Multiple sequence alignment - TraesCS2B01G169200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G169200 | chr2B | 100.000 | 4606 | 0 | 0 | 611 | 5216 | 141985749 | 141990354 | 0.000000e+00 | 8506 |
1 | TraesCS2B01G169200 | chr2B | 100.000 | 352 | 0 | 0 | 1 | 352 | 141985139 | 141985490 | 0.000000e+00 | 651 |
2 | TraesCS2B01G169200 | chr2B | 99.265 | 136 | 1 | 0 | 2019 | 2154 | 141987025 | 141987160 | 4.030000e-61 | 246 |
3 | TraesCS2B01G169200 | chr2B | 99.265 | 136 | 1 | 0 | 1887 | 2022 | 141987157 | 141987292 | 4.030000e-61 | 246 |
4 | TraesCS2B01G169200 | chr2A | 94.357 | 3119 | 141 | 19 | 2020 | 5129 | 89119045 | 89122137 | 0.000000e+00 | 4752 |
5 | TraesCS2B01G169200 | chr2A | 92.397 | 947 | 42 | 12 | 1078 | 2022 | 89118261 | 89119179 | 0.000000e+00 | 1323 |
6 | TraesCS2B01G169200 | chr2A | 85.352 | 355 | 34 | 8 | 1 | 352 | 89114369 | 89114708 | 8.310000e-93 | 351 |
7 | TraesCS2B01G169200 | chr2A | 93.478 | 92 | 5 | 1 | 873 | 963 | 89117691 | 89117782 | 9.110000e-28 | 135 |
8 | TraesCS2B01G169200 | chr2A | 97.143 | 70 | 2 | 0 | 5147 | 5216 | 89122131 | 89122200 | 9.180000e-23 | 119 |
9 | TraesCS2B01G169200 | chr2D | 95.507 | 2404 | 93 | 11 | 2020 | 4417 | 89386980 | 89389374 | 0.000000e+00 | 3827 |
10 | TraesCS2B01G169200 | chr2D | 94.976 | 1055 | 50 | 3 | 971 | 2022 | 89386059 | 89387113 | 0.000000e+00 | 1652 |
11 | TraesCS2B01G169200 | chr7D | 80.723 | 166 | 28 | 4 | 2894 | 3058 | 60671104 | 60671266 | 5.480000e-25 | 126 |
12 | TraesCS2B01G169200 | chr7B | 80.723 | 166 | 28 | 4 | 2894 | 3058 | 3174044 | 3174206 | 5.480000e-25 | 126 |
13 | TraesCS2B01G169200 | chr7A | 80.120 | 166 | 29 | 4 | 2894 | 3058 | 64925934 | 64926096 | 2.550000e-23 | 121 |
14 | TraesCS2B01G169200 | chr3D | 80.503 | 159 | 29 | 2 | 2901 | 3058 | 225852514 | 225852357 | 2.550000e-23 | 121 |
15 | TraesCS2B01G169200 | chr3A | 80.503 | 159 | 29 | 2 | 2901 | 3058 | 264025371 | 264025214 | 2.550000e-23 | 121 |
16 | TraesCS2B01G169200 | chr3B | 79.518 | 166 | 30 | 4 | 2894 | 3058 | 299144094 | 299144256 | 1.190000e-21 | 115 |
17 | TraesCS2B01G169200 | chr6B | 79.747 | 158 | 30 | 2 | 2902 | 3058 | 51908777 | 51908621 | 4.270000e-21 | 113 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G169200 | chr2B | 141985139 | 141990354 | 5215 | False | 2412.25 | 8506 | 99.6325 | 1 | 5216 | 4 | chr2B.!!$F1 | 5215 |
1 | TraesCS2B01G169200 | chr2A | 89114369 | 89122200 | 7831 | False | 1336.00 | 4752 | 92.5454 | 1 | 5216 | 5 | chr2A.!!$F1 | 5215 |
2 | TraesCS2B01G169200 | chr2D | 89386059 | 89389374 | 3315 | False | 2739.50 | 3827 | 95.2415 | 971 | 4417 | 2 | chr2D.!!$F1 | 3446 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
48 | 49 | 0.107456 | GTCGCATGAGGGGATGTCAT | 59.893 | 55.000 | 0.00 | 0.0 | 40.92 | 3.06 | F |
944 | 3614 | 0.107643 | GGCCCAGAGCTATTGACCTC | 59.892 | 60.000 | 0.00 | 0.0 | 43.05 | 3.85 | F |
1591 | 4643 | 0.884704 | TCGCTCCAGGTTTGCTGTTC | 60.885 | 55.000 | 0.00 | 0.0 | 0.00 | 3.18 | F |
2113 | 5166 | 0.917533 | AGAACCATGAGGCATGAGCT | 59.082 | 50.000 | 8.87 | 0.0 | 43.81 | 4.09 | F |
2116 | 5169 | 1.504912 | ACCATGAGGCATGAGCTACT | 58.495 | 50.000 | 8.87 | 0.0 | 43.81 | 2.57 | F |
2313 | 5366 | 1.620323 | CATCGATCTGGTATGGCTCCA | 59.380 | 52.381 | 0.00 | 0.0 | 0.00 | 3.86 | F |
3547 | 6604 | 1.722011 | ACTGGTTATTCGGCAACTCG | 58.278 | 50.000 | 0.00 | 0.0 | 0.00 | 4.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1066 | 3736 | 0.255033 | AGGCGAGGTGGGGTTTAATC | 59.745 | 55.000 | 0.00 | 0.00 | 0.00 | 1.75 | R |
2094 | 5147 | 0.917533 | AGCTCATGCCTCATGGTTCT | 59.082 | 50.000 | 6.92 | 0.43 | 41.66 | 3.01 | R |
2611 | 5665 | 1.954927 | GAAGGACCTTCCCGCTAATG | 58.045 | 55.000 | 21.88 | 0.00 | 37.19 | 1.90 | R |
3959 | 7016 | 0.110486 | AAATGTTCCAGGTCGCCACT | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 | R |
3968 | 7025 | 5.629020 | CCAAAACATACGTCAAATGTTCCAG | 59.371 | 40.000 | 13.95 | 8.16 | 44.66 | 3.86 | R |
4137 | 7194 | 3.006323 | AGAGTACAAGACAGGACTGCTTG | 59.994 | 47.826 | 22.81 | 22.81 | 43.55 | 4.01 | R |
4963 | 8031 | 0.037303 | CTGGAGCAGGCCTTCAAAGA | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
47 | 48 | 1.522092 | GTCGCATGAGGGGATGTCA | 59.478 | 57.895 | 0.00 | 0.00 | 40.92 | 3.58 |
48 | 49 | 0.107456 | GTCGCATGAGGGGATGTCAT | 59.893 | 55.000 | 0.00 | 0.00 | 40.92 | 3.06 |
58 | 59 | 1.325355 | GGGATGTCATCATTGGGCAG | 58.675 | 55.000 | 14.72 | 0.00 | 34.06 | 4.85 |
59 | 60 | 0.672342 | GGATGTCATCATTGGGCAGC | 59.328 | 55.000 | 14.72 | 0.00 | 34.06 | 5.25 |
60 | 61 | 1.395635 | GATGTCATCATTGGGCAGCA | 58.604 | 50.000 | 8.00 | 0.00 | 34.06 | 4.41 |
61 | 62 | 1.961394 | GATGTCATCATTGGGCAGCAT | 59.039 | 47.619 | 8.00 | 0.00 | 34.06 | 3.79 |
62 | 63 | 1.107945 | TGTCATCATTGGGCAGCATG | 58.892 | 50.000 | 0.00 | 0.00 | 40.87 | 4.06 |
63 | 64 | 1.341187 | TGTCATCATTGGGCAGCATGA | 60.341 | 47.619 | 0.00 | 0.00 | 39.69 | 3.07 |
74 | 75 | 2.846039 | GCAGCATGACATTGAAGGAG | 57.154 | 50.000 | 0.00 | 0.00 | 39.69 | 3.69 |
75 | 76 | 2.362736 | GCAGCATGACATTGAAGGAGA | 58.637 | 47.619 | 0.00 | 0.00 | 39.69 | 3.71 |
76 | 77 | 2.950309 | GCAGCATGACATTGAAGGAGAT | 59.050 | 45.455 | 0.00 | 0.00 | 39.69 | 2.75 |
77 | 78 | 3.243101 | GCAGCATGACATTGAAGGAGATG | 60.243 | 47.826 | 0.00 | 0.00 | 39.69 | 2.90 |
78 | 79 | 3.945921 | CAGCATGACATTGAAGGAGATGT | 59.054 | 43.478 | 0.00 | 0.00 | 39.69 | 3.06 |
79 | 80 | 4.398358 | CAGCATGACATTGAAGGAGATGTT | 59.602 | 41.667 | 0.00 | 0.00 | 39.69 | 2.71 |
80 | 81 | 4.398358 | AGCATGACATTGAAGGAGATGTTG | 59.602 | 41.667 | 0.00 | 0.00 | 36.67 | 3.33 |
81 | 82 | 4.397103 | GCATGACATTGAAGGAGATGTTGA | 59.603 | 41.667 | 0.00 | 0.00 | 36.67 | 3.18 |
86 | 87 | 6.072342 | TGACATTGAAGGAGATGTTGAATGTG | 60.072 | 38.462 | 5.55 | 0.00 | 40.43 | 3.21 |
89 | 90 | 5.183530 | TGAAGGAGATGTTGAATGTGGAT | 57.816 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
99 | 100 | 1.106285 | GAATGTGGATTGTGGCCTCC | 58.894 | 55.000 | 3.32 | 2.38 | 0.00 | 4.30 |
114 | 115 | 1.486211 | CCTCCCGTTCTCCACTATGT | 58.514 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
131 | 132 | 0.614979 | TGTGTGGAGCCCTCTACCTC | 60.615 | 60.000 | 8.96 | 4.02 | 39.91 | 3.85 |
153 | 154 | 3.182967 | GAGGAGTACGAGTTCAAGCATG | 58.817 | 50.000 | 0.00 | 0.00 | 0.00 | 4.06 |
160 | 161 | 0.109412 | GAGTTCAAGCATGGCAGTGC | 60.109 | 55.000 | 6.55 | 6.55 | 45.38 | 4.40 |
173 | 174 | 0.108138 | GCAGTGCCACCTATCGTCTT | 60.108 | 55.000 | 2.85 | 0.00 | 0.00 | 3.01 |
174 | 175 | 1.676014 | GCAGTGCCACCTATCGTCTTT | 60.676 | 52.381 | 2.85 | 0.00 | 0.00 | 2.52 |
175 | 176 | 2.002586 | CAGTGCCACCTATCGTCTTTG | 58.997 | 52.381 | 0.00 | 0.00 | 0.00 | 2.77 |
183 | 184 | 2.271800 | CCTATCGTCTTTGCTCACCAC | 58.728 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
293 | 294 | 2.344535 | GCACAAGGCACCATCTGTT | 58.655 | 52.632 | 0.00 | 0.00 | 43.97 | 3.16 |
296 | 297 | 1.267806 | CACAAGGCACCATCTGTTGAC | 59.732 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
