGGCCTTCTTCG 62.788 60.000 3.32 1.73 41.24 3.79
6068 7173 3.121030 CGGTGGCCTTCTTCGCTG 61.121 66.667 3.32 0.00 0.00 5.18
6069 7174 2.032681 GGTGGCCTTCTTCGCTGT 59.967 61.111 3.32 0.00 0.00 4.40
6070 7175 1.600916 GGTGGCCTTCTTCGCTGTT 60.601 57.895 3.32 0.00 0.00 3.16
6071 7176 1.576421 GTGGCCTTCTTCGCTGTTG 59.424 57.895 3.32 0.00 0.00 3.33
6072 7177 2.260869 TGGCCTTCTTCGCTGTTGC 61.261 57.895 3.32 0.00 0.00 4.17
6073 7178 2.563427 GCCTTCTTCGCTGTTGCC 59.437 61.111 0.00 0.00 35.36 4.52
6074 7179 2.863153 CCTTCTTCGCTGTTGCCG 59.137 61.111 0.00 0.00 35.36 5.69
6075 7180 1.667830 CCTTCTTCGCTGTTGCCGA 60.668 57.895 0.00 0.00 35.36 5.54
6076 7181 1.493311 CTTCTTCGCTGTTGCCGAC 59.507 57.895 0.00 0.00 35.36 4.79
6077 7182 2.215478 CTTCTTCGCTGTTGCCGACG 62.215 60.000 0.00 0.00 35.36 5.12
6078 7183 4.430423 CTTCGCTGTTGCCGACGC 62.430 66.667 0.00 0.00 35.36 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.397618 CTCAAGATAGAGAGAGGGGGAGA 59.602 52.174 0.00 0.00 37.87 3.71
25 26 4.597079 GAACACGCTCAAGATAGAGAGAG 58.403 47.826 1.82 0.00 38.58 3.20
27 28 3.181505 ACGAACACGCTCAAGATAGAGAG 60.182 47.826 0.00 0.00 40.67 3.20
37 38 4.578898 ACGCCACGAACACGCTCA 62.579 61.111 0.00 0.00 0.00 4.26
121 122 5.801350 AAAACAGAGCAAAAAGAAAAGGC 57.199 34.783 0.00 0.00 0.00 4.35
159 164 2.755952 AAAGAGGAAAAGGCACCACT 57.244 45.000 0.00 0.00 0.00 4.00
195 202 6.604930 CACGGACAAAATTATACCGACTTTT 58.395 36.000 16.16 0.00 45.31 2.27
202 209 3.001939 CGGAGCACGGACAAAATTATACC 59.998 47.826 0.00 0.00 39.42 2.73
281 288 4.177026 AGCGAGACTGTAATTTGCTACTG 58.823 43.478 0.00 0.00 29.93 2.74
406 437 3.752222 ACCTGTAGACTGTCGTGTAAGAG 59.248 47.826 1.52 0.00 0.00 2.85
439 470 8.842358 TCTCAAACTAAAAATACATTCTCGGT 57.158 30.769 0.00 0.00 0.00 4.69
533 567 5.351465 AGCCATAACAGAAGAAACACATACG 59.649 40.000 0.00 0.00 0.00 3.06
536 570 5.072741 ACAGCCATAACAGAAGAAACACAT 58.927 37.500 0.00 0.00 0.00 3.21
538 572 5.215160 CAACAGCCATAACAGAAGAAACAC 58.785 41.667 0.00 0.00 0.00 3.32
554 627 2.789409 ATACTGACCTTCCAACAGCC 57.211 50.000 0.00 0.00 35.38 4.85
584 657 9.593134 ACATGAACAATTAAACAAAAACTGCTA 57.407 25.926 0.00 0.00 0.00 3.49
585 658 8.491331 ACATGAACAATTAAACAAAAACTGCT 57.509 26.923 0.00 0.00 0.00 4.24
586 659 9.631639 GTACATGAACAATTAAACAAAAACTGC 57.368 29.630 0.00 0.00 0.00 4.40
589 662 9.613153 CGTGTACATGAACAATTAAACAAAAAC 57.387 29.630 9.62 0.00 0.00 2.43
590 663 9.569167 TCGTGTACATGAACAATTAAACAAAAA 57.431 25.926 15.45 0.00 0.00 1.94
591 664 9.737427 ATCGTGTACATGAACAATTAAACAAAA 57.263 25.926 21.17 0.00 0.00 2.44
592 665 9.175060 CATCGTGTACATGAACAATTAAACAAA 57.825 29.630 21.17 0.00 0.00 2.83