297 | 298 | 1.133823 | ACAAGGCACCATCTGTTGACA | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
306 | 307 | 2.224621 | CCATCTGTTGACACAAGGGAGT | 60.225 | 50.000 | 0.00 | 0.00 | 30.36 | 3.85 |
313 | 317 | 4.202223 | TGTTGACACAAGGGAGTAGAAGAC | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
314 | 318 | 3.572642 | TGACACAAGGGAGTAGAAGACA | 58.427 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
317 | 321 | 3.967987 | ACACAAGGGAGTAGAAGACAACT | 59.032 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
318 | 322 | 5.145564 | ACACAAGGGAGTAGAAGACAACTA | 58.854 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
325 | 329 | 5.653330 | GGGAGTAGAAGACAACTAAGCTACT | 59.347 | 44.000 | 0.00 | 0.00 | 37.87 | 2.57 |
338 | 342 | 4.654724 | ACTAAGCTACTGGAGGGTATTTCC | 59.345 | 45.833 | 0.00 | 0.00 | 35.20 | 3.13 |
339 | 343 | 3.423058 | AGCTACTGGAGGGTATTTCCT | 57.577 | 47.619 | 0.00 | 0.00 | 40.43 | 3.36 |
347 | 351 | 4.728772 | TGGAGGGTATTTCCTAATGCATG | 58.271 | 43.478 | 0.00 | 0.00 | 37.25 | 4.06 |
646 | 2353 | 7.951591 | ACATATATTTGGCTTAAACCCACATC | 58.048 | 34.615 | 0.00 | 0.00 | 30.65 | 3.06 |
653 | 2360 | 4.947388 | TGGCTTAAACCCACATCAATCTAC | 59.053 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
674 | 2381 | 4.985538 | ACACCACATCATCTTGTAAACCT | 58.014 | 39.130 | 0.00 | 0.00 | 0.00 | 3.50 |
803 | 3440 | 9.883142 | ACTTTCTTCCATTCAATGTTTTGTTTA | 57.117 | 25.926 | 0.00 | 0.00 | 34.32 | 2.01 |
890 | 3560 | 1.759299 | AGGCCGGCCTGTAATACGA | 60.759 | 57.895 | 46.71 | 0.00 | 46.22 | 3.43 |
893 | 3563 | 1.156034 | GCCGGCCTGTAATACGAACC | 61.156 | 60.000 | 18.11 | 0.00 | 0.00 | 3.62 |
898 | 3568 | 1.067516 | GCCTGTAATACGAACCCGCTA | 59.932 | 52.381 | 0.00 | 0.00 | 39.95 | 4.26 |
944 | 3614 | 0.107643 | GGCCCAGAGCTATTGACCTC | 59.892 | 60.000 | 0.00 | 0.00 | 43.05 | 3.85 |
947 | 3617 | 1.694048 | CCCAGAGCTATTGACCTCCCT | 60.694 | 57.143 | 0.00 | 0.00 | 0.00 | 4.20 |
949 | 3619 | 2.676748 | CAGAGCTATTGACCTCCCTCT | 58.323 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
950 | 3620 | 2.627699 | CAGAGCTATTGACCTCCCTCTC | 59.372 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
951 | 3621 | 2.517980 | AGAGCTATTGACCTCCCTCTCT | 59.482 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
952 | 3622 | 2.890945 | GAGCTATTGACCTCCCTCTCTC | 59.109 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
953 | 3623 | 2.517980 | AGCTATTGACCTCCCTCTCTCT | 59.482 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
954 | 3624 | 2.890945 | GCTATTGACCTCCCTCTCTCTC | 59.109 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
955 | 3625 | 3.436470 | GCTATTGACCTCCCTCTCTCTCT | 60.436 | 52.174 | 0.00 | 0.00 | 0.00 | 3.10 |
956 | 3626 | 2.818751 | TTGACCTCCCTCTCTCTCTC | 57.181 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
957 | 3627 | 1.979809 | TGACCTCCCTCTCTCTCTCT | 58.020 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
958 | 3628 | 1.843851 | TGACCTCCCTCTCTCTCTCTC | 59.156 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
959 | 3629 | 2.127708 | GACCTCCCTCTCTCTCTCTCT | 58.872 | 57.143 | 0.00 | 0.00 | 0.00 | 3.10 |
960 | 3630 | 2.104963 | GACCTCCCTCTCTCTCTCTCTC | 59.895 | 59.091 | 0.00 | 0.00 | 0.00 | 3.20 |
961 | 3631 | 2.293856 | ACCTCCCTCTCTCTCTCTCTCT | 60.294 | 54.545 | 0.00 | 0.00 | 0.00 | 3.10 |
962 | 3632 | 2.370189 | CCTCCCTCTCTCTCTCTCTCTC | 59.630 | 59.091 | 0.00 | 0.00 | 0.00 | 3.20 |
963 | 3633 | 3.312890 | CTCCCTCTCTCTCTCTCTCTCT | 58.687 | 54.545 | 0.00 | 0.00 | 0.00 | 3.10 |
964 | 3634 | 3.041211 | TCCCTCTCTCTCTCTCTCTCTG | 58.959 | 54.545 | 0.00 | 0.00 | 0.00 | 3.35 |
1002 | 3672 | 2.896443 | CTCCACTTCCTCCTCGGC | 59.104 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
1036 | 3706 | 2.803285 | TCTGGCTCATATCTCCCCTT | 57.197 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1053 | 3723 | 2.824388 | CTTCCCCTCCCCTCCTCGTT | 62.824 | 65.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1055 | 3725 | 2.764547 | CCCTCCCCTCCTCGTTCC | 60.765 | 72.222 | 0.00 | 0.00 | 0.00 | 3.62 |
1066 | 3736 | 3.685214 | CTCGTTCCCCTCAGACGCG | 62.685 | 68.421 | 3.53 | 3.53 | 36.77 | 6.01 |
1087 | 4137 | 1.360185 | TTAAACCCCACCTCGCCTAA | 58.640 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1089 | 4139 | 1.848886 | AAACCCCACCTCGCCTAAGG | 61.849 | 60.000 | 0.00 | 0.00 | 42.55 | 2.69 |
1129 | 4179 | 3.219928 | GGAGCAGGGATCGAGCGA | 61.220 | 66.667 | 0.00 | 0.00 | 0.00 | 4.93 |
1141 | 4191 | 3.077556 | GAGCGAGCAGAAGGGGGA | 61.078 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
1414 | 4465 | 3.505464 | AGTTTCGGAGATGTTCGGTAG | 57.495 | 47.619 | 0.00 | 0.00 | 35.04 | 3.18 |
1483 | 4535 | 2.470057 | TTTGGGATTCTTATGGGGGC | 57.530 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
1585 | 4637 | 1.009829 | GTGCTATCGCTCCAGGTTTG | 58.990 | 55.000 | 0.00 | 0.00 | 36.97 | 2.93 |
1591 | 4643 | 0.884704 | TCGCTCCAGGTTTGCTGTTC | 60.885 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1626 | 4678 | 7.489160 | ACTTGCAGTATTGTCAGTTATCGATA | 58.511 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
1660 | 4713 | 5.352284 | TCGCAATCTCTTATTCTCACCTTC | 58.648 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
1723 | 4776 | 3.502211 | GTGACCATACTGACTTTTGTGGG | 59.498 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
1736 | 4789 | 4.278419 | ACTTTTGTGGGAGTGCTGTATTTC | 59.722 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
1759 | 4812 | 4.957967 | CGCGTGTCTGTCAAATTGATTATC | 59.042 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
1763 | 4816 | 8.338259 | GCGTGTCTGTCAAATTGATTATCTATT | 58.662 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
1816 | 4869 | 3.367395 | GCCATTTCCTGTTTGAGTTAGGC | 60.367 | 47.826 | 0.00 | 0.00 | 0.00 | 3.93 |
1857 | 4910 | 6.701400 | GTGGAAATTAACTGTCAACATGCTTT | 59.299 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
1888 | 4941 | 4.665833 | ATGACCAGGAATTGAATGCATG | 57.334 | 40.909 | 0.00 | 0.00 | 0.00 | 4.06 |
1890 | 4943 | 3.025978 | GACCAGGAATTGAATGCATGGA | 58.974 | 45.455 | 22.75 | 0.00 | 0.00 | 3.41 |
1904 | 4957 | 3.439154 | TGCATGGATAACAACAATGGGT | 58.561 | 40.909 | 0.00 | 0.00 | 0.00 | 4.51 |
1996 | 5049 | 4.034975 | GCATGAGCTACTTTGGTGAGATTC | 59.965 | 45.833 | 0.00 | 0.00 | 37.91 | 2.52 |
1998 | 5051 | 5.227569 | TGAGCTACTTTGGTGAGATTCAA | 57.772 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
1999 | 5052 | 5.620206 | TGAGCTACTTTGGTGAGATTCAAA | 58.380 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
2000 | 5053 | 6.061441 | TGAGCTACTTTGGTGAGATTCAAAA | 58.939 | 36.000 | 0.00 | 0.00 | 33.24 | 2.44 |
2001 | 5054 | 6.545666 | TGAGCTACTTTGGTGAGATTCAAAAA | 59.454 | 34.615 | 0.00 | 0.00 | 33.24 | 1.94 |
2030 | 5083 | 9.967451 | TTAATTTCTGACCTATGGATAACAACA | 57.033 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
2031 | 5084 | 8.877864 | AATTTCTGACCTATGGATAACAACAA | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
2032 | 5085 | 9.479549 | AATTTCTGACCTATGGATAACAACAAT | 57.520 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
2033 | 5086 | 7.864108 | TTCTGACCTATGGATAACAACAATG | 57.136 | 36.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2034 | 5087 | 6.356556 | TCTGACCTATGGATAACAACAATGG | 58.643 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2035 | 5088 | 5.445069 | TGACCTATGGATAACAACAATGGG | 58.555 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
2036 | 5089 | 5.044476 | TGACCTATGGATAACAACAATGGGT | 60.044 | 40.000 | 0.00 | 0.00 | 0.00 | 4.51 |
2037 | 5090 | 6.158871 | TGACCTATGGATAACAACAATGGGTA | 59.841 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
2038 | 5091 | 6.601332 | ACCTATGGATAACAACAATGGGTAG | 58.399 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2039 | 5092 | 6.159751 | ACCTATGGATAACAACAATGGGTAGT | 59.840 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
2040 | 5093 | 7.348801 | ACCTATGGATAACAACAATGGGTAGTA | 59.651 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2041 | 5094 | 7.878127 | CCTATGGATAACAACAATGGGTAGTAG | 59.122 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
2042 | 5095 | 6.630203 | TGGATAACAACAATGGGTAGTAGT | 57.370 | 37.500 | 0.00 | 0.00 | 0.00 | 2.73 |
2043 | 5096 | 7.023171 | TGGATAACAACAATGGGTAGTAGTT | 57.977 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2044 | 5097 | 7.463431 | TGGATAACAACAATGGGTAGTAGTTT | 58.537 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
2045 | 5098 | 7.608761 | TGGATAACAACAATGGGTAGTAGTTTC | 59.391 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
2046 | 5099 | 7.066645 | GGATAACAACAATGGGTAGTAGTTTCC | 59.933 | 40.741 | 0.00 | 0.00 | 0.00 | 3.13 |
2047 | 5100 | 4.659115 | ACAACAATGGGTAGTAGTTTCCC | 58.341 | 43.478 | 4.19 | 4.19 | 41.41 | 3.97 |
2048 | 5101 | 4.352893 | ACAACAATGGGTAGTAGTTTCCCT | 59.647 | 41.667 | 10.55 | 0.00 | 41.58 | 4.20 |
2049 | 5102 | 5.163023 | ACAACAATGGGTAGTAGTTTCCCTT | 60.163 | 40.000 | 10.55 | 3.62 | 41.58 | 3.95 |
2050 | 5103 | 5.175388 | ACAATGGGTAGTAGTTTCCCTTC | 57.825 | 43.478 | 10.55 | 0.00 | 41.58 | 3.46 |
2051 | 5104 | 4.600111 | ACAATGGGTAGTAGTTTCCCTTCA | 59.400 | 41.667 | 10.55 | 0.00 | 41.58 | 3.02 |
2052 | 5105 | 4.838904 | ATGGGTAGTAGTTTCCCTTCAC | 57.161 | 45.455 | 10.55 | 0.00 | 41.58 | 3.18 |
2053 | 5106 | 3.865571 | TGGGTAGTAGTTTCCCTTCACT | 58.134 | 45.455 | 10.55 | 0.00 | 41.58 | 3.41 |
2054 | 5107 | 5.014534 | TGGGTAGTAGTTTCCCTTCACTA | 57.985 | 43.478 | 10.55 | 0.00 | 41.58 | 2.74 |
2055 | 5108 | 5.596763 | TGGGTAGTAGTTTCCCTTCACTAT | 58.403 | 41.667 | 10.55 | 0.00 | 41.58 | 2.12 |
2056 | 5109 | 6.027482 | TGGGTAGTAGTTTCCCTTCACTATT | 58.973 | 40.000 | 10.55 | 0.00 | 41.58 | 1.73 |
2057 | 5110 | 6.502863 | TGGGTAGTAGTTTCCCTTCACTATTT | 59.497 | 38.462 | 10.55 | 0.00 | 41.58 | 1.40 |
2058 | 5111 | 6.822170 | GGGTAGTAGTTTCCCTTCACTATTTG | 59.178 | 42.308 | 0.00 | 0.00 | 38.29 | 2.32 |
2059 | 5112 | 7.310858 | GGGTAGTAGTTTCCCTTCACTATTTGA | 60.311 | 40.741 | 0.00 | 0.00 | 38.29 | 2.69 |
2060 | 5113 | 8.098912 | GGTAGTAGTTTCCCTTCACTATTTGAA | 58.901 | 37.037 | 0.00 | 0.00 | 42.26 | 2.69 |
2069 | 5122 | 4.640771 | TTCACTATTTGAAGGCTCCTGT | 57.359 | 40.909 | 0.00 | 0.00 | 39.45 | 4.00 |
2070 | 5123 | 3.942829 | TCACTATTTGAAGGCTCCTGTG | 58.057 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
2071 | 5124 | 3.327757 | TCACTATTTGAAGGCTCCTGTGT | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
2072 | 5125 | 4.530553 | TCACTATTTGAAGGCTCCTGTGTA | 59.469 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2073 | 5126 | 4.631813 | CACTATTTGAAGGCTCCTGTGTAC | 59.368 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
2074 | 5127 | 2.561478 | TTTGAAGGCTCCTGTGTACC | 57.439 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2075 | 5128 | 1.729586 | TTGAAGGCTCCTGTGTACCT | 58.270 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2076 | 5129 | 2.615986 | TGAAGGCTCCTGTGTACCTA | 57.384 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2077 | 5130 | 3.116096 | TGAAGGCTCCTGTGTACCTAT | 57.884 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2078 | 5131 | 3.031736 | TGAAGGCTCCTGTGTACCTATC | 58.968 | 50.000 | 0.00 | 0.00 | 0.00 | 2.08 |
2079 | 5132 | 3.301274 | GAAGGCTCCTGTGTACCTATCT | 58.699 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2080 | 5133 | 3.406512 | AGGCTCCTGTGTACCTATCTT | 57.593 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
2081 | 5134 | 3.034635 | AGGCTCCTGTGTACCTATCTTG | 58.965 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2082 | 5135 | 3.031736 | GGCTCCTGTGTACCTATCTTGA | 58.968 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2083 | 5136 | 3.643792 | GGCTCCTGTGTACCTATCTTGAT | 59.356 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
2084 | 5137 | 4.262249 | GGCTCCTGTGTACCTATCTTGATC | 60.262 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2085 | 5138 | 4.557695 | GCTCCTGTGTACCTATCTTGATCG | 60.558 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2086 | 5139 | 4.788679 | TCCTGTGTACCTATCTTGATCGA | 58.211 | 43.478 | 0.00 | 0.00 | 0.00 | 3.59 |
2087 | 5140 | 5.386060 | TCCTGTGTACCTATCTTGATCGAT | 58.614 | 41.667 | 0.00 | 0.00 | 0.00 | 3.59 |
2088 | 5141 | 5.473846 | TCCTGTGTACCTATCTTGATCGATC | 59.526 | 44.000 | 18.72 | 18.72 | 0.00 | 3.69 |
2089 | 5142 | 5.241728 | CCTGTGTACCTATCTTGATCGATCA | 59.758 | 44.000 | 23.99 | 23.99 | 34.44 | 2.92 |
2090 | 5143 | 6.071672 | CCTGTGTACCTATCTTGATCGATCAT | 60.072 | 42.308 | 27.75 | 16.13 | 36.56 | 2.45 |
2091 | 5144 | 7.290110 | TGTGTACCTATCTTGATCGATCATT | 57.710 | 36.000 | 27.75 | 17.59 | 36.56 | 2.57 |
2092 | 5145 | 7.147976 | TGTGTACCTATCTTGATCGATCATTG | 58.852 | 38.462 | 27.75 | 21.89 | 36.56 | 2.82 |
2093 | 5146 | 7.148641 | GTGTACCTATCTTGATCGATCATTGT | 58.851 | 38.462 | 27.75 | 17.82 | 36.56 | 2.71 |
2094 | 5147 | 8.297426 | GTGTACCTATCTTGATCGATCATTGTA | 58.703 | 37.037 | 27.75 | 17.97 | 36.56 | 2.41 |
2095 | 5148 | 8.515414 | TGTACCTATCTTGATCGATCATTGTAG | 58.485 | 37.037 | 27.75 | 24.21 | 36.56 | 2.74 |
2096 | 5149 | 7.767250 | ACCTATCTTGATCGATCATTGTAGA | 57.233 | 36.000 | 27.75 | 25.08 | 36.56 | 2.59 |
2097 | 5150 | 8.183104 | ACCTATCTTGATCGATCATTGTAGAA | 57.817 | 34.615 | 27.75 | 15.55 | 36.56 | 2.10 |
2098 | 5151 | 8.085296 | ACCTATCTTGATCGATCATTGTAGAAC | 58.915 | 37.037 | 27.75 | 0.00 | 36.56 | 3.01 |
2099 | 5152 | 7.543868 | CCTATCTTGATCGATCATTGTAGAACC | 59.456 | 40.741 | 27.75 | 0.00 | 36.56 | 3.62 |
2100 | 5153 | 6.220726 | TCTTGATCGATCATTGTAGAACCA | 57.779 | 37.500 | 27.75 | 8.74 | 36.56 | 3.67 |
2101 | 5154 | 6.820335 | TCTTGATCGATCATTGTAGAACCAT | 58.180 | 36.000 | 27.75 | 0.00 | 36.56 | 3.55 |
2102 | 5155 | 6.703165 | TCTTGATCGATCATTGTAGAACCATG | 59.297 | 38.462 | 27.75 | 5.57 | 36.56 | 3.66 |
2103 | 5156 | 6.160576 | TGATCGATCATTGTAGAACCATGA | 57.839 | 37.500 | 23.99 | 0.00 | 0.00 | 3.07 |
2104 | 5157 | 6.218746 | TGATCGATCATTGTAGAACCATGAG | 58.781 | 40.000 | 23.99 | 0.00 | 0.00 | 2.90 |
2105 | 5158 | 4.948847 | TCGATCATTGTAGAACCATGAGG | 58.051 | 43.478 | 0.00 | 0.00 | 42.21 | 3.86 |