593 666 7.324856 GCATCGTGTACATGAACAATTAAACAA 59.675 33.333 21.17 0.00 0.00 2.83
594 667 6.799441 GCATCGTGTACATGAACAATTAAACA 59.201 34.615 21.17 0.00 0.00 2.83
595 668 6.250527 GGCATCGTGTACATGAACAATTAAAC 59.749 38.462 21.17 4.09 0.00 2.01
596 669 6.072452 TGGCATCGTGTACATGAACAATTAAA 60.072 34.615 21.17 0.00 0.00 1.52
597 670 5.412904 TGGCATCGTGTACATGAACAATTAA 59.587 36.000 21.17 2.14 0.00 1.40
598 671 4.938226 TGGCATCGTGTACATGAACAATTA 59.062 37.500 21.17 4.32 0.00 1.40
599 672 3.755905 TGGCATCGTGTACATGAACAATT 59.244 39.130 21.17 2.09 0.00 2.32
600 673 3.126858 GTGGCATCGTGTACATGAACAAT 59.873 43.478 21.17 2.47 0.00 2.71
601 674 2.482336 GTGGCATCGTGTACATGAACAA 59.518 45.455 21.17 8.01 0.00 2.83
602 675 2.073056 GTGGCATCGTGTACATGAACA 58.927 47.619 21.17 16.61 0.00 3.18
603 676 2.073056 TGTGGCATCGTGTACATGAAC 58.927 47.619 21.17 14.77 0.00 3.18
604 677 2.464157 TGTGGCATCGTGTACATGAA 57.536 45.000 21.17 2.47 0.00 2.57
695 793 6.376018 AGGCTAAATTTGTTAATACGCAGGAA 59.624 34.615 0.00 0.00 0.00 3.36
712 810 0.548510 GGCTGGAGTGGAGGCTAAAT 59.451 55.000 0.00 0.00 33.29 1.40
713 811 1.562672 GGGCTGGAGTGGAGGCTAAA 61.563 60.000 0.00 0.00 36.29 1.85
730 828 0.179034 GACAGCTAAGATGCCTGGGG 60.179 60.000 0.00 0.00 0.00 4.96
732 830 0.835941 AGGACAGCTAAGATGCCTGG 59.164 55.000 0.00 0.00 0.00 4.45
733 831 2.706339 AAGGACAGCTAAGATGCCTG 57.294 50.000 0.00 0.00 0.00 4.85
734 832 3.728385 AAAAGGACAGCTAAGATGCCT 57.272 42.857 0.00 0.00 0.00 4.75
735 833 3.119352 CCAAAAAGGACAGCTAAGATGCC 60.119 47.826 0.00 0.00 41.22 4.40
736 834 3.507622 ACCAAAAAGGACAGCTAAGATGC 59.492 43.478 0.00 0.00 41.22 3.91
737 835 5.712152 AACCAAAAAGGACAGCTAAGATG 57.288 39.130 0.00 0.00 41.22 2.90
738 836 7.004691 AGTTAACCAAAAAGGACAGCTAAGAT 58.995 34.615 0.88 0.00 41.22 2.40
739 837 6.362248 AGTTAACCAAAAAGGACAGCTAAGA 58.638 36.000 0.88 0.00 41.22 2.10
740 838 6.635030 AGTTAACCAAAAAGGACAGCTAAG 57.365 37.500 0.88 0.00 41.22 2.18
914 1012 5.336531 CGTACAGAATCACCCACTAAACTCT 60.337 44.000 0.00 0.00 0.00 3.24
1036 1134 1.349357 GCAAGTGGAAGAGTTCTCCCT 59.651 52.381 0.00 0.00 0.00 4.20
1211 1309 2.191128 AAAGATCACTGCTGGACACC 57.809 50.000 0.00 0.00 0.00 4.16
1295 1395 1.804151 CGCCGGAAATCAAGAGTTGAA 59.196 47.619 5.05 0.00 43.95 2.69
1364 1464 6.992715 AGGTAGGGAATTTATTTCTGATGACG 59.007 38.462 0.00 0.00 34.56 4.35
1441 1541 3.445008 ACAGACTCCTTAAGAGATGGCA 58.555 45.455 3.36 0.00 46.50 4.92
1448 1548 6.493802 TCTCTTTAGCAACAGACTCCTTAAGA 59.506 38.462 3.36 0.00 0.00 2.10
1499 1599 1.081376 CTCGCGGACTGAAAGACGT 60.081 57.895 6.13 0.00 39.31 4.34
1601 1701 7.422399 TGAACTAACTGAACCAATTGCTAAAC 58.578 34.615 0.00 0.00 0.00 2.01
1856 1956 6.163476 TGCAACGTCATTAAAGATACTCTGT 58.837 36.000 0.00 0.00 0.00 3.41