2106 | 5159 | 3.496130 | CGATCATTGTAGAACCATGAGGC | 59.504 | 47.826 | 0.00 | 0.00 | 39.06 | 4.70 |
2107 | 5160 | 3.998913 | TCATTGTAGAACCATGAGGCA | 57.001 | 42.857 | 0.00 | 0.00 | 39.06 | 4.75 |
2108 | 5161 | 4.508551 | TCATTGTAGAACCATGAGGCAT | 57.491 | 40.909 | 0.00 | 0.00 | 39.06 | 4.40 |
2109 | 5162 | 4.201657 | TCATTGTAGAACCATGAGGCATG | 58.798 | 43.478 | 0.00 | 0.00 | 41.10 | 4.06 |
2110 | 5163 | 3.998913 | TTGTAGAACCATGAGGCATGA | 57.001 | 42.857 | 8.87 | 0.00 | 43.81 | 3.07 |
2111 | 5164 | 3.548745 | TGTAGAACCATGAGGCATGAG | 57.451 | 47.619 | 8.87 | 2.46 | 43.81 | 2.90 |
2112 | 5165 | 2.216898 | GTAGAACCATGAGGCATGAGC | 58.783 | 52.381 | 8.87 | 0.00 | 43.81 | 4.26 |
2113 | 5166 | 0.917533 | AGAACCATGAGGCATGAGCT | 59.082 | 50.000 | 8.87 | 0.00 | 43.81 | 4.09 |
2114 | 5167 | 2.121948 | AGAACCATGAGGCATGAGCTA | 58.878 | 47.619 | 8.87 | 0.00 | 43.81 | 3.32 |
2115 | 5168 | 2.158842 | AGAACCATGAGGCATGAGCTAC | 60.159 | 50.000 | 8.87 | 0.00 | 43.81 | 3.58 |
2116 | 5169 | 1.504912 | ACCATGAGGCATGAGCTACT | 58.495 | 50.000 | 8.87 | 0.00 | 43.81 | 2.57 |
2117 | 5170 | 1.842562 | ACCATGAGGCATGAGCTACTT | 59.157 | 47.619 | 8.87 | 0.00 | 43.81 | 2.24 |
2118 | 5171 | 2.240667 | ACCATGAGGCATGAGCTACTTT | 59.759 | 45.455 | 8.87 | 0.00 | 43.81 | 2.66 |
2119 | 5172 | 2.617308 | CCATGAGGCATGAGCTACTTTG | 59.383 | 50.000 | 8.87 | 0.00 | 43.81 | 2.77 |
2120 | 5173 | 2.408271 | TGAGGCATGAGCTACTTTGG | 57.592 | 50.000 | 0.00 | 0.00 | 41.70 | 3.28 |
2121 | 5174 | 1.630369 | TGAGGCATGAGCTACTTTGGT | 59.370 | 47.619 | 0.00 | 0.00 | 41.70 | 3.67 |
2122 | 5175 | 2.012673 | GAGGCATGAGCTACTTTGGTG | 58.987 | 52.381 | 0.00 | 0.00 | 41.70 | 4.17 |
2123 | 5176 | 1.630369 | AGGCATGAGCTACTTTGGTGA | 59.370 | 47.619 | 0.00 | 0.00 | 41.70 | 4.02 |
2124 | 5177 | 2.012673 | GGCATGAGCTACTTTGGTGAG | 58.987 | 52.381 | 0.00 | 0.00 | 41.70 | 3.51 |
2125 | 5178 | 2.355108 | GGCATGAGCTACTTTGGTGAGA | 60.355 | 50.000 | 0.00 | 0.00 | 41.70 | 3.27 |
2126 | 5179 | 3.539604 | GCATGAGCTACTTTGGTGAGAT | 58.460 | 45.455 | 0.00 | 0.00 | 37.91 | 2.75 |
2127 | 5180 | 3.944015 | GCATGAGCTACTTTGGTGAGATT | 59.056 | 43.478 | 0.00 | 0.00 | 37.91 | 2.40 |
2164 | 5217 | 3.146847 | CTGACCTGTGGTTACCCTTTTC | 58.853 | 50.000 | 0.00 | 0.00 | 35.25 | 2.29 |
2169 | 5222 | 4.352893 | ACCTGTGGTTACCCTTTTCTATGT | 59.647 | 41.667 | 0.00 | 0.00 | 27.29 | 2.29 |
2213 | 5266 | 6.515832 | TCGTACAGTCATGAGCATATTTGAT | 58.484 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2313 | 5366 | 1.620323 | CATCGATCTGGTATGGCTCCA | 59.380 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
2339 | 5392 | 3.071023 | TGAGAGGTAAACACTTCACCTGG | 59.929 | 47.826 | 0.00 | 0.00 | 42.78 | 4.45 |
2362 | 5415 | 5.183904 | GGCTAACCATGGTCATTCATTATCC | 59.816 | 44.000 | 20.07 | 6.24 | 35.26 | 2.59 |
2367 | 5420 | 6.617538 | ACCATGGTCATTCATTATCCTGATT | 58.382 | 36.000 | 13.00 | 0.00 | 0.00 | 2.57 |
2432 | 5485 | 4.197750 | GAGGTTCTCTAGGTGTCGATGTA | 58.802 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
2473 | 5527 | 9.696917 | ATTTTCTAAATGAACATGACTTTGACC | 57.303 | 29.630 | 0.00 | 0.00 | 33.88 | 4.02 |
2611 | 5665 | 6.142817 | CCTTGTACATGTTGCAAAGACTAAC | 58.857 | 40.000 | 2.30 | 0.00 | 0.00 | 2.34 |
2750 | 5804 | 8.017418 | TGGTTTACCTCATTTTCAAGACAATT | 57.983 | 30.769 | 0.00 | 0.00 | 36.82 | 2.32 |
2759 | 5813 | 9.459640 | CTCATTTTCAAGACAATTATGCTATGG | 57.540 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
2760 | 5814 | 7.922278 | TCATTTTCAAGACAATTATGCTATGGC | 59.078 | 33.333 | 0.00 | 0.00 | 39.26 | 4.40 |
2829 | 5885 | 6.176896 | TCCTCGTGATTGATTTGTGGATTTA | 58.823 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2834 | 5890 | 7.324856 | TCGTGATTGATTTGTGGATTTAAAACG | 59.675 | 33.333 | 0.00 | 0.00 | 0.00 | 3.60 |
2836 | 5892 | 7.116233 | GTGATTGATTTGTGGATTTAAAACGCT | 59.884 | 33.333 | 0.00 | 0.00 | 0.00 | 5.07 |
2961 | 6017 | 2.298729 | TGAAGCTTTTGTTGGTATGGGC | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 5.36 |
3186 | 6243 | 4.376146 | TGTCATTCTTCACGACATGTTGA | 58.624 | 39.130 | 20.26 | 8.15 | 34.83 | 3.18 |
3366 | 6423 | 9.241919 | TCAATCTGGAAGCTCAATAATGTTTAA | 57.758 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
3395 | 6452 | 9.738832 | CTAGCTCAATTTCTAGGTTAGACTTAC | 57.261 | 37.037 | 0.00 | 0.00 | 33.84 | 2.34 |
3412 | 6469 | 6.027749 | AGACTTACGTTTTTGCAAAGAACAG | 58.972 | 36.000 | 24.05 | 20.20 | 0.00 | 3.16 |
3547 | 6604 | 1.722011 | ACTGGTTATTCGGCAACTCG | 58.278 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3814 | 6871 | 4.336713 | AGGAAGAAGTTTGCTCACAAAGAC | 59.663 | 41.667 | 0.00 | 0.00 | 46.17 | 3.01 |
3829 | 6886 | 2.469274 | AAGACGAGGAGTACGACTCA | 57.531 | 50.000 | 16.54 | 0.00 | 46.79 | 3.41 |
3959 | 7016 | 6.826231 | TCGTAGGGATGCTTTGATTTTGATAA | 59.174 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
3968 | 7025 | 4.695217 | TTGATTTTGATAAGTGGCGACC | 57.305 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
4137 | 7194 | 5.611796 | TCTGTATGAAGTGCACATTGTTC | 57.388 | 39.130 | 21.04 | 14.17 | 0.00 | 3.18 |
4150 | 7207 | 2.880890 | ACATTGTTCAAGCAGTCCTGTC | 59.119 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
4206 | 7263 | 8.254508 | TCTGTTTGTTTTTAAATGGCTTACAGT | 58.745 | 29.630 | 0.00 | 0.00 | 0.00 | 3.55 |
4272 | 7329 | 3.297134 | TTGGCTTCCCTAATGATCACC | 57.703 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
4279 | 7336 | 6.352137 | GGCTTCCCTAATGATCACCAAATTTT | 60.352 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
4306 | 7363 | 4.163336 | ACATCGGCAATGTTGAAACATGC | 61.163 | 43.478 | 9.34 | 13.40 | 46.73 | 4.06 |
4417 | 7485 | 9.760660 | GTTGTGAATACTAGATTTTAGCAACTG | 57.239 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
4418 | 7486 | 8.492673 | TGTGAATACTAGATTTTAGCAACTGG | 57.507 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
4419 | 7487 | 8.318412 | TGTGAATACTAGATTTTAGCAACTGGA | 58.682 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
4420 | 7488 | 8.821894 | GTGAATACTAGATTTTAGCAACTGGAG | 58.178 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
4421 | 7489 | 8.540388 | TGAATACTAGATTTTAGCAACTGGAGT | 58.460 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
4434 | 7502 | 7.524717 | AGCAACTGGAGTATTTACAAAATGT | 57.475 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4457 | 7525 | 7.148641 | TGTTGTTTACTTGTTTTGTGATGTGT | 58.851 | 30.769 | 0.00 | 0.00 | 0.00 | 3.72 |
4458 | 7526 | 8.297426 | TGTTGTTTACTTGTTTTGTGATGTGTA | 58.703 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
4512 | 7580 | 7.806409 | AAGTTATATGCATGCTGTGTTGATA | 57.194 | 32.000 | 20.33 | 6.67 | 0.00 | 2.15 |
4518 | 7586 | 3.506844 | TGCATGCTGTGTTGATATTGTGT | 59.493 | 39.130 | 20.33 | 0.00 | 0.00 | 3.72 |
4527 | 7595 | 9.787532 | GCTGTGTTGATATTGTGTACATTTATT | 57.212 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
4583 | 7651 | 6.018669 | GCTAAGTATGCTTTTACTGCACTAGG | 60.019 | 42.308 | 0.00 | 0.00 | 43.59 | 3.02 |
4603 | 7671 | 2.821969 | GGACACCTCAGCAACATGATTT | 59.178 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
4607 | 7675 | 6.350445 | GGACACCTCAGCAACATGATTTATTT | 60.350 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
4666 | 7734 | 5.269991 | ACTACCTCTGACCAATAGCAGTAA | 58.730 | 41.667 | 0.00 | 0.00 | 33.90 | 2.24 |
4755 | 7823 | 4.758251 | TGCTCCACCGCCATGTCG | 62.758 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
4847 | 7915 | 3.139469 | GGTCCTCCCCTCGTCGAC | 61.139 | 72.222 | 5.18 | 5.18 | 0.00 | 4.20 |
4945 | 8013 | 2.809601 | CGTCACCGCCGAAGAAGG | 60.810 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
4966 | 8034 | 2.586792 | GGCCATCCGAGCACTCTT | 59.413 | 61.111 | 0.00 | 0.00 | 0.00 | 2.85 |
4967 | 8035 | 1.078143 | GGCCATCCGAGCACTCTTT | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
4976 | 8044 | 1.163554 | GAGCACTCTTTGAAGGCCTG | 58.836 | 55.000 | 5.69 | 0.00 | 0.00 | 4.85 |
4983 | 8051 | 0.251077 | CTTTGAAGGCCTGCTCCAGT | 60.251 | 55.000 | 13.40 | 0.00 | 0.00 | 4.00 |
5040 | 8108 | 2.024871 | CGCTCCTCCTAAGTCGCG | 59.975 | 66.667 | 0.00 | 0.00 | 34.47 | 5.87 |
5061 | 8129 | 4.856801 | ATCATGACGCGGCCCCAC | 62.857 | 66.667 | 10.82 | 0.00 | 0.00 | 4.61 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 2.501128 | CCCTCATGCGACCATCGT | 59.499 | 61.111 | 0.00 | 0.00 | 42.81 | 3.73 |
47 | 48 | 2.082140 | ATGTCATGCTGCCCAATGAT | 57.918 | 45.000 | 4.71 | 0.00 | 0.00 | 2.45 |
48 | 49 | 1.478916 | CAATGTCATGCTGCCCAATGA | 59.521 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
58 | 59 | 4.397103 | TCAACATCTCCTTCAATGTCATGC | 59.603 | 41.667 | 0.00 | 0.00 | 35.10 | 4.06 |
59 | 60 | 6.505044 | TTCAACATCTCCTTCAATGTCATG | 57.495 | 37.500 | 0.00 | 0.00 | 35.10 | 3.07 |
60 | 61 | 6.662234 | ACATTCAACATCTCCTTCAATGTCAT | 59.338 | 34.615 | 0.00 | 0.00 | 35.10 | 3.06 |
61 | 62 | 6.005823 | ACATTCAACATCTCCTTCAATGTCA | 58.994 | 36.000 | 0.00 | 0.00 | 35.10 | 3.58 |
62 | 63 | 6.320171 | CACATTCAACATCTCCTTCAATGTC | 58.680 | 40.000 | 0.00 | 0.00 | 35.10 | 3.06 |
63 | 64 | 5.184479 | CCACATTCAACATCTCCTTCAATGT | 59.816 | 40.000 | 0.00 | 0.00 | 37.71 | 2.71 |
65 | 66 | 5.573219 | TCCACATTCAACATCTCCTTCAAT | 58.427 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
66 | 67 | 4.984295 | TCCACATTCAACATCTCCTTCAA | 58.016 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
67 | 68 | 4.639078 | TCCACATTCAACATCTCCTTCA | 57.361 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
68 | 69 | 5.416952 | ACAATCCACATTCAACATCTCCTTC | 59.583 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
69 | 70 | 5.184479 | CACAATCCACATTCAACATCTCCTT | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
70 | 71 | 4.703575 | CACAATCCACATTCAACATCTCCT | 59.296 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
71 | 72 | 4.142315 | CCACAATCCACATTCAACATCTCC | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
72 | 73 | 4.676196 | GCCACAATCCACATTCAACATCTC | 60.676 | 45.833 | 0.00 | 0.00 | 0.00 | 2.75 |
73 | 74 | 3.194116 | GCCACAATCCACATTCAACATCT | 59.806 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
74 | 75 | 3.514645 | GCCACAATCCACATTCAACATC | 58.485 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
75 | 76 | 2.234414 | GGCCACAATCCACATTCAACAT | 59.766 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
76 | 77 | 1.617850 | GGCCACAATCCACATTCAACA | 59.382 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
77 | 78 | 1.895131 | AGGCCACAATCCACATTCAAC | 59.105 | 47.619 | 5.01 | 0.00 | 0.00 | 3.18 |
78 | 79 | 2.170166 | GAGGCCACAATCCACATTCAA | 58.830 | 47.619 | 5.01 | 0.00 | 0.00 | 2.69 |
79 | 80 | 1.616725 | GGAGGCCACAATCCACATTCA | 60.617 | 52.381 | 5.01 | 0.00 | 35.54 | 2.57 |
80 | 81 | 1.106285 | GGAGGCCACAATCCACATTC | 58.894 | 55.000 | 5.01 | 0.00 | 35.54 | 2.67 |
81 | 82 | 0.324645 | GGGAGGCCACAATCCACATT | 60.325 | 55.000 | 5.01 | 0.00 | 37.33 | 2.71 |
86 | 87 | 1.749258 | GAACGGGAGGCCACAATCC | 60.749 | 63.158 | 5.01 | 2.03 | 34.64 | 3.01 |
89 | 90 | 2.747686 | GAGAACGGGAGGCCACAA | 59.252 | 61.111 | 5.01 | 0.00 | 0.00 | 3.33 |
114 | 115 | 1.379977 | CGAGGTAGAGGGCTCCACA | 60.380 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
131 | 132 | 1.199327 | TGCTTGAACTCGTACTCCTCG | 59.801 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
153 | 154 | 1.521681 | GACGATAGGTGGCACTGCC | 60.522 | 63.158 | 18.45 | 13.68 | 46.43 | 4.85 |
160 | 161 | 2.271800 | GTGAGCAAAGACGATAGGTGG | 58.728 | 52.381 | 0.00 | 0.00 | 43.77 | 4.61 |
162 | 163 | 1.899814 | TGGTGAGCAAAGACGATAGGT | 59.100 | 47.619 | 0.00 | 0.00 | 43.77 | 3.08 |
167 | 168 | 0.531974 | GTGGTGGTGAGCAAAGACGA | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
168 | 169 | 1.831389 | CGTGGTGGTGAGCAAAGACG | 61.831 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
169 | 170 | 0.531974 | TCGTGGTGGTGAGCAAAGAC | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
173 | 174 | 0.753867 | TAACTCGTGGTGGTGAGCAA | 59.246 | 50.000 | 0.00 | 0.00 | 35.61 | 3.91 |
174 | 175 | 0.973632 | ATAACTCGTGGTGGTGAGCA | 59.026 | 50.000 | 0.00 | 0.00 | 35.61 | 4.26 |
175 | 176 | 1.204941 | AGATAACTCGTGGTGGTGAGC | 59.795 | 52.381 | 0.00 | 0.00 | 35.61 | 4.26 |
290 | 291 | 3.964688 | TCTTCTACTCCCTTGTGTCAACA | 59.035 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
293 | 294 | 3.572642 | TGTCTTCTACTCCCTTGTGTCA | 58.427 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
296 | 297 | 4.608948 | AGTTGTCTTCTACTCCCTTGTG | 57.391 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
297 | 298 | 5.279556 | GCTTAGTTGTCTTCTACTCCCTTGT | 60.280 | 44.000 | 0.00 | 0.00 | 32.55 | 3.16 |
306 | 307 | 5.652891 | CCTCCAGTAGCTTAGTTGTCTTCTA | 59.347 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
313 | 317 | 5.615925 | AATACCCTCCAGTAGCTTAGTTG | 57.384 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
314 | 318 | 5.130643 | GGAAATACCCTCCAGTAGCTTAGTT | 59.869 | 44.000 | 0.00 | 0.00 | 32.77 | 2.24 |
317 | 321 | 4.892198 | AGGAAATACCCTCCAGTAGCTTA | 58.108 | 43.478 | 0.00 | 0.00 | 40.05 | 3.09 |
318 | 322 | 3.737263 | AGGAAATACCCTCCAGTAGCTT | 58.263 | 45.455 | 0.00 | 0.00 | 40.05 | 3.74 |
325 | 329 | 4.728772 | CATGCATTAGGAAATACCCTCCA | 58.271 | 43.478 | 0.00 | 0.00 | 40.05 | 3.86 |
631 | 2338 | 4.947388 | TGTAGATTGATGTGGGTTTAAGCC | 59.053 | 41.667 | 6.20 | 6.20 | 36.00 | 4.35 |
635 | 2342 | 5.221945 | TGTGGTGTAGATTGATGTGGGTTTA | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
646 | 2353 | 7.848223 | TTACAAGATGATGTGGTGTAGATTG | 57.152 | 36.000 | 0.00 | 0.00 | 34.75 | 2.67 |
653 | 2360 | 4.396166 | GGAGGTTTACAAGATGATGTGGTG | 59.604 | 45.833 | 0.00 | 0.00 | 34.75 | 4.17 |
760 | 2467 | 8.689061 | GGAAGAAAGTTTCCTTAAAAACACCTA | 58.311 | 33.333 | 12.05 | 0.00 | 42.73 | 3.08 |
761 | 2468 | 7.179516 | TGGAAGAAAGTTTCCTTAAAAACACCT | 59.820 | 33.333 | 12.05 | 0.00 | 45.59 | 4.00 |
762 | 2469 | 7.324935 | TGGAAGAAAGTTTCCTTAAAAACACC | 58.675 | 34.615 | 12.05 | 3.32 | 45.59 | 4.16 |