1857 1957 6.647212 TGCAACGTCATTAAAGATACTCTG 57.353 37.500 0.00 0.00 0.00 3.35
2145 2245 1.640670 ACAGAATGGCCCATGGTACTT 59.359 47.619 11.73 0.00 43.62 2.24
2155 2255 2.191128 ACAGAGAACACAGAATGGCC 57.809 50.000 0.00 0.00 43.62 5.36
2247 2348 9.100554 CATGGCAGATAATTTGCATTTAAAAGA 57.899 29.630 3.19 0.00 43.28 2.52
2258 2360 7.095774 GCTTGCTTAATCATGGCAGATAATTTG 60.096 37.037 0.00 0.00 37.28 2.32
2335 2437 7.168219 AGAGCACCATTTCAAATCTGTAGTAA 58.832 34.615 0.00 0.00 0.00 2.24
2375 2477 0.674581 GGCCCCTGAAATTTTGCTGC 60.675 55.000 0.00 0.00 0.00 5.25
2561 2664 6.702282 GGACTACACCAAGATTAAGCATACTC 59.298 42.308 0.00 0.00 0.00 2.59
2580 2683 7.084486 GTGTGAAAATGAAGAAATGGGACTAC 58.916 38.462 0.00 0.00 0.00 2.73
2583 2686 5.841810 TGTGTGAAAATGAAGAAATGGGAC 58.158 37.500 0.00 0.00 0.00 4.46
2834 2943 2.128771 TTCAGGCATAAGTTCCAGGC 57.871 50.000 0.00 0.00 0.00 4.85
2891 3000 2.095461 GAAGTCAAGGGGAGGAATTGC 58.905 52.381 0.00 0.00 0.00 3.56
2918 3027 6.048732 ACCACTGGTTTTGAACAGAAAATT 57.951 33.333 0.00 0.00 38.09 1.82
2919 3028 5.675684 ACCACTGGTTTTGAACAGAAAAT 57.324 34.783 0.00 0.00 38.09 1.82
2954 3063 7.807907 CGTAGAAGGTTGCATAGTCAAATTTTT 59.192 33.333 0.00 0.00 0.00 1.94
2955 3064 7.174253 TCGTAGAAGGTTGCATAGTCAAATTTT 59.826 33.333 0.00 0.00 0.00 1.82
2956 3065 6.653320 TCGTAGAAGGTTGCATAGTCAAATTT 59.347 34.615 0.00 0.00 0.00 1.82
2981 3090 3.678289 TCTGTTGCTGTATGATGCAGTT 58.322 40.909 12.05 0.00 40.46 3.16
3113 3222 4.109050 GCAGTTCTGTCTGTGTATAGAGC 58.891 47.826 1.78 0.00 37.70 4.09
3168 3277 9.591404 GATTCAATGAATTAAGTGATCGACATC 57.409 33.333 10.09 0.00 31.89 3.06
3188 3297 6.368791 CGAGTTATGGTTCAGACAAGATTCAA 59.631 38.462 0.00 0.00 0.00 2.69
3213 3322 6.038714 CAGAGAAGTAATGCCCCAAGATAAAC 59.961 42.308 0.00 0.00 0.00 2.01
3221 3330 2.912956 AGAACAGAGAAGTAATGCCCCA 59.087 45.455 0.00 0.00 0.00 4.96
3243 3352 8.042944 AGAATGAAAAACACAGCAACAAAAAT 57.957 26.923 0.00 0.00 0.00 1.82
3254 3363 7.865385 GCACCAACTAATAGAATGAAAAACACA 59.135 33.333 0.00 0.00 0.00 3.72
3261 3370 7.601856 CCAAAAGCACCAACTAATAGAATGAA 58.398 34.615 0.00 0.00 0.00 2.57
3625 3734 3.692791 TCACGTAGAACATGGATCTCG 57.307 47.619 6.56 11.62 0.00 4.04
3632 3741 5.388786 CGGCATATTGATCACGTAGAACATG 60.389 44.000 0.00 0.00 0.00 3.21
3655 3764 6.869315 TGAGTAGAACTGGAAGATATCTCG 57.131 41.667 5.51 0.00 37.43 4.04
3667 3776 9.495572 ACCTCTTTTAAAAGATGAGTAGAACTG 57.504 33.333 28.98 15.37 43.52 3.16
3674 3783 7.406104 AGCCATACCTCTTTTAAAAGATGAGT 58.594 34.615 28.98 25.20 43.52 3.41
3862 3971 4.152223 CACATCATTCTTGACAACTACGCA 59.848 41.667 0.00 0.00 33.85 5.24
3864 3973 4.436050 GCCACATCATTCTTGACAACTACG 60.436 45.833 0.00 0.00 33.85 3.51