763 | 2470 | 8.942338 | ATGGAAGAAAGTTTCCTTAAAAACAC | 57.058 | 30.769 | 12.05 | 0.00 | 45.59 | 3.32 |
764 | 2471 | 9.594478 | GAATGGAAGAAAGTTTCCTTAAAAACA | 57.406 | 29.630 | 12.05 | 1.77 | 45.59 | 2.83 |
765 | 2472 | 9.594478 | TGAATGGAAGAAAGTTTCCTTAAAAAC | 57.406 | 29.630 | 12.05 | 0.00 | 45.59 | 2.43 |
768 | 2475 | 9.762933 | CATTGAATGGAAGAAAGTTTCCTTAAA | 57.237 | 29.630 | 12.05 | 0.00 | 45.59 | 1.52 |
770 | 2477 | 8.477419 | ACATTGAATGGAAGAAAGTTTCCTTA | 57.523 | 30.769 | 12.05 | 0.00 | 45.59 | 2.69 |
772 | 2479 | 6.983906 | ACATTGAATGGAAGAAAGTTTCCT | 57.016 | 33.333 | 12.05 | 0.00 | 45.59 | 3.36 |
773 | 2480 | 8.337532 | CAAAACATTGAATGGAAGAAAGTTTCC | 58.662 | 33.333 | 12.05 | 0.00 | 45.59 | 3.13 |
774 | 2481 | 8.882736 | ACAAAACATTGAATGGAAGAAAGTTTC | 58.117 | 29.630 | 10.27 | 7.57 | 33.60 | 2.78 |
776 | 2483 | 8.791327 | AACAAAACATTGAATGGAAGAAAGTT | 57.209 | 26.923 | 10.27 | 2.66 | 33.60 | 2.66 |
849 | 3490 | 7.168905 | CCTGGTAGGAAGAATACTCAGTTTTT | 58.831 | 38.462 | 0.00 | 0.00 | 37.67 | 1.94 |
852 | 3493 | 4.162509 | GCCTGGTAGGAAGAATACTCAGTT | 59.837 | 45.833 | 0.00 | 0.00 | 37.67 | 3.16 |
854 | 3495 | 3.070302 | GGCCTGGTAGGAAGAATACTCAG | 59.930 | 52.174 | 0.00 | 0.00 | 37.67 | 3.35 |
856 | 3497 | 2.036089 | CGGCCTGGTAGGAAGAATACTC | 59.964 | 54.545 | 0.00 | 0.00 | 37.67 | 2.59 |
857 | 3498 | 2.040178 | CGGCCTGGTAGGAAGAATACT | 58.960 | 52.381 | 0.00 | 0.00 | 37.67 | 2.12 |
858 | 3499 | 1.070289 | CCGGCCTGGTAGGAAGAATAC | 59.930 | 57.143 | 0.00 | 0.00 | 37.67 | 1.89 |
863 | 3519 | 4.176752 | GGCCGGCCTGGTAGGAAG | 62.177 | 72.222 | 38.76 | 0.00 | 37.67 | 3.46 |
882 | 3552 | 3.698029 | TGACTAGCGGGTTCGTATTAC | 57.302 | 47.619 | 0.00 | 0.00 | 38.89 | 1.89 |
890 | 3560 | 0.107831 | TTGCTGTTGACTAGCGGGTT | 59.892 | 50.000 | 0.00 | 0.00 | 44.01 | 4.11 |
893 | 3563 | 1.639298 | GCCTTGCTGTTGACTAGCGG | 61.639 | 60.000 | 0.00 | 0.00 | 44.01 | 5.52 |
898 | 3568 | 0.896940 | CATGGGCCTTGCTGTTGACT | 60.897 | 55.000 | 4.53 | 0.00 | 0.00 | 3.41 |
944 | 3614 | 2.774234 | ACAGAGAGAGAGAGAGAGAGGG | 59.226 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
947 | 3617 | 4.614475 | AGAGACAGAGAGAGAGAGAGAGA | 58.386 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
949 | 3619 | 4.614475 | AGAGAGACAGAGAGAGAGAGAGA | 58.386 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
950 | 3620 | 4.648762 | AGAGAGAGACAGAGAGAGAGAGAG | 59.351 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
951 | 3621 | 4.614475 | AGAGAGAGACAGAGAGAGAGAGA | 58.386 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
952 | 3622 | 4.648762 | AGAGAGAGAGACAGAGAGAGAGAG | 59.351 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
953 | 3623 | 4.614475 | AGAGAGAGAGACAGAGAGAGAGA | 58.386 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
954 | 3624 | 4.648762 | AGAGAGAGAGAGACAGAGAGAGAG | 59.351 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
955 | 3625 | 4.614475 | AGAGAGAGAGAGACAGAGAGAGA | 58.386 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
956 | 3626 | 4.202202 | GGAGAGAGAGAGAGACAGAGAGAG | 60.202 | 54.167 | 0.00 | 0.00 | 0.00 | 3.20 |
957 | 3627 | 3.706594 | GGAGAGAGAGAGAGACAGAGAGA | 59.293 | 52.174 | 0.00 | 0.00 | 0.00 | 3.10 |
958 | 3628 | 3.181461 | GGGAGAGAGAGAGAGACAGAGAG | 60.181 | 56.522 | 0.00 | 0.00 | 0.00 | 3.20 |
959 | 3629 | 2.771943 | GGGAGAGAGAGAGAGACAGAGA | 59.228 | 54.545 | 0.00 | 0.00 | 0.00 | 3.10 |
960 | 3630 | 2.483714 | CGGGAGAGAGAGAGAGACAGAG | 60.484 | 59.091 | 0.00 | 0.00 | 0.00 | 3.35 |
961 | 3631 | 1.484653 | CGGGAGAGAGAGAGAGACAGA | 59.515 | 57.143 | 0.00 | 0.00 | 0.00 | 3.41 |
962 | 3632 | 1.953559 | CGGGAGAGAGAGAGAGACAG | 58.046 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
963 | 3633 | 0.107410 | GCGGGAGAGAGAGAGAGACA | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
964 | 3634 | 0.107410 | TGCGGGAGAGAGAGAGAGAC | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1002 | 3672 | 1.651240 | CCAGAAGACAATGGCTGCGG | 61.651 | 60.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1036 | 3706 | 3.281787 | AACGAGGAGGGGAGGGGA | 61.282 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
1053 | 3723 | 1.134907 | GTTTAATCGCGTCTGAGGGGA | 60.135 | 52.381 | 17.48 | 17.48 | 0.00 | 4.81 |
1055 | 3725 | 1.287425 | GGTTTAATCGCGTCTGAGGG | 58.713 | 55.000 | 5.77 | 0.00 | 0.00 | 4.30 |
1066 | 3736 | 0.255033 | AGGCGAGGTGGGGTTTAATC | 59.745 | 55.000 | 0.00 | 0.00 | 0.00 | 1.75 |
1129 | 4179 | 1.005215 | CATGTCTTTCCCCCTTCTGCT | 59.995 | 52.381 | 0.00 | 0.00 | 0.00 | 4.24 |
1141 | 4191 | 1.562672 | CCGAGGGTCCCCATGTCTTT | 61.563 | 60.000 | 3.51 | 0.00 | 38.92 | 2.52 |
1414 | 4465 | 1.406614 | CCCTGAGTCAACCTGATCTGC | 60.407 | 57.143 | 0.00 | 0.00 | 0.00 | 4.26 |
1483 | 4535 | 7.538575 | ACCAATTTCTATTCCAGTTTCATTCG | 58.461 | 34.615 | 0.00 | 0.00 | 0.00 | 3.34 |
1585 | 4637 | 2.854185 | GCAAGTCAACAAACAGAACAGC | 59.146 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1635 | 4687 | 6.656632 | AGGTGAGAATAAGAGATTGCGATA | 57.343 | 37.500 | 0.00 | 0.00 | 0.00 | 2.92 |
1699 | 4752 | 4.133820 | CACAAAAGTCAGTATGGTCACCA | 58.866 | 43.478 | 0.00 | 0.00 | 38.19 | 4.17 |
1723 | 4776 | 1.059264 | GACACGCGAAATACAGCACTC | 59.941 | 52.381 | 15.93 | 0.00 | 0.00 | 3.51 |
1736 | 4789 | 2.880822 | ATCAATTTGACAGACACGCG | 57.119 | 45.000 | 3.53 | 3.53 | 0.00 | 6.01 |
1816 | 4869 | 1.837439 | TCCACCAACTATAGCACTGGG | 59.163 | 52.381 | 16.49 | 7.31 | 32.94 | 4.45 |
1888 | 4941 | 7.066645 | GGAAACTACTACCCATTGTTGTTATCC | 59.933 | 40.741 | 0.00 | 0.00 | 34.66 | 2.59 |
1890 | 4943 | 6.888088 | GGGAAACTACTACCCATTGTTGTTAT | 59.112 | 38.462 | 0.00 | 0.00 | 42.81 | 1.89 |
2004 | 5057 | 9.967451 | TGTTGTTATCCATAGGTCAGAAATTAA | 57.033 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2005 | 5058 | 9.967451 | TTGTTGTTATCCATAGGTCAGAAATTA | 57.033 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2006 | 5059 | 8.877864 | TTGTTGTTATCCATAGGTCAGAAATT | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
2007 | 5060 | 8.906867 | CATTGTTGTTATCCATAGGTCAGAAAT | 58.093 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2008 | 5061 | 7.339212 | CCATTGTTGTTATCCATAGGTCAGAAA | 59.661 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
2009 | 5062 | 6.828273 | CCATTGTTGTTATCCATAGGTCAGAA | 59.172 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2010 | 5063 | 6.356556 | CCATTGTTGTTATCCATAGGTCAGA | 58.643 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2011 | 5064 | 5.532406 | CCCATTGTTGTTATCCATAGGTCAG | 59.468 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2012 | 5065 | 5.044476 | ACCCATTGTTGTTATCCATAGGTCA | 60.044 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2013 | 5066 | 5.445964 | ACCCATTGTTGTTATCCATAGGTC | 58.554 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
2014 | 5067 | 5.466127 | ACCCATTGTTGTTATCCATAGGT | 57.534 | 39.130 | 0.00 | 0.00 | 0.00 | 3.08 |
2015 | 5068 | 6.601332 | ACTACCCATTGTTGTTATCCATAGG | 58.399 | 40.000 | 0.00 | 0.00 | 27.90 | 2.57 |