3874 3983 6.949352 ATTCGATAAAGCCACATCATTCTT 57.051 33.333 0.00 0.00 0.00 2.52
3875 3984 7.220030 ACTATTCGATAAAGCCACATCATTCT 58.780 34.615 0.00 0.00 0.00 2.40
3894 4003 5.220605 GCGGAACCATTGTACTGAACTATTC 60.221 44.000 0.00 0.00 0.00 1.75
3918 4027 0.982852 TGGGTCCCTCAGGCTGTATG 60.983 60.000 15.27 6.20 0.00 2.39
3927 4036 1.827792 TTTCCTTCTTGGGTCCCTCA 58.172 50.000 10.00 0.00 36.20 3.86
3928 4037 2.308866 TGATTTCCTTCTTGGGTCCCTC 59.691 50.000 10.00 0.00 36.20 4.30
4057 4166 3.462021 GTCATGAGGTTCTGGAGCATAC 58.538 50.000 0.00 0.00 0.00 2.39
4118 4227 2.032549 CAGTCTTTGCGACAGAGGTTTG 60.033 50.000 0.00 0.00 45.32 2.93
4161 4270 7.176515 TGTCAGATAACCATATGCAAACAAACT 59.823 33.333 0.00 0.00 0.00 2.66
4229 4342 1.327303 GGTGCTGTTCCATGACCAAA 58.673 50.000 0.00 0.00 0.00 3.28
4258 4371 6.264744 TCCTTACAAGGGTCTCTACATAATCG 59.735 42.308 8.14 0.00 46.47 3.34
4288 4401 6.533723 GTGATCATACATTGTAGTCGGTTTCA 59.466 38.462 0.00 0.00 0.00 2.69
4315 4428 8.697507 ACAGAAATATTAATGGCTAAGGAAGG 57.302 34.615 0.00 0.00 0.00 3.46
4342 4455 7.659652 AGCAAAGATAAAACTCTGTACAGAC 57.340 36.000 21.74 10.11 33.22 3.51
4377 4508 3.181510 GCTATGGGCACTAAAACAGTTCG 60.182 47.826 0.00 0.00 41.35 3.95
4378 4509 4.357018 GCTATGGGCACTAAAACAGTTC 57.643 45.455 0.00 0.00 41.35 3.01
4397 4528 1.073763 TGGCAACAGGTAGATTGTGCT 59.926 47.619 0.00 0.00 46.17 4.40
4411 4542 1.456296 TCAGCAGATGACATGGCAAC 58.544 50.000 4.70 1.74 31.12 4.17
4415 4546 5.306394 ACATAAGATCAGCAGATGACATGG 58.694 41.667 0.00 0.00 41.91 3.66
4432 4563 6.414109 ACAGAAATACGATTCGTCGACATAAG 59.586 38.462 16.10 5.00 41.54 1.73
4443 4574 6.736123 TCCTAGTGCTACAGAAATACGATTC 58.264 40.000 0.00 0.00 0.00 2.52
4446 4577 5.434408 TCTCCTAGTGCTACAGAAATACGA 58.566 41.667 0.00 0.00 0.00 3.43
4448 4579 6.864342 TGTTCTCCTAGTGCTACAGAAATAC 58.136 40.000 0.00 0.00 0.00 1.89
4453 4584 8.762481 TTATTATGTTCTCCTAGTGCTACAGA 57.238 34.615 0.00 0.00 0.00 3.41
4460 4591 9.988815 AACTAGCATTATTATGTTCTCCTAGTG 57.011 33.333 8.67 0.00 34.12 2.74
4484 4615 7.441458 ACGCCTTGTCAAGATAGGATAAATAAC 59.559 37.037 14.42 0.00 0.00 1.89
4485 4616 7.506114 ACGCCTTGTCAAGATAGGATAAATAA 58.494 34.615 14.42 0.00 0.00 1.40
4486 4617 7.062749 ACGCCTTGTCAAGATAGGATAAATA 57.937 36.000 14.42 0.00 0.00 1.40
4487 4618 5.930135 ACGCCTTGTCAAGATAGGATAAAT 58.070 37.500 14.42 0.00 0.00 1.40
4488 4619 5.353394 ACGCCTTGTCAAGATAGGATAAA 57.647 39.130 14.42 0.00 0.00 1.40
4489 4620 5.353394 AACGCCTTGTCAAGATAGGATAA 57.647 39.130 14.42 0.00 0.00 1.75
4509 4640 7.159372 TGAAGGAAGTAAGTCAGTGGATAAAC 58.841 38.462 0.00 0.00 0.00 2.01
4547 4712 4.746535 TGAGGAGAATAATGGCACGTTA 57.253 40.909 0.00 0.00 0.00 3.18
4559 4724 1.637553 ACAACCTGCCATGAGGAGAAT 59.362 47.619 7.43 0.00 36.51 2.40
4567 4735 1.270550 GAAGGACAACAACCTGCCATG 59.729 52.381 0.00 0.00 37.85 3.66
4571 4739 2.024414 ACTTGAAGGACAACAACCTGC 58.976 47.619 0.00 0.00 37.85 4.85
4572 4740 3.278574 TCACTTGAAGGACAACAACCTG 58.721 45.455 0.00 0.00 37.85 4.00
4590 4758 2.227194 AGGTTGGTTGATTCCGTTCAC 58.773 47.619 0.00 0.00 0.00 3.18
4602 4770 3.591527 TGGATGGAATCTGTAGGTTGGTT 59.408 43.478 0.00 0.00 44.71 3.67
4613 4781 3.307269 CGCATAGGATGTGGATGGAATCT 60.307 47.826 0.00 0.00 44.71 2.40
4616 4784 1.768275 ACGCATAGGATGTGGATGGAA 59.232 47.619 5.12 0.00 44.76 3.53
4626 4794 1.120530 AGTTTCCCGACGCATAGGAT 58.879 50.000 0.00 0.00 0.00 3.24
4635 4803 2.750888 GCATCCGCAGTTTCCCGAC 61.751 63.158 0.00 0.00 38.36 4.79
4670 4838 1.262640 ATTCCCTGGCTACGACCGTT 61.263 55.000 0.00 0.00 0.00 4.44
4673 4841 0.831307 AGAATTCCCTGGCTACGACC 59.169 55.000 0.65 0.00 0.00 4.79
4677 4845 2.694109 ACGAGTAGAATTCCCTGGCTAC 59.306 50.000 0.65 0.00 34.81 3.58
4713 4881 1.677217 GCTGGAAGTGTTGCTAGAGGG 60.677 57.143 0.00 0.00 35.30 4.30
4717 4885 2.417933 GTGATGCTGGAAGTGTTGCTAG 59.582 50.000 0.00 0.00 35.30 3.42
4729 4897 1.162698 CCAGTGTCTTGTGATGCTGG 58.837 55.000 0.00 0.00 39.06 4.85
4744 4912 4.518970 CCAGTAACATAAAACACAGCCAGT 59.481 41.667 0.00 0.00 0.00 4.00
4745 4913 4.615912 GCCAGTAACATAAAACACAGCCAG 60.616 45.833 0.00 0.00 0.00 4.85
4746 4914 3.254657 GCCAGTAACATAAAACACAGCCA 59.745 43.478 0.00 0.00 0.00 4.75
4747 4915 3.506067 AGCCAGTAACATAAAACACAGCC 59.494 43.478 0.00 0.00 0.00 4.85
4748 4916 4.766404 AGCCAGTAACATAAAACACAGC 57.234 40.909 0.00 0.00 0.00 4.40
4749 4917 6.677920 GCCATAGCCAGTAACATAAAACACAG 60.678 42.308 0.00 0.00 0.00 3.66
4750 4918 5.124776 GCCATAGCCAGTAACATAAAACACA 59.875 40.000 0.00 0.00 0.00 3.72
4751 4919 5.124776 TGCCATAGCCAGTAACATAAAACAC 59.875 40.000 0.00 0.00 38.69 3.32
4752 4920 5.257262 TGCCATAGCCAGTAACATAAAACA 58.743 37.500 0.00 0.00 38.69 2.83
4753 4921 5.828299 TGCCATAGCCAGTAACATAAAAC 57.172 39.130 0.00 0.00 38.69 2.43
4754 4922 5.890985 ACATGCCATAGCCAGTAACATAAAA 59.109 36.000 0.00 0.00 38.69 1.52
4755 4923 5.299028 CACATGCCATAGCCAGTAACATAAA 59.701 40.000 0.00 0.00 38.69 1.40
4758 4926 3.216800 CACATGCCATAGCCAGTAACAT 58.783 45.455 0.00 0.00 38.69 2.71
4776 4944 1.485294 ATGGACACGGGTTAGGCACA 61.485 55.000 0.00 0.00 0.00 4.57
4777 4945 0.743345 GATGGACACGGGTTAGGCAC 60.743 60.000 0.00 0.00 0.00 5.01
4778 4946 1.600107 GATGGACACGGGTTAGGCA 59.400 57.895 0.00 0.00 0.00 4.75
4779 4947 1.153229 GGATGGACACGGGTTAGGC 60.153 63.158 0.00 0.00 0.00 3.93
4780 4948 0.464452 GAGGATGGACACGGGTTAGG 59.536 60.000 0.00 0.00 0.00 2.69