2016 | 5069 | 8.429641 | ACTACTACCCATTGTTGTTATCCATAG | 58.570 | 37.037 | 0.00 | 0.00 | 34.66 | 2.23 |
2017 | 5070 | 8.326765 | ACTACTACCCATTGTTGTTATCCATA | 57.673 | 34.615 | 0.00 | 0.00 | 34.66 | 2.74 |
2018 | 5071 | 7.208064 | ACTACTACCCATTGTTGTTATCCAT | 57.792 | 36.000 | 0.00 | 0.00 | 34.66 | 3.41 |
2019 | 5072 | 6.630203 | ACTACTACCCATTGTTGTTATCCA | 57.370 | 37.500 | 0.00 | 0.00 | 34.66 | 3.41 |
2020 | 5073 | 7.066645 | GGAAACTACTACCCATTGTTGTTATCC | 59.933 | 40.741 | 0.00 | 0.00 | 34.66 | 2.59 |
2021 | 5074 | 7.066645 | GGGAAACTACTACCCATTGTTGTTATC | 59.933 | 40.741 | 0.00 | 0.00 | 42.81 | 1.75 |
2022 | 5075 | 6.888088 | GGGAAACTACTACCCATTGTTGTTAT | 59.112 | 38.462 | 0.00 | 0.00 | 42.81 | 1.89 |
2023 | 5076 | 6.044637 | AGGGAAACTACTACCCATTGTTGTTA | 59.955 | 38.462 | 0.00 | 0.00 | 45.43 | 2.41 |
2024 | 5077 | 5.074804 | GGGAAACTACTACCCATTGTTGTT | 58.925 | 41.667 | 0.00 | 0.00 | 42.81 | 2.83 |
2025 | 5078 | 4.352893 | AGGGAAACTACTACCCATTGTTGT | 59.647 | 41.667 | 0.00 | 0.00 | 45.43 | 3.32 |
2026 | 5079 | 4.918588 | AGGGAAACTACTACCCATTGTTG | 58.081 | 43.478 | 0.00 | 0.00 | 45.43 | 3.33 |
2027 | 5080 | 5.073965 | TGAAGGGAAACTACTACCCATTGTT | 59.926 | 40.000 | 0.00 | 0.00 | 45.43 | 2.83 |
2028 | 5081 | 4.600111 | TGAAGGGAAACTACTACCCATTGT | 59.400 | 41.667 | 0.00 | 0.00 | 45.43 | 2.71 |
2029 | 5082 | 4.941873 | GTGAAGGGAAACTACTACCCATTG | 59.058 | 45.833 | 0.00 | 0.00 | 45.43 | 2.82 |
2030 | 5083 | 4.850386 | AGTGAAGGGAAACTACTACCCATT | 59.150 | 41.667 | 0.00 | 0.00 | 45.43 | 3.16 |
2031 | 5084 | 4.436079 | AGTGAAGGGAAACTACTACCCAT | 58.564 | 43.478 | 0.00 | 0.00 | 45.43 | 4.00 |
2032 | 5085 | 3.865571 | AGTGAAGGGAAACTACTACCCA | 58.134 | 45.455 | 0.00 | 0.00 | 45.43 | 4.51 |
2033 | 5086 | 6.556974 | AATAGTGAAGGGAAACTACTACCC | 57.443 | 41.667 | 0.00 | 0.00 | 43.55 | 3.69 |
2034 | 5087 | 7.618137 | TCAAATAGTGAAGGGAAACTACTACC | 58.382 | 38.462 | 0.00 | 0.00 | 31.93 | 3.18 |
2048 | 5101 | 4.202461 | ACACAGGAGCCTTCAAATAGTGAA | 60.202 | 41.667 | 7.61 | 0.00 | 44.20 | 3.18 |
2049 | 5102 | 3.327757 | ACACAGGAGCCTTCAAATAGTGA | 59.672 | 43.478 | 7.61 | 0.00 | 0.00 | 3.41 |
2050 | 5103 | 3.679389 | ACACAGGAGCCTTCAAATAGTG | 58.321 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
2051 | 5104 | 4.323562 | GGTACACAGGAGCCTTCAAATAGT | 60.324 | 45.833 | 0.00 | 0.00 | 0.00 | 2.12 |
2052 | 5105 | 4.080863 | AGGTACACAGGAGCCTTCAAATAG | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
2053 | 5106 | 3.844211 | AGGTACACAGGAGCCTTCAAATA | 59.156 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2054 | 5107 | 2.644798 | AGGTACACAGGAGCCTTCAAAT | 59.355 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
2055 | 5108 | 2.054799 | AGGTACACAGGAGCCTTCAAA | 58.945 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
2056 | 5109 | 1.729586 | AGGTACACAGGAGCCTTCAA | 58.270 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2057 | 5110 | 2.615986 | TAGGTACACAGGAGCCTTCA | 57.384 | 50.000 | 0.00 | 0.00 | 32.90 | 3.02 |
2058 | 5111 | 3.301274 | AGATAGGTACACAGGAGCCTTC | 58.699 | 50.000 | 0.00 | 0.00 | 32.90 | 3.46 |
2059 | 5112 | 3.406512 | AGATAGGTACACAGGAGCCTT | 57.593 | 47.619 | 0.00 | 0.00 | 32.90 | 4.35 |
2060 | 5113 | 3.034635 | CAAGATAGGTACACAGGAGCCT | 58.965 | 50.000 | 0.00 | 0.00 | 35.28 | 4.58 |
2061 | 5114 | 3.031736 | TCAAGATAGGTACACAGGAGCC | 58.968 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2062 | 5115 | 4.557695 | CGATCAAGATAGGTACACAGGAGC | 60.558 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2063 | 5116 | 4.822350 | TCGATCAAGATAGGTACACAGGAG | 59.178 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
2064 | 5117 | 4.788679 | TCGATCAAGATAGGTACACAGGA | 58.211 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
2065 | 5118 | 5.241728 | TGATCGATCAAGATAGGTACACAGG | 59.758 | 44.000 | 25.44 | 0.00 | 33.08 | 4.00 |
2066 | 5119 | 6.319141 | TGATCGATCAAGATAGGTACACAG | 57.681 | 41.667 | 25.44 | 0.00 | 33.08 | 3.66 |
2067 | 5120 | 6.901081 | ATGATCGATCAAGATAGGTACACA | 57.099 | 37.500 | 30.41 | 4.18 | 40.69 | 3.72 |
2068 | 5121 | 7.148641 | ACAATGATCGATCAAGATAGGTACAC | 58.851 | 38.462 | 30.41 | 0.00 | 40.69 | 2.90 |
2069 | 5122 | 7.290110 | ACAATGATCGATCAAGATAGGTACA | 57.710 | 36.000 | 30.41 | 4.85 | 40.69 | 2.90 |
2070 | 5123 | 8.731605 | TCTACAATGATCGATCAAGATAGGTAC | 58.268 | 37.037 | 30.41 | 0.00 | 40.69 | 3.34 |
2071 | 5124 | 8.863872 | TCTACAATGATCGATCAAGATAGGTA | 57.136 | 34.615 | 30.41 | 21.51 | 40.69 | 3.08 |
2072 | 5125 | 7.767250 | TCTACAATGATCGATCAAGATAGGT | 57.233 | 36.000 | 30.41 | 21.54 | 40.69 | 3.08 |
2073 | 5126 | 7.543868 | GGTTCTACAATGATCGATCAAGATAGG | 59.456 | 40.741 | 30.41 | 18.24 | 40.69 | 2.57 |
2074 | 5127 | 8.084684 | TGGTTCTACAATGATCGATCAAGATAG | 58.915 | 37.037 | 30.41 | 26.40 | 40.69 | 2.08 |
2075 | 5128 | 7.951591 | TGGTTCTACAATGATCGATCAAGATA | 58.048 | 34.615 | 30.41 | 19.97 | 40.69 | 1.98 |
2076 | 5129 | 6.820335 | TGGTTCTACAATGATCGATCAAGAT | 58.180 | 36.000 | 30.41 | 19.92 | 40.69 | 2.40 |
2077 | 5130 | 6.220726 | TGGTTCTACAATGATCGATCAAGA | 57.779 | 37.500 | 30.41 | 24.07 | 40.69 | 3.02 |
2078 | 5131 | 6.703165 | TCATGGTTCTACAATGATCGATCAAG | 59.297 | 38.462 | 30.41 | 25.79 | 40.69 | 3.02 |
2079 | 5132 | 6.581712 | TCATGGTTCTACAATGATCGATCAA | 58.418 | 36.000 | 30.41 | 14.16 | 40.69 | 2.57 |
2080 | 5133 | 6.160576 | TCATGGTTCTACAATGATCGATCA | 57.839 | 37.500 | 29.09 | 29.09 | 41.70 | 2.92 |
2081 | 5134 | 5.636965 | CCTCATGGTTCTACAATGATCGATC | 59.363 | 44.000 | 18.72 | 18.72 | 0.00 | 3.69 |
2082 | 5135 | 5.545588 | CCTCATGGTTCTACAATGATCGAT | 58.454 | 41.667 | 0.00 | 0.00 | 0.00 | 3.59 |
2083 | 5136 | 4.740634 | GCCTCATGGTTCTACAATGATCGA | 60.741 | 45.833 | 0.00 | 0.00 | 35.27 | 3.59 |
2084 | 5137 | 3.496130 | GCCTCATGGTTCTACAATGATCG | 59.504 | 47.826 | 0.00 | 0.00 | 35.27 | 3.69 |
2085 | 5138 | 4.454678 | TGCCTCATGGTTCTACAATGATC | 58.545 | 43.478 | 0.00 | 0.00 | 35.27 | 2.92 |
2086 | 5139 | 4.508551 | TGCCTCATGGTTCTACAATGAT | 57.491 | 40.909 | 0.00 | 0.00 | 35.27 | 2.45 |
2087 | 5140 | 3.998913 | TGCCTCATGGTTCTACAATGA | 57.001 | 42.857 | 0.00 | 0.00 | 35.27 | 2.57 |
2088 | 5141 | 4.201657 | TCATGCCTCATGGTTCTACAATG | 58.798 | 43.478 | 6.92 | 0.00 | 41.66 | 2.82 |
2089 | 5142 | 4.458397 | CTCATGCCTCATGGTTCTACAAT | 58.542 | 43.478 | 6.92 | 0.00 | 41.66 | 2.71 |
2090 | 5143 | 3.877559 | CTCATGCCTCATGGTTCTACAA | 58.122 | 45.455 | 6.92 | 0.00 | 41.66 | 2.41 |
2091 | 5144 | 2.420547 | GCTCATGCCTCATGGTTCTACA | 60.421 | 50.000 | 6.92 | 0.00 | 41.66 | 2.74 |
2092 | 5145 | 2.158842 | AGCTCATGCCTCATGGTTCTAC | 60.159 | 50.000 | 6.92 | 0.00 | 41.66 | 2.59 |
2093 | 5146 | 2.121948 | AGCTCATGCCTCATGGTTCTA | 58.878 | 47.619 | 6.92 | 0.00 | 41.66 | 2.10 |
2094 | 5147 | 0.917533 | AGCTCATGCCTCATGGTTCT | 59.082 | 50.000 | 6.92 | 0.43 | 41.66 | 3.01 |
2095 | 5148 | 2.158842 | AGTAGCTCATGCCTCATGGTTC | 60.159 | 50.000 | 6.92 | 0.00 | 41.66 | 3.62 |
2096 | 5149 | 1.842562 | AGTAGCTCATGCCTCATGGTT | 59.157 | 47.619 | 6.92 | 0.16 | 41.66 | 3.67 |