4781 4949 0.464452 GGAGGATGGACACGGGTTAG 59.536 60.000 0.00 0.00 0.00 2.34
4783 4951 0.914417 ATGGAGGATGGACACGGGTT 60.914 55.000 0.00 0.00 0.00 4.11
4784 4952 1.306997 ATGGAGGATGGACACGGGT 60.307 57.895 0.00 0.00 0.00 5.28
4785 4953 1.447643 GATGGAGGATGGACACGGG 59.552 63.158 0.00 0.00 0.00 5.28
4786 4954 1.447643 GGATGGAGGATGGACACGG 59.552 63.158 0.00 0.00 0.00 4.94
4787 4955 1.068083 CGGATGGAGGATGGACACG 59.932 63.158 0.00 0.00 0.00 4.49
4788 4956 0.390860 CTCGGATGGAGGATGGACAC 59.609 60.000 0.00 0.00 39.22 3.67
4789 4957 0.261696 TCTCGGATGGAGGATGGACA 59.738 55.000 0.00 0.00 43.34 4.02
4790 4958 1.414158 TTCTCGGATGGAGGATGGAC 58.586 55.000 0.00 0.00 43.34 4.02
4793 4961 4.063689 CTGAAATTCTCGGATGGAGGATG 58.936 47.826 0.00 0.00 40.29 3.51
4794 4962 3.495806 GCTGAAATTCTCGGATGGAGGAT 60.496 47.826 0.00 0.00 43.21 3.24
4795 4963 2.158900 GCTGAAATTCTCGGATGGAGGA 60.159 50.000 0.00 0.00 43.34 3.71
4796 4964 2.158842 AGCTGAAATTCTCGGATGGAGG 60.159 50.000 0.00 0.00 43.34 4.30
4797 4965 3.191078 AGCTGAAATTCTCGGATGGAG 57.809 47.619 0.00 0.00 44.58 3.86
4798 4966 4.635223 CATAGCTGAAATTCTCGGATGGA 58.365 43.478 0.00 0.00 29.77 3.41
4799 4967 3.188048 GCATAGCTGAAATTCTCGGATGG 59.812 47.826 0.00 0.00 29.77 3.51
4800 4968 3.120752 CGCATAGCTGAAATTCTCGGATG 60.121 47.826 0.00 0.00 29.77 3.51
4801 4969 3.062763 CGCATAGCTGAAATTCTCGGAT 58.937 45.455 0.00 0.00 32.49 4.18
4802 4970 2.473816 CGCATAGCTGAAATTCTCGGA 58.526 47.619 0.00 0.00 31.20 4.55
4803 4971 1.528586 CCGCATAGCTGAAATTCTCGG 59.471 52.381 0.00 0.00 0.00 4.63
4804 4972 1.070309 GCCGCATAGCTGAAATTCTCG 60.070 52.381 0.00 0.00 0.00 4.04
4805 4973 1.070309 CGCCGCATAGCTGAAATTCTC 60.070 52.381 0.00 0.00 0.00 2.87
4806 4974 0.940126 CGCCGCATAGCTGAAATTCT 59.060 50.000 0.00 0.00 0.00 2.40
4807 4975 0.657840 ACGCCGCATAGCTGAAATTC 59.342 50.000 0.00 0.00 0.00 2.17
4808 4976 1.094785 AACGCCGCATAGCTGAAATT 58.905 45.000 0.00 0.00 0.00 1.82
4809 4977 1.867233 CTAACGCCGCATAGCTGAAAT 59.133 47.619 0.00 0.00 0.00 2.17
4810 4978 1.286501 CTAACGCCGCATAGCTGAAA 58.713 50.000 0.00 0.00 0.00 2.69
4851 5019 1.078918 CTGCCAGAACATCGCCTGA 60.079 57.895 0.00 0.00 32.37 3.86
4854 5022 3.512516 GGCTGCCAGAACATCGCC 61.513 66.667 15.17 0.00 0.00 5.54
4953 5121 3.776340 TGAGCTTACGTTGCAATCGATA 58.224 40.909 22.26 11.49 0.00 2.92
5000 5168 3.323751 TGAGCGATGATGATACCCATG 57.676 47.619 0.00 0.00 35.17 3.66
5053 5221 4.227134 CCTGGACCGGCGAGGATG 62.227 72.222 17.87 0.00 44.66 3.51
5168 5336 4.008330 TGAGCTACTACTAAACAGACGCT 58.992 43.478 0.00 0.00 0.00 5.07
5196 5367 1.541147 ACAATGAACCGATGCCAAGTG 59.459 47.619 0.00 0.00 0.00 3.16
5247 5418 4.494484 CAGGATACAGTGATGACGTGAAA 58.506 43.478 0.00 0.00 41.41 2.69
5248 5419 3.676049 GCAGGATACAGTGATGACGTGAA 60.676 47.826 0.00 0.00 41.41 3.18
5249 5420 2.159240 GCAGGATACAGTGATGACGTGA 60.159 50.000 0.00 0.00 41.41 4.35
5250 5421 2.159184 AGCAGGATACAGTGATGACGTG 60.159 50.000 0.00 0.00 41.41 4.49
5301 5477 2.162681 CACCAGGGTGTCAGGAAAATC 58.837 52.381 10.34 0.00 40.91 2.17
5334 5510 1.032014 ACAATGGAACTGGCACACAC 58.968 50.000 0.00 0.00 0.00 3.82
5383 5563 0.578683 CATGAAGGCGTACATCAGCG 59.421 55.000 0.00 0.00 0.00 5.18
5394 5574 1.079612 GCAACTTGGGCATGAAGGC 60.080 57.895 0.00 0.00 43.27 4.35
5441 5621 7.853492 TAGTCAGAGACGAACGATTTGCTCG 62.853 48.000 0.14 0.00 44.35 5.03
5458 5638 3.951680 TGCCTGTTCGTCATATAGTCAGA 59.048 43.478 0.00 0.00 0.00 3.27
5467 5647 1.271325 TGGATGTTGCCTGTTCGTCAT 60.271 47.619 0.00 0.00 0.00 3.06
5468 5648 0.107643 TGGATGTTGCCTGTTCGTCA 59.892 50.000 0.00 0.00 0.00 4.35
5469 5649 1.234821 TTGGATGTTGCCTGTTCGTC 58.765 50.000 0.00 0.00 0.00 4.20
5470 5650 1.336755 GTTTGGATGTTGCCTGTTCGT 59.663 47.619 0.00 0.00 0.00 3.85
5472 5652 1.000843 GGGTTTGGATGTTGCCTGTTC 59.999 52.381 0.00 0.00 0.00 3.18
5473 5653 1.047801 GGGTTTGGATGTTGCCTGTT 58.952 50.000 0.00 0.00 0.00 3.16
5474 5654 0.188342 AGGGTTTGGATGTTGCCTGT 59.812 50.000 0.00 0.00 0.00 4.00
5560 5751 2.775856 GGAGGATGCGTGCGAGAGA 61.776 63.158 0.00 0.00 0.00 3.10
5570 5761 0.881118 TTGTTTTCTGCGGAGGATGC 59.119 50.000 3.37 0.00 0.00 3.91
5578 5769 2.577449 AAAGGTGGTTGTTTTCTGCG 57.423 45.000 0.00 0.00 0.00 5.18
5604 5795 1.587034 GAAAAGAACGCGGAGGTATCG 59.413 52.381 12.47 0.00 0.00 2.92
5612 5803 1.962306 TTCGGGGAAAAGAACGCGG 60.962 57.895 12.47 0.00 42.35 6.46
5626 5817 2.722116 CCGGAAATTTTTCAACGTTCGG 59.278 45.455 0.00 0.00 38.92 4.30
5652 5843 4.411256 AGAACAAAGTAACTTGTCCGGA 57.589 40.909 0.00 0.00 38.59 5.14
5655 5846 6.764560 TGACCTTAGAACAAAGTAACTTGTCC 59.235 38.462 0.00 0.00 38.59 4.02
5669 5860 3.371285 GGCGTTGAAGATGACCTTAGAAC 59.629 47.826 0.00 0.00 34.68 3.01
5671 5862 2.416836 CGGCGTTGAAGATGACCTTAGA 60.417 50.000 0.00 0.00 34.68 2.10
5672 5863 1.927174 CGGCGTTGAAGATGACCTTAG 59.073 52.381 0.00 0.00 34.68 2.18
5673 5864 1.404986 CCGGCGTTGAAGATGACCTTA 60.405 52.381 6.01 0.00 34.68 2.69
5674 5865 0.673644 CCGGCGTTGAAGATGACCTT 60.674 55.000 6.01 0.00 37.93 3.50
5675 5866 1.079127 CCGGCGTTGAAGATGACCT 60.079 57.895 6.01 0.00 0.00 3.85
5676 5867 1.359459 GACCGGCGTTGAAGATGACC 61.359 60.000 6.01 0.00 0.00 4.02
5677 5868 0.389948 AGACCGGCGTTGAAGATGAC 60.390 55.000 6.01 0.00 0.00 3.06
5678 5869 0.389817 CAGACCGGCGTTGAAGATGA 60.390 55.000 6.01 0.00 0.00 2.92
5679 5870 0.670546 ACAGACCGGCGTTGAAGATG 60.671 55.000 6.01 0.00 0.00 2.90