2097 | 5150 | 1.504912 | AGTAGCTCATGCCTCATGGT | 58.495 | 50.000 | 6.92 | 0.00 | 41.66 | 3.55 |
2098 | 5151 | 2.617308 | CAAAGTAGCTCATGCCTCATGG | 59.383 | 50.000 | 6.92 | 0.34 | 41.66 | 3.66 |
2099 | 5152 | 2.617308 | CCAAAGTAGCTCATGCCTCATG | 59.383 | 50.000 | 0.00 | 0.59 | 42.60 | 3.07 |
2100 | 5153 | 2.240667 | ACCAAAGTAGCTCATGCCTCAT | 59.759 | 45.455 | 0.00 | 0.00 | 40.80 | 2.90 |
2101 | 5154 | 1.630369 | ACCAAAGTAGCTCATGCCTCA | 59.370 | 47.619 | 0.00 | 0.00 | 40.80 | 3.86 |
2102 | 5155 | 2.012673 | CACCAAAGTAGCTCATGCCTC | 58.987 | 52.381 | 0.00 | 0.00 | 40.80 | 4.70 |
2103 | 5156 | 1.630369 | TCACCAAAGTAGCTCATGCCT | 59.370 | 47.619 | 0.00 | 0.00 | 40.80 | 4.75 |
2104 | 5157 | 2.012673 | CTCACCAAAGTAGCTCATGCC | 58.987 | 52.381 | 0.00 | 0.00 | 40.80 | 4.40 |
2105 | 5158 | 2.977914 | TCTCACCAAAGTAGCTCATGC | 58.022 | 47.619 | 0.00 | 0.00 | 40.05 | 4.06 |
2106 | 5159 | 5.181009 | TGAATCTCACCAAAGTAGCTCATG | 58.819 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
2107 | 5160 | 5.426689 | TGAATCTCACCAAAGTAGCTCAT | 57.573 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
2108 | 5161 | 4.890158 | TGAATCTCACCAAAGTAGCTCA | 57.110 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
2109 | 5162 | 6.560253 | TTTTGAATCTCACCAAAGTAGCTC | 57.440 | 37.500 | 0.00 | 0.00 | 34.29 | 4.09 |
2110 | 5163 | 6.959639 | TTTTTGAATCTCACCAAAGTAGCT | 57.040 | 33.333 | 0.00 | 0.00 | 34.29 | 3.32 |
2164 | 5217 | 6.108687 | TGCCTTGACACTGATAAAGACATAG | 58.891 | 40.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2169 | 5222 | 4.183865 | CGATGCCTTGACACTGATAAAGA | 58.816 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
2213 | 5266 | 4.042809 | TCTTTGTTGATCCTTGGCTCCTTA | 59.957 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
2313 | 5366 | 6.263168 | CAGGTGAAGTGTTTACCTCTCAAAAT | 59.737 | 38.462 | 0.30 | 0.00 | 42.72 | 1.82 |
2339 | 5392 | 6.006449 | AGGATAATGAATGACCATGGTTAGC | 58.994 | 40.000 | 20.85 | 11.79 | 0.00 | 3.09 |
2362 | 5415 | 7.521529 | TGCGAACAAGAGAAGAAAATAATCAG | 58.478 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
2367 | 5420 | 7.433708 | TTGATGCGAACAAGAGAAGAAAATA | 57.566 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2415 | 5468 | 8.913487 | TTATGTAATACATCGACACCTAGAGA | 57.087 | 34.615 | 9.43 | 0.00 | 39.88 | 3.10 |
2473 | 5527 | 2.602257 | TCCATTCTGAGCACCATACG | 57.398 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2611 | 5665 | 1.954927 | GAAGGACCTTCCCGCTAATG | 58.045 | 55.000 | 21.88 | 0.00 | 37.19 | 1.90 |
2750 | 5804 | 6.685527 | TTTTGTAAATGACGCCATAGCATA | 57.314 | 33.333 | 0.00 | 0.00 | 39.83 | 3.14 |
2829 | 5885 | 4.044426 | GACAAAATGAAGCTCAGCGTTTT | 58.956 | 39.130 | 0.00 | 7.78 | 0.00 | 2.43 |
2834 | 5890 | 4.494350 | TCAAGACAAAATGAAGCTCAGC | 57.506 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
2836 | 5892 | 6.829229 | ATCATCAAGACAAAATGAAGCTCA | 57.171 | 33.333 | 0.00 | 0.00 | 33.44 | 4.26 |
2961 | 6017 | 2.175184 | CTCCGTCAAGCAAAGTGGCG | 62.175 | 60.000 | 0.00 | 0.00 | 43.57 | 5.69 |
3186 | 6243 | 6.328672 | AGCCAGGAGTATGACAATCTTCTAAT | 59.671 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
3366 | 6423 | 9.649316 | AGTCTAACCTAGAAATTGAGCTAGTAT | 57.351 | 33.333 | 0.00 | 0.00 | 36.40 | 2.12 |
3412 | 6469 | 7.018235 | GCTCATAAAGAGTTCTAACAGCAAAC | 58.982 | 38.462 | 0.00 | 0.00 | 46.47 | 2.93 |
3417 | 6474 | 6.870965 | ACTGTGCTCATAAAGAGTTCTAACAG | 59.129 | 38.462 | 0.00 | 0.00 | 46.47 | 3.16 |
3547 | 6604 | 6.749923 | ATAAAGCTGAACATCCTTGTCTTC | 57.250 | 37.500 | 0.00 | 0.00 | 34.06 | 2.87 |
3814 | 6871 | 1.402259 | AGCATTGAGTCGTACTCCTCG | 59.598 | 52.381 | 11.01 | 0.00 | 44.44 | 4.63 |
3959 | 7016 | 0.110486 | AAATGTTCCAGGTCGCCACT | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3968 | 7025 | 5.629020 | CCAAAACATACGTCAAATGTTCCAG | 59.371 | 40.000 | 13.95 | 8.16 | 44.66 | 3.86 |
4137 | 7194 | 3.006323 | AGAGTACAAGACAGGACTGCTTG | 59.994 | 47.826 | 22.81 | 22.81 | 43.55 | 4.01 |
4150 | 7207 | 9.029243 | CAATTAAGATGCACTCTAGAGTACAAG | 57.971 | 37.037 | 25.85 | 15.09 | 38.13 | 3.16 |
4174 | 7231 | 7.768120 | AGCCATTTAAAAACAAACAGATCACAA | 59.232 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
4206 | 7263 | 5.829924 | GGGGCAAAGATAGAAGATTGAATCA | 59.170 | 40.000 | 8.03 | 0.00 | 0.00 | 2.57 |
4272 | 7329 | 6.324819 | ACATTGCCGATGTCTCTAAAATTTG | 58.675 | 36.000 | 0.00 | 0.00 | 45.88 | 2.32 |
4306 | 7363 | 7.647907 | ACTGAAAATTGAAATTTAGCAGCAG | 57.352 | 32.000 | 20.17 | 15.21 | 40.63 | 4.24 |
4487 | 7555 | 7.806409 | ATCAACACAGCATGCATATAACTTA | 57.194 | 32.000 | 21.98 | 0.00 | 42.53 | 2.24 |
4556 | 7624 | 5.882557 | AGTGCAGTAAAAGCATACTTAGCAT | 59.117 | 36.000 | 0.00 | 2.22 | 44.79 | 3.79 |
4563 | 7631 | 5.063564 | GTGTCCTAGTGCAGTAAAAGCATAC | 59.936 | 44.000 | 2.26 | 0.00 | 44.79 | 2.39 |
4574 | 7642 | 0.108424 | GCTGAGGTGTCCTAGTGCAG | 60.108 | 60.000 | 0.00 | 0.00 | 31.76 | 4.41 |
4583 | 7651 | 5.824904 | ATAAATCATGTTGCTGAGGTGTC | 57.175 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
4603 | 7671 | 9.730420 | GTTTTGTGTAAGAAAAGAGAGCAAATA | 57.270 | 29.630 | 0.00 | 0.00 | 39.92 | 1.40 |
4607 | 7675 | 8.500753 | TTAGTTTTGTGTAAGAAAAGAGAGCA | 57.499 | 30.769 | 0.00 | 0.00 | 39.92 | 4.26 |
4636 | 7704 | 5.762179 | ATTGGTCAGAGGTAGTTGAATGA | 57.238 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
4639 | 7707 | 4.530553 | TGCTATTGGTCAGAGGTAGTTGAA | 59.469 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
4666 | 7734 | 2.026729 | GGGGCTTGAGAGTTTAGAGCTT | 60.027 | 50.000 | 0.00 | 0.00 | 33.96 | 3.74 |
4830 | 7898 | 3.139469 | GTCGACGAGGGGAGGACC | 61.139 | 72.222 | 0.00 | 0.00 | 39.11 | 4.46 |
4853 | 7921 | 3.723348 | GGAGGTTGTTCGGCGTGC | 61.723 | 66.667 | 6.85 | 1.22 | 0.00 | 5.34 |
4873 | 7941 | 2.048127 | GTTCTGGTTCGAGGCGCT | 60.048 | 61.111 | 7.64 | 0.00 | 0.00 | 5.92 |
4949 | 8017 | 1.078143 | AAAGAGTGCTCGGATGGCC | 60.078 | 57.895 | 0.00 | 0.00 | 34.09 | 5.36 |
4950 | 8018 | 0.391661 | TCAAAGAGTGCTCGGATGGC | 60.392 | 55.000 | 0.00 | 0.00 | 34.09 | 4.40 |
4951 | 8019 | 2.005451 | CTTCAAAGAGTGCTCGGATGG | 58.995 | 52.381 | 0.00 | 0.00 | 34.09 | 3.51 |
4952 | 8020 | 2.005451 | CCTTCAAAGAGTGCTCGGATG | 58.995 | 52.381 | 0.00 | 0.00 | 34.09 | 3.51 |
4953 | 8021 | 1.677217 | GCCTTCAAAGAGTGCTCGGAT | 60.677 | 52.381 | 0.00 | 0.00 | 34.09 | 4.18 |
4963 | 8031 | 0.037303 | CTGGAGCAGGCCTTCAAAGA | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4965 | 8033 | 0.250901 | GACTGGAGCAGGCCTTCAAA | 60.251 | 55.000 | 0.00 | 0.00 | 32.43 | 2.69 |
4966 | 8034 | 1.376466 | GACTGGAGCAGGCCTTCAA | 59.624 | 57.895 | 0.00 | 0.00 | 32.43 | 2.69 |
4967 | 8035 | 2.947532 | CGACTGGAGCAGGCCTTCA | 61.948 | 63.158 | 0.00 | 0.00 | 35.82 | 3.02 |
5033 | 8101 | 1.815421 | GTCATGATGGCCGCGACTT | 60.815 | 57.895 | 8.23 | 0.00 | 0.00 | 3.01 |
5034 | 8102 | 2.202932 | GTCATGATGGCCGCGACT | 60.203 | 61.111 | 8.23 | 0.00 | 0.00 | 4.18 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.