5680 5871 0.892755 TACAGACCGGCGTTGAAGAT 59.107 50.000 6.01 0.00 0.00 2.40
5681 5872 0.675083 TTACAGACCGGCGTTGAAGA 59.325 50.000 6.01 0.00 0.00 2.87
5682 5873 1.193874 GTTTACAGACCGGCGTTGAAG 59.806 52.381 6.01 0.00 0.00 3.02
5684 5875 0.390124 AGTTTACAGACCGGCGTTGA 59.610 50.000 6.01 0.00 0.00 3.18
5685 5876 1.990563 CTAGTTTACAGACCGGCGTTG 59.009 52.381 6.01 3.84 0.00 4.10
5686 5877 1.888512 TCTAGTTTACAGACCGGCGTT 59.111 47.619 6.01 0.00 0.00 4.84
5687 5878 1.200948 GTCTAGTTTACAGACCGGCGT 59.799 52.381 6.01 0.00 37.11 5.68
5688 5879 1.200716 TGTCTAGTTTACAGACCGGCG 59.799 52.381 0.00 0.00 41.46 6.46
5689 5880 2.603953 GTGTCTAGTTTACAGACCGGC 58.396 52.381 0.00 0.00 41.46 6.13
5692 5883 2.029649 TGCGGTGTCTAGTTTACAGACC 60.030 50.000 0.38 0.00 41.46 3.85
5693 5884 3.293311 TGCGGTGTCTAGTTTACAGAC 57.707 47.619 0.00 0.00 42.31 3.51
5694 5885 3.762288 AGATGCGGTGTCTAGTTTACAGA 59.238 43.478 0.00 0.00 0.00 3.41
5695 5886 4.111375 AGATGCGGTGTCTAGTTTACAG 57.889 45.455 0.00 0.00 0.00 2.74
5696 5887 5.847111 ATAGATGCGGTGTCTAGTTTACA 57.153 39.130 0.00 0.00 32.15 2.41
5711 5902 4.058817 CCCTTCTGTCCGTAAATAGATGC 58.941 47.826 0.00 0.00 0.00 3.91
5734 5925 2.289945 GCATCCATATCCACAGACTCCC 60.290 54.545 0.00 0.00 0.00 4.30
5735 5926 2.611473 CGCATCCATATCCACAGACTCC 60.611 54.545 0.00 0.00 0.00 3.85
5736 5927 2.611473 CCGCATCCATATCCACAGACTC 60.611 54.545 0.00 0.00 0.00 3.36
5741 5932 1.135960 TTCCCGCATCCATATCCACA 58.864 50.000 0.00 0.00 0.00 4.17
5742 5933 2.489329 CAATTCCCGCATCCATATCCAC 59.511 50.000 0.00 0.00 0.00 4.02
5747 5938 0.539438 GGCCAATTCCCGCATCCATA 60.539 55.000 0.00 0.00 0.00 2.74
5749 5940 2.441901 GGCCAATTCCCGCATCCA 60.442 61.111 0.00 0.00 0.00 3.41
5754 5945 2.994417 TGGTTGGCCAATTCCCGC 60.994 61.111 23.66 7.26 42.83 6.13
5829 6020 6.389091 TCAAGTTTCAATGAAATTCATCGGG 58.611 36.000 11.87 2.83 35.76 5.14
5830 6021 7.872163 TTCAAGTTTCAATGAAATTCATCGG 57.128 32.000 11.87 5.23 35.76 4.18
5870 6953 6.429692 TGCAAATATATCGAAAATCATCCGGT 59.570 34.615 0.00 0.00 0.00 5.28
5878 6961 7.117812 CCGGTCTAGTGCAAATATATCGAAAAT 59.882 37.037 0.00 0.00 0.00 1.82
5911 6994 3.186283 TGGTGGTCATTTTAGGCTAGGA 58.814 45.455 0.00 0.00 0.00 2.94
5972 7055 1.888436 CTGGTAGGCTGCGAAGGTGA 61.888 60.000 0.00 0.00 0.00 4.02
5973 7056 1.448540 CTGGTAGGCTGCGAAGGTG 60.449 63.158 0.00 0.00 0.00 4.00
5975 7058 2.512515 GCTGGTAGGCTGCGAAGG 60.513 66.667 0.00 0.00 0.00 3.46
6004 7109 2.106938 GCGGGCTCATCATCGTCA 59.893 61.111 0.00 0.00 0.00 4.35
6008 7113 2.550101 GCTTGGCGGGCTCATCATC 61.550 63.158 2.38 0.00 0.00 2.92
6040 7145 2.258726 GGCCACCGCTCTTTCGTTT 61.259 57.895 0.00 0.00 34.44 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.